Model Building Report

This document lists the results for the homology modelling project "Papain-like protease nsp3 | P0DTD1 PRO_0000449621" submitted to SWISS-MODEL workspace on May 5, 2023, 9:33 p.m..The submitted primary amino acid sequence is given in Table T1.

If you use any results in your research, please cite the relevant publications:

• Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, Gumienny R, Heer FT, de Beer TAP, Rempfer C, Bordoli L, Lepore R, Schwede T
  SWISS-MODEL: homology modelling of protein structures and complexes.
  Nucleic Acids Res 46, W296-W303. (2018) 2978835510.1093/nar/gky427
• Bienert S, Waterhouse A, de Beer TAP, Tauriello G, Studer G, Bordoli L, Schwede T
  The SWISS-MODEL Repository - new features and functionality.
  Nucleic Acids Res 45, D313-D319. (2017) 2789967210.1093/nar/gkw1132
• Studer G, Tauriello G, Bienert S, Biasini M, Johner N, Schwede T
  ProMod3 - A versatile homology modelling toolbox.
  PLOS Comp Biol 17(1), e1008667. (2021) 3350798010.1371/journal.pcbi.1008667
• Studer G, Rempfer C, Waterhouse AM, Gumienny R, Haas J, Schwede T
  QMEANDisCo - distance constraints applied on model quality estimation.
  Bioinformatics 36, 1765-1771. (2020) 3169731210.1093/bioinformatics/btz828
• Bertoni M, Kiefer F, Biasini M, Bordoli L, Schwede T
  Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology.
  Scientific Reports 7. (2017) 2887468910.1038/s41598-017-09654-8

Results

The SWISS-MODEL template library (SMTL version 2023-05-05, PDB release 2023-04-28) was searched with for evolutionary related structures matching the target sequence in Table T1. For details on the template search, see Materials and Methods. Overall 1456 templates were found (Table T2).

Models

The following model was built (see Materials and Methods "Model Building"):

Model #03	File	Built with	Oligo-State	Ligands	GMQE	QMEANDisCo Global
	PDB	ProMod3 3.3.0	monomer	None	0.05	0.71 ± 0.11

Template	Seq Identity	Oligo-state	QSQE	Found by	Method	Resolution	Seq Similarity	Range	Coverage	Description
2kqw.1.A	80.22	monomer	0.00	BLAST	NMR	-	0.55	678 - 732	0.09	Non-structural protein 3

The template contained no ligands.

Target    APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
2kqw.1.A  --------------------------------------------------------------------------------

Target    EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
2kqw.1.A  --------------------------------------------------------------------------------

Target    WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
2kqw.1.A  --------------------------------------------------------------------------------

Target    NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
2kqw.1.A  --------------------------------------------------------------------------------

Target    NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
2kqw.1.A  --------------------------------------------------------------------------------

Target    KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
2kqw.1.A  --------------------------------------------------------------------------------

Target    VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
2kqw.1.A  ----------------------------------------------------------------------GTVSWNLREM

Target    LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
2kqw.1.A  LAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFN

Target    LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
2kqw.1.A  LEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHT

Target    -SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKT
2kqw.1.A  LESPVEFHLDGEV-------------------------------------------------------------------

Target    FYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQD
2kqw.1.A  --------------------------------------------------------------------------------

Target    AYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE
2kqw.1.A  --------------------------------------------------------------------------------

Target    QFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSS
2kqw.1.A  --------------------------------------------------------------------------------

Target    EYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKF
2kqw.1.A  --------------------------------------------------------------------------------

Target    ADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTK
2kqw.1.A  --------------------------------------------------------------------------------

Target    PVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA
2kqw.1.A  --------------------------------------------------------------------------------

Target    AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLL
2kqw.1.A  --------------------------------------------------------------------------------

Target    QLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNL
2kqw.1.A  --------------------------------------------------------------------------------

Target    GMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF
2kqw.1.A  --------------------------------------------------------------------------------

Target    FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNR
2kqw.1.A  --------------------------------------------------------------------------------

Target    ATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVK
2kqw.1.A  --------------------------------------------------------------------------------

Target    NGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV
2kqw.1.A  --------------------------------------------------------------------------------

Target    SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKL
2kqw.1.A  --------------------------------------------------------------------------------

Target    SHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNN
2kqw.1.A  --------------------------------------------------------------------------------

Target    LPFKLTCATTRQVVNVVTTKIALKGG
2kqw.1.A  --------------------------

---

Materials and Methods

Template Search

Template search with has been performed against the SWISS-MODEL template library (SMTL, last update: 2023-05-05, last included PDB release: 2023-04-28).

