|  | SWISS-MODEL Homology Modelling Report

## Model Building Report

This document lists the results for the homology modelling project "RNA-directed RNA polymerase nsp12 (Pol) | P0DTD1 PRO_0000449629" submitted to SWISS-MODEL workspace on May 5, 2023, 9:33 p.m..The submitted primary amino acid sequence is given in Table T1.

If you use any results in your research, please cite the relevant publications:

- Waterhouse, A., Bertoni, M., Bienert, S., Studer, G., Tauriello, G., Gumienny, R., Heer, F.T., de Beer, T.A.P., Rempfer, C., Bordoli, L., Lepore, R., Schwede, T. SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res. 46(W1), W296-W303 (2018).
- Bienert, S., Waterhouse, A., de Beer, T.A.P., Tauriello, G., Studer, G., Bordoli, L., Schwede, T. The SWISS-MODEL Repository - new features and functionality. Nucleic Acids Res. 45, D313-D319 (2017).
- Studer, G., Tauriello, G., Bienert, S., Biasini, M., Johner, N., Schwede, T. ProMod3 - A versatile homology modelling toolbox. PLOS Comp. Biol. 17(1), e1008667 (2021).
- Studer, G., Rempfer, C., Waterhouse, A.M., Gumienny, G., Haas, J., Schwede, T. QMEANDisCo - distance constraints applied on model quality estimation. Bioinformatics 36, 1765-1771 (2020).
- Bertoni, M., Kiefer, F., Biasini, M., Bordoli, L., Schwede, T. Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology. Scientific Reports 7 (2017).

## Results

The SWISS-MODEL template library (SMTL version 2023-05-05, PDB release 2023-04-28) was searched with for evolutionary related structures matching the target sequence in Table T1. For details on the template search, see Materials and Methods. Overall 349 templates were found (Table T2).

## Models

The following models were built (see Materials and Methods "Model Building"):

### Model #02 | File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global
--- | --- | --- | --- | --- | --- | ---
| PDB | ProMod3 3.3.0 | monomer | None | 0.88 | 0.87 ± 0.05

Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
6m71.1.A | 100.00 | monomer | 0.00 | HHblits | EM | - | 0.63 | 31 - 932 | 1.00 | RNA-directed RNA polymerase

### The template contained no ligands.

    Target    SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNY
    6m71.1.A  SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNY

    Target    QHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKK
    6m71.1.A  QHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKK

    Target    DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL
    6m71.1.A  DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL

    Target    LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTV
    6m71.1.A  LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTV

    Target    FPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA
    6m71.1.A  FPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA

    Target    LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
    6m71.1.A  LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF

    Target    DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV
    6m71.1.A  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV

    Target    SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLAR
    6m71.1.A  SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLAR

    Target    KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
    6m71.1.A  KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV

    Target    RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW
    6m71.1.A  RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW

    Target    TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADV
    6m71.1.A  TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADV

    Target    FHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
    6m71.1.A  FHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ

### Model #03 | File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global
--- | --- | --- | --- | --- | --- | ---
| PDB | ProMod3 3.3.0 | monomer | 1 x POP: PYROPHOSPHATE 2-; 2 x ZN: ZINC ION; | 0.86 | 0.86 ± 0.05

Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
7bv2.1.A | 100.00 | monomer | 0.00 | HHblits | EM | - | 0.63 | 31 - 929 | 1.00 | RNA-directed RNA polymerase

### Included Ligands

Ligand | Description
--- | ---
1 x POP | PYROPHOSPHATE 2-
2 x ZN | ZINC ION

### Excluded ligands

Ligand Name.Number | Reason for Exclusion | Description
--- | --- | ---
F86.6 | Binding site not conserved. | [(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate
MG.4 | Not in contact with model. | MAGNESIUM ION
MG.5 | Binding site not conserved. | MAGNESIUM ION

    Target    SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNY
    7bv2.1.A  SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNY

    Target    QHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKK
    7bv2.1.A  QHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKK

    Target    DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL
    7bv2.1.A  DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL

    Target    LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTV
    7bv2.1.A  LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTV

    Target    FPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA
    7bv2.1.A  FPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA

    Target    LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
    7bv2.1.A  LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF

    Target    DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV
    7bv2.1.A  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV

