Non-structural protein 8 (nsp8) | P0DTD1 PRO_0000449626

Created: May 5, 2023, 9:34 p.m. at 21:34

Models Name Description GMQE QSQE Seq Id Coverage Range Method Resolution Oligo-state Ligands Found by Seq Similarity
8gwi.1.D
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.91 0.00 100.00 1.00 1-198 EM 0.00 monomer 8 x ZN, 1 x GTP HHblits 0.60
8gwg.1.D
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.91 0.00 100.00 1.00 1-198 EM 0.00 monomer 8 x ZN, 1 x GTP HHblits 0.60
8gwf.1.D
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.91 0.00 100.00 1.00 1-198 EM 0.00 monomer 8 x ZN, 1 x GTP HHblits 0.60
8gwe.1.D
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.91 0.00 100.00 1.00 1-198 EM 0.00 monomer 8 x ZN, 1 x GNP, 1 x MG, 1 x A-U-U-A HHblits 0.60
7bw4.1.D
Non-structural protein 8
Structure of the RNA-dependent RNA polymerase from SARS-CoV-2
 0.33 0.00 100.00 1.00 1-198 EM 0.00 monomer 2 x ZN HHblits 0.60
7cyq.1.B
Non-structural protein 8
Cryo-EM structure of an extended SARS-CoV-2 replication and transcription complex reveals an intermediate state in cap synthesis
 0.88 0.00 100.00 1.00 1-198 EM 0.00 monomer 8 x ZN, 1 x GDP, 1 x MG HHblits 0.60
7cxn.1.B
Non-structural protein 8
Architecture of a SARS-CoV-2 mini replication and transcription complex
 0.87 0.00 100.00 1.00 1-198 EM 0.00 monomer 8 x ZN, 1 x U-A-A-A-A-U HHblits 0.60
7cxm.1.B
Non-structural protein 8
Architecture of a SARS-CoV-2 mini replication and transcription complex
 0.89 0.00 100.00 1.00 1-198 EM 0.00 monomer 8 x ZN, 1 x U-A-A-A-A-U HHblits 0.60
7cyq.1.D
Non-structural protein 8
Cryo-EM structure of an extended SARS-CoV-2 replication and transcription complex reveals an intermediate state in cap synthesis
 0.88 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GDP, 1 x MG HHblits 0.60
6m5i.1.A
Non-structural protein 8
Crystal structure of 2019-nCoV nsp7-nsp8c complex
 0.55 100.00 1.00 1-198 X-ray 2.50 hetero-1-1-mer HHblits 0.60
7bzf.1.B
Non-structural protein 8
COVID-19 RNA-dependent RNA polymerase post-translocated catalytic complex
 0.52 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7cxn.1.D
Non-structural protein 8
Architecture of a SARS-CoV-2 mini replication and transcription complex
 0.88 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 1 x U-A-A-A-A-U HHblits 0.60
7cxm.1.D
Non-structural protein 8
Architecture of a SARS-CoV-2 mini replication and transcription complex
 0.88 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 1 x U-A-A-A-A-U HHblits 0.60
6m71.1.C
Non-structural protein 8
SARS-Cov-2 RNA-dependent RNA polymerase in complex with cofactors
 0.11 100.00 1.00 1-198 EM 0.00 hetero-1-1-2-mer HHblits 0.60
7btf.1.D
Non-structural protein 8
SARS-CoV-2 RNA-dependent RNA polymerase in complex with cofactors in reduced condition
 0.49 100.00 1.00 1-198 EM 0.00 hetero-1-1-2-mer 2 x ZN HHblits 0.60
7bw4.1.B
Non-structural protein 8
Structure of the RNA-dependent RNA polymerase from SARS-CoV-2
 0.53 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
✓
 6m71.1.D
Non-structural protein 8
SARS-Cov-2 RNA-dependent RNA polymerase in complex with cofactors
 0.52 0.00 100.00 1.00 1-198 EM 0.00 monomer HHblits 0.60
7btf.1.C
Non-structural protein 8
SARS-CoV-2 RNA-dependent RNA polymerase in complex with cofactors in reduced condition
 0.59 100.00 1.00 1-198 EM 0.00 hetero-1-1-2-mer 2 x ZN HHblits 0.60
7bzf.1.D
Non-structural protein 8
