Homology Modelling Report
Model Building Report
This document lists the results for the homology modelling project "3C-like proteinase nsp5 (3CL-PRO) | P0DTD1 PRO_0000449623" submitted to SWISS-MODEL workspace on May 5, 2023, 9:34 p.m..The submitted primary amino acid sequence is given in Table T1.
If you use any results in your research, please cite the relevant publications:
- Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, Gumienny R, Heer FT, de Beer TAP, Rempfer C, Bordoli L, Lepore R, Schwede TSWISS-MODEL: homology modelling of protein structures and complexes.Nucleic Acids Res 46, W296-W303. (2018)
29788355
10.1093/nar/gky427 - Bienert S, Waterhouse A, de Beer TAP, Tauriello G, Studer G, Bordoli L, Schwede TThe SWISS-MODEL Repository - new features and functionality.Nucleic Acids Res 45, D313-D319. (2017)2789967210.1093/nar/gkw1132
- Studer G, Tauriello G, Bienert S, Biasini M, Johner N, Schwede TProMod3 - A versatile homology modelling toolbox.PLOS Comp Biol 17(1), e1008667. (2021)3350798010.1371/journal.pcbi.1008667
- Studer G, Rempfer C, Waterhouse AM, Gumienny R, Haas J, Schwede TQMEANDisCo - distance constraints applied on model quality estimation.Bioinformatics 36, 1765-1771. (2020)3169731210.1093/bioinformatics/btz828
- Bertoni M, Kiefer F, Biasini M, Bordoli L, Schwede TModeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology.Scientific Reports 7. (2017)2887468910.1038/s41598-017-09654-8
Results
The SWISS-MODEL template library (SMTL version 2023-05-05, PDB release 2023-04-28) was searched with for evolutionary related structures matching the target sequence in Table T1. For details on the template search, see Materials and Methods. Overall 2024 templates were found (Table T2).
Models
The following models were built (see Materials and Methods "Model Building"):
Model #02 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
|---|---|---|---|---|---|---|
|
PDB | ProMod3 3.3.0 | homo-dimer (matching prediction) |
2 x T8J: 1-[4-(thiophene-2-carbonyl)piperazin-1-yl]ethan-1-one;
|
0.97 | 0.91 ± 0.05 |
|
|
| Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
|---|---|---|---|---|---|---|---|---|---|---|
| 5rfv.1.B | 100.00 | homo-dimer | 0.95 | HHblits | X-ray | 1.48Å | 0.63 | 1 - 304 | 1.00 | 3C-like proteinase |
Included Ligands
| Ligand | Description |
|---|---|
| 2 x T8J | 1-[4-(thiophene-2-carbonyl)piperazin-1-yl]ethan-1-one |
Excluded ligands
| Ligand Name.Number | Reason for Exclusion | Description |
|---|---|---|
| DMS.1 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.2 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.3 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.5 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.6 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.7 | Not biologically relevant. | DIMETHYL SULFOXIDE |
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
5rfv.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
5rfv.1.B SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
5rfv.1.B YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
5rfv.1.B PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
5rfv.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
5rfv.1.B SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
5rfv.1.B YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
5rfv.1.B PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Model #04 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
|---|---|---|---|---|---|---|
|
PDB | ProMod3 3.3.0 | homo-dimer (matching prediction) |
2 x HWH: ~{N}-[2-(5-fluoranyl-1~{H}-indol-3-yl)ethyl]ethanamide;
|
0.97 | 0.91 ± 0.05 |
|
|
| Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
|---|---|---|---|---|---|---|---|---|---|---|
| 5r7z.1.B | 100.00 | homo-dimer | 0.97 | HHblits | X-ray | 1.59Å | 0.63 | 1 - 304 | 1.00 | 3C-like proteinase |
Included Ligands
| Ligand | Description |
|---|---|
| 2 x HWH | ~{N}-[2-(5-fluoranyl-1~{H}-indol-3-yl)ethyl]ethanamide |
Excluded ligands
| Ligand Name.Number | Reason for Exclusion | Description |
|---|---|---|
| DMS.1 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.2 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.3 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.5 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.6 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.7 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.8 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.10 | Not biologically relevant. | DIMETHYL SULFOXIDE |
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
5r7z.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
5r7z.1.B SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
5r7z.1.B YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
5r7z.1.B PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
5r7z.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
5r7z.1.B SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
5r7z.1.B YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
5r7z.1.B PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Model #05 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
|---|---|---|---|---|---|---|
|
PDB | ProMod3 3.3.0 | homo-dimer (matching prediction) |
None
|
0.97 | 0.89 ± 0.05 |
|
|
| Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
|---|---|---|---|---|---|---|---|---|---|---|
| 6lu7.1.B | 100.00 | homo-dimer | 0.99 | HHblits | X-ray | 2.16Å | 0.63 | 1 - 306 | 1.00 | 3C-like proteinase |
Excluded ligands
| Ligand Name.Number | Reason for Exclusion | Description |