Model Building

Models are built based on the target-template alignment using ProMod3 (Studer et al.). Coordinates which are conserved between the target and the template are copied from the template to the model. Insertions and deletions are remodelled using a fragment library. Side chains are then rebuilt. Finally, the geometry of the resulting model is regularized by using a force field.

Model Quality Estimation

The global and per-residue model quality has been assessed using the QMEAN scoring function (Studer et al.).

Ligand Modelling

Ligands present in the template structure are transferred by homology to the model when the following criteria are met: (a) The ligands are annotated as biologically relevant in the template library, (b) the ligand is in contact with the model, (c) the ligand is not clashing with the protein, (d) the residues in contact with the ligand are conserved between the target and the template. If any of these four criteria is not satisfied, a certain ligand will not be included in the model. The model summary includes information on why and which ligand has not been included.

Oligomeric State Conservation

The quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. The method (Bertoni et al.) is based on a supervised machine learning algorithm, Support Vector Machines (SVM), which combines interface conservation, structural clustering, and other template features to provide a quaternary structure quality estimate (QSQE). The QSQE score is a number between 0 and 1, reflecting the expected accuracy of the interchain contacts for a model built based a given alignment and template. Higher numbers indicate higher reliability. This complements the GMQE score which estimates the accuracy of the tertiary structure of the resulting model.

References

• Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL
  BLAST+: architecture and applications.
  BMC Bioinformatics, 10, 421-430. (2009) 2000350010.1186/1471-2105-10-421
• Steinegger M, Meier M, Mirdita M, Vöhringer H, Haunsberger SJ, Söding J
  HH-suite3 for fast remote homology detection and deep protein annotation.
  BMC Bioinformatics 20, 473. (2019) 3152111010.1186/s12859-019-3019-7

Table T1:

Primary amino acid sequence for which templates were searched and models were built.

Table T2:

