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SWISS-MODEL Homology Modelling Report |
Model Building Report
This document lists the results for the homology modelling project "Spike glycoprotein / ACE2_HUMAN hetero-oligomeric complex | P0DTC2, Q9BYF1" submitted to SWISS-MODEL workspace on May 5, 2023, 9:34 p.m..The submitted primary amino acid sequence is given in Table T1.
If you use any results in your research, please cite the relevant publications:
- Waterhouse, A., Bertoni, M., Bienert, S., Studer, G., Tauriello, G., Gumienny, R.,
Heer, F.T., de Beer, T.A.P., Rempfer, C., Bordoli, L., Lepore, R., Schwede, T.
SWISS-MODEL: homology modelling of protein structures and complexes.
Nucleic Acids Res. 46(W1), W296-W303 (2018).
- Bienert, S., Waterhouse, A., de Beer, T.A.P., Tauriello, G., Studer,
G., Bordoli, L., Schwede, T. The SWISS-MODEL Repository - new features and
functionality. Nucleic Acids Res. 45, D313-D319 (2017).
- Studer, G., Tauriello, G., Bienert, S.,
Biasini, M., Johner, N., Schwede, T. ProMod3 - A versatile homology
modelling toolbox. PLOS Comp. Biol. 17(1), e1008667 (2021).
- Studer, G., Rempfer, C., Waterhouse, A.M.,
Gumienny, G., Haas, J., Schwede, T. QMEANDisCo - distance constraints
applied on model quality estimation. Bioinformatics 36, 1765-1771 (2020).
- Bertoni, M., Kiefer, F., Biasini, M., Bordoli, L.,
Schwede, T. Modeling protein quaternary structure of homo- and
hetero-oligomers beyond binary interactions by homology. Scientific
Reports 7 (2017).
Results
The SWISS-MODEL template library (SMTL version 2023-05-05, PDB release 2023-04-28) was searched with for evolutionary related structures matching the target sequences in Table T1. For details on the template search, see Materials and Methods. Overall 610 templates were found (Table T2).
Models
The following models were built (see Materials and Methods "Model Building"):
Model #02 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
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PDB | ProMod3 3.3.0 | hetero-3-2-mer |
None
|
0.74 | 0.77 ± 0.05 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
7mjm.1 | 99.45 | hetero-3-2-mer | - | BLAST | EM | - | 0.62 | DE: 19-614 ABC: 14-1147 | 0.87 | Processed angiotensin-converting enzyme 2 Spike glycoprotein |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
NAG.19 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.20 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.21 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.22 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.23 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.24 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.25 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.26 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.27 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.28 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.29 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.30 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.31 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.32 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.33 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.34 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.35 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.36 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.37 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.38 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.39 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.40 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.41 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.42 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.43 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.44 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.45 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.46 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.47 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.48 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.49 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.50 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.1 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.2 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.3 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.4 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.5 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.6 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.7 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.8 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.9 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.10 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.11 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.12 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.13 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.14 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.15 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.16 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.17 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.18 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
Target MSSSSWLLLSLVAVTAAQSTIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLA
7mjm.1.D -----------------QSTIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLA
Target QMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNE
7mjm.1.D QMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNE
Target RLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHL
7mjm.1.D RLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHL
Target HAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGL
7mjm.1.D HAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGL
Target PNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGF
7mjm.1.D PNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGF
Target HEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEM
7mjm.1.D HEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEM
Target KREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRL
7mjm.1.D KREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRL
Target GKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPYADQSIKVRISLKSALGDKAYEWNDNEM
7mjm.1.D GKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPYAD-------------------------
Target YLFRSSVAYAMRQYFLKVKNQMILFGEEDVRVANLKPRISFNFFVTAPKNVSDIIPRTEVEKAIRMSRSRINDAFRLNDN
7mjm.1.D --------------------------------------------------------------------------------
Target SLEFLGIQPTLGPPNQPPVSIWLIVFGVVMGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDISKGENNPGFQNTDD
7mjm.1.D --------------------------------------------------------------------------------
Target VQTSF
7mjm.1.D -----
Target MSSSSWLLLSLVAVTAAQSTIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLA
7mjm.1.E -----------------QSTIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLA
Target QMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNE
7mjm.1.E QMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNE
Target RLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHL
7mjm.1.E RLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHL
Target HAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGL
7mjm.1.E HAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGL
Target PNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGF
7mjm.1.E PNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGF
Target HEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEM
7mjm.1.E HEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEM
Target KREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRL
7mjm.1.E KREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRL
Target GKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPYADQSIKVRISLKSALGDKAYEWNDNEM
7mjm.1.E GKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPYAD-------------------------
Target YLFRSSVAYAMRQYFLKVKNQMILFGEEDVRVANLKPRISFNFFVTAPKNVSDIIPRTEVEKAIRMSRSRINDAFRLNDN
7mjm.1.E --------------------------------------------------------------------------------
Target SLEFLGIQPTLGPPNQPPVSIWLIVFGVVMGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDISKGENNPGFQNTDD
7mjm.1.E --------------------------------------------------------------------------------
Target VQTSF
7mjm.1.E -----
Target MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
7mjm.1.A MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
Target NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
7mjm.1.A NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
Target SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
7mjm.1.A SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
Target LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
7mjm.1.A LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
