Host translation inhibitor nsp1 | P0DTD1 PRO_0000449619

Created: May 5, 2023, 9:33 p.m. at 21:33

Models Name Description GMQE QSQE Seq Id Coverage Range Method Resolution Oligo-state Ligands Found by Seq Similarity
6zlw.1.9
Non-structural protein 1
SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit
 0.06 0.00 100.00 1.00 1-180 EM 0.00 monomer 3 x ZN HHblits 0.61
6zon.1.l
Host translation inhibitor Nsp1
SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
 0.04 0.00 100.00 1.00 1-180 EM 0.00 monomer 3 x ZN HHblits 0.61
6zn5.1.8
Non-structural protein 1
SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
 0.03 0.00 100.00 1.00 1-180 EM 0.00 monomer 3 x ZN HHblits 0.61
6zm7.81.A
Non-structural protein 1
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
 0.04 0.00 100.00 1.00 1-180 EM 0.00 monomer HHblits 0.61
6zp4.1.r
Non-structural protein 1
SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2
 0.07 0.00 100.00 1.00 1-180 EM 0.00 monomer 4 x ZN, 1 x GTP, 1 x MG HHblits 0.61
6zmt.1.7
Non-structural protein 1
SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex
 0.05 0.00 100.00 1.00 1-180 EM 0.00 monomer 2 x ZN HHblits 0.61
6zok.1.U
Non-structural protein 1
SARS-CoV-2-Nsp1-40S complex, focused on body
 0.07 0.00 100.00 1.00 1-180 EM 0.00 monomer 12 x MG, 1 x ZN HHblits 0.61
✓
 6zoj.1.8
Non-structural protein 1
SARS-CoV-2-Nsp1-40S complex, composite map
 0.06 0.00 100.00 1.00 1-180 EM 0.00 monomer 23 x MG, 3 x ZN HHblits 0.61
7k5i.1.9
Host translation inhibitor nsp1
SARS-COV-2 nsp1 in complex with human 40S ribosome
 0.05 100.00 1.00 1-180 EM 0.00 hetero-1-1-1-1-1-1-… 1 x MG, 3 x ZN HHblits 0.61
6zme.81.A
Non-structural protein 1
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
 0.06 100.00 1.00 1-180 EM 0.00 monomer HHblits 0.61
6zmi.81.A
Non-structural protein 1
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
 0.09 100.00 1.00 1-180 EM 0.00 monomer HHblits 0.61
6zmo.82.A
Non-structural protein 1
SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
 0.07 100.00 1.00 1-180 EM 0.00 monomer HHblits 0.61
7k3n.1.A
Host translation inhibitor nsp1
Crystal Structure of NSP1 from SARS-CoV-2
 0.61 100.00 1.00 1-180 X-ray 1.65 monomer HHblits 0.61
8aou.1.A
Host translation inhibitor nsp1
Solution NMR structure of full-length Nsp1 from SARS-CoV-2.
 0.94 100.00 1.00 1-180 NMR 0.00 monomer HHblits 0.61
✓
 7k7p.1.A
Host translation inhibitor nsp1
Structure of SARS-CoV-2 nonstuctural protein 1
 0.56 0.00 100.00 0.66 10-127 X-ray 1.77 monomer HHblits 0.61
8asq.1.A
Host translation inhibitor nsp1
SARS-CoV-2 non-structural protein-1 (nsp1) in complex with N-methyl-1-(4-(thiophen-2-yl)phenyl)methanamine
 0.55 100.00 0.65 10-126 X-ray 1.15 monomer 1 x NT9 HHblits 0.60
8ays.1.A
Host translation inhibitor nsp1
SARS-CoV-2 non-structural protein-1 (nsp1) in complex with 4-(2-aminothiazol-4-yl)phenol
 0.55 100.00 0.65 10-126 X-ray 1.37 monomer 1 x 92G HHblits 0.60
8az9.1.A
Host translation inhibitor nsp1
SARS-CoV-2 non-structural protein-1 (nsp1) in complex with 1-(2-(3-chlorophenyl)thiazol-4-yl)-N-methylmethanamine
 0.55 100.00 0.65 10-126 X-ray 1.42 monomer 1 x OF6 HHblits 0.60
8a55.1.A
Host translation inhibitor nsp1
Structure of N-terminal SARS-CoV-2 nonstructural protein 1 (nsp1) at atomic resolution
 0.54 100.00 0.65 10-126 X-ray 0.99 monomer HHblits 0.60
8ayw.1.A
