Non-structural protein 2 (nsp2) | P0DTD1 PRO_0000449620

Created: May 5, 2023, 9:33 p.m. at 21:33

Models Name Description GMQE QSQE Seq Id Coverage Range Method Resolution Oligo-state Ligands Found by Seq Similarity
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 7msw.1.A
Non-structural protein 2
Full length SARS-CoV-2 Nsp2
 0.97 0.00 100.00 1.00 1-638 EM 0.00 monomer 3 x ZN HHblits 0.62
7msx.1.A
Non-structural protein 2
SARS-CoV-2 Nsp2
 0.81 0.00 100.00 1.00 1-638 EM 0.00 monomer 3 x ZN HHblits 0.62
7fac.1.A
Non-structural protein 2
Crystal Structure of C-terminus of the non-structural protein 2 from SARS coronavirus
 0.76 0.00 65.09 0.83 112-638 X-ray 2.71 monomer 2 x ZN BLAST 0.51
7fac.1.A
Non-structural protein 2
Crystal Structure of C-terminus of the non-structural protein 2 from SARS coronavirus
 0.76 0.00 65.02 0.82 112-638 X-ray 2.71 monomer 2 x ZN HHblits 0.50
7exm.3.A
Non-structural protein 2
The N-terminal crystal structure of SARS-CoV-2 NSP2
 0.38 0.00 100.00 0.43 1-276 X-ray 1.96 monomer 3 x ZN BLAST 0.64
7exm.2.A
Non-structural protein 2
The N-terminal crystal structure of SARS-CoV-2 NSP2
 0.37 0.00 100.00 0.43 1-276 X-ray 1.96 monomer 3 x ZN BLAST 0.64
7exm.1.A
Non-structural protein 2
The N-terminal crystal structure of SARS-CoV-2 NSP2
 0.36 0.00 100.00 0.43 1-276 X-ray 1.96 monomer 3 x ZN BLAST 0.64
7exm.3.A
Non-structural protein 2
The N-terminal crystal structure of SARS-CoV-2 NSP2
 0.37 0.00 100.00 0.43 2-275 X-ray 1.96 monomer 3 x ZN HHblits 0.64
7exm.4.A
Non-structural protein 2
The N-terminal crystal structure of SARS-CoV-2 NSP2
 0.36 0.00 100.00 0.43 2-275 X-ray 1.96 monomer 3 x ZN HHblits 0.64
7exm.2.A
Non-structural protein 2
The N-terminal crystal structure of SARS-CoV-2 NSP2
 0.37 0.00 100.00 0.43 2-275 X-ray 1.96 monomer 3 x ZN HHblits 0.64
7exm.1.A
Non-structural protein 2
The N-terminal crystal structure of SARS-CoV-2 NSP2
 0.36 100.00 0.43 2-275 X-ray 1.96 monomer 3 x ZN HHblits 0.64
7f52.1.A
Non-structural protein 2
Crystal Structure of IBV Nsp2
 0.11 11.94 0.70 54-627 X-ray 2.56 homo-dimer HHblits 0.25
7f52.1.B
Non-structural protein 2
Crystal Structure of IBV Nsp2
 0.11 11.94 0.70 54-627 X-ray 2.56 homo-dimer HHblits 0.25
7fa1.1.A
Non-structural protein 2
Crystal Structure of N-terminus of the non-structural protein 2 from SARS coronavirus
 0.34 0.00 76.45 0.43 1-276 X-ray 1.60 monomer 3 x ZN BLAST 0.55
7fa1.1.A
Non-structural protein 2
Crystal Structure of N-terminus of the non-structural protein 2 from SARS coronavirus
 0.34 0.00 76.36 0.43 2-276 X-ray 1.60 monomer 3 x ZN HHblits 0.55
5it7.76.A
Ubiquitin-40S ribosomal protein S27a
Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2
 0.01 15.00 0.09 105-169 EM 0.00 monomer HHblits 0.27
6gsn.1.O
Ubiquitin-40S ribosomal protein S27a
Structure of a partial yeast 48S preinitiation complex in closed conformation
 0.00 15.00 0.09 105-169 EM 0.00 hetero-1-1-1-1-1-1-… 11 x MG, 4 x ZN, 1 x GCP, 1 x MET HHblits 0.27
6gsm.1.7
Ubiquitin-40S ribosomal protein S27a
Structure of a partial yeast 48S preinitiation complex in open conformation.