Template	Seq Identity	Oligo-state	QSQE	Found by	Method	Resolution	Seq Similarity	Coverage	Description
6wuu.4.A	99.69	monomer	-	BLAST	X-ray	2.79Å	0.62	0.16	Non-structural protein 3
6wuu.1.A	99.69	monomer	-	BLAST	X-ray	2.79Å	0.62	0.16	Non-structural protein 3
6wuu.2.A	99.69	monomer	-	BLAST	X-ray	2.79Å	0.62	0.16	Non-structural protein 3
7cmd.2.A	100.00	monomer	-	HHblits	X-ray	2.59Å	0.63	0.16	Non-structural protein 3
6w9c.1.A	100.00	homo-trimer	0.26	HHblits	X-ray	2.70Å	0.63	0.16	Non-structural protein 3
8eua.1.A	99.69	monomer	-	BLAST	X-ray	3.10Å	0.62	0.16	Papain-like protease nsp3
7cmd.4.A	100.00	monomer	-	HHblits	X-ray	2.59Å	0.63	0.16	Non-structural protein 3
7cmd.1.A	100.00	monomer	-	HHblits	X-ray	2.59Å	0.63	0.16	Non-structural protein 3
7cmd.3.A	100.00	monomer	-	HHblits	X-ray	2.59Å	0.63	0.16	Non-structural protein 3
5e6j.1.A	82.91	monomer	-	HHblits	X-ray	2.85Å	0.57	0.16	Replicase polyprotein 1ab
7lfu.1.A	82.91	monomer	-	HHblits	X-ray	2.29Å	0.57	0.16	papain-like protease
3e9s.1.A	82.86	monomer	-	HHblits	X-ray	2.50Å	0.57	0.16	Non-structural protein 3
3e9s.1.A	82.86	monomer	-	BLAST	X-ray	2.50Å	0.57	0.16	Non-structural protein 3
7lfv.2.A	82.91	monomer	-	HHblits	X-ray	2.23Å	0.57	0.16	papain-like protease
5e6j.2.A	82.91	monomer	-	HHblits	X-ray	2.85Å	0.57	0.16	Replicase polyprotein 1ab
7lfv.1.A	82.91	monomer	-	HHblits	X-ray	2.23Å	0.57	0.16	papain-like protease
3mj5.1.A	82.86	monomer	-	HHblits	X-ray	2.63Å	0.57	0.16	Replicase polyprotein 1a
8f2e.1.A	100.00	monomer	-	HHblits	X-ray	2.43Å	0.61	0.15	Papain-like protease nsp3
4m0w.1.A	82.39	monomer	-	HHblits	X-ray	1.40Å	0.56	0.16	Replicase polyprotein 1a
2w2g.1.A	75.00	homo-dimer	0.21	BLAST	X-ray	2.22Å	0.53	0.14	NON-STRUCTURAL PROTEIN 3
2wct.1.A	75.00	homo-dimer	0.19	BLAST	X-ray	2.79Å	0.53	0.14	NON-STRUCTURAL PROTEIN 3
2w2g.1.A	74.90	homo-dimer	0.21	HHblits	X-ray	2.22Å	0.53	0.14	NON-STRUCTURAL PROTEIN 3
2wct.1.A	74.90	homo-dimer	0.19	HHblits	X-ray	2.79Å	0.53	0.14	NON-STRUCTURAL PROTEIN 3
2w2g.1.B	75.00	homo-dimer	0.21	BLAST	X-ray	2.22Å	0.53	0.14	NON-STRUCTURAL PROTEIN 3
2w2g.1.B	74.90	homo-dimer	0.20	HHblits	X-ray	2.22Å	0.53	0.14	NON-STRUCTURAL PROTEIN 3
6ywk.4.A	100.00	monomer	-	BLAST	X-ray	2.20Å	0.61	0.09	NSP3 macrodomain
6z5t.1.A	100.00	monomer	-	BLAST	X-ray	1.57Å	0.61	0.09	Replicase polyprotein 1ab
