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SWISS-MODEL Homology Modelling Report |
Model Building Report
This document lists the results for the homology modelling project "Papain-like protease nsp3 | P0DTD1 PRO_0000449621" submitted to SWISS-MODEL workspace on May 5, 2023, 9:33 p.m..The submitted primary amino acid sequence is given in Table T1.
If you use any results in your research, please cite the relevant publications:
- Waterhouse, A., Bertoni, M., Bienert, S., Studer, G., Tauriello, G., Gumienny, R.,
Heer, F.T., de Beer, T.A.P., Rempfer, C., Bordoli, L., Lepore, R., Schwede, T.
SWISS-MODEL: homology modelling of protein structures and complexes.
Nucleic Acids Res. 46(W1), W296-W303 (2018).
- Bienert, S., Waterhouse, A., de Beer, T.A.P., Tauriello, G., Studer,
G., Bordoli, L., Schwede, T. The SWISS-MODEL Repository - new features and
functionality. Nucleic Acids Res. 45, D313-D319 (2017).
- Studer, G., Tauriello, G., Bienert, S.,
Biasini, M., Johner, N., Schwede, T. ProMod3 - A versatile homology
modelling toolbox. PLOS Comp. Biol. 17(1), e1008667 (2021).
- Studer, G., Rempfer, C., Waterhouse, A.M.,
Gumienny, G., Haas, J., Schwede, T. QMEANDisCo - distance constraints
applied on model quality estimation. Bioinformatics 36, 1765-1771 (2020).
- Bertoni, M., Kiefer, F., Biasini, M., Bordoli, L.,
Schwede, T. Modeling protein quaternary structure of homo- and
hetero-oligomers beyond binary interactions by homology. Scientific
Reports 7 (2017).
Results
The SWISS-MODEL template library (SMTL version 2023-05-05, PDB release 2023-04-28) was searched with for evolutionary related structures matching the target sequence in Table T1. For details on the template search, see Materials and Methods. Overall 1456 templates were found (Table T2).
Models
The following models were built (see Materials and Methods "Model Building"):
Model #02 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer (matching prediction) |
1 x ZN: ZINC ION;
|
0.14 | 0.80 ± 0.05 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
6w9c.1.A | 100.00 | homo-trimer | 0.26 | HHblits | X-ray | 2.70Å | 0.63 | 748 - 1060 | 0.16 | Non-structural protein 3 |
Included Ligands
Ligand | Description |
---|---|
1 x ZN | ZINC ION |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
CL.2 | Not biologically relevant. | CHLORIDE ION |
CL.4 | Not biologically relevant. | CHLORIDE ION |
CL.7 | Not biologically relevant. | CHLORIDE ION |
ZN.3 | Binding site not conserved. | ZINC ION |
ZN.5 | Binding site not conserved. | ZINC ION |
ZN.6 | Binding site not conserved. | ZINC ION |
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
6w9c.1.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
6w9c.1.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
6w9c.1.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
6w9c.1.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
6w9c.1.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
6w9c.1.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
6w9c.1.A --------------------------------------------------------------------------------
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
6w9c.1.A --------------------------------------------------------------------------------
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
6w9c.1.A --------------------------------------------------------------------------------
Target SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
6w9c.1.A -------------------------EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
Target YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
6w9c.1.A YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
Target YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
6w9c.1.A YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
Target FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
6w9c.1.A FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
Target YKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFA
6w9c.1.A YKGPITDVFYKENSYTTTIK------------------------------------------------------------
Target DDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
6w9c.1.A --------------------------------------------------------------------------------
Target VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA
6w9c.1.A --------------------------------------------------------------------------------
Target YVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ
6w9c.1.A --------------------------------------------------------------------------------
Target LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG
6w9c.1.A --------------------------------------------------------------------------------
Target MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFF
6w9c.1.A --------------------------------------------------------------------------------
Target YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
6w9c.1.A --------------------------------------------------------------------------------
Target TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN
6w9c.1.A --------------------------------------------------------------------------------
Target GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS
6w9c.1.A --------------------------------------------------------------------------------
Target DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLS
6w9c.1.A --------------------------------------------------------------------------------
Target HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL
6w9c.1.A --------------------------------------------------------------------------------
Target PFKLTCATTRQVVNVVTTKIALKGG
6w9c.1.A -------------------------
Model #07 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer |
1 x ACE-UB4-DPP-GLY-GVE: VIR250;
1 x ZN: ZINC ION; |
0.14 | 0.79 ± 0.05 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
6wuu.2.A | 99.69 | monomer | 0.00 | BLAST | X-ray | 2.79Å | 0.62 | 744 - 1061 | 0.16 | Non-structural protein 3 |
Included Ligands
Ligand | Description |
---|---|
1 x ACE-UB4-DPP-GLY-GVE | VIR250 |
1 x ZN | ZINC ION |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
MG.3 | Not in contact with model. | MAGNESIUM ION |
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
6wuu.2.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
6wuu.2.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
6wuu.2.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
6wuu.2.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
6wuu.2.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
6wuu.2.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
6wuu.2.A --------------------------------------------------------------------------------
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
6wuu.2.A --------------------------------------------------------------------------------
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
6wuu.2.A --------------------------------------------------------------------------------
Target SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
6wuu.2.A -----------------------MREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
Target YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
6wuu.2.A YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
Target YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
6wuu.2.A YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
Target FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
6wuu.2.A FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
Target YKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFA
6wuu.2.A YKGPITDVFYKENSYTTTIKP-----------------------------------------------------------
Target DDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
6wuu.2.A --------------------------------------------------------------------------------
Target VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA
6wuu.2.A --------------------------------------------------------------------------------
Target YVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ
6wuu.2.A --------------------------------------------------------------------------------
Target LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG
6wuu.2.A --------------------------------------------------------------------------------
Target MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFF
6wuu.2.A --------------------------------------------------------------------------------
Target YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
6wuu.2.A --------------------------------------------------------------------------------
Target TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN
6wuu.2.A --------------------------------------------------------------------------------
Target GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS
6wuu.2.A --------------------------------------------------------------------------------
Target DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLS
6wuu.2.A --------------------------------------------------------------------------------
Target HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL
6wuu.2.A --------------------------------------------------------------------------------
Target PFKLTCATTRQVVNVVTTKIALKGG
6wuu.2.A -------------------------
Model #10 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer |
1 x TTT: 5-AMINO-2-METHYL-N-[(1R)-1-NAPHTHALEN-1-YLETHYL]BENZAMIDE;
1 x ZN: ZINC ION; |
0.14 | 0.79 ± 0.05 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
3e9s.1.A | 82.86 | monomer | 0.00 | HHblits | X-ray | 2.50Å | 0.57 | 746 - 1059 | 0.16 | Non-structural protein 3 |
Included Ligands
Ligand | Description |
---|---|
1 x TTT | 5-AMINO-2-METHYL-N-[(1R)-1-NAPHTHALEN-1-YLETHYL]BENZAMIDE |
1 x ZN | ZINC ION |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
CL.3 | Not biologically relevant. | CHLORIDE ION |
CL.4 | Not biologically relevant. | CHLORIDE ION |
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
3e9s.1.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
3e9s.1.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
3e9s.1.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
3e9s.1.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
3e9s.1.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
3e9s.1.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
3e9s.1.A --------------------------------------------------------------------------------
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
3e9s.1.A --------------------------------------------------------------------------------
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
3e9s.1.A --------------------------------------------------------------------------------
Target SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
3e9s.1.A -------------------------EVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTF
Target YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
3e9s.1.A FVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEA
Target YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
3e9s.1.A YYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDN
Target FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
3e9s.1.A LKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSE
Target YKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFA
3e9s.1.A YKGPVTDVFYKETSYTTTIK------------------------------------------------------------
Target DDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
3e9s.1.A --------------------------------------------------------------------------------
Target VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA
3e9s.1.A --------------------------------------------------------------------------------
Target YVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ
3e9s.1.A --------------------------------------------------------------------------------
Target LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG
3e9s.1.A --------------------------------------------------------------------------------
Target MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFF
3e9s.1.A --------------------------------------------------------------------------------
Target YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
3e9s.1.A --------------------------------------------------------------------------------
Target TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN
3e9s.1.A --------------------------------------------------------------------------------
Target GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS
3e9s.1.A --------------------------------------------------------------------------------
Target DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLS
3e9s.1.A --------------------------------------------------------------------------------
Target HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL
3e9s.1.A --------------------------------------------------------------------------------
Target PFKLTCATTRQVVNVVTTKIALKGG
3e9s.1.A -------------------------
Model #01 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer |
1 x TTT: 5-AMINO-2-METHYL-N-[(1R)-1-NAPHTHALEN-1-YLETHYL]BENZAMIDE;
1 x ZN: ZINC ION; |
0.14 | 0.79 ± 0.05 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
3e9s.1.A | 82.86 | monomer | 0.00 | BLAST | X-ray | 2.50Å | 0.57 | 746 - 1059 | 0.16 | Non-structural protein 3 |
Included Ligands
Ligand | Description |
---|---|
1 x TTT | 5-AMINO-2-METHYL-N-[(1R)-1-NAPHTHALEN-1-YLETHYL]BENZAMIDE |
1 x ZN | ZINC ION |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
CL.3 | Not biologically relevant. | CHLORIDE ION |
CL.4 | Not biologically relevant. | CHLORIDE ION |
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
3e9s.1.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
3e9s.1.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
3e9s.1.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
3e9s.1.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
3e9s.1.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
3e9s.1.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
3e9s.1.A --------------------------------------------------------------------------------
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
3e9s.1.A --------------------------------------------------------------------------------
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
3e9s.1.A --------------------------------------------------------------------------------
Target SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
3e9s.1.A -------------------------EVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTF
Target YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
3e9s.1.A FVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEA
Target YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
3e9s.1.A YYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDN
Target FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
3e9s.1.A LKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSE
Target YKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFA
3e9s.1.A YKGPVTDVFYKETSYTTTIK------------------------------------------------------------
Target DDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
3e9s.1.A --------------------------------------------------------------------------------
Target VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA
3e9s.1.A --------------------------------------------------------------------------------
Target YVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ
3e9s.1.A --------------------------------------------------------------------------------
Target LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG
3e9s.1.A --------------------------------------------------------------------------------
Target MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFF
3e9s.1.A --------------------------------------------------------------------------------
Target YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
3e9s.1.A --------------------------------------------------------------------------------
Target TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN
3e9s.1.A --------------------------------------------------------------------------------
Target GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS
3e9s.1.A --------------------------------------------------------------------------------
Target DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLS
3e9s.1.A --------------------------------------------------------------------------------
Target HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL
3e9s.1.A --------------------------------------------------------------------------------
Target PFKLTCATTRQVVNVVTTKIALKGG
3e9s.1.A -------------------------
Model #09 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer |
1 x TTT: 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide;
1 x ZN: ZINC ION; |
0.14 | 0.79 ± 0.05 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
7cmd.4.A | 100.00 | monomer | 0.00 | HHblits | X-ray | 2.59Å | 0.63 | 746 - 1060 | 0.16 | Non-structural protein 3 |
Included Ligands
Ligand | Description |
---|---|
1 x TTT | 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide |
1 x ZN | ZINC ION |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
ZN.3 | Not in contact with model. | ZINC ION |
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
7cmd.4.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
7cmd.4.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
7cmd.4.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
7cmd.4.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
7cmd.4.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
7cmd.4.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
7cmd.4.A --------------------------------------------------------------------------------
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
7cmd.4.A --------------------------------------------------------------------------------
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
7cmd.4.A --------------------------------------------------------------------------------
Target SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
7cmd.4.A -------------------------EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
Target YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
7cmd.4.A YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
Target YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
7cmd.4.A YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
Target FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
7cmd.4.A FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
Target YKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFA
7cmd.4.A YKGPITDVFYKENSYTTTIKPVT---------------------------------------------------------
Target DDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
7cmd.4.A --------------------------------------------------------------------------------
Target VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA
7cmd.4.A --------------------------------------------------------------------------------
Target YVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ
7cmd.4.A --------------------------------------------------------------------------------
Target LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG
7cmd.4.A --------------------------------------------------------------------------------
Target MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFF
7cmd.4.A --------------------------------------------------------------------------------
Target YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
7cmd.4.A --------------------------------------------------------------------------------
Target TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN
7cmd.4.A --------------------------------------------------------------------------------
Target GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS
7cmd.4.A --------------------------------------------------------------------------------
Target DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLS
7cmd.4.A --------------------------------------------------------------------------------
Target HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL
7cmd.4.A --------------------------------------------------------------------------------
Target PFKLTCATTRQVVNVVTTKIALKGG
7cmd.4.A -------------------------
Model #08 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer (matching prediction) |
None
|
0.13 | 0.79 ± 0.05 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
2w2g.1.A | 75.00 | homo-dimer | 0.21 | BLAST | X-ray | 2.22Å | 0.53 | 413 - 676 | 0.14 | NON-STRUCTURAL PROTEIN 3 |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
SO4.1 | Not biologically relevant. | SULFATE ION |
SO4.2 | Not biologically relevant. | SULFATE ION |
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
2w2g.1.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
2w2g.1.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
2w2g.1.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
2w2g.1.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
2w2g.1.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
2w2g.1.A ------------KIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITC
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
2w2g.1.A VVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREM
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
2w2g.1.A LAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFN
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
2w2g.1.A LEEAARCMRSLRAPAVVSVSSPDAVTTYNGYLTSSS--------------------------------------------
Target SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
2w2g.1.A --------------------------------------------------------------------------------
Target YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
2w2g.1.A --------------------------------------------------------------------------------
Target YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
2w2g.1.A --------------------------------------------------------------------------------
Target FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
2w2g.1.A --------------------------------------------------------------------------------
Target YKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFA
2w2g.1.A --------------------------------------------------------------------------------
Target DDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
2w2g.1.A --------------------------------------------------------------------------------
Target VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA
2w2g.1.A --------------------------------------------------------------------------------
Target YVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ
2w2g.1.A --------------------------------------------------------------------------------
Target LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG
2w2g.1.A --------------------------------------------------------------------------------
Target MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFF
2w2g.1.A --------------------------------------------------------------------------------
Target YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
2w2g.1.A --------------------------------------------------------------------------------
Target TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN
2w2g.1.A --------------------------------------------------------------------------------
