UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q9M9M6 (NDUS6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial; | |
Q9LUJ3 (RDM1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein RDM1; Protein RNA-directed DNA methylation 1; | |
Q9FMV1 (GCAL1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Gamma carbonic anhydrase-like 1, mitochondrial; | |
P04778 (CB1C_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Chlorophyll a-b binding protein 1, chloroplastic; Chlorophyll a-b protein 140; LHCII type I CAB-1; | |
Q38802 (KSA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Ent-copalyl diphosphate synthase, chloroplastic; Ent-kaurene synthase A; Protein GA REQUIRING 1; | |
P0DKH5 (WRK52_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Disease resistance protein RRS1; Disease resistance protein RCH2; Disease resistance protein SLH1; Probable WRKY transcription factor 52; Protein RPS4-homolog; Protein SENSITIVE TO LOW HUMIDITY 1; Resistance to Colletotrichum higginsianum 2 protein; Resistance to Ralstonia solanacearum 1 protein; WRKY DNA-binding protein 52; | |
O23722 (MVD1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Diphosphomevalonate decarboxylase MVD1, peroxisomal; Mevalonate 5-diphosphate decarboxylase 1; | |
Q9T041 (TOR1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Microtubule-associated protein TORTIFOLIA1; Microtubule-associated protein SPIRAL2; Protein CONVOLUTA; | |
Q9FLX7 (NDUA5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial; | |
Q39026 (MPK6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mitogen-activated protein kinase 6; | |
Q9LI74 (CHUP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein CHUP1, chloroplastic; Protein CHLOROPLAST UNUSUAL POSITIONING 1; | |
Q9LYG9 (MSL10_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mechanosensitive ion channel protein 10; Mechanosensitive channel of small conductance-like 10; MscS-Like protein 10; | |
P56779 (PSBE_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cytochrome b559 subunit alpha; PSII reaction center subunit V; | |
Q9FIC3 (BOLA2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein BOLA2; | |
O49195 (VSP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Vegetative storage protein 1; | |
Q94AI7 (TPL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein TOPLESS; WUS-interacting protein 1; | |
Q42577 (NDUS7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; | |
Q39044 (VPEB_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Vacuolar-processing enzyme beta-isozyme; Asparaginyl endopeptidase beta-VPE; Beta-VPE; | |
A3KPE8 (SDN1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Small RNA degrading nuclease 1; | |
Q39249 (VDE_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Violaxanthin de-epoxidase, chloroplastic; Protein NON-PHOTOCHEMICAL QUENCHING 1; | |
O48917 (SQD1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | UDP-sulfoquinovose synthase, chloroplastic; Sulfite:UDP-glucose sulfotransferase; Sulfolipid biosynthesis protein; | |
P82874 (TO203_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mitochondrial import receptor subunit TOM20-3; Translocase of outer membrane 20 kDa subunit 3; | |
Q8LAS7 (CNBL2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Calcineurin B-like protein 2; SOS3-like calcium-binding protein 1; | |
Q9C5D0 (CBSX2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | CBS domain-containing protein CBSX2, chloroplastic; CBS domain-containing protein 1; Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1; | |
Q9SZ83 (Y4967_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Uncharacterized oxidoreductase At4g09670; | |
Q9FGI6 (NDUS1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial; Protein EMBRYO DEFECTIVE 1467; | |
Q940U6 (FLU_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein FLUORESCENT IN BLUE LIGHT, chloroplastic; | |
Q9LYC2 (NPL41_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NPL4-like protein 1; | |
O22287 (GMPP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mannose-1-phosphate guanylyltransferase 1; GDP-mannose pyrophosphorylase 1; Protein CYTOKINESIS DEFECTIVE 1; Protein EMBRYO DEFECTIVE 101; Protein HYPERSENSITIVE TO AMMONIUM ION 1; Protein SENSITIVE TO OZONE 1; Protein VITAMIN C DEFECTIVE 1; | |
O82799 (NGA1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | B3 domain-containing transcription factor NGA1; Protein NGATHA 1; | |
C0LGR3 (RGI3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | LRR receptor-like serine/threonine-protein kinase RGI3; Protein RECEPTOR OF RGF1 1; Protein RGF1 INSENSITIVE 3; | |
Q9LKB9 (MYO6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Myosin-6; AtMYA2; | |
Q9FX83 (NDS8B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial; | |
Q9SQI2 (GIGAN_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein GIGANTEA; | |
Q8LAH7 (OPR1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 12-oxophytodienoate reductase 1; 12-oxophytodienoate-10,11-reductase 1; FS-AT-I; | |
Q9FFF6 (JOX2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Jasmonate-induced oxygenase 2; 2-oxoglutarate-dependent dioxygenase JOX2; Jasmonic acid oxidase 2; | |
Q9XI47 (SHH1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SAWADEE HOMEODOMAIN HOMOLOG 1; DNA-binding transcription factor 1; | |
Q9FK13 (PDV1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Plastid division protein PDV1; Protein PLASTID DIVISION1; | |
Q9ZVD0 (SRRT_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serrate RNA effector molecule; | |
Q94C12 (NDBAB_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B; | |
P56782 (PSBK_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Photosystem II reaction center protein K; | |
Q9SAR5 (AKR2A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Ankyrin repeat domain-containing protein 2A; | |
P62120 (RS32_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v; 60S ribosomal protein L41; Large ribosomal subunit protein eL41z/eL41y/eL41x/eL41w/eL41v; | |
Q9FWR5 (GCA1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Gamma carbonic anhydrase 1, mitochondrial; | |
P18064 (GPA1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Guanine nucleotide-binding protein alpha-1 subunit; | |
Q9SA56 (PSAD2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Photosystem I reaction center subunit II-2, chloroplastic; Photosystem I 20 kDa subunit 2; | |
Q95748 (NDUS3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NADH dehydrogenase [ubiquinone] iron-sulfur protein 3; NADH dehydrogenase subunit 9; | |
Q9LK22 (PUX1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Plant UBX domain-containing protein 1; CDC48-interacting UBX-domain protein 1; | |
P23321 (PSBO1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Oxygen-evolving enhancer protein 1-1, chloroplastic; 33 kDa subunit of oxygen evolving system of photosystem II; 33 kDa thylakoid membrane protein; Manganese-stabilizing protein 1; OEC 33 kDa subunit; | |
Q38937 (RAC5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Rac-like GTP-binding protein ARAC5; GTPase protein ROP4; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,240 | 37,334 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
30,410 | 5,314 | 346 | 697 | 28 | 271 | 58 | 33 | 8 | 20 | 4 | 68 | 19 | 4 | 1 | 26 | 2 | 1 | 1 | 12 | 1 | 1 | 6 | 3 |