COVID-19 RNA-dependent RNA polymerase post-translocated catalytic complex
 0.45 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7egq.1.L
Non-structural protein 8
Co-transcriptional capping machineries in SARS-CoV-2 RTC: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with polymerase reveals mechanisms for capping and proofreading
 0.89 100.00 1.00 1-198 EM 0.00 hetero-2-4-2-4-2-2-… 26 x ZN, 3 x MG HHblits 0.60
7egq.1.D
Non-structural protein 8
Co-transcriptional capping machineries in SARS-CoV-2 RTC: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with polymerase reveals mechanisms for capping and proofreading
 0.91 100.00 1.00 1-198 EM 0.00 hetero-2-4-2-4-2-2-… 26 x ZN, 3 x MG HHblits 0.60
7egq.1.J
Non-structural protein 8
Co-transcriptional capping machineries in SARS-CoV-2 RTC: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with polymerase reveals mechanisms for capping and proofreading
 0.90 100.00 1.00 1-198 EM 0.00 hetero-2-4-2-4-2-2-… 26 x ZN, 3 x MG HHblits 0.60
7egq.1.B
Non-structural protein 8
Co-transcriptional capping machineries in SARS-CoV-2 RTC: Coupling of N7-methyltransferase and 3'-5' exoribonuclease with polymerase reveals mechanisms for capping and proofreading
 0.89 100.00 1.00 1-198 EM 0.00 hetero-2-4-2-4-2-2-… 26 x ZN, 3 x MG HHblits 0.60
7ctt.1.B
Non-structural protein 8
Cryo-EM structure of Favipiravir bound to replicating polymerase complex of SARS-CoV-2 in the pre-catalytic state.
 0.52 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 1 x MG, 1 x GE6 HHblits 0.60
7ctt.1.D
Non-structural protein 8
Cryo-EM structure of Favipiravir bound to replicating polymerase complex of SARS-CoV-2 in the pre-catalytic state.
 0.02 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 1 x MG, 1 x GE6 HHblits 0.60
7eiz.1.D
Non-structural protein 8
Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading
 0.88 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-1-1-1-… 13 x ZN, 1 x MG HHblits 0.60
7eiz.1.B
Non-structural protein 8
Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading
 0.88 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-1-1-1-… 13 x ZN, 1 x MG HHblits 0.60
7thm.1.D
Non-structural protein 8
SARS-CoV-2 nsp12/7/8 complex with a native N-terminus nsp9
 0.30 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-1-mer 2 x ZN, 1 x MN, 1 x POP HHblits 0.60
7thm.1.B
Non-structural protein 8
SARS-CoV-2 nsp12/7/8 complex with a native N-terminus nsp9
 0.50 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-1-mer 2 x ZN, 1 x MN, 1 x POP HHblits 0.60
8gwo.1.D
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.89 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GNP HHblits 0.60
8gwo.1.B
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.89 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GNP HHblits 0.60
8gwb.1.D
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 2 x MN, 1 x A-U HHblits 0.60
8gwb.1.B
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 2 x MN, 1 x A-U HHblits 0.60
8gwn.1.B
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.87 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GNP HHblits 0.60
7jlt.1.B
Non-structural protein 8
Crystal Structure of SARS-CoV-2 NSP7-NSP8 complex.
 0.57 100.00 1.00 1-198 X-ray 2.70 hetero-2-2-mer HHblits 0.60
✓
 7jlt.1.D
Non-structural protein 8
Crystal Structure of SARS-CoV-2 NSP7-NSP8 complex.