Target GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS
2w2g.1.A --------------------------------------------------------------------------------
Target DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLS
2w2g.1.A --------------------------------------------------------------------------------
Target HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL
2w2g.1.A --------------------------------------------------------------------------------
Target PFKLTCATTRQVVNVVTTKIALKGG
2w2g.1.A -------------------------
Model #05 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer |
None
|
0.09 | 0.84 ± 0.07 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
6ywk.3.A | 100.00 | monomer | 0.00 | BLAST | X-ray | 2.20Å | 0.61 | 207 - 376 | 0.09 | NSP3 macrodomain |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
EDO.3 | Not biologically relevant. | 1,2-ETHANEDIOL |
EDO.4 | Not biologically relevant. | 1,2-ETHANEDIOL |
EDO.5 | Not biologically relevant. | 1,2-ETHANEDIOL |
EDO.6 | Not biologically relevant. | 1,2-ETHANEDIOL |
EDO.7 | Not biologically relevant. | 1,2-ETHANEDIOL |
EDO.8 | Not biologically relevant. | 1,2-ETHANEDIOL |
EPE.2 | Not biologically relevant. | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID |
MG.1 | Binding site not conserved. | MAGNESIUM ION |
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
6ywk.3.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
6ywk.3.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
6ywk.3.A ----------------------------------------------VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
6ywk.3.A NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
6ywk.3.A NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMK------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
6ywk.3.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
6ywk.3.A --------------------------------------------------------------------------------
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
6ywk.3.A --------------------------------------------------------------------------------
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
6ywk.3.A --------------------------------------------------------------------------------
Target SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
6ywk.3.A --------------------------------------------------------------------------------
Target YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
6ywk.3.A --------------------------------------------------------------------------------
Target YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
6ywk.3.A --------------------------------------------------------------------------------
Target FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
6ywk.3.A --------------------------------------------------------------------------------
Target YKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFA
6ywk.3.A --------------------------------------------------------------------------------
Target DDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
6ywk.3.A --------------------------------------------------------------------------------
Target VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA
6ywk.3.A --------------------------------------------------------------------------------
Target YVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ
6ywk.3.A --------------------------------------------------------------------------------
Target LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG
6ywk.3.A --------------------------------------------------------------------------------
Target MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFF
6ywk.3.A --------------------------------------------------------------------------------
Target YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
6ywk.3.A --------------------------------------------------------------------------------
Target TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN
6ywk.3.A --------------------------------------------------------------------------------
Target GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS
6ywk.3.A --------------------------------------------------------------------------------
Target DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLS
6ywk.3.A --------------------------------------------------------------------------------
Target HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL
6ywk.3.A --------------------------------------------------------------------------------
Target PFKLTCATTRQVVNVVTTKIALKGG
6ywk.3.A -------------------------
Model #06 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer |
None
|
0.07 | 0.75 ± 0.07 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
2kqv.1.A | 78.13 | monomer | 0.00 | HHblits | NMR | - | 0.55 | 551 - 675 | 0.10 | Non-structural protein 3 |
The template contained no ligands.
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
2kqv.1.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
2kqv.1.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
2kqv.1.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
2kqv.1.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
2kqv.1.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
2kqv.1.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
2kqv.1.A ----------------------------------------------------------------------GTVSWNLREM
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
2kqv.1.A LAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFN
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
2kqv.1.A LEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHT
Target SNP-TTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKT
2kqv.1.A LESPVEFHLDGEVLSLDKLKSLL---------------------------------------------------------
Target FYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQD
2kqv.1.A --------------------------------------------------------------------------------
Target AYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE
2kqv.1.A --------------------------------------------------------------------------------
Target QFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSS
2kqv.1.A --------------------------------------------------------------------------------
Target EYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKF
2kqv.1.A --------------------------------------------------------------------------------
Target ADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTK
2kqv.1.A --------------------------------------------------------------------------------
Target PVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA
2kqv.1.A --------------------------------------------------------------------------------
Target AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLL
2kqv.1.A --------------------------------------------------------------------------------
Target QLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNL
2kqv.1.A --------------------------------------------------------------------------------
Target GMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF
2kqv.1.A --------------------------------------------------------------------------------
Target FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNR
2kqv.1.A --------------------------------------------------------------------------------
Target ATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVK
2kqv.1.A --------------------------------------------------------------------------------
Target NGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV
2kqv.1.A --------------------------------------------------------------------------------
Target SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKL
2kqv.1.A --------------------------------------------------------------------------------
Target SHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNN
2kqv.1.A --------------------------------------------------------------------------------
Target LPFKLTCATTRQVVNVVTTKIALKGG
2kqv.1.A --------------------------
Model #04 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer |
None
|
0.05 | 0.69 ± 0.08 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
2k87.1.A | 81.74 | monomer | 0.00 | BLAST | NMR | - | 0.58 | 1089 - 1203 | 0.06 | Non-structural protein 3 of Replicase polyprotein 1a |
The template contained no ligands.
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
2k87.1.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
2k87.1.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
2k87.1.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
2k87.1.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
2k87.1.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
2k87.1.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
2k87.1.A --------------------------------------------------------------------------------
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
2k87.1.A --------------------------------------------------------------------------------
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
2k87.1.A --------------------------------------------------------------------------------
Target SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
2k87.1.A --------------------------------------------------------------------------------
Target YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA
2k87.1.A --------------------------------------------------------------------------------
Target YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ
2k87.1.A --------------------------------------------------------------------------------
Target FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSE
2k87.1.A --------------------------------------------------------------------------------
Target YKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFA
2k87.1.A ------------------------------------------------YTEQPIDLVPTQPLPNASFDNFKLTCSNTKFA
Target DDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
2k87.1.A DDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP
Target VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA
2k87.1.A VDT-----------------------------------------------------------------------------
Target YVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ
2k87.1.A --------------------------------------------------------------------------------
Target LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG
2k87.1.A --------------------------------------------------------------------------------
Target MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFF
2k87.1.A --------------------------------------------------------------------------------
Target YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
2k87.1.A --------------------------------------------------------------------------------
Target TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN
2k87.1.A --------------------------------------------------------------------------------
Target GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS
2k87.1.A --------------------------------------------------------------------------------
Target DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLS
2k87.1.A --------------------------------------------------------------------------------
Target HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL
2k87.1.A --------------------------------------------------------------------------------
Target PFKLTCATTRQVVNVVTTKIALKGG
2k87.1.A -------------------------
Model #03 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | monomer |
None
|
0.05 | 0.71 ± 0.11 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
2kqw.1.A | 80.22 | monomer | 0.00 | BLAST | NMR | - | 0.55 | 678 - 732 | 0.09 | Non-structural protein 3 |
The template contained no ligands.
