Non-structural protein 4 (nsp4) | P0DTD1 PRO_0000449622

Created: May 5, 2023, 9:33 p.m. at 21:33

Models Name Description GMQE QSQE Seq Id Coverage Range Method Resolution Oligo-state Ligands Found by Seq Similarity
3vc8.1.A
RNA-directed RNA polymerase
Crystal structure of the C-terminal cytoplasmic domain of non-structural protein 4 from mouse hepatitis virus A59
 0.12 0.00 61.36 0.18 411-500 X-ray 2.00 homo-dimer BLAST 0.49
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 3vcb.1.A
RNA-directed RNA polymerase
C425S mutant of the C-terminal cytoplasmic domain of non-structural protein 4 from mouse hepatitis virus A59
 0.12 0.17 61.36 0.18 411-500 X-ray 2.40 homo-dimer BLAST 0.49
3vcb.1.B
RNA-directed RNA polymerase
C425S mutant of the C-terminal cytoplasmic domain of non-structural protein 4 from mouse hepatitis virus A59
 0.12 0.17 61.36 0.18 411-500 X-ray 2.40 homo-dimer BLAST 0.49
3vc8.1.A
RNA-directed RNA polymerase
Crystal structure of the C-terminal cytoplasmic domain of non-structural protein 4 from mouse hepatitis virus A59
 0.12 0.00 60.23 0.18 411-500 X-ray 2.00 homo-dimer HHblits 0.49
3vcb.1.A
RNA-directed RNA polymerase
C425S mutant of the C-terminal cytoplasmic domain of non-structural protein 4 from mouse hepatitis virus A59
 0.12 0.17 60.23 0.18 411-500 X-ray 2.40 homo-dimer HHblits 0.49
3vcb.1.B
RNA-directed RNA polymerase
C425S mutant of the C-terminal cytoplasmic domain of non-structural protein 4 from mouse hepatitis virus A59
 0.12 0.17 60.23 0.18 411-500 X-ray 2.40 homo-dimer HHblits 0.49
3gzf.1.A
Replicase polyprotein 1ab
Structure of the C-terminal domain of nsp4 from Feline Coronavirus
 0.12 0.14 40.43 0.19 403-498 X-ray 2.76 homo-dimer BLAST 0.40
3gzf.1.B
Replicase polyprotein 1ab
Structure of the C-terminal domain of nsp4 from Feline Coronavirus
 0.11 0.14 40.43 0.19 403-498 X-ray 2.76 homo-dimer BLAST 0.40
3gzf.1.A
Replicase polyprotein 1ab
Structure of the C-terminal domain of nsp4 from Feline Coronavirus
 0.09 0.14 39.78 0.19 403-497 X-ray 2.76 homo-dimer HHblits 0.40
3gzf.1.B
Replicase polyprotein 1ab
Structure of the C-terminal domain of nsp4 from Feline Coronavirus
 0.11 0.13 39.78 0.19 403-497 X-ray 2.76 homo-dimer HHblits 0.40
6fyx.1.2
KLLA0B06182p
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
 0.01 14.75 0.12 416-492 EM 3.05 hetero-1-1-1-1-1-1-… 15 x MG, 5 x ZN, 1 x MET, 1 x GCP HHblits 0.29
3jap.1.2
eS25
Structure of a partial yeast 48S preinitiation complex in closed conformation
 0.01 14.75 0.12 416-492 EM 0.00 hetero-1-1-1-1-1-1-… 7 x MG, 4 x ZN, 1 x MET, 1 x GCP HHblits 0.29
3j80.1.3
eS25
CryoEM structure of 40S-eIF1-eIF1A preinitiation complex
 0.01 14.75 0.12 416-492 EM 0.00 hetero-1-1-1-1-1-1-… 5 x MG, 3 x ZN HHblits 0.29
3j81.1.0
eS25
CryoEM structure of a partial yeast 48S preinitiation complex
 0.01 14.75 0.12 416-492 EM 0.00 hetero-1-1-1-1-1-1-… 5 x MG, 3 x ZN, 1 x MET HHblits 0.29
3jam.1.0
eS25
CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
 0.01 14.75 0.12 416-492 EM 0.00 hetero-1-1-1-1-1-1-… 8 x MG, 3 x ZN HHblits 0.29
6uz7.70.A
40S ribosomal protein S25
K.lactis 80S ribosome with p/PE tRNA and eIF5B
 0.02 14.75 0.12 416-492 EM 0.00 monomer HHblits 0.29
6tnu.26.A
40S ribosomal protein S25-A
Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
 0.02 0.00 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
6t7t.28.A
40S ribosomal protein S25-A
Structure of yeast 80S ribosome stalled on poly(A) tract.
 0.02 0.00 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
6tb3.26.A
40S ribosomal protein S25-A
yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
 0.02 0.00 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
6t4q.25.A
40S ribosomal protein S25-A
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
 0.02 0.00 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
7a1g.1.3
40S ribosomal protein S25-A
Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex
 0.02 0.00 20.00 0.12 416-491 EM 0.00 monomer 10 x MG, 2 x ZN, 2 x SF4, 1 x ADP HHblits 0.30
7b7d.26.A
40S ribosomal protein S25-A
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
 0.02 0.00 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
7zpq.26.A
40S ribosomal protein S25
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
 0.02 0.00 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
7zuw.26.A
40S ribosomal protein S25
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae
 0.02 0.00 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
7zrs.26.A
40S ribosomal protein S25
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
 0.01 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
7zux.26.A
40S ribosomal protein S25-A
Collided ribosome in a disome unit from S. cerevisiae
 0.02 20.00 0.12 416-491 EM 0.00 monomer HHblits 0.30
6p25.1.A
Dolichyl-phosphate-mannose--protein mannosyltransferase 1
Structure of S. cerevisiae protein O-mannosyltransferase Pmt1-Pmt2 complex bound to the sugar donor and a peptide acceptor
 0.00 0.00 10.26 0.08 288-328 EM 0.00 monomer 2 x NAG, 3 x CPL, 1 x NNM, 1 x PRO-TYR-THR HHblits 0.25
6s7t.1.A
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
Cryo-EM structure of human oligosaccharyltransferase complex OST-B
 0.00 0.00 3.57 0.06 286-315 EM 0.00 monomer 10 x EGY, 13 x KZB, 2 x MG, 1 x 0K3, 1 x ALA-ALA-ASN-ALA-THR-ALA-ALA, 2 x NAG-NAG, 2 x NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN HHblits 0.26
4v8m.28.A
40S RIBOSOMAL PROTEIN S25, PUTATIVE
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
 0.00 29.17 0.05 411-434 EM 5.57 monomer HHblits 0.32