|---|---|---|
| 02J-ALA-VAL-LEU-PJE-010.1 | Clashing with protein. | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE |
| 02J-ALA-VAL-LEU-PJE-010.2 | Clashing with protein. | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE |
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
6lu7.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
6lu7.1.B SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
6lu7.1.B YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
6lu7.1.B PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
6lu7.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
6lu7.1.B SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
6lu7.1.B YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
6lu7.1.B PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Model #06 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
|---|---|---|---|---|---|---|
|
PDB | ProMod3 3.3.0 | homo-dimer (matching prediction) |
2 x DTZ: ZINC(II)HYDROGENSULFIDE;
|
0.96 | 0.89 ± 0.05 |
|
|
| Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
|---|---|---|---|---|---|---|---|---|---|---|
| 2z9j.1.A | 96.08 | homo-dimer | 0.95 | HHblits | X-ray | 1.95Å | 0.62 | 1 - 302 | 1.00 | 3C-like proteinase |
Included Ligands
| Ligand | Description |
|---|---|
| 2 x DTZ | ZINC(II)HYDROGENSULFIDE |
Excluded ligands
| Ligand Name.Number | Reason for Exclusion | Description |
|---|---|---|
| DMS.1 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.2 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.3 | Not biologically relevant. | DIMETHYL SULFOXIDE |
| DMS.4 | Not biologically relevant. | DIMETHYL SULFOXIDE |
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
2z9j.1.A SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
2z9j.1.A SMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
2z9j.1.A YMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
2z9j.1.A PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
2z9j.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
2z9j.1.B SMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
2z9j.1.B YMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
2z9j.1.B PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ
Model #01 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
|---|---|---|---|---|---|---|
|
PDB | ProMod3 3.3.0 | homo-dimer (matching prediction) |
1 x GLY: GLYCINE;
2 x O6K: ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate; |
0.95 | 0.88 ± 0.05 |
|
|
| Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
|---|---|---|---|---|---|---|---|---|---|---|
| 6y2g.1.A | 100.00 | homo-dimer | 1.00 | HHblits | X-ray | 2.20Å | 0.63 | 1 - 301 | 1.00 | 3C-like proteinase |
Included Ligands
| Ligand | Description |
|---|---|
| 1 x GLY | GLYCINE |
| 2 x O6K | ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate |
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
6y2g.1.A SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
6y2g.1.A SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
6y2g.1.A YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
6y2g.1.A PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
6y2g.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
6y2g.1.B SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
6y2g.1.B YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
6y2g.1.B PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Model #03 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
|---|---|---|---|---|---|---|
|
PDB | ProMod3 3.3.0 | homo-dimer (matching prediction) |
2 x AZP: (5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZYL-14-HYDROXY-5-ISOBUTYL-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,11-TETRAAZAPENTADECAN-15-OATE;
|
0.95 | 0.87 ± 0.05 |
|
|
| Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
|---|---|---|---|---|---|---|---|---|---|---|
| 2a5i.1.A | 96.08 | homo-dimer | 0.92 | HHblits | X-ray | 1.88Å | 0.62 | 1 - 306 | 1.00 | 3C-like peptidase |
Included Ligands
| Ligand | Description |
|---|---|
| 2 x AZP | (5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZYL-14-HYDROXY-5-ISOBUTYL-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,11-TETRAAZAPENTADECAN-15-OATE |
Excluded ligands
| Ligand Name.Number | Reason for Exclusion | Description |
|---|---|---|
| EDO.2 | Not biologically relevant. | 1,2-ETHANEDIOL |
| EDO.5 | Not biologically relevant. | 1,2-ETHANEDIOL |
| GOL.3 | Not biologically relevant. | GLYCEROL |
| GOL.6 | Not biologically relevant. | GLYCEROL |
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
2a5i.1.A SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
2a5i.1.A SMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
2a5i.1.A YMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
2a5i.1.A PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ
Target SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH
2a5i.1.B SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGH
Target SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFC
2a5i.1.B SMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFC
Target YMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
2a5i.1.B YMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Target PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
2a5i.1.B PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ
Materials and Methods
Template Search
Template search with has been performed against the SWISS-MODEL template library (SMTL, last update: 2023-05-05, last included PDB release: 2023-04-28).