Target APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD
2kqw.1.A --------------------------------------------------------------------------------
Target EWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED
2kqw.1.A --------------------------------------------------------------------------------
Target WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV
2kqw.1.A --------------------------------------------------------------------------------
Target NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF
2kqw.1.A --------------------------------------------------------------------------------
Target NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
2kqw.1.A --------------------------------------------------------------------------------
Target KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA
2kqw.1.A --------------------------------------------------------------------------------
Target VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM
2kqw.1.A ----------------------------------------------------------------------GTVSWNLREM
Target LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLN
2kqw.1.A LAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFN
Target LEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT
2kqw.1.A LEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHT
Target -SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKT
2kqw.1.A LESPVEFHLDGEV-------------------------------------------------------------------
Target FYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQD
2kqw.1.A --------------------------------------------------------------------------------
Target AYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE
2kqw.1.A --------------------------------------------------------------------------------
Target QFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSS
2kqw.1.A --------------------------------------------------------------------------------
Target EYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKF
2kqw.1.A --------------------------------------------------------------------------------
Target ADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTK
2kqw.1.A --------------------------------------------------------------------------------
Target PVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA
2kqw.1.A --------------------------------------------------------------------------------
Target AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLL
2kqw.1.A --------------------------------------------------------------------------------
Target QLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNL
2kqw.1.A --------------------------------------------------------------------------------
Target GMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF
2kqw.1.A --------------------------------------------------------------------------------
Target FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNR
2kqw.1.A --------------------------------------------------------------------------------
Target ATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVK
2kqw.1.A --------------------------------------------------------------------------------
Target NGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV
2kqw.1.A --------------------------------------------------------------------------------
Target SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKL
2kqw.1.A --------------------------------------------------------------------------------
Target SHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNN
2kqw.1.A --------------------------------------------------------------------------------
Target LPFKLTCATTRQVVNVVTTKIALKGG
2kqw.1.A --------------------------
Materials and Methods
Template Search
Template search with has been performed against the SWISS-MODEL template library (SMTL, last update: 2023-05-05, last included PDB release: 2023-04-28).
Model Building
Models are built based on the target-template alignment using ProMod3 (Studer et al.). Coordinates which are conserved between the target and the template are copied from the template to the model. Insertions and deletions are remodelled using a fragment library. Side chains are then rebuilt. Finally, the geometry of the resulting model is regularized by using a force field.
Model Quality Estimation
The global and per-residue model quality has been assessed using the QMEAN scoring function (Studer et al.).
Ligand Modelling
Ligands present in the template structure are transferred by homology to the model when the following criteria are met: (a) The ligands are annotated as biologically relevant in the template library, (b) the ligand is in contact with the model, (c) the ligand is not clashing with the protein, (d) the residues in contact with the ligand are conserved between the target and the template. If any of these four criteria is not satisfied, a certain ligand will not be included in the model. The model summary includes information on why and which ligand has not been included.
Oligomeric State Conservation
The quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. The method (Bertoni et al.) is based on a supervised machine learning algorithm, Support Vector Machines (SVM), which combines interface conservation, structural clustering, and other template features to provide a quaternary structure quality estimate (QSQE). The QSQE score is a number between 0 and 1, reflecting the expected accuracy of the interchain contacts for a model built based a given alignment and template. Higher numbers indicate higher reliability. This complements the GMQE score which estimates the accuracy of the tertiary structure of the resulting model.
References
- BLAST
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., Madden, T.L. BLAST+: architecture and applications. BMC Bioinformatics 10, 421-430 (2009). - HHblits
Steinegger, M., Meier, M., Mirdita, M., Vöhringer, H., Haunsberger, S. J., Söding, J. HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinformatics 20, 473 (2019).
Table T1:
Primary amino acid sequence for which templates were searched and models were built.
HMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP
VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV
GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALR
KVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY
GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSG
QSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTF
YVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC
NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKH
GTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQ
PYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP
VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLG
LKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYL
KSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL
TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRA
TRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL
SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA
ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDF
MSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG
Table T2:
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|
6wuu.4.A | 99.69 | monomer | - | BLAST | X-ray | 2.79Å | 0.62 | 0.16 | Non-structural protein 3 |
6wuu.1.A | 99.69 | monomer | - | BLAST | X-ray | 2.79Å | 0.62 | 0.16 | Non-structural protein 3 |
6wuu.2.A | 99.69 | monomer | - | BLAST | X-ray | 2.79Å | 0.62 | 0.16 | Non-structural protein 3 |
7cmd.2.A | 100.00 | monomer | - | HHblits | X-ray | 2.59Å | 0.63 | 0.16 | Non-structural protein 3 |
6w9c.1.A | 100.00 | homo-trimer | 0.26 | HHblits | X-ray | 2.70Å | 0.63 | 0.16 | Non-structural protein 3 |
8eua.1.A | 99.69 | monomer | - | BLAST | X-ray | 3.10Å | 0.62 | 0.16 | Papain-like protease nsp3 |
7cmd.4.A | 100.00 | monomer | - | HHblits | X-ray | 2.59Å | 0.63 | 0.16 | Non-structural protein 3 |
7cmd.1.A | 100.00 | monomer | - | HHblits | X-ray | 2.59Å | 0.63 | 0.16 | Non-structural protein 3 |
7cmd.3.A | 100.00 | monomer | - | HHblits | X-ray | 2.59Å | 0.63 | 0.16 | Non-structural protein 3 |
5e6j.1.A | 82.91 | monomer | - | HHblits | X-ray | 2.85Å | 0.57 | 0.16 | Replicase polyprotein 1ab |
7lfu.1.A | 82.91 | monomer | - | HHblits | X-ray | 2.29Å | 0.57 | 0.16 | papain-like protease |
3e9s.1.A | 82.86 | monomer | - | HHblits | X-ray | 2.50Å | 0.57 | 0.16 | Non-structural protein 3 |
3e9s.1.A | 82.86 | monomer | - | BLAST | X-ray | 2.50Å | 0.57 | 0.16 | Non-structural protein 3 |
7lfv.2.A | 82.91 | monomer | - | HHblits | X-ray | 2.23Å | 0.57 | 0.16 | papain-like protease |
5e6j.2.A | 82.91 | monomer | - | HHblits | X-ray | 2.85Å | 0.57 | 0.16 | Replicase polyprotein 1ab |
7lfv.1.A | 82.91 | monomer | - | HHblits | X-ray | 2.23Å | 0.57 | 0.16 | papain-like protease |
3mj5.1.A | 82.86 | monomer | - | HHblits | X-ray | 2.63Å | 0.57 | 0.16 | Replicase polyprotein 1a |
8f2e.1.A | 100.00 | monomer | - | HHblits | X-ray | 2.43Å | 0.61 | 0.15 | Papain-like protease nsp3 |
4m0w.1.A | 82.39 | monomer | - | HHblits | X-ray | 1.40Å | 0.56 | 0.16 | Replicase polyprotein 1a |
2w2g.1.A | 75.00 | homo-dimer | 0.21 | BLAST | X-ray | 2.22Å | 0.53 | 0.14 | NON-STRUCTURAL PROTEIN 3 |
2wct.1.A | 75.00 | homo-dimer | 0.19 | BLAST | X-ray | 2.79Å | 0.53 | 0.14 | NON-STRUCTURAL PROTEIN 3 |
2w2g.1.A | 74.90 | homo-dimer | 0.21 | HHblits | X-ray | 2.22Å | 0.53 | 0.14 | NON-STRUCTURAL PROTEIN 3 |
2wct.1.A | 74.90 | homo-dimer | 0.19 | HHblits | X-ray | 2.79Å | 0.53 | 0.14 | NON-STRUCTURAL PROTEIN 3 |
2w2g.1.B | 75.00 | homo-dimer | 0.21 | BLAST | X-ray | 2.22Å | 0.53 | 0.14 | NON-STRUCTURAL PROTEIN 3 |
2w2g.1.B | 74.90 | homo-dimer | 0.20 | HHblits | X-ray | 2.22Å | 0.53 | 0.14 | NON-STRUCTURAL PROTEIN 3 |
6ywk.4.A | 100.00 | monomer | - | BLAST | X-ray | 2.20Å | 0.61 | 0.09 | NSP3 macrodomain |
6z5t.1.A | 100.00 | monomer | - | BLAST | X-ray | 1.57Å | 0.61 | 0.09 | Replicase polyprotein 1ab |
6ywk.3.A | 100.00 | monomer | - | BLAST | X-ray | 2.20Å | 0.61 | 0.09 | NSP3 macrodomain |
2acf.4.A | 72.94 | monomer | - | HHblits | X-ray | 1.40Å | 0.52 | 0.09 | Replicase polyprotein 1ab |
2acf.4.A | 73.37 | monomer | - | BLAST | X-ray | 1.40Å | 0.52 | 0.09 | Replicase polyprotein 1ab |
6ywk.1.A | 100.00 | monomer | - | BLAST | X-ray | 2.20Å | 0.61 | 0.09 | NSP3 macrodomain |
7jme.1.A | 100.00 | monomer | - | BLAST | X-ray | 1.55Å | 0.61 | 0.09 | Non-structural protein 3 |
7c33.1.A | 100.00 | monomer | - | BLAST | X-ray | 3.83Å | 0.61 | 0.09 | Non-structural protein 3 |
2acf.2.A | 72.94 | monomer | - | HHblits | X-ray | 1.40Å | 0.52 | 0.09 | Replicase polyprotein 1ab |
6wey.1.A | 100.00 | monomer | - | BLAST | X-ray | 0.95Å | 0.61 | 0.09 | Non-structural protein 3 |
2acf.2.A | 73.37 | monomer | - | BLAST | X-ray | 1.40Å | 0.52 | 0.09 | Replicase polyprotein 1ab |
6woj.1.A | 100.00 | monomer | - | BLAST | X-ray | 2.20Å | 0.61 | 0.09 | Non-structural protein 3 |
2fav.2.A | 73.81 | monomer | - | BLAST | X-ray | 1.80Å | 0.53 | 0.09 | Replicase polyprotein 1ab (pp1ab) (ORF1AB) |
2fav.1.A | 73.81 | monomer | - | BLAST | X-ray | 1.80Å | 0.53 | 0.09 | Replicase polyprotein 1ab (pp1ab) (ORF1AB) |
2acf.1.A | 73.37 | monomer | - | BLAST | X-ray | 1.40Å | 0.52 | 0.09 | Replicase polyprotein 1ab |
2acf.1.A | 72.94 | monomer | - | HHblits | X-ray | 1.40Å | 0.52 | 0.09 | Replicase polyprotein 1ab |
7xc4.1.B | 100.00 | homo-dimer | 0.24 | HHblits | X-ray | 2.10Å | 0.60 | 0.06 | Papain-like protease nsp3 |
7xc3.1.B | 100.00 | homo-dimer | 0.25 | HHblits | X-ray | 1.70Å | 0.61 | 0.06 | Papain-like protease nsp3 |
7xc4.1.A | 100.00 | homo-dimer | 0.25 | BLAST | X-ray | 2.10Å | 0.60 | 0.06 | Papain-like protease nsp3 |
7xc4.1.A | 100.00 | homo-dimer | 0.24 | HHblits | X-ray | 2.10Å | 0.60 | 0.06 | Papain-like protease nsp3 |
7xc3.1.A | 100.00 | homo-dimer | 0.25 | HHblits | X-ray | 1.70Å | 0.61 | 0.06 | Papain-like protease nsp3 |
2kqv.1.A | 78.13 | monomer | - | HHblits | NMR | NA | 0.55 | 0.10 | Non-structural protein 3 |
7lgo.2.A | 100.00 | monomer | - | BLAST | X-ray | 2.45Å | 0.64 | 0.06 | Non-structural protein 3 |
7lgo.2.A | 100.00 | monomer | - | HHblits | X-ray | 2.45Å | 0.64 | 0.06 | Non-structural protein 3 |
7lgo.1.A | 100.00 | monomer | - | BLAST | X-ray | 2.45Å | 0.64 | 0.06 | Non-structural protein 3 |
7lgo.1.A | 100.00 | monomer | - | HHblits | X-ray | 2.45Å | 0.64 | 0.06 | Non-structural protein 3 |
2k87.1.A | 81.74 | monomer | - | BLAST | NMR | NA | 0.58 | 0.06 | Non-structural protein 3 of Replicase polyprotein 1a |
2kqw.1.A | 78.13 | monomer | - | HHblits | NMR | NA | 0.55 | 0.10 | Non-structural protein 3 |
2kqw.1.A | 80.22 | monomer | - | BLAST | NMR | NA | 0.55 | 0.09 | Non-structural protein 3 |
The table above shows the top 54 filtered templates. A further 1,299 templates were found which were considered to be less suitable for modelling than the filtered list.
