UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
O16259 (STIP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Stress-induced-phosphoprotein 1; Hsc70/Hsp90-organizing protein; | |
Q09260 (LAG3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein lag-3; Abnormal cell lineage protein 3; Abnormal germline proliferation protein 3; | |
O01479 (TMOD_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Tropomodulin; Tmod-like protein; Uncoordinated protein 94; | |
Q17433 (DNJ2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | DnaJ homolog dnj-2; DnaJ domain protein 2; | |
H2KYQ5 (GYG1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Glycogenin-1; | |
P02566 (MYO4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Myosin-4; Myosin heavy chain B; Uncoordinated protein 54; | |
O01761 (UNC89_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Muscle M-line assembly protein unc-89; Inactive serine/threonine-protein kinase unc-89; Obscurin; Uncoordinated protein 89; | |
O62193 (PSF2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable DNA replication complex GINS protein PSF2; GINS complex subunit 2; | |
Q19905 (UGDH_CAEEL) | Swiss-Prot | Caenorhabditis elegans | UDP-glucose 6-dehydrogenase; Squashed vulva protein 4; | |
P34439 (HCDH1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1; | |
G5EDN3 (TIM_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein timeless homolog; | |
Q9TZQ3 (PGL1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Guanyl-specific ribonuclease pgl-1; P granule abnormality protein 1; | |
P91127 (TPPP_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Tubulin polymerization-promoting protein homolog; | |
P14585 (LIN12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein lin-12; Abnormal cell lineage protein 12; Notch-like protein lin-12; lin-12/Notch intracellular domain; | |
C6KRN1 (SAO1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Suppressor of aph-1; | |
P34712 (PGP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Multidrug resistance protein pgp-1; P-glycoprotein A; P-glycoprotein-related protein 1; | |
G5EGS3 (KLP12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Kinesin-like protein klp-12; | |
Q20728 (TBCB_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Tubulin-specific chaperone B; Tubulin-folding cofactor B; | |
Q9TXI0 (TIPIN_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein TIPIN homolog; CSM3 homolog; | |
Q93367 (MINA1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Messenger RNA-binding inhibitor of apoptosis 1; | |
P34690 (TBA2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Tubulin alpha-2 chain; | |
G5EDW2 (LPLT1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Latrophilin-like protein 1; | |
G5EF15 (POS1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | RNA-binding protein pos-1; Posterior segregation protein pos-1; Zinc-finger protein pos-1; | |
Q23551 (UNC22_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Twitchin; Uncoordinated protein 22; | |
P31161 (SODM1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Superoxide dismutase [Mn] 1, mitochondrial; | |
Q20057 (ERH2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Enhancer of rudimentary homolog 2; | |
V6CLJ5 (LAG1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Suppressor of hairless protein homolog; CSL transcription factor lag-1; Lin-12 and glp-1 phenotype protein; | |
O01738 (DEFI8_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Differentially expressed in FDCP 8 homolog; | |
Q9N3B0 (MANF_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Mesencephalic astrocyte-derived neurotrophic factor homolog; ARMET-like protein; MANF/CDNF-like protein; | |
Q9XWC3 (DMON1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | DOMON domain-containing protein Y73F4A.2; | |
Q19849 (EGL44_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Transcription enhancer factor-like protein egl-44; Egg-laying defective protein 44; | |
P34579 (UNC47_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Vesicular GABA transporter; Uncoordinated protein 47; | |
Q19863 (APTF4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Transcription factor aptf-4; | |
Q95XA8 (CRTC1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | CREB-regulated transcription coactivator 1 homolog; | |
Q21276 (NOP56_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nucleolar protein 56; | |
Q9U1W1 (TFG_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein tfg-1; | |
Q10917 (YT13_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative transporter B0252.3; | |
Q17761 (6PGD_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 6-phosphogluconate dehydrogenase, decarboxylating; | |
Q18493 (UAP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable UDP-N-acetylglucosamine pyrophosphorylase; | |
Q21551 (CHCH3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | MICOS complex subunit MIC19; Coiled-coil-helix-coiled-coil-helix domain-containing protein 3; | |
P58798 (ARPC4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable actin-related protein 2/3 complex subunit 4; Arp2/3 complex 20 kDa subunit; | |
Q21898 (VATL1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | V-type proton ATPase 16 kDa proteolipid subunit c 1; Vacuolar proton pump 16 kDa proteolipid subunit c 1; | |
P49808 (RGS2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Regulator of G-protein signaling rgs-2; | |
Q19541 (PID1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein pid-1; PiRNA-induced silencing defective protein 1; | |
P34419 (YLZ6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative esterase F42H10.6; | |
Q09951 (YSR3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein F59B10.3; | |
Q5ZR76 (GDPP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | GDP-D-glucose phosphorylase 1; Metabolite control phosphorylase 1; | |
P41879 (YPT1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein F37A4.1; | |
G5EEG1 (NFYA1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear transcription factor Y subunit nfya-1; CAAT box DNA-binding protein subunit nfya-1; | |
Q09320 (YQZ2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative metallophosphoesterase F40B5.2; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,832 | 12,782 | 23,005 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 12-mer | 14-mer | 16-mer | 20-mer | 24-mer | 26-mer | 32-mer | 34-mer | 40-mer | 41-mer | 44-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20,250 | 1,849 | 161 | 377 | 106 | 101 | 8 | 37 | 8 | 13 | 38 | 6 | 8 | 4 | 10 | 1 | 6 | 1 | 10 | 3 | 2 | 1 | 2 | 2 | 1 |