    Target    SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLAR
    7bv2.1.A  SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLAR

    Target    KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
    7bv2.1.A  KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV

    Target    RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW
    7bv2.1.A  RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW

    Target    TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADV
    7bv2.1.A  TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADV

    Target    FHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
    7bv2.1.A  FHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ

### Model #01 | File | Built with | Oligo-State | Ligands | GMQE | QMEANDisCo Global
--- | --- | --- | --- | --- | --- | ---
| PDB | ProMod3 3.3.0 | monomer | 2 x ZN: ZINC ION; | 0.85 | 0.89 ± 0.05

Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Range | Coverage | Description
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
6nur.1.A | 96.35 | monomer | 0.00 | HHblits | EM | - | 0.61 | 117 - 919 | 1.00 | NSP12

### Included Ligands

Ligand | Description
--- | ---
2 x ZN | ZINC ION

    Target    SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNY
    6nur.1.A  SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNLLDSYFVVKRHTMSNY

    Target    QHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKK
    6nur.1.A  QHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKK

    Target    DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL
    6nur.1.A  DWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL

    Target    LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTV
    6nur.1.A  LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTV

    Target    FPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA
    6nur.1.A  FPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA

    Target    LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
    6nur.1.A  LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF

    Target    DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV
    6nur.1.A  DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV

    Target    SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLAR
    6nur.1.A  SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLAR

    Target    KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
    6nur.1.A  KHNTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV

    Target    RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW
    6nur.1.A  RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAVLYYQNNVFMSEAKCW

    Target    TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADV
    6nur.1.A  TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADV

    Target    FHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
    6nur.1.A  FHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVL-

## Materials and Methods

## Template Search

Template search with has been performed against the SWISS-MODEL template library (SMTL, last update: 2023-05-05, last included PDB release: 2023-04-28).

## Model Building

Models are built based on the target-template alignment using ProMod3 (Studer et al.). Coordinates which are conserved between the target and the template are copied from the template to the model. Insertions and deletions are remodelled using a fragment library. Side chains are then rebuilt. Finally, the geometry of the resulting model is regularized by using a force field.

## Model Quality Estimation

The global and per-residue model quality has been assessed using the QMEAN scoring function (Studer et al.).

## Ligand Modelling

Ligands present in the template structure are transferred by homology to the model when the following criteria are met: (a) The ligands are annotated as biologically relevant in the template library, (b) the ligand is in contact with the model, (c) the ligand is not clashing with the protein, (d) the residues in contact with the ligand are conserved between the target and the template. If any of these four criteria is not satisfied, a certain ligand will not be included in the model. The model summary includes information on why and which ligand has not been included.

## Oligomeric State Conservation

The quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. The method (Bertoni et al.) is based on a supervised machine learning algorithm, Support Vector Machines (SVM), which combines interface conservation, structural clustering, and other template features to provide a quaternary structure quality estimate (QSQE). The QSQE score is a number between 0 and 1, reflecting the expected accuracy of the interchain contacts for a model built based a given alignment and template. Higher numbers indicate higher reliability. This complements the GMQE score which estimates the accuracy of the tertiary structure of the resulting model.

## References

- BLAST
  Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., Madden, T.L. BLAST+: architecture and applications. BMC Bioinformatics 10, 421-430 (2009).
- HHblits
  Steinegger, M., Meier, M., Mirdita, M., Vöhringer, H., Haunsberger, S. J., Söding, J. HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinformatics 20, 473 (2019).

## Table T1:

Primary amino acid sequence for which templates were searched and models were built.

SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD
FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG
IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN
CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA
LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK
SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV
TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW
TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ

## Table T2:

Template | Seq Identity | Oligo-state | QSQE | Found by | Method | Resolution | Seq Similarity | Coverage | Description
--- | --- | --- | --- | --- | --- | --- | --- | --- | ---
7re1.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
7rdz.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
7rdx.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
7krp.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
7re3.1.J | 100.00 | homo-dimer | 0.71 | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
7krn.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
7kro.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
7aap.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | Non-structural protein 12
6m71.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
7bv2.1.A | 100.00 | monomer | - | HHblits | EM | NA | 0.63 | 1.00 | RNA-directed RNA polymerase
6nur.1.A | 96.35 | monomer | - | HHblits | EM | NA | 0.61 | 1.00 | NSP12