1hjz.2.A, 1njr.1.A, 1qmy.1.A, 1qol.3.A, 1qol.3.B, 1spv.1.A, 1txz.1.A, 1vhu.1.A, 1yd9.1.A, 1yd9.3.A, 1yd9.4.A, 1zr3.1.A, 1zr3.2.A, 1zr5.1.A, 2afc.1.A, 2dx6.1.A, 2eee.1.A, 2fav.1.A, 2fav.2.A, 2fav.3.A, 2fe8.1.A, 2fe8.2.A, 2fe8.3.A, 2fg1.1.A, 2fxk.2.A, 2gri.1.A, 2jqf.1.A, 2jqf.1.B, 2jqg.1.A, 2jzd.1.A, 2jzf.1.A, 2k87.1.A, 2kaf.1.A, 2kqv.1.A, 2l8r.1.A, 2lgr.1.A, 2m0a.1.A, 2vri.1.A, 2x47.1.A, 2xd7.1.A, 3ejf.1.A, 3ejg.1.A, 3eke.1.A, 3eti.1.A, 3ew5.1.A, 3ew5.2.A, 3ewo.1.A, 3ewo.1.B, 3ewr.1.A, 3gpo.1.A, 3gpq.4.A, 3gqe.1.A, 3gqe.2.A, 3gqo.3.A, 3gqo.4.A, 3iid.1.A, 3iif.1.A, 3iif.2.A, 3iif.3.A, 3j8h.1.A, 3jzt.1.A, 3mp2.1.A, 3q6z.1.A, 3q71.1.A, 3sih.1.A, 3sij.1.A, 3v2b.1.A, 3v45.1.A, 3vfq.1.A, 4abk.1.A, 4ess.1.A, 4etj.1.A, 4etk.1.A, 4etk.2.A, 4gua.1.A, 4gvv.1.A, 4gvv.2.A, 4gvv.3.A, 4gvw.1.A, 4iqy.1.A, 4j4z.1.A, 4j5q.1.A, 4j5r.1.A, 4j5s.1.A, 4jca.2.A, 4jgk.1.A, 4jgk.3.A, 4jll.1.A, 4jvv.1.A, 4k0c.1.A, 4k0c.2.A, 4kyb.1.A, 4kyb.2.A, 4mm3.1.B, 4ovz.1.A, 4ovz.2.A, 4ow0.1.A, 4p16.1.A, 4pt5.1.A, 4r3d.1.A, 4rez.1.A, 4rf0.1.A, 4rna.1.A, 4tu0.3.A, 4uml.1.A, 4wur.1.A, 4x2z.1.A, 4ypt.1.A, 5ail.1.A, 5bz0.1.A, 5cb3.1.A, 5cb5.1.A, 5cms.1.A, 5dus.1.A, 5e3b.1.A, 5fsu.1.A, 5fsu.2.A, 5fsz.1.A, 5fud.1.A, 5gky.1.E, 5gkz.1.G, 5gl0.1.A, 5gl1.1.A, 5hih.1.A, 5iit.1.A, 5iq5.1.A, 5isn.1.A, 5j8v.1.D, 5kiv.1.A, 5ko3.1.A, 5l9k.1.A, 5lau.1.A, 5lbp.1.A, 5lcc.1.A, 5lcc.2.A, 5lnc.1.A, 5lnc.2.A, 5lw0.1.A, 5lw6.1.A, 5m31.1.A, 5m3e.1.A, 5m3i.1.A, 5mqx.1.A, 5o2d.1.A, 5rs7.1.A, 5rs7.2.A, 5rs8.1.A, 5rs8.2.A, 5rs9.1.A, 5rs9.2.A, 5rsb.1.A, 5rsb.2.A, 5rsc.1.A, 5rsc.2.A, 5rsd.1.A, 5rsd.2.A, 5rse.1.A, 5rse.2.A, 5rsf.1.A, 5rsf.2.A, 5rsg.1.A, 5rsg.2.A, 5rsh.1.A, 5rsh.2.A, 5rsi.1.A, 5rsi.2.A, 5rsj.1.A, 5rsj.2.A, 5rsk.1.A, 5rsk.2.A, 5rsl.1.A, 5rsl.2.A, 5rsm.1.A, 5rsm.2.A, 5rsn.1.A, 5rsn.2.A, 5rso.1.A, 5rso.2.A, 5rsp.1.A, 5rsp.2.A, 5rsq.1.A, 5rsq.2.A, 5rsr.1.A, 5rsr.2.A, 5rss.1.A, 5rss.2.A, 5rst.1.A, 5rst.2.A, 5rsu.1.A, 5rsu.2.A, 5rsv.1.A, 5rsv.2.A, 5rsw.1.A, 5rsw.2.A, 5rsx.1.A, 5rsx.2.A, 5rsy.1.A, 5rsy.2.A, 5rsz.1.A, 5rsz.2.A, 5rt0.1.A, 5rt0.2.A, 5rt1.1.A, 5rt1.2.A, 5rt2.1.A, 5rt2.2.A, 5rt3.1.A, 5rt3.2.A, 5rt4.1.A, 5rt4.2.A, 5rt5.1.A, 5rt5.2.A, 5rt6.1.A, 5rt6.2.A, 5rt7.1.A, 5rt7.2.A, 5rt8.1.A, 5rt8.2.A, 5rt9.1.A, 5rt9.2.A, 5rta.1.A, 5rta.2.A, 5rtb.1.A, 5rtb.2.A, 5rtc.1.A, 5rtc.2.A, 5rtd.1.A, 5rtd.2.A, 5rte.1.A, 5rte.2.A, 5rtf.1.A, 5rtf.2.A, 5rtg.1.A, 5rtg.2.A, 5rth.1.A, 5rth.2.A, 5rti.1.A, 5rti.2.A, 5rtj.1.A, 5rtj.2.A, 5rtk.1.A, 5rtk.2.A, 5rtl.1.A, 5rtl.2.A, 5rtm.1.A, 5rtm.2.A, 5rtn.1.A, 5rtn.2.A, 5rto.1.A, 5rto.2.A, 5rtp.1.A, 5rtp.2.A, 5rtq.1.A, 5rtq.2.A, 5rtr.1.A, 5rtr.2.A, 5rts.1.A, 5rts.2.A, 5rtt.1.A, 5rtt.2.A, 5rtu.1.A, 5rtu.2.A, 5rtv.1.A, 5rtv.2.A, 5rtw.1.A, 5rtw.2.A, 5rtx.1.A, 5rtx.2.A, 5rty.1.A, 5rty.2.A, 5rtz.1.A, 5rtz.2.A, 5ru0.1.A, 5ru0.2.A, 5ru1.1.A, 5ru1.2.A, 5ru2.1.A, 5ru2.2.A, 5ru3.1.A, 5ru3.2.A, 5ru4.1.A, 5ru4.2.A, 5ru5.1.A, 5ru5.2.A, 5ru6.1.A, 5ru6.2.A, 5ru7.1.A, 5ru7.2.A, 5ru8.1.A, 5ru8.2.A, 5ru9.1.A, 5ru9.2.A, 5rua.1.A, 5rua.2.A, 5ruc.1.A, 5ruc.2.A, 5rud.1.A, 5rud.2.A, 5rue.1.A, 5rue.2.A, 5ruf.1.A, 5ruf.2.A, 