 0.58 0.00 100.00 1.00 1-198 X-ray 2.70 monomer HHblits 0.60
8gwi.1.B
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GTP HHblits 0.60
8gwg.1.B
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GTP HHblits 0.60
8gwf.1.B
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GTP HHblits 0.60
8gwe.1.B
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GNP, 1 x MG, 1 x A-U-U-A HHblits 0.60
8gwn.1.D
Non-structural protein 8
A mechanism for SARS-CoV-2 RNA capping and its inhibition by nucleotide analogue inhibitors
 0.86 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-1-mer 8 x ZN, 1 x GNP HHblits 0.60
7uoe.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to CTP, in a pre-catalytic state
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 2 x MG, 1 x CTP, 1 x L2B HHblits 0.60
7uo4.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to Remdesivir triphosphate, in a pre-catalytic state
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 1 x NWX, 1 x MG, 2 x ZN HHblits 0.60
7uo9.1.F
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to UTP, in a pre-catalytic state
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 1 x MG, 1 x UTP HHblits 0.60
7uo4.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to Remdesivir triphosphate, in a pre-catalytic state
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 1 x NWX, 1 x MG, 2 x ZN HHblits 0.60
7uoe.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to CTP, in a pre-catalytic state
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 2 x MG, 1 x CTP, 1 x L2B HHblits 0.60
7uo9.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to UTP, in a pre-catalytic state
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 1 x MG, 1 x UTP HHblits 0.60
7uo7.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to ATP, in a pre-catalytic state
 0.89 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 1 x ATP, 1 x MG, 2 x ZN HHblits 0.60
7uob.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to GTP, in a pre-catalytic state
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 3 x MG, 2 x GTP, 1 x L2B HHblits 0.60
7uo7.1.F
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to ATP, in a pre-catalytic state
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 1 x ATP, 1 x MG, 2 x ZN HHblits 0.60
7uob.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to GTP, in a pre-catalytic state
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 3 x MG, 2 x GTP, 1 x L2B HHblits 0.60
7aap.1.D
Non-structural protein 8
Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer dsRNA and favipiravir-RTP
 0.02 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 2 x MG, 1 x POP, 1 x GE6 HHblits 0.60
7aap.1.B
Non-structural protein 8
Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer dsRNA and favipiravir-RTP
 0.52 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 2 x MG, 1 x POP, 1 x GE6 HHblits 0.60
7krp.1.D
Non-structural protein 8
Structure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - BTC (local refinement)
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 1 x MG, 1 x ADP, 3 x 1N7 HHblits 0.60
7krn.1.D
Non-structural protein 8
Structure of SARS-CoV-2 backtracked complex bound to nsp13 helicase - nsp13(1)-BTC
 0.90 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-1-mer 5 x ZN, 2 x MG, 2 x ADP, 3 x 1N7, 1 x AF3 HHblits 0.60
7kro.1.D
Non-structural protein 8
Structure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - nsp13(2)-BTC
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
7re1.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC (composite)
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
6xez.1.B
Non-structural protein 8
Structure of SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC
 0.89 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
6xez.1.D
Non-structural protein 8
Structure of SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC
 0.89 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
7d4f.1.C
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase bound to suramin
 0.49 100.00 1.00 1-198 EM 0.00 hetero-2-1-1-mer 2 x ZN, 2 x H3U HHblits 0.60
7d4f.1.A
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase bound to suramin
 0.55 100.00 1.00 1-198 EM 0.00 hetero-2-1-1-mer 2 x ZN, 2 x H3U HHblits 0.60
7kro.1.B
Non-structural protein 8
Structure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - nsp13(2)-BTC
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
7dfg.1.D
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase bound to favipiravir
 0.57 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 1 x 1RP, 2 x ZN, 2 x POP, 4 x MG HHblits 0.60
7rdx.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - open class
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
7krn.1.B
Non-structural protein 8
Structure of SARS-CoV-2 backtracked complex bound to nsp13 helicase - nsp13(1)-BTC
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-1-mer 5 x ZN, 2 x MG, 2 x ADP, 3 x 1N7, 1 x AF3 HHblits 0.60
7krp.1.B
Non-structural protein 8
Structure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - BTC (local refinement)
 0.93 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 1 x MG, 1 x ADP, 3 x 1N7 HHblits 0.60
7dfg.1.F
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase bound to favipiravir
 0.50 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 1 x 1RP, 2 x ZN, 2 x POP, 4 x MG HHblits 0.60
7dfh.1.B
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase bound to ribavirin
 0.55 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 3 x MG, 2 x POP, 1 x RVP, 1 x G-C-U-A-U-G-U-G HHblits 0.60
7dfh.1.D
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase bound to ribavirin
 0.47 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 3 x MG, 2 x POP, 1 x RVP, 1 x G-C-U-A-U-G-U-G HHblits 0.60
7doi.1.B
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase bound to penciclovir.
 0.55 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 2 x POP, 4 x MG, 1 x HCU HHblits 0.60
7re3.1.G
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimer
 0.92 100.00 1.00 1-198 EM 0.00 hetero-2-4-2-4-mer 16 x ZN, 6 x MG, 6 x ADP, 4 x AF3, 2 x 1N7 HHblits 0.60
7dok.1.F
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase (extended conformation) bound to penciclovir
 0.87 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 1 x HCU, 4 x MG, 2 x ZN, 2 x POP HHblits 0.60
7doi.1.F
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase bound to penciclovir.