Model Building
Models are built based on the target-template alignment using ProMod3 (Studer et al.). Coordinates which are conserved between the target and the template are copied from the template to the model. Insertions and deletions are remodelled using a fragment library. Side chains are then rebuilt. Finally, the geometry of the resulting model is regularized by using a force field.
Model Quality Estimation
The global and per-residue model quality has been assessed using the QMEAN scoring function (Studer et al.).
Ligand Modelling
Ligands present in the template structure are transferred by homology to the model when the following criteria are met: (a) The ligands are annotated as biologically relevant in the template library, (b) the ligand is in contact with the model, (c) the ligand is not clashing with the protein, (d) the residues in contact with the ligand are conserved between the target and the template. If any of these four criteria is not satisfied, a certain ligand will not be included in the model. The model summary includes information on why and which ligand has not been included.
Oligomeric State Conservation
The quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. The method (Bertoni et al.) is based on a supervised machine learning algorithm, Support Vector Machines (SVM), which combines interface conservation, structural clustering, and other template features to provide a quaternary structure quality estimate (QSQE). The QSQE score is a number between 0 and 1, reflecting the expected accuracy of the interchain contacts for a model built based a given alignment and template. Higher numbers indicate higher reliability. This complements the GMQE score which estimates the accuracy of the tertiary structure of the resulting model.
References
- Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TLBLAST+: architecture and applications.BMC Bioinformatics, 10, 421-430. (2009)2000350010.1186/1471-2105-10-421
- Steinegger M, Meier M, Mirdita M, Vöhringer H, Haunsberger SJ, Söding JHH-suite3 for fast remote homology detection and deep protein annotation.BMC Bioinformatics 20, 473. (2019)3152111010.1186/s12859-019-3019-7
Table T1:
Primary amino acid sequence for which templates were searched and models were built.
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK
YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI
TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC
SGVTFQ
YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI
TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC
SGVTFQ
Table T2:
| Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Coverage | Description |
|---|---|---|---|---|---|---|---|---|---|
| 6lu7.1.B | 100.00 | homo-dimer | 0.99 | HHblits | X-ray | 2.16Å | 0.63 | 1.00 | 3C-like proteinase |
| 6y2g.1.B | 100.00 | homo-dimer | 1.00 | HHblits | X-ray | 2.20Å | 0.63 | 1.00 | 3C-like proteinase |
| 5ree.1.A | 100.00 | homo-dimer | 0.98 | HHblits | X-ray | 1.77Å | 0.63 | 1.00 | 3C-like proteinase |
| 5rea.1.A | 100.00 | homo-dimer | 0.98 | HHblits | X-ray | 1.63Å | 0.63 | 1.00 | 3C-like proteinase |
| 5r7z.1.B | 100.00 | homo-dimer | 0.97 | HHblits | X-ray | 1.59Å | 0.63 | 1.00 | 3C-like proteinase |
| 5rfe.1.B | 100.00 | homo-dimer | 0.96 | HHblits | X-ray | 1.46Å | 0.63 | 1.00 | 3C-like proteinase |
| 5rgk.1.A | 100.00 | homo-dimer | 0.96 | HHblits | X-ray | 1.43Å | 0.63 | 1.00 | 3C-like proteinase |
| 5r8t.1.A | 100.00 | homo-dimer | 0.96 | HHblits | X-ray | 1.27Å | 0.63 | 1.00 | 3C-like proteinase |
| 5r8t.1.B | 100.00 | homo-dimer | 0.96 | HHblits | X-ray | 1.27Å | 0.63 | 1.00 | 3C-like proteinase |
| 5rgo.1.B | 100.00 | homo-dimer | 0.96 | HHblits | X-ray | 1.74Å | 0.63 | 1.00 | 3C-like proteinase |
| 5rfv.1.B | 100.00 | homo-dimer | 0.95 | HHblits | X-ray | 1.48Å | 0.63 | 1.00 | 3C-like proteinase |
| 5rfl.1.B | 100.00 | homo-dimer | 0.95 | HHblits | X-ray | 1.64Å | 0.63 | 1.00 | 3C-like proteinase |
| 2z9j.1.A | 96.08 | homo-dimer | 0.95 | HHblits | X-ray | 1.95Å | 0.62 | 1.00 | 3C-like proteinase |
| 2a5i.1.A | 96.08 | homo-dimer | 0.92 | HHblits | X-ray | 1.88Å | 0.62 | 1.00 | 3C-like peptidase |
The table above shows the top 14 filtered templates. A further 1,938 templates were found which were considered to be less suitable for modelling than the filtered list.