 0.00 15.00 0.09 105-169 EM 5.20 hetero-1-1-1-1-1-1-… 1 x 7NO, 12 x MG, 4 x ZN, 1 x GCP, 1 x A-A-U HHblits 0.27
6tnu.31.A
Ubiquitin-40S ribosomal protein S31
Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
 0.00 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
6i7o.107.A
Ubiquitin-40S ribosomal protein S31
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
 0.00 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
6t4q.30.A
Ubiquitin-40S ribosomal protein S31
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
 0.00 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
6i7o.46.A
Ubiquitin-40S ribosomal protein S31
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
 0.00 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
6tb3.31.A
Ubiquitin-40S ribosomal protein S31
yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
 0.00 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
6zvi.1.6
RPS31 isoform 1
Mbf1-ribosome complex
 0.00 0.00 18.33 0.09 105-167 EM 0.00 monomer 2 x ZN HHblits 0.26
7b7d.31.A
Ubiquitin-40S ribosomal protein S31
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
 0.00 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
7nrd.14.A
Ubiquitin-40S ribosomal protein S31
Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
 0.00 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
5mei.117.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of Agelastatin A bound to the 80S ribosome
 0.01 18.33 0.09 105-167 X-ray 3.50 monomer HHblits 0.26
5m1j.34.A
Ubiquitin-40S ribosomal protein S31
Nonstop ribosomal complex bound with Dom34 and Hbs1
 0.00 18.33 0.09 105-167 EM 3.30 monomer HHblits 0.26
6wdr.1.2
Ubiquitin-40S ribosomal protein S31
Subunit joining exposes nascent pre-40S rRNA for processing and quality control
 0.00 18.33 0.09 105-167 EM 3.70 hetero-1-1-1-1-1-1-… HHblits 0.26
5obm.73.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of Gentamicin bound to the yeast 80S ribosome
 0.01 18.33 0.09 105-167 X-ray 3.40 monomer HHblits 0.26
5obm.151.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of Gentamicin bound to the yeast 80S ribosome
 0.01 18.33 0.09 105-167 X-ray 3.40 monomer HHblits 0.26
5ndw.43.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
 0.01 18.33 0.09 105-167 X-ray 3.70 monomer HHblits 0.26
5ndw.44.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
 0.01 18.33 0.09 105-167 X-ray 3.70 monomer HHblits 0.26
6t7t.33.A
Ubiquitin-40S ribosomal protein S31
Structure of yeast 80S ribosome stalled on poly(A) tract.
 0.01 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
7a1g.1.5
Ubiquitin-40S ribosomal protein S31
Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex
 0.01 18.33 0.09 105-167 EM 0.00 hetero-1-1-1-1-1-1-… 10 x MG, 2 x ZN, 2 x SF4, 1 x ADP HHblits 0.26
7zrs.32.A
RPS31 isoform 1
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
7zuw.32.A
RPS31 isoform 1
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae
 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
7zpq.32.A
RPS31 isoform 1
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
7zux.32.A
Ubiquitin
Collided ribosome in a disome unit from S. cerevisiae
 0.00 18.33 0.09 105-167 EM 0.00 monomer HHblits 0.26
4u3n.107.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome
 0.01 18.33 0.09 105-167 X-ray 3.20 monomer HHblits 0.26
4u4o.32.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of Geneticin bound to the yeast 80S ribosome
 0.01 18.33 0.09 105-167 X-ray 3.60 monomer HHblits 0.26
5dc3.32.A
Ubiquitin-40S ribosomal protein S31
Complex of yeast 80S ribosome with non-modified eIF5A
 0.01 18.33 0.09 105-167 X-ray 3.25 monomer HHblits 0.26
3jag.76.A
eS31
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
 0.01 19.30 0.09 105-166 EM 0.00 monomer HHblits 0.30
5lyb.32.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
 0.01 18.97 0.09 106-166 X-ray 3.25 monomer HHblits 0.27
5tga.107.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
 0.01 18.97 0.09 106-166 X-ray 3.30 monomer HHblits 0.27
4u56.32.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of Blasticidin S bound to the yeast 80S ribosome
 0.01 18.97 0.09 106-166 X-ray 3.45 monomer HHblits 0.27
4u4o.107.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of Geneticin bound to the yeast 80S ribosome
 0.01 18.97 0.09 106-166 X-ray 3.60 monomer HHblits 0.27
4u4y.107.A
Ubiquitin-40S ribosomal protein S31
Crystal structure of Pactamycin bound to the yeast 80S ribosome
 0.01 18.97 0.09 106-166 X-ray 3.20 monomer HHblits 0.27
5dat.107.A
Ubiquitin-40S ribosomal protein S31
Complex of yeast 80S ribosome with hypusine-containing eIF5A
 0.01 18.97 0.09 106-166 X-ray 3.15 monomer HHblits 0.27
5dat.32.A
Ubiquitin-40S ribosomal protein S31
Complex of yeast 80S ribosome with hypusine-containing eIF5A
 0.01 18.97 0.09 106-166 X-ray 3.15 monomer HHblits 0.27
7zw0.32.A
40S ribosomal protein S31
FAP-80S Complex - Rotated state
 0.00 18.97 0.09 106-166 EM 0.00 monomer HHblits 0.27
7tql.1.9
40S ribosomal protein S27a
CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.
 0.01 17.86 0.09 105-165 EM 3.20 hetero-1-1-2-1-1-1-… 1 x GNP, 3 x ZN HHblits 0.29
5jbh.1.K
30S ribosomal protein eS27
Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
 0.00 15.56 0.07 118-168 EM 0.00 hetero-1-1-1-1-1-1-… 1 x MET, 1 x MG, 1 x GNP HHblits 0.29
4v4n.35.A
30S ribosomal protein S27AE
Structure of the Methanococcus jannaschii ribosome-SecYEBeta channel complex
 0.00 15.56 0.07 118-168 EM 0.00 monomer HHblits 0.29
6zvj.1.7
Ubiquitin-40S ribosomal protein S27a
Structure of a human ABCE1-bound 43S pre-initiation complex - State II
 0.00 14.63 0.06 120-165 EM 0.00 hetero-1-1-1-1-1-1-… 3 x ZN, 2 x SF4, 1 x ADP, 2 x MG, 1 x ATP HHblits 0.29
7nrc.79.A
GCN1
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
 0.00 19.44 0.06 290-325 EM 0.00 monomer HHblits 0.29
1xjh.1.A
33 kDa chaperonin
NMR structure of the redox switch domain of the E. coli Hsp33
 0.00 15.63 0.05 301-332 NMR 0.00 monomer 1 x ZN HHblits 0.29