6ywk.3.A	100.00	monomer	-	BLAST	X-ray	2.20Å	0.61	0.09	NSP3 macrodomain
2acf.4.A	72.94	monomer	-	HHblits	X-ray	1.40Å	0.52	0.09	Replicase polyprotein 1ab
2acf.4.A	73.37	monomer	-	BLAST	X-ray	1.40Å	0.52	0.09	Replicase polyprotein 1ab
6ywk.1.A	100.00	monomer	-	BLAST	X-ray	2.20Å	0.61	0.09	NSP3 macrodomain
7jme.1.A	100.00	monomer	-	BLAST	X-ray	1.55Å	0.61	0.09	Non-structural protein 3
7c33.1.A	100.00	monomer	-	BLAST	X-ray	3.83Å	0.61	0.09	Non-structural protein 3
2acf.2.A	72.94	monomer	-	HHblits	X-ray	1.40Å	0.52	0.09	Replicase polyprotein 1ab
6wey.1.A	100.00	monomer	-	BLAST	X-ray	0.95Å	0.61	0.09	Non-structural protein 3
2acf.2.A	73.37	monomer	-	BLAST	X-ray	1.40Å	0.52	0.09	Replicase polyprotein 1ab
6woj.1.A	100.00	monomer	-	BLAST	X-ray	2.20Å	0.61	0.09	Non-structural protein 3
2fav.2.A	73.81	monomer	-	BLAST	X-ray	1.80Å	0.53	0.09	Replicase polyprotein 1ab (pp1ab) (ORF1AB)
2fav.1.A	73.81	monomer	-	BLAST	X-ray	1.80Å	0.53	0.09	Replicase polyprotein 1ab (pp1ab) (ORF1AB)
2acf.1.A	73.37	monomer	-	BLAST	X-ray	1.40Å	0.52	0.09	Replicase polyprotein 1ab
2acf.1.A	72.94	monomer	-	HHblits	X-ray	1.40Å	0.52	0.09	Replicase polyprotein 1ab
7xc4.1.B	100.00	homo-dimer	0.24	HHblits	X-ray	2.10Å	0.60	0.06	Papain-like protease nsp3
7xc3.1.B	100.00	homo-dimer	0.25	HHblits	X-ray	1.70Å	0.61	0.06	Papain-like protease nsp3
7xc4.1.A	100.00	homo-dimer	0.25	BLAST	X-ray	2.10Å	0.60	0.06	Papain-like protease nsp3
7xc4.1.A	100.00	homo-dimer	0.24	HHblits	X-ray	2.10Å	0.60	0.06	Papain-like protease nsp3
7xc3.1.A	100.00	homo-dimer	0.25	HHblits	X-ray	1.70Å	0.61	0.06	Papain-like protease nsp3
2kqv.1.A	78.13	monomer	-	HHblits	NMR	NA	0.55	0.10	Non-structural protein 3
7lgo.2.A	100.00	monomer	-	BLAST	X-ray	2.45Å	0.64	0.06	Non-structural protein 3
7lgo.2.A	100.00	monomer	-	HHblits	X-ray	2.45Å	0.64	0.06	Non-structural protein 3
7lgo.1.A	100.00	monomer	-	BLAST	X-ray	2.45Å	0.64	0.06	Non-structural protein 3
7lgo.1.A	100.00	monomer	-	HHblits	X-ray	2.45Å	0.64	0.06	Non-structural protein 3
2k87.1.A	81.74	monomer	-	BLAST	NMR	NA	0.58	0.06	Non-structural protein 3 of Replicase polyprotein 1a
2kqw.1.A	78.13	monomer	-	HHblits	NMR	NA	0.55	0.10	Non-structural protein 3
2kqw.1.A	80.22	monomer	-	BLAST	NMR	NA	0.55	0.09	Non-structural protein 3

