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NGL PV

### Non-structural protein 8 (nsp8) | P0DTD1 PRO_0000449626

### Created: May 5, 2023, 9:34 p.m. at 21:34

Order by:

Oligo-State
  Monomer
  (matching prediction)
GMQE
  0.85
QMEANDisCo Global:
  0.77 ± 0.06

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2ahm.1.H Replicase polyprotein 1ab, heavy chain
Crystal structure of SARS-CoV super complex of non-structural proteins: the hexadecamer

Seq Identity
  97.47%
Coverage

Biounit Oligo State | Hetero-16-mer
QSQE | 0.60
Method | X-ray, 2.40 Å
Seq Similarity | 0.59
Coverage | 1.00
Range | 2-192

Ligand | Added to Model | Description
--- | --- | ---
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION

Model-Template Alignment

Oligo-State
  Monomer
  (matching prediction)
GMQE
  0.64
QMEANDisCo Global:
  0.70 ± 0.07

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2ahm.1.E Replicase polyprotein 1ab, heavy chain
Crystal structure of SARS-CoV super complex of non-structural proteins: the hexadecamer

Seq Identity
  97.47%
Coverage

Biounit Oligo State | Hetero-16-mer
QSQE | 0.54
Method | X-ray, 2.40 Å
Seq Similarity | 0.59
Coverage | 1.00
Range | 38-192

Ligand | Added to Model | Description
--- | --- | ---
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.55
QMEANDisCo Global:
  0.76 ± 0.08

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7jlt.1.D Non-structural protein 8
Crystal Structure of SARS-CoV-2 NSP7-NSP8 complex.

Seq Identity
  100.00%
Coverage

Biounit Oligo State | Hetero-tetramer
QSQE | 0.00
Method | X-ray, 2.70 Å
Seq Similarity | 0.60
Coverage | 1.00
Range | 77-193

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.53
QMEANDisCo Global:
  0.76 ± 0.08

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6nur.1.B NSP8
SARS-Coronavirus NSP12 bound to NSP7 and NSP8 co-factors

Seq Identity
  97.47%
Coverage

Biounit Oligo State | Hetero-tetramer
QSQE | 0.00
Method | EM
Seq Similarity | 0.59
Coverage | 1.00
Range | 77-191

Ligand | Added to Model | Description
--- | --- | ---
ZN | ✕ - Binding site not conserved. | ZINC ION
ZN | ✕ - Binding site not conserved. | ZINC ION

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.51
QMEANDisCo Global:
  0.70 ± 0.08

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6m71.1.D Non-structural protein 8
SARS-Cov-2 RNA-dependent RNA polymerase in complex with cofactors

Seq Identity
  100.00%
Coverage

Biounit Oligo State | Hetero-tetramer
QSQE | 0.00
Method | EM
Seq Similarity | 0.60
Coverage | 1.00
Range | 78-191

Model-Template Alignment

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