The table above shows the top 11 filtered templates. A further 336 templates were found which were considered to be less suitable for modelling than the filtered list.
1csj.1.A, 1gx6.1.A, 1khv.1.A, 1khv.2.A, 1nb7.1.A, 1nb7.2.A, 1nhu.1.A, 1raj.1.A, 1rdr.1.A, 1s48.1.A, 1s4f.1.A, 1s4f.2.A, 1s4f.3.A, 1s4f.4.A, 1sh0.1.A, 1sh2.1.A, 1sh3.1.A, 1sh3.2.A, 1tp7.1.A, 1tp7.3.A, 1tql.1.A, 1wne.1.A, 1xr5.1.A, 1xr6.1.A, 1xr7.1.A, 1yuy.1.A, 1yvf.1.A, 1yvx.1.A, 2awz.1.A, 2b43.1.A, 2cjq.1.A, 2ckw.1.A, 2d3z.1.A, 2dxs.1.A, 2f8e.1.A, 2fvc.1.A, 2gc8.1.A, 2giq.1.A, 2hai.1.A, 2ijd.1.A, 2ijd.2.A, 2ijf.1.A, 2ily.1.A, 2j7w.1.A, 2jc0.1.A, 2o5d.1.A, 2qe2.1.A, 2qe5.1.A, 2uut.1.A, 2uuw.1.A, 2wcx.1.A, 2who.1.A, 2wk4.1.A, 2wk4.1.B, 2wrm.1.A, 2xhu.1.A, 2xhv.1.A, 2xhw.1.A, 2xi2.1.A, 2xwh.1.A, 2xxd.1.A, 2xym.1.A, 2zku.1.A, 3cdu.1.A, 3cwj.1.A, 3ddk.1.A, 3fql.1.A, 3frz.1.A, 3gnv.1.A, 3gol.2.A, 3gsz.1.A, 3h5s.1.A, 3h5x.1.A, 3hhk.1.A, 3hkw.1.A, 3i5k.1.A, 3klv.1.A, 3kmq.1.A, 3kms.1.A, 3kna.1.A, 3koa.1.A, 3lkh.2.A, 3mf5.1.A, 3n6l.1.A, 3n6m.1.A, 3nai.1.A, 3nai.2.A, 3nai.2.B, 3nky.1.A, 3nl0.1.A, 3nma.1.A, 3ol8.4.A, 3qgd.1.A, 3qge.2.A, 3qgg.1.A, 3qgi.1.A, 3qid.1.A, 3qid.2.A, 3qid.2.B, 3sfg.1.A, 3sfg.2.A, 3sfg.2.B, 3sfu.1.A, 3sfu.2.A, 3sfu.2.B, 3ske.1.A, 3u4r.1.A, 3upf.1.A, 3upf.2.A, 3upi.1.A, 3uqs.1.A, 3ur0.4.E, 3vqs.1.A, 3vqs.2.A, 3vws.1.A, 4adp.1.A, 4aep.1.A, 4c11.1.A, 4c11.1.B, 4dru.1.A, 4e76.1.A, 4eaw.1.A, 4eo6.1.A, 4gmc.1.A, 4gmc.2.A, 4hdg.1.A, 4hhj.1.A, 4ika.1.A, 4iqx.1.A, 4j0a.2.A, 4k4s.1.A, 4k4u.1.A, 4k4w.1.A, 4k4x.1.A, 4k50.2.A, 4k6m.1.A, 4kai.1.A, 4kb7.1.A, 4khm.1.A, 4khr.1.A, 4lq3.1.A, 4lq9.1.A, 4mtp.1.A, 4mz4.2.A, 4nld.1.A, 4nlo.1.A, 4nlp.1.A, 4nlq.1.A, 4nlr.1.A, 4nls.1.A, 4nlt.1.A, 4nlu.1.A, 4nlv.1.A, 4nlw.1.A, 4nlx.1.A, 4nly.1.A, 4nru.1.A, 4nyz.1.A, 4nz0.1.A, 