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Secondary Structure
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Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
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NGL PV

### Non-structural protein 10 (nsp10) | P0DTD1 PRO_0000449628

### Created: May 5, 2023, 9:33 p.m. at 21:33

Order by:

Oligo-State
  Homo-12-mer
  (requested by user)
GMQE
  0.77
QMEANDisCo Global:
  0.80 ± 0.05

Ligands
  24 x ZN
  24 x ZINC ION

  ZN.1: | 4 residues within 4Å: Chain A: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.74, A:C.77, A:H.83, A:C.90
  ZN.2: | 4 residues within 4Å: Chain A: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.117, A:C.120, A:C.128
  ZN.3: | 4 residues within 4Å: Chain B: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.74, B:C.77, B:H.83, B:C.90
  ZN.4: | 4 residues within 4Å: Chain B: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.117, B:C.120, B:C.128
  ZN.5: | 4 residues within 4Å: Chain C: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.74, C:C.77, C:H.83, C:C.90
  ZN.6: | 4 residues within 4Å: Chain C: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.117, C:C.120, C:C.128
  ZN.7: | 4 residues within 4Å: Chain D: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.74, D:C.77, D:H.83, D:C.90
  ZN.8: | 4 residues within 4Å: Chain D: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.117, D:C.120, D:C.128
  ZN.9: | 4 residues within 4Å: Chain E: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.74, E:C.77, E:H.83, E:C.90
  ZN.10: | 4 residues within 4Å: Chain E: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:C.117, E:C.120, E:C.128
  ZN.11: | 4 residues within 4Å: Chain F: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.74, F:C.77, F:H.83, F:C.90
  ZN.12: | 4 residues within 4Å: Chain F: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:C.117, F:C.120, F:C.128
  ZN.13: | 4 residues within 4Å: Chain G: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.74, G:C.77, G:H.83, G:C.90
  ZN.14: | 4 residues within 4Å: Chain G: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.117, G:C.120, G:C.128
  ZN.15: | 3 residues within 4Å: Chain H: C.74, C.77, C.90 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:C.74, H:C.77, H:C.90
  ZN.16: | 4 residues within 4Å: Chain H: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:C.117, H:C.120, H:C.128
  ZN.17: | 4 residues within 4Å: Chain I: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.74, I:C.77, I:H.83, I:C.90
  ZN.18: | 4 residues within 4Å: Chain I: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.117, I:C.120, I:C.128
  ZN.19: | 4 residues within 4Å: Chain J: C.74, C.77, H.83, C.90 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.74, J:C.77, J:C.90
  ZN.20: | 3 residues within 4Å: Chain J: C.117, C.120, C.128 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.117, J:C.120, J:C.128
  ZN.21: | 4 residues within 4Å: Chain K: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.74, K:C.77, K:H.83, K:C.90
  ZN.22: | 4 residues within 4Å: Chain K: C.117, C.120, C.128, S.129 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.117, K:C.120, K:C.128
  ZN.23: | 4 residues within 4Å: Chain L: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.74, L:C.77, L:H.83, L:C.90
  ZN.24: | 3 residues within 4Å: Chain L: C.117, C.120, C.128 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:C.117, L:C.120, L:C.128

QMEANDisCo Local
QMEAN Z-Scores

Template
2g9t.1.A orf1a polyprotein
Crystal structure of the SARS coronavirus nsp10 at 2.1A

Seq Identity
  97.12%
Coverage

Biounit Oligo State | Homo-12-mer
QSQE | 0.50
Method | X-ray, 2.10 Å
Seq Similarity | 0.63
Coverage | 1.00
Range | 9-129

Ligand | Added to Model | Description
--- | --- | ---
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.72
QMEANDisCo Global:
  0.77 ± 0.08

Ligands
  2 x ZN
  2 x ZINC ION

  ZN.6: | 4 residues within 4Å: Chain B: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.74, B:C.77, B:H.83, B:C.90
  ZN.7: | 4 residues within 4Å: Chain B: C.117, C.120, C.128, C.130 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.117, B:C.120, B:C.128, B:C.130

QMEANDisCo Local
QMEAN Z-Scores

Template
6w4h.1.B Non-structural protein 10
1.80 Angstrom Resolution Crystal Structure of NSP16 - NSP10 Complex from SARS-CoV-2

Seq Identity
  100.00%
Coverage

Biounit Oligo State | Hetero-dimer
QSQE | 0.00
Method | X-ray, 1.80 Å
Seq Similarity | 0.64
Coverage | 1.00
Range | 18-133

Ligand | Added to Model | Description
--- | --- | ---
ZN | ✓ | ZINC ION
ZN | ✓ | ZINC ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
BDF | ✕ - Binding site not conserved. | beta-D-fructopyranose
BDF | ✕ - Binding site not conserved. | beta-D-fructopyranose
SAM | ✕ - Binding site not conserved. | S-ADENOSYLMETHIONINE
SO3 | ✕ - Not in contact with model. | SULFITE ION

Model-Template Alignment

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