 0.47 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 2 x POP, 4 x MG, 1 x HCU HHblits 0.60
7dok.1.D
Non-structural protein 8
Structure of COVID-19 RNA-dependent RNA polymerase (extended conformation) bound to penciclovir
 0.81 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 1 x HCU, 4 x MG, 2 x ZN, 2 x POP HHblits 0.60
7re0.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - swiveled class
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 2 x AF3 HHblits 0.60
7re3.1.L
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimer
 0.89 100.00 1.00 1-198 EM 0.00 hetero-2-4-2-4-mer 16 x ZN, 6 x MG, 6 x ADP, 4 x AF3, 2 x 1N7 HHblits 0.60
7re3.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimer
 0.89 100.00 1.00 1-198 EM 0.00 hetero-2-4-2-4-mer 16 x ZN, 6 x MG, 6 x ADP, 4 x AF3, 2 x 1N7 HHblits 0.60
7rdx.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - open class
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
7re2.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(1)-RTC
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-1-mer 5 x ZN, 2 x MG, 2 x ADP, 3 x 1N7, 1 x AF3 HHblits 0.60
7re1.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC (composite)
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
7re0.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - swiveled class
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 2 x AF3 HHblits 0.60
7rdz.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - apo class
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 1 x MG, 1 x ADP HHblits 0.60
7re3.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimer
 0.92 100.00 1.00 1-198 EM 0.00 hetero-2-4-2-4-mer 16 x ZN, 6 x MG, 6 x ADP, 4 x AF3, 2 x 1N7 HHblits 0.60
7rdy.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - engaged class
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
7re2.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(1)-RTC
 0.93 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-1-mer 5 x ZN, 2 x MG, 2 x ADP, 3 x 1N7, 1 x AF3 HHblits 0.60
7rdy.1.B
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - engaged class
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 3 x MG, 3 x ADP, 3 x 1N7, 2 x AF3 HHblits 0.60
7rdz.1.D
Non-structural protein 8
SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - apo class
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-2-mer 8 x ZN, 1 x MG, 1 x ADP HHblits 0.60
7c2k.1.B
Non-structural protein 8
COVID-19 RNA-dependent RNA polymerase pre-translocated catalytic complex
 0.56 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7dte.1.B
Non-structural protein 8
SARS-CoV-2 RdRP catalytic complex with T33-1 RNA
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7c2k.1.D
Non-structural protein 8
COVID-19 RNA-dependent RNA polymerase pre-translocated catalytic complex
 0.71 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7dte.1.D
Non-structural protein 8
SARS-CoV-2 RdRP catalytic complex with T33-1 RNA
 0.91 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
6yyt.1.B
nsp8
Structure of replicating SARS-CoV-2 polymerase
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7oyg.1.B
SARS-CoV-2 nsp8
Dimeric form of SARS-CoV-2 RNA-dependent RNA polymerase
 0.32 100.00 1.00 1-198 EM 0.00 hetero-2-2-2-mer 4 x ZN HHblits 0.60
7oyg.1.G
