Export Alignment
Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

Background |  |  |

3D Viewer
NGL PV

### Uridylate-specific endoribonuclease nsp15 | P0DTD1 PRO_0000449632

### Created: May 5, 2023, 9:33 p.m. at 21:33

Order by:

Oligo-State
  Homo-hexamer
  (matching prediction)
GMQE
  0.94
QMEANDisCo Global:
  0.87 ± 0.05

Ligands
  6 x U5P
  6 x URIDINE-5'-MONOPHOSPHATE

  U5P.1: | 9 residues within 4Å: Chain A: H.249, K.289, V.291, C.292, S.293, Y.342, P.343, K.344, L.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.249, A:S.293, A:S.293, A:S.293, A:L.345
  U5P.11: | 8 residues within 4Å: Chain B: H.249, K.289, V.291, C.292, S.293, Y.342, K.344, L.345 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.342 Hydrogen bonds: B:H.249, B:S.293, B:S.293, B:S.293, B:L.345
  U5P.22: | 9 residues within 4Å: Chain C: H.249, K.289, V.291, C.292, S.293, Y.342, P.343, K.344, L.345 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:H.249, C:S.293, C:S.293, C:S.293, C:L.345
  U5P.32: | 8 residues within 4Å: Chain D: H.249, K.289, V.291, C.292, S.293, Y.342, K.344, L.345 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:Y.342 Hydrogen bonds: D:H.249, D:S.293, D:S.293, D:S.293, D:L.345
  U5P.43: | 9 residues within 4Å: Chain E: H.249, K.289, V.291, C.292, S.293, Y.342, P.343, K.344, L.345 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:H.249, E:S.293, E:S.293, E:S.293, E:L.345
  U5P.53: | 8 residues within 4Å: Chain F: H.249, K.289, V.291, C.292, S.293, Y.342, K.344, L.345 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:Y.342 Hydrogen bonds: F:H.249, F:S.293, F:S.293, F:S.293, F:L.345

QMEANDisCo Local
QMEAN Z-Scores

Template
6wlc.1.A Uridylate-specific endoribonuclease
Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-5'-Monophosphate

Seq Identity
  100.00%
Coverage

Biounit Oligo State | Homo-hexamer
QSQE | 0.92
Method | X-ray, 1.82 Å
Seq Similarity | 0.61
Coverage | 1.00
Range | 1-346

Ligand | Added to Model | Description
--- | --- | ---
U5P | ✓ | URIDINE-5'-MONOPHOSPHATE
U5P | ✓ | URIDINE-5'-MONOPHOSPHATE
U5P | ✓ | URIDINE-5'-MONOPHOSPHATE
U5P | ✓ | URIDINE-5'-MONOPHOSPHATE
U5P | ✓ | URIDINE-5'-MONOPHOSPHATE
U5P | ✓ | URIDINE-5'-MONOPHOSPHATE
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
FMT | ✕ - Not biologically relevant. | FORMIC ACID
FMT | ✕ - Not in contact with model. | FORMIC ACID
FMT | ✕ - Not biologically relevant. | FORMIC ACID
FMT | ✕ - Not in contact with model. | FORMIC ACID
FMT | ✕ - Not biologically relevant. | FORMIC ACID
FMT | ✕ - Not in contact with model. | FORMIC ACID
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
TRS | ✕ - Not biologically relevant. | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRS | ✕ - Not biologically relevant. | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRS | ✕ - Not biologically relevant. | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRS | ✕ - Not biologically relevant. | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRS | ✕ - Not biologically relevant. | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRS | ✕ - Not biologically relevant. | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Model-Template Alignment

Oligo-State
  Homo-hexamer
  (matching prediction)
GMQE
  0.94
QMEANDisCo Global:
  0.86 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6w01.1.A Uridylate-specific endoribonuclease
The 1.9 A Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with a Citrate

Seq Identity
  100.00%
Coverage

Biounit Oligo State | Homo-hexamer
QSQE | 0.92
Method | X-ray, 1.90 Å
Seq Similarity | 0.61
Coverage | 1.00
Range | 1-345

Ligand | Added to Model | Description
--- | --- | ---
CIT | ✕ - Not biologically relevant. | CITRIC ACID
CIT | ✕ - Not biologically relevant. | CITRIC ACID
CIT | ✕ - Not biologically relevant. | CITRIC ACID
CIT | ✕ - Not biologically relevant. | CITRIC ACID
CIT | ✕ - Not biologically relevant. | CITRIC ACID
CIT | ✕ - Not biologically relevant. | CITRIC ACID
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER
PEG | ✕ - Not biologically relevant. | DI(HYDROXYETHYL)ETHER

Model-Template Alignment

Oligo-State
  Homo-hexamer
  (matching prediction)
GMQE
  0.92
QMEANDisCo Global:
  0.85 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2h85.1.A Putative orf1ab polyprotein
Crystal Structure of Nsp 15 from SARS

Seq Identity
  88.12%
Coverage

Biounit Oligo State | Homo-hexamer
QSQE | 0.87
Method | X-ray, 2.60 Å
Seq Similarity | 0.58
Coverage | 1.00
Range | 1-345

Model-Template Alignment

Oligo-State
  Homo-hexamer
  (matching prediction)
GMQE
  0.91
QMEANDisCo Global:
  0.84 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2rhb.1.A Uridylate-specific endoribonuclease
Crystal structure of Nsp15-H234A mutant- Hexamer in asymmetric unit

Seq Identity
  88.44%
Coverage

Biounit Oligo State | Homo-hexamer
QSQE | 0.88
Method | X-ray, 2.80 Å
Seq Similarity | 0.58
Coverage | 1.00
Range | 1-344

Model-Template Alignment

Click model image to view in 3D
Click model image to view in 3D

### Delete Model - ""

Are you sure you want to delete this model?
(This really can't be undone!)