Export Alignment
Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

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NGL PV

### Spike glycoprotein / ACE2_HUMAN hetero-oligomeric complex | P0DTC2, Q9BYF1

### Created: May 5, 2023, 9:34 p.m. at 21:34

Order by:

Oligo-State
  Hetero-3-2-mer
GMQE
  0.74
QMEANDisCo Global:
  0.77 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7mjm.1 Processed angiotensin-converting enzyme 2, Spike glycoprotein

Seq Identity
  99.45%
Coverage

Biounit Oligo State | Hetero-pentamer
QSQE | -
Method | EM
Overall Seq Identity | 99.45%
Overall Seq Similarity | 0.62

Target | Seq Identity | Seq Similarity | Range | Coverage
--- | --- | --- | --- | ---
Processed angiotensin-converting enzyme 2 | 100.00% | 0.63 | DE: 19-614 | 0.74
Spike glycoprotein | 99.17% | 0.61 | ABC: 14-1147 | 0.95

Ligand | Added to Model | Description
--- | --- | ---
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

Model-Template Alignment
Toggle Identical (DE)

Toggle Identical (ABC)

Oligo-State
  Hetero-3-1-mer
GMQE
  0.72
QMEANDisCo Global:
  0.72 ± 0.05

Ligands
  10 x NAG, 4 x NAG-NAG
  10 x 2-acetamido-2-deoxy-beta-D-glucopyranose

  NAG.29: | 4 residues within 4Å: Chain B: N.122, N.125, V.127, K.129 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.122, B:K.129
  NAG.30: | 3 residues within 4Å: Chain B: T.108, N.234, T.236 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.234, B:T.236
  NAG.33: | 3 residues within 4Å: Chain B: F.342, N.343, L.368 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.342, B:L.368
  NAG.36: | 3 residues within 4Å: Chain B: H.655, V.656, N.657 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.657
  NAG.37: | 3 residues within 4Å: Chain B: N.709, I.1130, G.1131 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.1130 Hydrogen bonds: B:N.710
  NAG.38: | 4 residues within 4Å: Chain B: N.717, N.919, L.922, Q.1071 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.922
  NAG.45: | 3 residues within 4Å: Chain C: P.330, N.331, I.332 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:P.330, C:I.332 Hydrogen bonds: C:N.331
  NAG.48: | 4 residues within 4Å: Chain A: A.846, D.848, Chain C: N.616, T.618 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.616
  NAG.50: | 3 residues within 4Å: Chain C: N.709, I.1130, G.1131 No protein-ligand interaction detected (PLIP)
  NAG.52: | 3 residues within 4Å: Chain C: E.132, N.164, N.165 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.164, C:N.165

  4 x 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

  NAG-NAG.1: | 6 residues within 4Å: Chain A: N.234, Chain C: S.459, E.465, Y.473, Q.474, Ligand: NAG,NAG.1 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.459, C:Y.473, C:Q.474
  NAG-NAG.2: | 5 residues within 4Å: Chain A: N.717, L.922, Q.926, Q.1071, Ligand: NAG,NAG.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.922
  NAG-NAG.7: | 4 residues within 4Å: Chain B: N.1098, H.1101, F.1103, Ligand: NAG,NAG.7 No protein-ligand interaction detected (PLIP)
  NAG-NAG.13: | 4 residues within 4Å: Chain D: N.53, N.338, Q.340, Ligand: NAG,NAG.13 No protein-ligand interaction detected (PLIP)

QMEANDisCo Local
QMEAN Z-Scores

Template
7kj2.1 Angiotensin-converting enzyme 2, Spike glycoprotein

Seq Identity
  99.67%
Coverage

Biounit Oligo State | Hetero-tetramer
QSQE | -
Method | EM
Overall Seq Identity | 99.67%
Overall Seq Similarity | 0.62

Target | Seq Identity | Seq Similarity | Range | Coverage
--- | --- | --- | --- | ---
Angiotensin-converting enzyme 2 | 100.00% | 0.63 | D: 21-613 | 0.75
Spike glycoprotein | 99.50% | 0.61 | BAC: 27-1147 | 0.94

Ligand | Added to Model | Description
--- | --- | ---
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✓ | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG | ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

Model-Template Alignment

Toggle Identical (BAC)

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