The table above shows the top 54 filtered templates. A further 1,299 templates were found which were considered to be less suitable for modelling than the filtered list.
1hjz.2.A, 1njr.1.A, 1qmy.1.A, 1qol.3.A, 1qol.3.B, 1spv.1.A, 1txz.1.A, 1vhu.1.A, 1yd9.1.A, 1yd9.3.A, 1yd9.4.A, 1zr3.1.A, 1zr3.2.A, 1zr5.1.A, 2afc.1.A, 2dx6.1.A, 2eee.1.A, 2fav.1.A, 2fav.2.A, 2fav.3.A, 2fe8.1.A, 2fe8.2.A, 2fe8.3.A, 2fg1.1.A, 2fxk.2.A, 2gri.1.A, 2jqf.1.A, 2jqf.1.B, 2jqg.1.A, 2jzd.1.A, 2jzf.1.A, 2k87.1.A, 2kaf.1.A, 2kqv.1.A, 2l8r.1.A, 2lgr.1.A, 2m0a.1.A, 2vri.1.A, 2x47.1.A, 2xd7.1.A, 3ejf.1.A, 3ejg.1.A, 3eke.1.A, 3eti.1.A, 3ew5.1.A, 3ew5.2.A, 3ewo.1.A, 3ewo.1.B, 3ewr.1.A, 3gpo.1.A, 3gpq.4.A, 3gqe.1.A, 3gqe.2.A, 3gqo.3.A, 3gqo.4.A, 3iid.1.A, 3iif.1.A, 3iif.2.A, 3iif.3.A, 3j8h.1.A, 3jzt.1.A, 3mp2.1.A, 3q6z.1.A, 3q71.1.A, 3sih.1.A, 3sij.1.A, 3v2b.1.A, 3v45.1.A, 3vfq.1.A, 4abk.1.A, 4ess.1.A, 4etj.1.A, 4etk.1.A, 4etk.2.A, 4gua.1.A, 4gvv.1.A, 4gvv.2.A, 4gvv.3.A, 4gvw.1.A, 4iqy.1.A, 4j4z.1.A, 4j5q.1.A, 4j5r.1.A, 4j5s.1.A, 4jca.2.A, 4jgk.1.A, 4jgk.3.A, 4jll.1.A, 4jvv.1.A, 4k0c.1.A, 4k0c.2.A, 4kyb.1.A, 4kyb.2.A, 4mm3.1.B, 4ovz.1.A, 4ovz.2.A, 4ow0.1.A, 4p16.1.A, 4pt5.1.A, 4r3d.1.A, 4rez.1.A, 4rf0.1.A, 4rna.1.A, 4tu0.3.A, 4uml.1.A, 4wur.1.A, 4x2z.1.A, 4ypt.1.A, 5ail.1.A, 5bz0.1.A, 5cb3.1.A, 5cb5.1.A, 5cms.1.A, 5dus.1.A, 5e3b.1.A, 5fsu.1.A, 5fsu.2.A, 5fsz.1.A, 5fud.1.A, 5gky.1.E, 5gkz.1.G, 5gl0.1.A, 5gl1.1.A, 5hih.1.A, 5iit.1.A, 5iq5.1.A, 5isn.1.A, 5j8v.1.D, 5kiv.1.A, 5ko3.1.A, 5l9k.1.A, 5lau.1.A, 5lbp.1.A, 5lcc.1.A, 5lcc.2.A, 5lnc.1.A, 5lnc.2.A, 5lw0.1.A, 5lw6.1.A, 5m31.1.A, 5m3e.1.A, 5m3i.1.A, 5mqx.1.A, 5o2d.1.A, 5rs7.1.A, 5rs7.2.A, 5rs8.1.A, 5rs8.2.A, 5rs9.1.A, 5rs9.2.A, 5rsb.1.A, 5rsb.2.A, 5rsc.1.A, 5rsc.2.A, 5rsd.1.A, 5rsd.2.A, 5rse.1.A, 5rse.2.A, 5rsf.1.A, 5rsf.2.A, 5rsg.1.A, 5rsg.2.A, 5rsh.1.A, 5rsh.2.A, 5rsi.1.A, 5rsi.2.A, 5rsj.1.A, 5rsj.2.A, 5rsk.1.A, 5rsk.2.A, 5rsl.1.A, 5rsl.2.A, 5rsm.1.A, 5rsm.2.A, 5rsn.1.A, 5rsn.2.A, 5rso.1.A, 5rso.2.A, 5rsp.1.A, 5rsp.2.A, 5rsq.1.A, 5rsq.2.A, 5rsr.1.A, 5rsr.2.A, 5rss.1.A, 5rss.2.A, 5rst.1.A, 5rst.2.A, 5rsu.1.A, 5rsu.2.A, 5rsv.1.A, 5rsv.2.A, 5rsw.1.A, 5rsw.2.A, 5rsx.1.A, 5rsx.2.A, 5rsy.1.A, 5rsy.2.A, 5rsz.1.A, 5rsz.2.A, 5rt0.1.A, 5rt0.2.A, 5rt1.1.A, 5rt1.2.A, 5rt2.1.A, 5rt2.2.A, 5rt3.1.A, 5rt3.2.A, 5rt4.1.A, 5rt4.2.A, 5rt5.1.A, 5rt5.2.A, 5rt6.1.A, 5rt6.2.A, 5rt7.1.A, 5rt7.2.A, 5rt8.1.A, 5rt8.2.A, 5rt9.1.A, 5rt9.2.A, 5rta.1.A, 5rta.2.A, 5rtb.1.A, 5rtb.2.A, 5rtc.1.A, 5rtc.2.A, 5rtd.1.A, 5rtd.2.A, 5rte.1.A, 5rte.2.A, 5rtf.1.A, 5rtf.2.A, 5rtg.1.A, 5rtg.2.A, 5rth.1.A, 5rth.2.A, 5rti.1.A, 5rti.2.A, 5rtj.1.A, 5rtj.2.A, 5rtk.1.A, 5rtk.2.A, 5rtl.1.A, 5rtl.2.A, 5rtm.1.A, 5rtm.2.A, 5rtn.1.A, 5rtn.2.A, 5rto.1.A, 5rto.2.A, 5rtp.1.A, 5rtp.2.A, 5rtq.1.A, 5rtq.2.A, 5rtr.1.A, 5rtr.2.A, 5rts.1.A, 5rts.2.A, 5rtt.1.A, 5rtt.2.A, 5rtu.1.A, 5rtu.2.A, 5rtv.1.A, 5rtv.2.A, 5rtw.1.A, 5rtw.2.A, 5rtx.1.A, 5rtx.2.A, 5rty.1.A, 5rty.2.A, 5rtz.1.A, 5rtz.2.A, 5ru0.1.A, 5ru0.2.A, 5ru1.1.A, 5ru1.2.A, 5ru2.1.A, 5ru2.2.A, 5ru3.1.A, 5ru3.2.A, 5ru4.1.A, 5ru4.2.A, 5ru5.1.A, 5ru5.2.A, 5ru6.1.A, 5ru6.2.A, 5ru7.1.A, 5ru7.2.A, 5ru8.1.A, 5ru8.2.A, 5ru9.1.A, 5ru9.2.A, 5rua.1.A, 5rua.2.A, 5ruc.1.A, 5ruc.2.A, 5rud.1.A, 5rud.2.A, 5rue.1.A, 5rue.2.A, 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