5rug.1.A, 5rug.2.A, 5ruh.1.A, 5ruh.2.A, 5rui.1.A, 5rui.2.A, 5ruj.1.A, 5ruj.2.A, 5ruk.1.A, 5ruk.2.A, 5rul.1.A, 5rul.2.A, 5rum.1.A, 5rum.2.A, 5run.1.A, 5run.2.A, 5ruo.1.A, 5ruo.2.A, 5rup.1.A, 5rup.2.A, 5ruq.1.A, 5ruq.2.A, 5rur.1.A, 5rur.2.A, 5rus.1.A, 5rus.2.A, 5rut.1.A, 5rut.2.A, 5ruu.1.A, 5ruu.2.A, 5ruv.1.A, 5ruv.2.A, 5ruw.1.A, 5ruw.2.A, 5rux.1.A, 5rux.2.A, 5ruy.1.A, 5ruy.2.A, 5ruz.1.A, 5ruz.2.A, 5rv0.1.A, 5rv0.2.A, 5rv1.1.A, 5rv1.2.A, 5rv2.1.A, 5rv2.2.A, 5rv3.1.A, 5rv3.2.A, 5rv4.1.A, 5rv4.2.A, 5rv5.1.A, 5rv5.2.A, 5rv6.1.A, 5rv6.2.A, 5rv7.1.A, 5rv7.2.A, 5rv8.1.A, 5rv8.2.A, 5rv9.1.A, 5rv9.2.A, 5rva.1.A, 5rva.2.A, 5rvb.1.A, 5rvb.2.A, 5rvc.1.A, 5rvc.2.A, 5rvd.1.A, 5rvd.2.A, 5rve.1.A, 5rve.2.A, 5rvf.1.A, 5rvf.2.A, 5rvg.1.A, 5rvg.2.A, 5rvh.1.A, 5rvh.2.A, 5rvi.1.A, 5rvi.2.A, 5rvj.1.A, 5rvk.1.A, 5rvl.1.A, 5rvm.1.A, 5rvn.1.A, 5rvo.1.A, 5rvp.1.A, 5rvq.1.A, 5rvr.1.A, 5rvs.1.A, 5rvt.1.A, 5rvu.1.A, 5rvv.1.A, 5s18.1.A, 5s18.2.A, 5s1a.1.A, 5s1a.2.A, 5s1c.1.A, 5s1c.2.A, 5s1e.1.A, 5s1e.2.A, 5s1g.1.A, 5s1g.2.A, 5s1i.1.A, 5s1i.2.A, 5s1k.1.A, 5s1k.2.A, 5s1m.1.A, 5s1m.2.A, 5s1o.1.A, 5s1o.2.A, 5s1q.1.A, 5s1q.2.A, 5s1s.1.A, 5s1s.2.A, 5s1u.1.A, 5s1u.2.A, 5s1w.1.A, 5s1w.2.A, 5s1y.1.A, 5s1y.2.A, 5s20.1.A, 5s20.2.A, 5s22.1.A, 5s22.2.A, 5s24.1.A, 5s24.2.A, 5s26.1.A, 5s26.2.A, 5s27.1.A, 5s27.2.A, 5s28.1.A, 5s28.2.A, 5s29.1.A, 5s29.2.A, 5s2a.1.A, 5s2a.2.A, 5s2b.1.A, 5s2b.2.A, 5s2c.1.A, 5s2c.2.A, 5s2d.1.A, 5s2d.2.A, 5s2e.1.A, 5s2e.2.A, 5s2f.1.A, 5s2f.2.A, 5s2g.1.A, 5s2g.2.A, 5s2h.1.A, 5s2h.2.A, 5s2i.1.A, 5s2i.2.A, 5s2j.1.A, 5s2j.2.A, 5s2k.1.A, 5s2k.2.A, 5s2l.1.A, 5s2l.2.A, 5s2m.1.A, 5s2m.2.A, 5s2n.1.A, 5s2n.2.A, 5s2o.1.A, 5s2o.2.A, 5s2p.1.A, 5s2p.2.A, 5s2q.1.A, 5s2q.2.A, 5s2r.1.A, 5s2r.2.A, 5s2s.1.A, 5s2s.2.A, 5s2t.1.A, 5s2t.2.A, 5s2u.1.A, 5s2u.2.A, 5s2v.1.A, 5s2v.2.A, 5s2w.1.A, 5s2w.2.A, 5s2x.1.A, 5s2x.2.A, 5s2y.1.A, 5s2y.2.A, 5s2z.1.A, 5s2z.2.A, 5s30.1.A, 5s30.2.A, 5s31.1.A, 5s31.2.A, 5s32.1.A, 5s32.2.A, 5s33.1.A, 5s33.2.A, 5s34.1.A, 5s34.2.A, 5s35.1.A, 5s35.2.A, 5s36.1.A, 5s36.2.A, 5s37.1.A, 5s37.2.A, 5s38.1.A, 5s38.2.A, 5s39.1.A, 5s39.2.A, 5s3a.1.A, 5s3a.2.A, 5s3b.1.A, 5s3b.2.A, 5s3c.1.A, 5s3c.2.A, 5s3d.1.A, 5s3d.2.A, 5s3e.1.A, 5s3e.2.A, 5s3f.1.A, 5s3f.2.A, 5s3g.1.A, 5s3g.2.A, 5s3h.1.A, 5s3h.2.A, 5s3i.1.A, 5s3i.2.A, 5s3j.1.A, 5s3j.2.A, 5s3k.1.A, 5s3k.2.A, 5s3l.1.A, 5s3l.2.A, 5s3m.1.A, 5s3m.2.A, 5s3n.1.A, 5s3n.2.A, 5s3o.1.A, 5s3o.2.A, 5s3p.1.A, 5s3p.2.A, 5s3q.1.A, 5s3q.2.A, 5s3r.1.A, 5s3r.2.A, 5s3s.1.A, 5s3s.2.A, 5s3t.1.A, 5s3t.2.A, 5s3u.1.A, 5s3u.2.A, 5s3v.1.A, 5s3v.2.A, 5s3w.1.A, 5s3w.2.A, 5s3x.1.A, 5s3x.2.A, 5s3y.1.A, 5s3y.2.A, 5s3z.1.A, 5s3z.2.A, 5s40.1.A, 5s40.2.A, 5s41.1.A, 5s41.2.A, 5s42.1.A, 5s42.2.A, 5s43.1.A, 5s43.2.A, 5s44.1.A, 5s44.2.A, 5s45.1.A, 5s45.2.A, 5s46.1.A, 5s46.2.A, 5s47.1.A, 5s47.2.A, 5s48.1.A, 5s48.2.A, 5s49.1.A, 5s49.2.A, 5s4a.1.A, 5s4a.2.A, 5s4b.1.A, 5s4b.2.A, 5s4c.1.A, 5s4c.2.A, 5s4d.1.A, 5s4d.2.A, 5s4e.1.A, 5s4e.2.A, 5s4f.1.A, 5s4f.2.A, 5s4g.1.A, 5s4g.2.A, 5s4h.1.A, 5s4h.2.A, 5s4i.1.A, 5s4i.2.A, 5s4j.1.A, 5s4j.2.A, 5s4k.1.A, 5s4k.2.A, 5s73.1.A, 5s73.2.A, 5s74.1.A, 