SARS-CoV-2 nsp8
Dimeric form of SARS-CoV-2 RNA-dependent RNA polymerase
 0.32 100.00 1.00 1-198 EM 0.00 hetero-2-2-2-mer 4 x ZN HHblits 0.60
6yyt.1.D
nsp8
Structure of replicating SARS-CoV-2 polymerase
 0.92 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7b3d.1.B
SARS-CoV-2 nsp8
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with AMP at position -4 (structure 3)
 0.56 100.00 1.00 1-198 EM 0.00 hetero-1-1-1-mer 2 x ZN HHblits 0.60
7b3c.1.B
Non-structural protein 8
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -4 (structure 2)
 0.56 100.00 1.00 1-198 EM 0.00 hetero-1-1-1-mer 2 x ZN HHblits 0.60
7b3b.1.B
Non-structural protein 8
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -3 (structure 1)
 0.55 100.00 1.00 1-198 EM 0.00 hetero-1-1-1-mer 2 x ZN HHblits 0.60
6xqb.1.B
Non-structural protein 8
SARS-CoV-2 RdRp/RNA complex
 0.47 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 1 x MG, 1 x G-G-G-C-C-C-A, 1 x G-U-G-G-G-C-C-C HHblits 0.60
6xqb.1.D
Non-structural protein 8
SARS-CoV-2 RdRp/RNA complex
 0.03 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN, 1 x MG, 1 x G-G-G-C-C-C-A, 1 x G-U-G-G-G-C-C-C HHblits 0.60
7ozu.1.B
Non-structural protein 8
SARS-CoV-2 RdRp with Molnupiravir/ NHC in the template strand base-paired with A
 0.55 100.00 1.00 1-198 EM 0.00 hetero-1-1-1-mer 2 x ZN HHblits 0.60
7ozv.1.B
Non-structural protein 8
SARS-CoV-2 RdRp with Molnupiravir/ NHC in the template strand base-paired with G
 0.56 100.00 1.00 1-198 EM 0.00 hetero-1-1-1-mer 2 x ZN HHblits 0.60
7ed5.1.B
Non-structural protein 8
A dual mechanism of action of AT-527 against SARS-CoV-2 polymerase
 0.75 100.00 1.00 1-198 EM 2.98 hetero-1-2-1-mer 2 x ZN, 3 x MG, 3 x AT9 HHblits 0.60
7ed5.1.D
Non-structural protein 8
A dual mechanism of action of AT-527 against SARS-CoV-2 polymerase
 0.75 100.00 1.00 1-198 EM 2.98 hetero-1-2-1-mer 2 x ZN, 3 x MG, 3 x AT9 HHblits 0.60
7bv1.1.B
Non-structural protein 8
Cryo-EM structure of the apo nsp12-nsp7-nsp8 complex
 0.55 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7bv1.1.D
Non-structural protein 8
Cryo-EM structure of the apo nsp12-nsp7-nsp8 complex
 0.37 100.00 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.60
7bv2.1.B
Non-structural protein 8
The nsp12-nsp7-nsp8 complex bound to the template-primer RNA and triphosphate form of Remdesivir(RTP)
 0.54 100.00 1.00 1-198 EM 0.00 hetero-1-1-1-mer 2 x ZN, 1 x POP, 2 x MG, 1 x F86 HHblits 0.60
✓
 6nur.1.B
NSP8
SARS-Coronavirus NSP12 bound to NSP7 and NSP8 co-factors
 0.56 0.00 97.47 1.00 1-198 EM 0.00 monomer 2 x ZN HHblits 0.59
6nur.1.D
NSP8
SARS-Coronavirus NSP12 bound to NSP7 and NSP8 co-factors
 0.52 97.47 1.00 1-198 EM 0.00 hetero-1-2-1-mer 2 x ZN HHblits 0.59
✓
 2ahm.1.E
Replicase polyprotein 1ab, heavy chain
Crystal structure of SARS-CoV super complex of non-structural proteins: the hexadecamer
 0.76 0.54 97.47 1.00 1-198 X-ray 2.40 homo-octamer HHblits 0.59
2ahm.1.F
Replicase polyprotein 1ab, heavy chain
Crystal structure of SARS-CoV super complex of non-structural proteins: the hexadecamer
 0.72 97.47 1.00 1-198 X-ray 2.40 hetero-oligomer HHblits 0.59
2ahm.1.G
Replicase polyprotein 1ab, heavy chain
Crystal structure of SARS-CoV super complex of non-structural proteins: the hexadecamer
 0.93 97.47 1.00 1-198 X-ray 2.40 hetero-oligomer HHblits 0.59