Target QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
7mjm.1.A QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
Target VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
7mjm.1.A VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
Target NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
7mjm.1.A NGVEGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
Target PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
7mjm.1.A PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
Target NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
7mjm.1.A NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
Target SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
7mjm.1.A SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
Target NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
7mjm.1.A NFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
Target TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
7mjm.1.A TITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALN
Target TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
7mjm.1.A TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
Target DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
7mjm.1.A DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
Target FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
7mjm.1.A FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Target QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
7mjm.1.A QELGKYEQ-----------------------------------------------------------------
Target MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
7mjm.1.B MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
Target NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
7mjm.1.B NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
Target SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
7mjm.1.B SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
Target LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
7mjm.1.B LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
Target QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
7mjm.1.B QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
Target VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
7mjm.1.B VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
Target NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
7mjm.1.B NGVEGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
Target PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
7mjm.1.B PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
Target NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
7mjm.1.B NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
Target SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
7mjm.1.B SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
Target NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
7mjm.1.B NFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
Target TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
7mjm.1.B TITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALN
Target TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
7mjm.1.B TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
Target DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
7mjm.1.B DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
Target FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
7mjm.1.B FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Target QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
7mjm.1.B QELGKYEQ-----------------------------------------------------------------
Target MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
7mjm.1.C MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
Target NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
7mjm.1.C NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
Target SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
7mjm.1.C SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
Target LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
7mjm.1.C LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
Target QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
7mjm.1.C QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
Target VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
7mjm.1.C VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
Target NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
7mjm.1.C NGVEGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
Target PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
7mjm.1.C PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
Target NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
7mjm.1.C NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
Target SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
7mjm.1.C SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
Target NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
7mjm.1.C NFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
Target TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
7mjm.1.C TITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALN
Target TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
7mjm.1.C TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
Target DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
7mjm.1.C DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
Target FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
7mjm.1.C FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Target QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
7mjm.1.C QELGKYEQ-----------------------------------------------------------------
Model #01 |
File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global |
---|---|---|---|---|---|---|
![]() |
PDB | ProMod3 3.3.0 | hetero-3-1-mer |
10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose;
4 x NAG-NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose; |
0.72 | 0.72 ± 0.05 |
|
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|---|
7kj2.1 | 99.67 | hetero-3-1-mer | - | BLAST | EM | - | 0.62 | D: 21-613 BAC: 27-1147 | 0.87 | Angiotensin-converting enzyme 2 Spike glycoprotein |
Included Ligands
Ligand | Description |
---|---|
10 x NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose |
4 x NAG-NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
Excluded ligands
Ligand Name.Number | Reason for Exclusion | Description |
---|---|---|
NAG.18 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.19 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.20 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.21 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.22 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.23 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.24 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.25 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.26 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.27 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.28 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.31 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.32 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.34 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.35 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.39 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.40 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.41 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.42 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.43 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.44 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.46 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.47 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.49 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.51 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG.53 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.3 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.4 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.5 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.6 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.8 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.9 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.10 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.11 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.12 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.14 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.15 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.16 | Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
NAG-NAG.17 | Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose |
Target MSSSSWLLLSLVAVTAAQSTIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLA
7kj2.1.D -----------VAVTAAQSTIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLA
Target QMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNE
7kj2.1.D QMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNE
Target RLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHL
7kj2.1.D RLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHL
Target HAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGL
7kj2.1.D HAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGL
Target PNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGF
7kj2.1.D PNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGF
Target HEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEM
7kj2.1.D HEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEM
Target KREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRL
7kj2.1.D KREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRL
Target GKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPYADQSIKVRISLKSALGDKAYEWNDNEM
7kj2.1.D GKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPYAD-------------------------
Target YLFRSSVAYAMRQYFLKVKNQMILFGEEDVRVANLKPRISFNFFVTAPKNVSDIIPRTEVEKAIRMSRSRINDAFRLNDN
7kj2.1.D --------------------------------------------------------------------------------
Target SLEFLGIQPTLGPPNQPPVSIWLIVFGVVMGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDISKGENNPGFQNTDD
7kj2.1.D --------------------------------------------------------------------------------
Target VQTSF
7kj2.1.D -----
Target MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
7kj2.1.B -------------QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
Target NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
7kj2.1.B NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
Target SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
7kj2.1.B SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
Target LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
7kj2.1.B LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
Target QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
7kj2.1.B QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
Target VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
7kj2.1.B VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
Target NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
7kj2.1.B NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
Target PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
7kj2.1.B PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
Target NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
7kj2.1.B NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGGSGSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
Target SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
7kj2.1.B SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
Target NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
7kj2.1.B NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
Target TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
7kj2.1.B TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
Target TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
7kj2.1.B TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
Target DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
7kj2.1.B DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
Target FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
7kj2.1.B FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Target QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
7kj2.1.B QELGKYEQ-----------------------------------------------------------------
Target MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
7kj2.1.A -------------QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
Target NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
7kj2.1.A NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
Target SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
7kj2.1.A SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
Target LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
7kj2.1.A LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
Target QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
7kj2.1.A QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
Target VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
7kj2.1.A VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
Target NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
7kj2.1.A NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
Target PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
7kj2.1.A PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
Target NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
7kj2.1.A NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGGSGSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
Target SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
7kj2.1.A SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
Target NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
7kj2.1.A NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
Target TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
7kj2.1.A TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
Target TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
7kj2.1.A TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
Target DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
7kj2.1.A DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
Target FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
7kj2.1.A FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Target QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
7kj2.1.A QELGKYEQ-----------------------------------------------------------------
Target MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
7kj2.1.C -------------QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD
Target NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
7kj2.1.C NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
Target SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
7kj2.1.C SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT
Target LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
7kj2.1.C LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV
Target QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
7kj2.1.C QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
Target VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
7kj2.1.C VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC
Target NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
7kj2.1.C NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL
Target PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
7kj2.1.C PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS
Target NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
7kj2.1.C NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGGSGSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI
Target SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
7kj2.1.C SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
Target NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
7kj2.1.C NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG
Target TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
7kj2.1.C TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN
Target TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
7kj2.1.C TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV
Target DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
7kj2.1.C DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
Target FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
7kj2.1.C FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Target QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
7kj2.1.C QELGKYEQ-----------------------------------------------------------------
Materials and Methods
Model Building
Models are built based on the target-template alignment using ProMod3 (Studer et al.). Coordinates which are conserved between the target and the template are copied from the template to the model. Insertions and deletions are remodelled using a fragment library. Side chains are then rebuilt. Finally, the geometry of the resulting model is regularized by using a force field.
Model Quality Estimation
The global and per-residue model quality has been assessed using the QMEAN scoring function (Studer et al.).
Ligand Modelling
Ligands present in the template structure are transferred by homology to the model when the following criteria are met: (a) The ligands are annotated as biologically relevant in the template library, (b) the ligand is in contact with the model, (c) the ligand is not clashing with the protein, (d) the residues in contact with the ligand are conserved between the target and the template. If any of these four criteria is not satisfied, a certain ligand will not be included in the model. The model summary includes information on why and which ligand has not been included.
