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Spike glycoprotein (S glycoprotein) | P0DTC2

Created: Oct. 21, 2020 at 11:06

Model Results

Order by:
Oligo-State Ligands GMQE QMEAN
Homo-trimer (matching prediction)1 x NAG, 1 x NAG-NAG, 1 x NAG-NAG-FUC, 2 x NAG-NAG-MAN0.72-1.23
Global Quality EstimateLocal Quality EstimateComparison
TemplateSeq IdentityCoverageDescription
6xr8.1.A100.00%
Spike glycoprotein
Distinct conformational states of SARS-CoV-2 spike protein

Model-Template Alignment

Oligo-State Ligands GMQE QMEAN
Homo-trimer (requested by user) None 0.69-0.73
Global Quality EstimateLocal Quality EstimateComparison
TemplateSeq IdentityCoverageDescription
6zge.1.A99.67%
Spike glycoprotein
Uncleavable Spike Protein of SARS-CoV-2 in Closed Conformation

Model-Template Alignment

Oligo-State Ligands GMQE QMEAN
Homo-trimer (matching prediction)8 x NAG, 3 x NAG-NAG0.65-2.33
Global Quality EstimateLocal Quality EstimateComparison
TemplateSeq IdentityCoverageDescription
6zwv.1.A99.92%
Spike glycoprotein
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs

Model-Template Alignment

Oligo-State Ligands GMQE QMEAN
Homo-trimer (matching prediction) None 0.60-4.00
Global Quality EstimateLocal Quality EstimateComparison
TemplateSeq IdentityCoverageDescription
6acc.1.A76.79%
Spike glycoprotein
Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-free conformation with three RBD in down conformation

Model-Template Alignment

Oligo-State Ligands GMQE QMEAN
Homo-trimer (matching prediction) None 0.60-3.71
Global Quality EstimateLocal Quality EstimateComparison
TemplateSeq IdentityCoverageDescription
6acd.1.A76.79%
Spike glycoprotein
Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-free conformation with one RBD in up conformation

Model-Template Alignment

Oligo-State Ligands GMQE QMEAN
Monomer None 0.08-1.86
Global Quality EstimateLocal Quality EstimateComparison
TemplateSeq IdentityCoverageDescription
6vw1.1.B85.71%
SARS-CoV-2 chimeric RBD
Structure of SARS-CoV-2 chimeric receptor-binding domain complexed with its receptor human ACE2

Model-Template Alignment