✓
 2ahm.1.H
Replicase polyprotein 1ab, heavy chain
Crystal structure of SARS-CoV super complex of non-structural proteins: the hexadecamer
 0.93 0.60 97.47 1.00 1-198 X-ray 2.40 homo-octamer HHblits 0.59
3ub0.1.A
Non-structural protein 6, nsp6,
Crystal structure of the nonstructural protein 7 and 8 complex of Feline Coronavirus
 0.77 43.59 0.98 1-198 X-ray 2.60 hetero-oligomer HHblits 0.42
3ub0.2.A
Non-structural protein 6, nsp6,
Crystal structure of the nonstructural protein 7 and 8 complex of Feline Coronavirus
 0.78 43.59 0.98 1-198 X-ray 2.60 hetero-oligomer HHblits 0.42
3ub0.1.A
Non-structural protein 6, nsp6,
Crystal structure of the nonstructural protein 7 and 8 complex of Feline Coronavirus
 0.77 43.16 0.96 1-190 X-ray 2.60 hetero-oligomer BLAST 0.42
3ub0.2.A
Non-structural protein 6, nsp6,
Crystal structure of the nonstructural protein 7 and 8 complex of Feline Coronavirus
 0.78 43.16 0.96 1-190 X-ray 2.60 hetero-oligomer BLAST 0.42
5f22.1.B
Non-structural protein
C-terminal domain of SARS-CoV nsp8 complex with nsp7
 0.53 96.90 0.65 70-198 X-ray 2.15 hetero-oligomer HHblits 0.60
5f22.1.B
Non-structural protein
C-terminal domain of SARS-CoV nsp8 complex with nsp7
 0.53 96.90 0.65 70-198 X-ray 2.15 hetero-oligomer BLAST 0.60
6wtc.1.B
Non-structural protein 8
Crystal Structure of the Second Form of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2
 0.51 100.00 0.62 77-198 X-ray 1.85 hetero-2-2-mer HHblits 0.60
6xip.1.D
Non-structural protein 8
The 1.5 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2
 0.51 100.00 0.62 77-198 X-ray 1.50 hetero-2-2-mer HHblits 0.60
6wiq.1.B
Non-structural protein 8
Crystal structure of the co-factor complex of NSP7 and the C-terminal domain of NSP8 from SARS CoV-2
 0.51 100.00 0.62 77-198 X-ray 2.85 hetero-2-2-mer HHblits 0.60
6wiq.1.D
Non-structural protein 8
Crystal structure of the co-factor complex of NSP7 and the C-terminal domain of NSP8 from SARS CoV-2
 0.51 100.00 0.62 77-198 X-ray 2.85 hetero-2-2-mer HHblits 0.60
6wtc.1.D
Non-structural protein 8
Crystal Structure of the Second Form of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2
 0.52 100.00 0.62 77-198 X-ray 1.85 hetero-2-2-mer HHblits 0.60
6xip.1.B
Non-structural protein 8
The 1.5 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2
 0.51 100.00 0.62 77-198 X-ray 1.50 hetero-2-2-mer HHblits 0.60
7dcd.3.B
Non-structural protein 8
Nonstructural protein 7 and 8 complex of SARS-CoV-2
 0.49 100.00 0.62 77-198 X-ray 2.57 hetero-1-1-mer HHblits 0.60
7dcd.4.B
Non-structural protein 8
Nonstructural protein 7 and 8 complex of SARS-CoV-2
 0.49 100.00 0.62 77-198 X-ray 2.57 hetero-1-1-mer HHblits 0.60
7dcd.1.B
Non-structural protein 8
Nonstructural protein 7 and 8 complex of SARS-CoV-2
 0.50 100.00 0.62 77-198 X-ray 2.57 hetero-1-1-mer HHblits 0.60
7dcd.2.B
Non-structural protein 8
Nonstructural protein 7 and 8 complex of SARS-CoV-2
 0.49 100.00 0.62 77-198 X-ray 2.57 hetero-1-1-mer HHblits 0.60
6wqd.1.B
Non-structural protein 8
The 1.95 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS-CoV-2
 0.54 100.00 0.62 77-198 X-ray 1.95 hetero-2-2-mer HHblits 0.60
6wqd.1.D
Non-structural protein 8
The 1.95 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS-CoV-2
 0.50 100.00 0.62 77-198 X-ray 1.95 hetero-2-2-mer HHblits 0.60