5s74.2.A, 5soi.1.A, 5soi.2.A, 5soj.1.A, 5soj.2.A, 5sok.1.A, 5sok.2.A, 5sol.1.A, 5sol.2.A, 5som.1.A, 5som.2.A, 5son.1.A, 5son.2.A, 5soo.1.A, 5soo.2.A, 5sop.1.A, 5sop.2.A, 5soq.1.A, 5soq.2.A, 5sor.1.A, 5sor.2.A, 5sos.1.A, 5sos.2.A, 5sot.1.A, 5sot.2.A, 5sou.1.A, 5sou.2.A, 5sov.1.A, 5sov.2.A, 5sow.1.A, 5sow.2.A, 5sox.1.A, 5sox.2.A, 5soy.1.A, 5soy.2.A, 5soz.1.A, 5soz.2.A, 5sp0.1.A, 5sp0.2.A, 5sp1.1.A, 5sp1.2.A, 5sp2.1.A, 5sp2.2.A, 5sp3.1.A, 5sp3.2.A, 5sp4.1.A, 5sp4.2.A, 5sp6.1.A, 5sp6.2.A, 5sp7.1.A, 5sp7.2.A, 5sp8.1.A, 5sp8.2.A, 5sp9.1.A, 5sp9.2.A, 5spa.1.A, 5spa.2.A, 5spb.1.A, 5spb.2.A, 5spc.1.A, 5spc.2.A, 5spd.1.A, 5spd.2.A, 5spe.1.A, 5spe.2.A, 5spf.1.A, 5spf.2.A, 5spg.1.A, 5spg.2.A, 5sph.1.A, 5sph.2.A, 5spi.1.A, 5spi.2.A, 5spj.1.A, 5spj.2.A, 5spk.1.A, 5spk.2.A, 5spl.1.A, 5spl.2.A, 5spm.1.A, 5spm.2.A, 5spn.1.A, 5spn.2.A, 5spo.1.A, 5spo.2.A, 5spp.1.A, 5spp.2.A, 5spq.1.A, 5spq.2.A, 5spr.1.A, 5spr.2.A, 5sps.1.A, 5sps.2.A, 5spt.1.A, 5spt.2.A, 5spu.1.A, 5spu.2.A, 5spv.1.A, 5spv.2.A, 5spw.1.A, 5spw.2.A, 5spx.1.A, 5spx.2.A, 5spy.1.A, 5spy.2.A, 5spz.1.A, 5spz.2.A, 5sq0.1.A, 5sq0.2.A, 5sq1.1.A, 5sq1.2.A, 5sq2.1.A, 5sq2.2.A, 5sq3.1.A, 5sq3.2.A, 5sq4.1.A, 5sq4.2.A, 5sq5.1.A, 5sq5.2.A, 5sq6.1.A, 5sq6.2.A, 5sq7.1.A, 5sq7.2.A, 5sq8.1.A, 5sq8.2.A, 5sq9.1.A, 5sq9.2.A, 5sqa.1.A, 5sqa.2.A, 5sqb.1.A, 5sqb.2.A, 5sqc.1.A, 5sqc.2.A, 5sqd.1.A, 5sqd.2.A, 5sqe.1.A, 5sqe.2.A, 5sqf.1.A, 5sqf.2.A, 5sqg.1.A, 5sqg.2.A, 5sqh.1.A, 5sqh.2.A, 5sqi.1.A, 5sqi.2.A, 5sqj.1.A, 5sqj.2.A, 5sqk.1.A, 5sqk.2.A, 5sql.1.A, 5sql.2.A, 5sqm.1.A, 5sqm.2.A, 5sqn.1.A, 5sqn.2.A, 5sqo.1.A, 5sqo.2.A, 5sqp.1.A, 5sqp.2.A, 5sqq.1.A, 5sqq.2.A, 5sqr.1.A, 5sqr.2.A, 5sqs.1.A, 5sqs.2.A, 5sqt.1.A, 5sqt.2.A, 5squ.1.A, 5squ.2.A, 5sqv.1.A, 5sqv.2.A, 5sqw.1.A, 5sqw.2.A, 5sqx.1.A, 5sqx.2.A, 5sqy.1.A, 5sqy.2.A, 5sqz.1.A, 5sqz.2.A, 5sr0.1.A, 5sr0.2.A, 5sr1.1.A, 5sr1.2.A, 5sr2.1.A, 5sr2.2.A, 5sr3.1.A, 5sr3.2.A, 5sr4.1.A, 5sr4.2.A, 5sr5.1.A, 5sr5.2.A, 5sr6.1.A, 5sr6.2.A, 5sr7.1.A, 5sr7.2.A, 5sr8.1.A, 5sr8.2.A, 5sr9.1.A, 5sr9.2.A, 5sra.1.A, 5sra.2.A, 5srb.1.A, 5srb.2.A, 5src.1.A, 5src.2.A, 5srd.1.A, 5srd.2.A, 5sre.1.A, 5sre.2.A, 5srf.1.A, 5srf.2.A, 5srg.1.A, 5srg.2.A, 5srh.1.A, 5srh.2.A, 5sri.1.A, 5sri.2.A, 5srj.1.A, 5srj.2.A, 5srk.1.A, 5srk.2.A, 5srl.1.A, 5srl.2.A, 5srm.1.A, 5srm.2.A, 5srn.1.A, 5srn.2.A, 5sro.1.A, 5sro.2.A, 5srp.1.A, 5srp.2.A, 5srq.1.A, 5srq.2.A, 5srr.1.A, 5srr.2.A, 5srs.1.A, 5srs.2.A, 5srt.1.A, 5srt.2.A, 5sru.1.A, 5sru.2.A, 5srv.1.A, 5srv.2.A, 5srw.1.A, 5srw.2.A, 5srx.1.A, 5srx.2.A, 5sry.1.A, 5sry.2.A, 5srz.1.A, 5srz.2.A, 5ss0.1.A, 5ss0.2.A, 5ss1.1.A, 5ss1.2.A, 5ss2.1.A, 5ss2.2.A, 5ss3.1.A, 5ss3.2.A, 5ss4.1.A, 5ss4.2.A, 5ss5.1.A, 5ss5.2.A, 5ss6.1.A, 5ss6.2.A, 5ss7.1.A, 5ss7.2.A, 5ss8.1.A, 5ss8.2.A, 5ss9.1.A, 5ss9.2.A, 5ssa.1.A, 5ssa.2.A, 5ssb.1.A, 5ssb.2.A, 5ssc.1.A, 5ssc.2.A, 5ssd.1.A, 5ssd.2.A, 5sse.1.A, 5sse.2.A, 5ssf.1.A, 5ssf.2.A, 5ssg.1.A, 5ssg.2.A, 5ssh.1.A, 5ssh.2.A, 5ssi.1.A, 5ssi.2.A, 5ssj.1.A, 5ssj.2.A, 5ssk.1.A, 5ssk.2.A, 5ssl.1.A, 5ssl.2.A, 5ssm.1.A, 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