4nz0.2.A, 4nz0.3.A, 4nz0.5.A, 4nz0.6.A, 4o4r.1.A, 4oow.1.A, 4oow.2.A, 4qpx.1.A, 4r0e.1.A, 4ry4.1.A, 4ry4.2.A, 4ry5.1.A, 4ry5.2.A, 4ry6.1.A, 4ry7.1.A, 4ry7.2.A, 4tlr.1.A, 4tn2.1.A, 4txs.1.A, 4ty8.2.A, 4ty9.1.A, 4v0r.1.A, 4wfx.1.A, 4wfy.1.A, 4wt9.1.A, 4wtc.1.A, 4wtk.1.A, 4wyl.1.A, 4wyw.1.A, 4wzm.1.A, 4wzq.1.A, 4x2b.1.A, 4y2a.1.A, 4y2c.1.A, 4y34.1.A, 4y3c.1.A, 4y3c.2.A, 4y3c.3.A, 4y3c.5.A, 4y3c.6.A, 4zp6.1.A, 4zp7.1.A, 4zp8.1.A, 4zp9.1.A, 4zpa.1.A, 4zpb.1.A, 4zpc.1.A, 4zpd.1.A, 5ccv.1.A, 5ccv.2.A, 5ccv.3.A, 5ccv.5.A, 5ccv.8.A, 5czb.1.A, 5dto.1.A, 5f8g.1.A, 5i61.1.A, 5i61.2.A, 5i62.1.A, 5iq6.1.A, 5jjs.1.A, 5jxs.1.A, 5k5m.1.A, 5n8x.1.A, 5n95.1.A, 5pzo.1.A, 5pzo.2.A, 5pzp.2.A, 5qj0.1.A, 5qj1.1.A, 5tfr.1.A, 5tmh.1.A, 5twm.1.A, 5u0b.1.A, 5u0c.1.A, 5u0c.3.A, 5u0c.4.A, 5uj2.1.A, 5w2e.1.A, 5xe0.1.A, 5y6r.1.A, 5y6z.1.A, 5yf5.1.A, 5yf6.1.A, 5yf7.1.A, 5yf8.1.A, 5ziu.1.A, 5zqk.1.A, 6ae4.1.A, 6ae5.1.A, 6ae7.1.A, 6gp9.1.A, 6gvv.1.A, 6gvy.1.A, 6iii.1.A, 6izx.1.A, 6izy.1.A, 6izz.1.A, 6j00.1.A, 6kr2.1.A, 6kr3.1.A, 6kwq.1.A, 6ld1.1.A, 6ld2.1.A, 6lse.1.A, 6lsg.1.A, 6mvk.1.A, 6mvo.1.A, 6mvp.1.A, 6mvq.1.A, 6qwt.1.A, 6r1i.1.A, 6r1i.2.A, 6s2l.1.A, 6ux2.1.B, 6wcz.1.B, 6xez.1.A, 6xqb.1.A, 6yyt.1.A, 7b3b.1.A, 7b3c.1.A, 7b3d.1.A, 7btf.1.A, 7bv1.1.A, 7bw4.1.A, 7bzf.1.A, 7c2k.1.A, 7ctt.1.A, 7cxm.1.A, 7cxn.1.A, 7cyq.1.A, 7d4f.1.D, 7d6n.1.A, 7dfg.1.C, 7dfh.1.A, 7diy.1.B, 7doi.1.A, 7dok.1.C, 7dte.1.A, 7ed5.1.A, 7egq.1.A, 7egq.1.I, 7eiz.1.A, 7ekj.1.A, 7f0s.1.A, 7l1f.1.A, 7mc5.1.A, 7mc6.1.A, 7oyg.1.A, 7oyg.1.F, 7ozu.1.A, 7ozv.1.A, 7rdy.1.A, 7re0.1.A, 7re2.1.A, 7re3.1.A, 7thm.1.A, 7uo4.1.A, 7uo7.1.A, 7uo9.1.A, 7uob.1.A, 7uoe.1.A, 7xd8.1.A, 7ziu.1.A, 7ziu.2.A, 8c1n.1.A, 8c1n.1.B, 8c2p.1.A, 8fm9.1.M, 8g6r.1.A, 8gwb.1.A, 8gwe.1.A, 8gwf.1.A, 8gwg.1.A, 8gwi.1.A, 8gwn.1.A, 8gwo.1.A