Oligomeric State Conservation
The quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. The method (Bertoni et al.) is based on a supervised machine learning algorithm, Support Vector Machines (SVM), which combines interface conservation, structural clustering, and other template features to provide a quaternary structure quality estimate (QSQE). The QSQE score is a number between 0 and 1, reflecting the expected accuracy of the interchain contacts for a model built based a given alignment and template. Higher numbers indicate higher reliability. This complements the GMQE score which estimates the accuracy of the tertiary structure of the resulting model.
References
- BLAST
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., Madden, T.L. BLAST+: architecture and applications. BMC Bioinformatics 10, 421-430 (2009). - HHblits
Steinegger, M., Meier, M., Mirdita, M., Vöhringer, H., Haunsberger, S. J., Söding, J. HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinformatics 20, 473 (2019).
Table T1:
Primary amino acid sequences for which templates were searched and models were built.
IRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGY
FKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK
CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF
VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPT
NGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP
GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLG
AENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF
NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM
QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGR
LQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGT
HWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
QQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYG
DYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQ
AWDAQRIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGF
HEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEMKREIVGVVEPVPHDETYCDP
ASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRLGKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNK
NSFVGWSTDWSPYADQSIKVRISLKSALGDKAYEWNDNEMYLFRSSVAYAMRQYFLKVKNQMILFGEEDVRVANLKPRISFNFFVTAPKNVSDIIPRTEV
EKAIRMSRSRINDAFRLNDNSLEFLGIQPTLGPPNQPPVSIWLIVFGVVMGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDISKGENNPGFQNTDD
VQTSF
Table T2:
Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Coverage | Description |
---|---|---|---|---|---|---|---|---|---|
7wrh.1 | 92.55 | hetero-3-1-mer | 0.55 | BLAST | EM | NA | 0.59 | 0.86 | Processed angiotensin-converting enzyme 2; Spike glycoprotein |
6acg.1 | 84.55 | hetero-3-1-mer | 0.52 | BLAST / HHblits | EM | NA | 0.57 | 0.86 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7xo4.1 | 90.53 | hetero-3-2-mer | 0.42 | HHblits | EM | NA | 0.59 | 0.97 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7xo4.1 | 90.53 | hetero-3-2-mer | 0.42 | HHblits | EM | NA | 0.59 | 0.97 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7e3j.1 | 88.00 | hetero-1-1-mer | 0.56 | BLAST | X-ray | 2.99Å | 0.59 | 0.44 | ACE2; Spike protein S1 |
7c8j.1 | 84.81 | hetero-1-1-mer | 0.51 | BLAST | X-ray | 3.18Å | 0.58 | 0.43 | Angiotensin-converting enzyme; SARS-CoV-2 Receptor binding domain |