1f5t.1.C, 1f5t.1.D, 1i1g.1.A, 1i1g.1.B, 1j75.1.A, 1ku9.1.A, 1lnw.1.A, 1lnw.1.B, 1lnw.2.A, 1lnw.2.B, 1lnw.3.A, 1lnw.3.B, 1lnw.4.A, 1lnw.4.B, 1lq1.1.C, 1lq1.1.D, 1lq1.2.D, 1lvb.1.A, 1lvo.1.A, 1lvo.1.B, 1lvo.2.A, 1lvo.2.B, 1lvo.3.B, 1mj9.1.A, 1mja.1.A, 1mjb.1.A, 1mkm.1.A, 1mkm.1.B, 1nd9.1.A, 1nex.2.A, 1oyi.1.A, 1p4x.1.A, 1p9s.1.A, 1q2w.1.A, 1q2w.1.B, 1q31.1.A, 1q31.2.A, 1r1t.1.A, 1r1t.1.B, 1ri7.1.A, 1s3j.1.A, 1s3j.1.B, 1sfu.1.A, 1sfu.1.B, 1sfx.1.A, 1sfx.1.B, 1smt.1.A, 1ub9.1.A, 1uj1.1.B, 1uk3.1.A, 1uk3.1.B, 1wi9.1.A, 1xd7.1.A, 1xn7.1.A, 1ylf.1.A, 1ylf.1.B, 1ylf.1.C, 1z1i.1.A, 1z1j.1.A, 1z1j.1.B, 1z67.1.A, 2a5k.1.A, 2alv.1.A, 2amd.1.A, 2amd.1.B, 2amp.1.A, 2bx3.1.B, 2bx4.1.B, 2c3s.1.A, 2cfx.1.A, 2cg4.1.A, 2cyy.1.A, 2d1h.1.A, 2d1h.1.B, 2dbb.1.A, 2dbb.1.B, 2du9.1.A, 2duc.1.A, 2e1c.1.D, 2e7w.1.A, 2e7x.1.A, 2efn.1.A, 2efo.1.A, 2efp.1.A, 2efq.1.A, 2ek5.1.B, 2ek5.3.A, 2ek5.4.A, 2ek5.4.B, 2eth.1.A, 2eth.1.B, 2fbi.1.A, 2gt8.1.A, 2gtb.1.A, 2heo.1.A, 2heo.1.B, 2htj.1.A, 2ia0.1.A, 2ia0.1.B, 2ivm.1.A, 2ivm.1.B, 2jt1.1.A, 2k02.1.A, 2k53.1.A, 2k7x.1.A, 2l02.1.A, 2l02.1.B, 2l4a.1.A, 2l54.1.A, 2lfc.1.A, 2liz.1.A, 2lnb.1.A, 2mlg.1.A, 2obp.1.A, 2op9.1.A, 2op9.1.B, 2p5v.1.A, 2p5v.1.C, 2p5v.1.D, 2p6s.1.B, 2p6s.1.D, 2p6s.1.F, 2p6t.1.E, 2p6t.1.G, 2p6t.1.H, 2pmh.1.A, 2pn6.1.A, 2pwx.1.A, 2q6d.1.A, 2q6d.1.B, 2q6d.2.A, 2q6f.1.B, 2q6g.1.A, 2q6g.1.B, 2qc2.1.A, 2qc2.1.B, 2qcy.1.A, 2qiq.1.A, 2qz8.1.A, 2rvc.1.A, 2v79.1.A, 2v79.1.B, 2vj1.1.A, 2vj1.1.B, 2w24.1.A, 2w24.1.B, 2w25.1.A, 2w25.1.B, 2w29.1.A, 2w29.1.B, 2wkj.1.A, 2xvc.1.A, 2y75.1.A, 2y75.1.B, 2yna.1.A, 2z9j.1.B, 2zny.1.A, 2zny.1.B, 2zny.2.A, 2zny.2.B, 2zny.3.A, 2zny.4.A, 2zny.4.B, 2znz.1.A, 2znz.1.B, 2znz.1.D, 2zu2.1.A, 3aw1.1.A, 3aw1.1.B, 3bj6.1.A, 3d23.1.A, 3d23.1.C, 3d62.1.A, 3dpl.1.A, 3dqv.1.B, 3dqv.3.B, 