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Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

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NGL PV

### Nucleoprotein (N) | P0DTC9

### Created: May 5, 2023, 9:34 p.m. at 21:34

Order by:

Oligo-State
  Monomer
GMQE
  0.23
QMEANDisCo Global:
  0.68 ± 0.07

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
4ud1.1.A N PROTEIN
Structure of the N Terminal domain of the MERS CoV nucleocapsid

Seq Identity
  55.41%
Coverage

Biounit Oligo State | Monomer
QSQE | 0.00
Method | X-ray, 2.48 Å
Seq Similarity | 0.47
Coverage | 0.37
Range | 40-174

Ligand | Added to Model | Description
--- | --- | ---
NH4 | ✕ - Not biologically relevant. | AMMONIUM ION

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.21
QMEANDisCo Global:
  0.74 ± 0.07

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2ofz.1.A Nucleocapsid protein
Ultrahigh Resolution Crystal Structure of RNA Binding Domain of SARS Nucleopcapsid (N Protein) at 1.1 Angstrom Resolution in Monoclinic Form.

Seq Identity
  92.06%
Coverage

Biounit Oligo State | Monomer
QSQE | 0.00
Method | X-ray, 1.17 Å
Seq Similarity | 0.61
Coverage | 0.30
Range | 48-173

Ligand | Added to Model | Description
--- | --- | ---
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL

Model-Template Alignment

Oligo-State
  Monomer
  (matching prediction)
GMQE
  0.18
QMEANDisCo Global:
  0.60 ± 0.08

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6wzq.2.B Nucleoprotein
Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P21 form

Seq Identity
  100.00%
Coverage

Biounit Oligo State | Homo-dimer
QSQE | 0.49
Method | X-ray, 1.45 Å
Seq Similarity | 0.62
Coverage | 0.28
Range | 250-364

Ligand | Added to Model | Description
--- | --- | ---
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not in contact with model. | SULFATE ION

Model-Template Alignment

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