7l7f.1 | 98.92 | hetero-2-2-mer | 0.33 | HHblits | EM | NA | 0.62 | 0.49 | Angiotensin-converting enzyme 2; Spike glycoprotein, Envelope glycoprotein fusion |
7xbh.1 | 96.34 | hetero-1-1-mer | 0.63 | BLAST | X-ray | 3.02Å | 0.62 | 0.39 | Processed angiotensin-converting enzyme 2; RshSTT182/200 coronavirus receptor binding domain |
7wse.1 | 87.11 | hetero-1-1-mer | 0.62 | BLAST | EM | NA | 0.58 | 0.44 | Angiotensin-converting enzyme; Spike protein S1 |
7ya1.1 | 98.48 | hetero-1-1-mer | 0.62 | BLAST | EM | NA | 0.62 | 0.38 | Angiotensin-converting enzyme 2; Spike protein S1 |
7ya1.1 | 98.48 | hetero-1-1-mer | 0.62 | BLAST / HHblits | EM | NA | 0.62 | 0.38 | Angiotensin-converting enzyme 2; Spike protein S1 |
7ya1.1 | 98.10 | hetero-1-1-mer | 0.62 | BLAST / HHblits | EM | NA | 0.62 | 0.38 | Angiotensin-converting enzyme 2; Spike protein S1 |
7ya1.1 | 98.09 | hetero-1-1-mer | 0.62 | HHblits | EM | NA | 0.62 | 0.38 | Angiotensin-converting enzyme 2; Spike protein S1 |
7xbh.1 | 93.89 | hetero-1-1-mer | 0.61 | BLAST / HHblits | X-ray | 3.02Å | 0.60 | 0.39 | Processed angiotensin-converting enzyme 2; RshSTT182/200 coronavirus receptor binding domain |
7drv.1 | 97.31 | hetero-1-1-mer | 0.59 | BLAST | X-ray | 3.09Å | 0.62 | 0.39 | Angiotensin-converting enzyme 2; Spike glycoprotein |
6vw1.2 | 96.19 | hetero-1-1-mer | 0.60 | BLAST | X-ray | 2.68Å | 0.62 | 0.39 | Angiotensin-converting enzyme 2; SARS-CoV-2 chimeric RBD |
7drv.1 | 97.31 | hetero-1-1-mer | 0.59 | BLAST / HHblits | X-ray | 3.09Å | 0.62 | 0.39 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7vib.1 | 96.83 | hetero-1-1-mer | 0.60 | BLAST / HHblits | X-ray | 3.20Å | 0.62 | 0.38 | Angiotensin-converting enzyme 2; Spike glycoprotein |
6vw1.2 | 96.18 | hetero-1-1-mer | 0.59 | BLAST / HHblits | X-ray | 2.68Å | 0.62 | 0.39 | Angiotensin-converting enzyme 2; SARS-CoV-2 chimeric RBD |
7drv.1 | 96.19 | hetero-1-1-mer | 0.59 | BLAST / HHblits | X-ray | 3.09Å | 0.61 | 0.39 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7drv.1 | 96.18 | hetero-1-1-mer | 0.59 | HHblits | X-ray | 3.09Å | 0.61 | 0.39 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7f5r.3 | 87.85 | hetero-1-1-mer | 0.58 | BLAST / HHblits | X-ray | 3.01Å | 0.59 | 0.38 | mink ACE2; Spike protein S1 |
7ddp.1 | 96.65 | hetero-1-1-mer | 0.57 | BLAST | EM | NA | 0.62 | 0.39 | Angiotensin-converting enzyme 2; Spike protein S1 |
7c8d.1 | 89.00 | hetero-1-1-mer | 0.58 | BLAST | EM | NA | 0.59 | 0.44 | Angiotensin-converting enzyme 2; Spike protein S1 |
6lzg.1 | 100.00 | hetero-1-1-mer | 0.55 | BLAST / HHblits | X-ray | 2.50Å | 0.63 | 0.39 | Angiotensin-converting enzyme 2; Spike protein S1 |
7ekh.1 | 99.76 | hetero-1-1-mer | 0.55 | HHblits | X-ray | 2.40Å | 0.63 | 0.39 | Angiotensin-converting enzyme 2; Spike protein S1 |
7whh.1 | 97.72 | hetero-1-1-mer | 0.56 | BLAST / HHblits | X-ray | 2.60Å | 0.62 | 0.38 | Processed angiotensin-converting enzyme 2; Spike glycoprotein |
7w6u.1 | 90.70 | hetero-1-1-mer | 0.55 | HHblits | X-ray | 2.56Å | 0.60 | 0.39 | Angiotensin-converting enzyme; Spike protein S1 |