6yhu.1.B
Replicase polyprotein 1a
Crystal structure of the nsp7-nsp8 complex of SARS-CoV-2
 0.50 100.00 0.59 76-192 X-ray 2.00 hetero-1-1-mer BLAST 0.61
6yhu.2.B
Replicase polyprotein 1a
Crystal structure of the nsp7-nsp8 complex of SARS-CoV-2
 0.49 100.00 0.59 76-192 X-ray 2.00 hetero-1-1-mer BLAST 0.61
6yhu.1.B
Replicase polyprotein 1a
Crystal structure of the nsp7-nsp8 complex of SARS-CoV-2
 0.50 100.00 0.59 76-191 X-ray 2.00 hetero-1-1-mer HHblits 0.61
6yhu.2.B
Replicase polyprotein 1a
Crystal structure of the nsp7-nsp8 complex of SARS-CoV-2
 0.49 100.00 0.59 76-191 X-ray 2.00 hetero-1-1-mer HHblits 0.61
7l1f.1.B
Non-structural protein 8
SARS-CoV-2 RdRp in complex with 4 Remdesivir monophosphate
 0.36 100.00 0.58 78-191 EM 0.00 hetero-1-1-1-mer HHblits 0.61
8g6r.1.B
nsp8
Porcine epidemic diarrhea virus core polymerase complex
 0.41 38.05 0.57 79-191 EM 0.00 hetero-1-1-1-mer 2 x ZN HHblits 0.40
8g6r.1.B
nsp8
Porcine epidemic diarrhea virus core polymerase complex
 0.40 38.39 0.57 79-190 EM 0.00 hetero-1-1-1-mer 2 x ZN BLAST 0.40
7ywr.1.A
ORF1a polyprotein
NMR structure of the N-terminal domain of Nsp8 from SARS-CoV-2
 0.19 100.00 0.42 1-84 NMR 0.00 monomer HHblits 0.59
5ica.1.B
Putative uncharacterized protein
Structure of the CTD complex of UTP12, Utp13, Utp1 and Utp21
 0.17 15.66 0.42 22-106 X-ray 3.51 hetero-oligomer HHblits 0.29
2pp6.1.A
Gifsy-2 prophage ATP-binding sugar transporter-like protein
Crystal structure of the ATP-binding sugar transporter-like protein from Salmonella typhimurium
 0.17 9.52 0.42 88-173 X-ray 2.70 homo-tetramer HHblits 0.24
2oto.1.A
M protein
N-terminal fragment of Streptococcus pyogenes M1 protein
 0.11 18.97 0.29 15-72 X-ray 3.04 homo-dimer HHblits 0.31
2oto.1.B
M protein
N-terminal fragment of Streptococcus pyogenes M1 protein
 0.11 18.97 0.29 15-72 X-ray 3.04 homo-dimer HHblits 0.31
2oto.2.A
M protein
N-terminal fragment of Streptococcus pyogenes M1 protein
 0.10 18.97 0.29 15-72 X-ray 3.04 homo-dimer HHblits 0.31
2oto.2.B
M protein
N-terminal fragment of Streptococcus pyogenes M1 protein
 0.11 18.97 0.29 15-72 X-ray 3.04 homo-dimer HHblits 0.31
6wdo.1.E
Calcium uniporter protein, mitochondrial
Cryo-EM structure of mitochondrial calcium uniporter holocomplex in high Ca2+
 0.10 10.42 0.24 32-80 EM 0.00 hetero-6-8-2-2-2-mer 2 x CA HHblits 0.30
6wdo.1.A
Calcium uniporter protein, mitochondrial
Cryo-EM structure of mitochondrial calcium uniporter holocomplex in high Ca2+
 0.10 10.42 0.24 32-80 EM 0.00 hetero-6-8-2-2-2-mer 2 x CA HHblits 0.30
6wdo.1.G
Calcium uniporter protein, mitochondrial
Cryo-EM structure of mitochondrial calcium uniporter holocomplex in high Ca2+
 0.10 10.42 0.24 32-80 EM 0.00 hetero-6-8-2-2-2-mer 2 x CA HHblits 0.30
4lqb.1.A
Uncharacterized protein
Crystal structure of uncharacterized protein Kfla3161
 0.06 8.70 0.23 126-173 X-ray 1.72 homo-dimer HHblits 0.24
4lqb.1.B
Uncharacterized protein
Crystal structure of uncharacterized protein Kfla3161
 0.06 8.70 0.23 126-173 X-ray 1.72 homo-dimer HHblits 0.24
1i8d.1.A
RIBOFLAVIN SYNTHASE
CRYSTAL STRUCTURE OF RIBOFLAVIN SYNTHASE
 0.05 9.09 0.22 118-161 X-ray 2.00 homo-trimer HHblits 0.25
1i8d.1.B
RIBOFLAVIN SYNTHASE
CRYSTAL STRUCTURE OF RIBOFLAVIN SYNTHASE
 0.04 9.09 0.22 118-161 X-ray 2.00 homo-trimer HHblits 0.25
1i8d.1.C
RIBOFLAVIN SYNTHASE
