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SWISS-MODEL
Helicase nsp13 (Hel) | P0DTD1 PRO_0000449630
Created: May 5, 2023, 9:34 p.m. at 21:34
Templates (top 1000)
All templates
Models
Order by:
GMQE
QMEANDisCo
Oligo State
Ligands
Seq Identity
Similarity
Coverage
Model 01
PDB Format
(Display)
JSON Format
(Display)
Model Report
(Display)
Oligo-State
Monomer
GMQE
0.90
QMEANDisCo Global:
0.86
± 0.05
Ligands
3 x
ZN
3 x ZINC ION
ZN.1:
4 residues within 4Å:
Chain A:
C.50
,
C.55
,
C.72
,
H.75
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.50
,
A:C.55
,
A:C.72
,
A:H.75
ZN.2:
4 residues within 4Å:
Chain A:
C.16
,
C.19
,
H.33
,
H.39
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.16
,
A:C.19
,
A:H.33
,
A:H.39
ZN.3:
5 residues within 4Å:
Chain A:
C.5
,
C.8
,
C.26
,
K.28
,
C.29
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.5
,
A:C.8
,
A:C.26
,
A:C.29
QMEANDisCo Local
QMEAN Z-Scores
Template
5rlc.1.A
Helicase
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 helicase in complex with Z56923284
Seq Identity
100.00%
Coverage
Biounit Oligo State
Monomer
QSQE
0.00
Method
X-ray, 1.92 Å
Seq Similarity
0.62
Coverage
1.00
Range
1-592
Ligand
Added to Model
Description
ZN
✓
ZINC ION
ZN
✓
ZINC ION
ZN
✓
ZINC ION
PO4
✕ - Not biologically relevant.
PHOSPHATE ION
PO4
✕ - Not biologically relevant.
PHOSPHATE ION
Model-Template Alignment
Model 02
PDB Format
(Display)
JSON Format
(Display)
Model Report
(Display)
Oligo-State
Monomer
GMQE
0.85
QMEANDisCo Global:
0.81
± 0.05
Ligands
3 x
ZN
3 x ZINC ION
ZN.1:
4 residues within 4Å:
Chain A:
C.5
,
C.8
,
C.26
,
C.29
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.5
,
A:C.8
,
A:C.26
,
A:C.29
ZN.2:
4 residues within 4Å:
Chain A:
C.16
,
C.19
,
H.33
,
H.39
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.16
,
A:C.19
,
A:H.33
,
A:H.39
ZN.3:
4 residues within 4Å:
Chain A:
C.50
,
C.55
,
C.72
,
H.75
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:C.50
,
A:C.55
,
A:H.75
QMEANDisCo Local
QMEAN Z-Scores
Template
5wwp.1.A
ORF1ab
Crystal structure of Middle East respiratory syndrome coronavirus helicase (MERS-CoV nsp13)
Seq Identity
71.60%
Coverage
Biounit Oligo State
Monomer
QSQE
0.00
Method
X-ray, 3.00 Å
Seq Similarity
0.53
Coverage
0.99
Range
1-595
Ligand
Added to Model
Description
ZN
✓
ZINC ION
ZN
✓
ZINC ION
ZN
✓
ZINC ION
SO4
✕ - Not biologically relevant.
SULFATE ION
Model-Template Alignment
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