3e91.1.A, 3ea7.1.B, 3ea8.1.A, 3ea9.1.A, 3ebn.1.A, 3ebn.2.A, 3ech.1.A, 3ech.1.B, 3eco.1.A, 3eco.1.B, 3f9e.1.A, 3f9f.1.A, 3f9g.1.A, 3f9g.1.B, 3f9h.1.B, 3fzd.1.A, 3gfl.1.A, 3i4p.1.A, 3i71.1.A, 3i71.1.B, 3iwm.1.E, 3iwm.1.F, 3iwm.1.G, 3iwm.1.H, 3k69.1.A, 3ke2.1.A, 3ke2.2.A, 3lwf.1.A, 3m3s.1.A, 3m3t.1.A, 3m3v.1.A, 3m3v.1.B, 3mex.1.A, 3mex.1.B, 3mks.2.A, 3mks.3.A, 3mmg.1.A, 3mmg.2.A, 3o3k.1.A, 3q5f.1.A, 3qph.1.A, 3qpt.1.A, 3s2w.1.A, 3s2w.1.B, 3s2w.2.A, 3s2w.2.B, 3s2w.3.A, 3s2w.3.B, 3s2w.4.A, 3s2w.4.B, 3sna.1.A, 3t8r.1.A, 3tlo.1.A, 3tlo.1.B, 3to6.1.A, 3to9.1.A, 3v7d.1.A, 3v7d.2.A, 3vb2.1.A, 3vb2.1.B, 3vb3.1.A, 3vod.1.A, 3vod.1.B, 4awx.1.B, 4ch7.1.A, 4czd.1.A, 4czd.1.B, 4czd.2.A, 4czd.2.B, 4egy.1.A, 4egz.1.A, 4egz.1.B, 4f49.1.A, 4fht.1.A, 4fht.1.B, 4g9y.1.A, 4ggg.1.A, 4ggg.2.A, 4ham.1.A, 4hi3.1.A, 4hi3.1.B, 4hob.1.A, 4hob.1.B, 4hob.2.A, 4jba.1.A, 4kmf.1.A, 4lb5.1.A, 4lb6.1.A, 4mds.1.A, 4pcq.1.A, 4pcq.1.B, 4pcq.2.A, 4pcq.2.B, 4pql.1.A, 4pql.1.B, 4pt7.1.A, 4rs8.1.A, 4rs8.1.B, 4rsp.2.A, 4tww.1.B, 4u0y.1.A, 4u0y.1.B, 4u0y.1.D, 4wmd.1.A, 4wmd.1.B, 4wme.1.A, 4wmf.2.C, 4xfq.1.A, 4xfq.1.B, 4ylu.1.A, 4ylu.1.B, 4yo9.1.B, 4yog.1.B, 4yoi.1.A, 4zro.1.A, 4zro.1.B, 4zro.1.C, 4zro.1.D, 4zuh.1.A, 4zuh.1.B, 4zzl.1.A, 4zzl.1.B, 5b6o.1.A, 5b6o.1.B, 5bpd.1.A, 5bpd.1.C, 5bqt.1.A, 5bqt.1.B, 5bqt.1.C, 5bqt.1.D, 5c0t.1.A, 5c0t.2.A, 5c17.1.A, 5c3n.1.A, 5c3n.1.B, 5d4r.2.A, 5d4s.2.B, 5eu8.1.A, 5gwy.1.A, 5gwy.1.B, 5gwz.1.A, 5hsm.1.A, 5hso.1.A, 5hyo.1.A, 5hyo.1.B, 5j6x.1.A, 5k1y.1.A, 5k1y.1.B, 5k1y.1.C, 5k1y.1.D, 5k1y.1.G, 5k1y.1.H, 5k5q.1.A, 5k5q.1.B, 5k5q.1.C, 5k5q.1.D, 5k5q.1.G, 5k5q.1.H, 5kbj.1.A, 5kbj.1.B, 5kbj.1.C, 5kbj.1.D, 5kbj.2.A, 5kbj.2.B, 5kbj.2.C, 5kbj.2.D, 5kk1.1.A, 5kvr.1.A, 5n07.1.A, 5nh0.1.A, 5r7y.1.A, 5r7y.1.B, 5r7z.1.A, 5r80.1.A, 5r80.1.B, 5r81.1.A, 5r81.1.B, 