7wsk.1 | 87.48 | hetero-1-1-mer | 0.56 | BLAST | X-ray | 3.30Å | 0.59 | 0.40 | Processed angiotensin-converting enzyme 2; Spike protein S1 |
7ufk.2 | 95.31 | hetero-1-1-mer | 0.54 | HHblits | X-ray | 2.38Å | 0.61 | 0.39 | Angiotensin-converting enzyme 2; Spike protein S1 |
7xbf.1 | 96.23 | hetero-1-1-mer | 0.54 | BLAST | X-ray | 3.51Å | 0.62 | 0.40 | Processed angiotensin-converting enzyme 2; RshSTT182/200 coronavirus receptor binding domain insert2 |
7xb1.1 | 97.72 | hetero-1-1-mer | 0.55 | BLAST / HHblits | X-ray | 2.70Å | 0.62 | 0.38 | Angiotensin-converting enzyme 2; Spike protein S1 |
7w6r.1 | 88.16 | hetero-1-1-mer | 0.53 | BLAST | X-ray | 2.60Å | 0.59 | 0.39 | Angiotensin-converting enzyme; Spike glycoprotein |
7w6r.1 | 88.14 | hetero-1-1-mer | 0.53 | BLAST / HHblits | X-ray | 2.60Å | 0.59 | 0.39 | Angiotensin-converting enzyme; Spike glycoprotein |
7vib.2 | 96.82 | hetero-1-1-mer | 0.53 | HHblits | X-ray | 3.20Å | 0.62 | 0.38 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7xbf.1 | 93.41 | hetero-1-1-mer | 0.53 | BLAST / HHblits | X-ray | 3.51Å | 0.60 | 0.40 | Processed angiotensin-converting enzyme 2; RshSTT182/200 coronavirus receptor binding domain insert2 |
7w6r.1 | 86.98 | hetero-1-1-mer | 0.53 | BLAST / HHblits | X-ray | 2.60Å | 0.58 | 0.39 | Angiotensin-converting enzyme; Spike glycoprotein |
7w6r.1 | 86.96 | hetero-1-1-mer | 0.53 | HHblits | X-ray | 2.60Å | 0.58 | 0.39 | Angiotensin-converting enzyme; Spike glycoprotein |
7fc5.1 | 90.55 | hetero-1-1-mer | 0.52 | BLAST | X-ray | 2.89Å | 0.60 | 0.38 | Angiotensin-converting enzyme; Spike protein S1 |
7fc5.1 | 90.52 | hetero-1-1-mer | 0.52 | BLAST / HHblits | X-ray | 2.89Å | 0.60 | 0.38 | Angiotensin-converting enzyme; Spike protein S1 |
7p8i.1 | 96.20 | hetero-1-1-mer | 0.51 | HHblits | X-ray | 4.50Å | 0.61 | 0.39 | Processed angiotensin-converting enzyme 2; Spike glycoprotein |
7wsh.1 | 86.59 | hetero-1-1-mer | 0.51 | BLAST / HHblits | EM | NA | 0.58 | 0.48 | Angiotensin-converting enzyme; Spike protein S1 |
7xby.1 | 88.23 | hetero-1-1-mer | 0.50 | BLAST / HHblits | X-ray | 2.85Å | 0.59 | 0.49 | Angiotensin-converting enzyme; Spike protein S1 |
7w8s.1 | 88.16 | hetero-1-1-mer | 0.52 | HHblits | EM | NA | 0.59 | 0.39 | Angiotensin-converting enzyme 2; Spike protein S1 |
7w8s.1 | 88.28 | hetero-1-1-mer | 0.52 | BLAST / HHblits | EM | NA | 0.59 | 0.39 | Angiotensin-converting enzyme 2; Spike protein S1 |
7dhx.1 | 89.21 | hetero-1-1-mer | 0.49 | BLAST | X-ray | 2.30Å | 0.59 | 0.39 | pangolin ACE2; Spike glycoprotein |
3d0g.1 | 92.35 | hetero-2-2-mer | 0.16 | BLAST / HHblits | X-ray | 2.80Å | 0.60 | 0.37 | Angiotensin-converting enzyme 2; Spike glycoprotein |
3d0g.1 | 92.33 | hetero-2-2-mer | 0.16 | HHblits | X-ray | 2.80Å | 0.60 | 0.37 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7dwx.1 | 99.90 | hetero-6-2-mer | 0.58 | HHblits | EM | NA | 0.62 | 1.00 | Angiotensin-converting enzyme 2; Spike glycoprotein |
7y75.1 | 98.44 | hetero-2-2-mer | 0.25 | HHblits | EM | NA | 0.62 | 0.49 | Angiotensin-converting enzyme 2; Spike protein S1 |
The table above shows the top 50 filtered templates. A further 227 templates were found which were considered to be less suitable for modelling than the filtered list.
