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Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

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NGL PV

### ORF9b protein (ORF9b) | P0DTD2

### Created: May 5, 2023, 9:34 p.m. at 21:34

Order by:

Oligo-State
  Homo-dimer
  (matching prediction)
GMQE
  0.64
QMEANDisCo Global:
  0.66 ± 0.06

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6z4u.1.A Protein 9b
X-ray Crystallographic Structure of Orf9b from SARS-CoV-2

Seq Identity
  100.00%
Coverage

Biounit Oligo State | Homo-dimer
QSQE | 0.66
Method | X-ray, 1.95 Å
Seq Similarity | 0.60
Coverage | 1.00
Range | 1-97

Ligand | Added to Model | Description
--- | --- | ---
15P | ✕ - Not biologically relevant. | POLYETHYLENE GLYCOL (N=34)

Model-Template Alignment

Oligo-State
  Homo-dimer
  (requested by user)
GMQE
  0.52
QMEANDisCo Global:
  0.61 ± 0.07

Ligands
  1 x D10
  1 x DECANE

  D10.1: | 6 residues within 4Å: Chain A: V.15, I.44, V.94, Chain B: L.46, L.54, V.76 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.15, A:I.44, A:V.94, A:V.94, B:L.46, B:L.54, B:V.76

QMEANDisCo Local
QMEAN Z-Scores

Template
2cme.2.A HYPOTHETICAL PROTEIN 5
THE CRYSTAL STRUCTURE OF SARS CORONAVIRUS ORF-9B PROTEIN

Seq Identity
  81.33%
Coverage

Biounit Oligo State | Homo-dimer
QSQE | 0.54
Method | X-ray, 2.80 Å
Seq Similarity | 0.53
Coverage | 0.77
Range | 10-97

Ligand | Added to Model | Description
--- | --- | ---
D10 | ✓ | DECANE

Model-Template Alignment

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