5r82.1.A, 5r82.1.B, 5r83.1.A, 5r83.1.B, 5r84.1.A, 5r84.1.B, 5re4.1.A, 5re4.1.B, 5re5.1.A, 5re5.1.B, 5re6.1.A, 5re6.1.B, 5re7.1.A, 5re7.1.B, 5re8.1.A, 5re8.1.B, 5re9.1.A, 5re9.1.B, 5rea.1.B, 5reb.1.A, 5reb.1.B, 5rec.1.A, 5rec.1.B, 5red.1.A, 5red.1.B, 5ree.1.B, 5ref.1.A, 5ref.1.B, 5reg.1.A, 5reg.1.B, 5reh.1.A, 5reh.1.B, 5rei.1.A, 5rei.1.B, 5rej.1.A, 5rej.1.B, 5rek.1.A, 5rek.1.B, 5rel.1.A, 5rel.1.B, 5rem.1.A, 5rem.1.B, 5ren.1.A, 5ren.1.B, 5reo.1.A, 5reo.1.B, 5rep.1.A, 5rep.1.B, 5rer.1.A, 5rer.1.B, 5res.1.A, 5res.1.B, 5ret.1.A, 5ret.1.B, 5reu.1.A, 5reu.1.B, 5rev.1.A, 5rev.1.B, 5rew.1.A, 5rew.1.B, 5rex.1.A, 5rex.1.B, 5rey.1.A, 5rey.1.B, 5rez.1.A, 5rez.1.B, 5rf0.1.A, 5rf0.1.B, 5rf1.1.A, 5rf1.1.B, 5rf2.1.A, 5rf2.1.B, 5rf3.1.A, 5rf3.1.B, 5rf4.1.A, 5rf4.1.B, 5rf5.1.A, 5rf5.1.B, 5rf6.1.A, 5rf6.1.B, 5rf7.1.A, 5rf7.1.B, 5rf8.1.A, 5rf8.1.B, 5rf9.1.A, 5rf9.1.B, 5rfa.1.A, 5rfa.1.B, 5rfb.1.A, 5rfb.1.B, 5rfc.1.A, 5rfc.1.B, 5rfd.1.A, 5rfd.1.B, 5rfe.1.A, 5rff.1.A, 5rff.1.B, 5rfg.1.A, 5rfg.1.B, 5rfh.1.A, 5rfh.1.B, 5rfi.1.A, 5rfi.1.B, 5rfj.1.A, 5rfj.1.B, 5rfk.1.A, 5rfk.1.B, 5rfl.1.A, 5rfm.1.A, 5rfm.1.B, 5rfn.1.A, 5rfn.1.B, 5rfo.1.A, 5rfo.1.B, 5rfp.1.A, 5rfp.1.B, 5rfq.1.A, 5rfq.1.B, 5rfr.1.A, 5rfr.1.B, 5rfs.1.A, 5rfs.1.B, 5rft.1.A, 5rft.1.B, 5rfu.1.A, 5rfu.1.B, 5rfv.1.A, 5rfw.1.A, 5rfw.1.B, 5rfx.1.A, 5rfx.1.B, 5rfy.1.A, 5rfy.1.B, 5rfz.1.A, 5rfz.1.B, 5rg0.1.A, 5rg0.1.B, 5rg1.1.A, 5rg1.1.B, 5rg2.1.A, 5rg2.1.B, 5rg3.1.A, 5rg3.1.B, 5rgg.1.A, 5rgg.1.B, 5rgh.1.A, 5rgh.1.B, 5rgi.1.A, 5rgi.1.B, 5rgj.1.A, 5rgj.1.B, 5rgk.1.B, 5rgl.1.A, 5rgl.1.B, 5rgm.1.A, 5rgm.1.B, 5rgn.1.A, 5rgn.1.B, 5rgo.1.A, 5rgp.1.A, 5rgp.1.B, 5rgq.1.A, 5rgq.1.B, 5rgr.1.A, 5rgr.1.B, 5rgs.1.A, 5rgs.1.B, 5rgt.1.A, 5rgt.1.B, 5rgu.1.A, 5rgu.1.B, 5rgv.1.A, 5rgv.1.B, 5rgw.1.A, 5rgw.1.B, 5rgx.1.A, 