2ajf.1, 3scj.1, 3sck.1, 6acg.1, 6cs2.1, 6lzg.1, 6m0j.1, 6m17.1, 6vw1.1, 7a91.1, 7a92.1, 7a94.1, 7a95.1, 7a96.1, 7a97.1, 7a98.1, 7bh9.1, 7c8d.1, 7c8j.1, 7ct5.1, 7ddp.1, 7df4.1, 7dhx.1, 7dmu.1, 7dmu.2, 7dqa.1, 7drv.2, 7dwx.1, 7dx4.1, 7dx5.1, 7dx6.1, 7dx7.1, 7dx8.1, 7dx9.1, 7e3j.1, 7edj.1, 7efp.1, 7efr.1, 7ekc.1, 7eke.1, 7ekf.1, 7ekg.1, 7ekh.1, 7f5r.1, 7f5r.2, 7f5r.3, 7fc5.1, 7fc6.1, 7fdg.1, 7fdh.1, 7fdi.1, 7fdk.1, 7fem.1, 7kj2.1, 7kj3.1, 7kj4.1, 7kmb.1, 7kms.1, 7kmz.1, 7knb.1, 7kne.1, 7knh.1, 7kni.1, 7l0n.1, 7l0n.2, 7lo4.1, 7mjm.1, 7mjn.1, 7nxc.1, 7p19.1, 7p19.2, 7p8i.1, 7p8i.2, 7pki.1, 7r0z.1, 7r10.1, 7r11.1, 7r12.1, 7r1a.1, 7rpv.1, 7rpv.2, 7rpv.3, 7rpv.4, 7sn0.1, 7sn0.2, 7sxx.1, 7sxy.1, 7sxz.1, 7sy0.1, 7sy1.1, 7sy2.1, 7sy3.1, 7sy4.1, 7sy5.1, 7sy6.1, 7sy7.1, 7sy8.1, 7t9k.1, 7t9l.1, 7tew.1, 7tex.1, 7tez.1, 7tf0.1, 7tn0.1, 7tn0.2, 7u0n.1, 7u0n.2, 7ufk.1, 7ufl.1, 7ufl.2, 7v7z.1, 7v80.1, 7v81.1, 7v82.1, 7v83.1, 7v84.1, 7v85.1, 7v86.1, 7v87.1, 7v88.1, 7v89.1, 7v8a.1, 7v8b.1, 7vib.1, 7vib.2, 7vx4.1, 7vx5.1, 7vx9.1, 7vxa.1, 7vxb.1, 7vxc.1, 7vxd.1, 7vxf.1, 7vxk.1, 7vxm.1, 7w6u.1, 7w8s.1, 7w98.1, 7w99.1, 7w9b.1, 7w9c.1, 7w9i.1, 7wa1.1, 7wbl.1, 7wbp.1, 7wbq.1, 7wbq.2, 7wgb.1, 7wgc.1, 7whh.1, 7wk4.1, 7wk5.1, 7wk6.1, 7wnm.1, 7wpa.1, 7wpb.1, 7wpc.1, 7wpo.1, 7wpz.1, 7wrh.1, 7wri.1, 7ws8.1, 7ws9.1, 7wsa.1, 7wse.1, 7wsf.1, 7wsg.1, 7wsh.1, 7wsk.1, 7wvp.1, 7wvq.1, 7xa7.1, 7xa7.2, 7xa7.3, 7xa7.4, 7xaz.1, 7xaz.2, 7xb0.1, 7xb1.1, 7xbf.2, 7xby.1, 7xch.1, 7xci.1, 7xcp.1, 7xid.1, 7xo4.1, 7xo5.1, 7xo6.1, 7xo7.1, 7xo8.1, 7xo9.1, 7xoa.1, 7xob.1, 7xoc.1, 7xwa.1, 7xwa.2, 7y76.1, 7y9z.1, 7ya0.1, 7ydi.1, 7yeg.1, 7yr2.1, 7yr3.1, 7zdq.1, 7zf7.1, 8aqs.1, 8aqt.1, 8aqu.1, 8aqv.1, 8aqw.1, 8df5.1, 8dlj.1, 8dlk.1, 8dlm.1, 8dln.1, 8dlp.1, 8dlq.1, 8dlu.1, 8dlv.1, 8dm5.1, 8dm6.1, 8dm7.1, 8dm8.1, 8dm9.1, 8dma.1, 8dv1.1, 8dv2.1