CRYSTAL STRUCTURE OF RIBOFLAVIN SYNTHASE
 0.03 9.09 0.22 118-161 X-ray 2.00 homo-trimer HHblits 0.25
3l4f.1.A
Rho guanine nucleotide exchange factor 7
Crystal Structure of betaPIX Coiled-Coil Domain and Shank PDZ Complex
 0.06 15.79 0.19 33-70 X-ray 2.80 hetero-3-1-mer HHblits 0.32
3l4f.1.B
Rho guanine nucleotide exchange factor 7
Crystal Structure of betaPIX Coiled-Coil Domain and Shank PDZ Complex
 0.06 15.79 0.19 33-70 X-ray 2.80 hetero-3-1-mer HHblits 0.32
3l4f.1.C
Rho guanine nucleotide exchange factor 7
Crystal Structure of betaPIX Coiled-Coil Domain and Shank PDZ Complex
 0.06 15.79 0.19 33-70 X-ray 2.80 hetero-3-1-mer HHblits 0.32
2w6b.1.A
RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 7
CRYSTAL STRUCTURE OF THE TRIMERIC BETA-PIX COILED-COIL DOMAIN
 0.06 13.51 0.19 33-69 X-ray 2.80 homo-trimer HHblits 0.31
6iqw.1.B
Csm2
Cryo-EM structure of Csm effector complex
 0.03 19.35 0.16 69-99 EM 0.00 hetero-1-1-2-1-1-mer 1 x ATP HHblits 0.28
6prk.1.A
RicF
X-ray Crystal Structure of Bacillus subtilis RicA in complex with RicF
 0.02 4.76 0.11 3-23 X-ray 3.20 hetero-2-2-mer HHblits 0.25
2la7.1.A
Uncharacterized protein
NMR structure of the protein YP_557733.1 from Burkholderia xenovorans
 0.00 15.00 0.10 150-169 NMR 0.00 monomer HHblits 0.29
4gco.1.A
Protein STI-1
Central domain of stress-induced protein-1 (STI-1) from C.elegans
 0.02 27.78 0.09 14-31 X-ray 1.60 monomer HHblits 0.34
3kd7.2.A
CTPR390
Designed TPR module (CTPR390) in complex with its peptide-ligand (Hsp90 peptide)
 0.02 22.22 0.09 14-31 X-ray 2.85 monomer 1 x ACE-MET-GLU-GLU-VAL-ASP HHblits 0.31
3kd7.1.A
CTPR390
Designed TPR module (CTPR390) in complex with its peptide-ligand (Hsp90 peptide)
 0.01 22.22 0.09 14-31 X-ray 2.85 monomer 1 x ACE-MET-GLU-GLU-VAL-ASP HHblits 0.31
1na0.1.A
designed protein CTPR3
Design of Stable alpha-Helical Arrays from an Idealized TPR Motif
 0.01 22.22 0.09 14-31 X-ray 1.60 monomer 2 x PB HHblits 0.31
2nc9.1.A
Stress-induced-phosphoprotein 1
Apo solution structure of Hop TPR2A
 0.01 16.67 0.09 15-32 NMR 0.00 monomer HHblits 0.30
6i57.1.A
Sperm-associated antigen 1
NMR structure of the third TPR domain of the human SPAG1 protein
 0.00 11.11 0.09 14-31 NMR 0.00 monomer HHblits 0.29
5hrz.1.A
TPR domain protein 1na0C3_3
Computationally Designed Trimer 1na0C3_3
 0.01 31.25 0.08 14-29 X-ray 2.15 homo-trimer HHblits 0.35
6y4l.1.A
ER membrane protein complex subunit 2
Crystal structure of human ER membrane protein complex subunits EMC2 and EMC9
 0.01 11.76 0.09 15-31 X-ray 2.20 hetero-1-1-mer HHblits 0.29
1p5q.1.A
FK506-binding protein 4
Crystal Structure of FKBP52 C-terminal Domain
 0.01 31.25 0.08 14-29 X-ray 2.80 homo-hexamer HHblits 0.34
1p5q.1.B
FK506-binding protein 4
Crystal Structure of FKBP52 C-terminal Domain
 0.02 31.25 0.08 14-29 X-ray 2.80 homo-hexamer HHblits 0.34
1p5q.1.C
FK506-binding protein 4
Crystal Structure of FKBP52 C-terminal Domain
 0.01 31.25 0.08 14-29 X-ray 2.80 homo-hexamer HHblits 0.34
6zbk.1.A
RNA polymerase II-associated protein 3
Crystal structure of the human complex between RPAP3 and TRBP
 0.01 11.76 0.09 14-30 X-ray 1.49 hetero-1-1-mer HHblits 0.28
7l7i.1.A
Peptidyl-prolyl cis-trans isomerase FKBP5
Cryo-EM structure of Hsp90:FKBP51:p23 closed-state complex
 0.01 20.00 0.08 14-28 EM 0.00 hetero-1-2-1-mer 2 x ANP HHblits 0.32