5rgx.1.B, 5rgy.1.A, 5rgy.1.B, 5rgz.1.A, 5rgz.1.B, 5rh0.1.A, 5rh0.1.B, 5rh1.1.A, 5rh1.1.B, 5rh2.1.A, 5rh2.1.B, 5rh3.1.A, 5rh3.1.B, 5rh4.1.A, 5rh4.1.B, 5rh5.1.A, 5rh5.1.B, 5rh6.1.A, 5rh6.1.B, 5rh7.1.A, 5rh7.1.B, 5rh8.1.A, 5rh8.1.B, 5rh9.1.A, 5rh9.1.B, 5rha.1.A, 5rha.1.B, 5rhb.1.A, 5rhb.1.B, 5rhc.1.A, 5rhc.1.B, 5rhd.1.A, 5rhd.1.B, 5rhe.1.A, 5rhe.1.B, 5rhf.1.A, 5rhf.1.B, 5rl0.1.A, 5rl0.1.B, 5rl1.1.A, 5rl1.1.B, 5rl2.1.A, 5rl2.1.B, 5rl3.1.A, 5rl3.1.B, 5rl4.1.A, 5rl4.1.B, 5rl5.1.A, 5rl5.1.B, 5sml.1.A, 5sml.1.B, 5smm.1.A, 5smm.1.B, 5smn.1.A, 5smn.1.B, 5wkk.1.A, 5x7z.1.A, 5x80.1.A, 5x80.1.B, 5x80.2.A, 5x80.2.B, 5yhx.1.A, 5yhx.1.B, 5yhx.3.A, 5yhx.3.B, 5yhy.1.A, 5yi0.1.A, 5yi1.1.A, 5yi2.1.A, 5yi2.1.B, 5yi2.2.A, 5yi2.2.B, 5yi2.3.A, 5yi2.3.B, 5yi2.4.A, 5yi2.4.B, 5yi3.1.A, 5yi3.1.B, 5yi3.2.A, 5yi3.2.B, 5yi3.4.A, 5yi3.4.B, 5zqg.1.A, 5zqg.1.B, 6fv1.1.A, 6hsd.1.A, 6hsd.1.B, 6hsm.1.A, 6hsm.1.B, 6hsm.2.B, 6hsm.3.A, 6hsm.3.B, 6jij.1.A, 6jij.2.A, 6lu7.1.A, 6lze.1.A, 6lze.1.B, 6m03.1.A, 6m03.1.B, 6m0k.1.A, 6m0k.1.B, 6m2n.1.A, 6m2n.1.B, 6m2n.2.A, 6m2n.2.B, 6m2q.1.A, 6m2q.1.B, 6nrr.1.B, 6ns1.1.A, 6tey.1.A, 6w2a.1.A, 6w2a.1.B, 6w63.1.A, 6w63.1.B, 6w79.1.A, 6w79.1.B, 6w81.1.A, 6w81.1.B, 6wnp.1.A, 6wnp.1.B, 6wqf.1.A, 6wqf.1.B, 6wtj.1.A, 6wtj.1.B, 6wtk.1.A, 6wtk.1.B, 6wtm.1.A, 6wtm.1.B, 6wtt.1.A, 6wtt.1.B, 6wtt.2.A, 6wtt.2.B, 6xa4.1.A, 6xa4.1.B, 6xb0.1.A, 6xb0.1.B, 6xb1.1.A, 6xb1.1.B, 6xb2.1.A, 6xb2.1.B, 6xbg.1.A, 6xbg.1.B, 6xbh.1.A, 6xbh.1.B, 6xbi.1.A, 6xbi.1.B, 6xch.1.A, 6xch.1.B, 6xfn.1.A, 6xfn.1.B, 6xhm.1.A, 6xhm.1.B, 6xhn.1.A, 6xhn.1.B, 6xhu.1.A, 6xhu.1.B, 6xkf.1.A, 6xkf.1.B, 6xkh.1.A, 6xkh.1.B, 6xmk.1.A, 6xmk.1.B, 6xoa.1.A, 6xoa.1.B, 6xoa.2.A, 6xoa.2.B, 6xqs.1.A, 6xqs.1.B, 6xqt.1.A, 6xqt.1.B, 6xqu.1.A, 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