Host translation inhibitor nsp1
SARS-CoV-2 non-structural protein-1 (nsp1) in complex with (S)-1-(4-chlorophenyl)ethan-1-amine
 0.54 100.00 0.65 10-126 X-ray 1.10 monomer 1 x OG3 HHblits 0.60
8az8.1.A
Host translation inhibitor nsp1
SARS-CoV-2 non-structural protein-1 (nsp1) in complex with 2-(benzylamino)ethan-1-ol
 0.54 100.00 0.65 10-126 X-ray 1.18 monomer 1 x OEI HHblits 0.60
8a4y.1.A
Host translation inhibitor nsp1
SARS-CoV-2 non-structural protein-1 (nsp1) in complex with N-(2,3-dihydro-1H-inden-5-yl)acetamide
 0.55 100.00 0.65 10-126 X-ray 1.10 monomer 1 x QO6 HHblits 0.60
7eq4.1.A
Host translation inhibitor nsp1
Crystal Structure of the N-terminus of Nonstructural protein 1 from SARS-CoV-2
 0.54 100.00 0.64 11-125 X-ray 1.25 monomer HHblits 0.60
7eq4.1.A
Host translation inhibitor nsp1
Crystal Structure of the N-terminus of Nonstructural protein 1 from SARS-CoV-2
 0.54 100.00 0.64 11-125 X-ray 1.25 monomer BLAST 0.60
7opl.1.E
Non-structural protein 1
CryoEM structure of DNA Polymerase alpha - primase bound to SARS CoV nsp1
 0.40 0.00 86.09 0.64 13-127 EM 0.00 monomer 3 x ZN, 1 x SF4 BLAST 0.56
2gdt.1.A
Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
NMR Structure of the nonstructural protein 1 (nsp1) from the SARS coronavirus
 0.46 0.00 86.09 0.64 13-127 NMR 0.00 monomer BLAST 0.56
2gdt.1.A
Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
NMR Structure of the nonstructural protein 1 (nsp1) from the SARS coronavirus
 0.43 0.00 83.33 0.63 12-127 NMR 0.00 monomer HHblits 0.55
7opl.1.E
Non-structural protein 1
CryoEM structure of DNA Polymerase alpha - primase bound to SARS CoV nsp1
 0.38 0.00 84.07 0.63 13-127 EM 0.00 monomer 3 x ZN, 1 x SF4 HHblits 0.55
7jqb.1.0
Host translation inhibitor nsp1
SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
 0.08 100.00 0.20 145-180 EM 0.00 hetero-1-1-1-1-1-1-… HHblits 0.63
7jqc.1.0
Host translation inhibitor nsp1
SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
 0.09 100.00 0.20 145-180 EM 0.00 hetero-1-1-1-1-1-1-… HHblits 0.63
2gk4.1.A
conserved hypothetical protein
The Crystal Structure of the DNA/Pantothenate Metabolism Flavoprotein from Streptococcus pneumoniae
 0.07 12.20 0.23 35-75 X-ray 1.83 homo-dimer HHblits 0.27
2gk4.1.B
conserved hypothetical protein
The Crystal Structure of the DNA/Pantothenate Metabolism Flavoprotein from Streptococcus pneumoniae
 0.07 12.20 0.23 35-75 X-ray 1.83 homo-dimer HHblits 0.27
7wuw.1.C
AziU3
Crystal structure of AziU3/U2 from Streptomyces sahachiroi
 0.03 19.44 0.20 31-66 X-ray 1.75 hetero-2-2-mer 3 x MG HHblits 0.29
3w3a.2.H
V-type ATP synthase subunit F
Crystal structure of V1-ATPase at 3.9 angstrom resolution
 0.04 33.33 0.18 33-65 X-ray 3.90 hetero-3-3-1-1-mer 2 x ADP HHblits 0.34
5gar.1.L
V-type ATP synthase subunit F
Thermus thermophilus V/A-ATPase, conformation 1
 0.05 33.33 0.18 33-65 EM 0.00 hetero-3-3-2-2-1-1-… HHblits 0.34
5gas.1.L
V-type ATP synthase subunit F
Thermus thermophilus V/A-ATPase, conformation 2
 0.04 33.33 0.18 33-65 EM 0.00 hetero-3-3-2-2-1-1-… HHblits 0.34
6jqy.1.B
Antitoxin VapB46
Crystal structure of N-terminal domain of VapB46 antitoxin from Mycobacterium tuberculosis
 0.01 23.81 0.12 91-111 X-ray 1.64 homo-dimer HHblits 0.30
6jqy.1.A
Antitoxin VapB46
Crystal structure of N-terminal domain of VapB46 antitoxin from Mycobacterium tuberculosis
 0.01 23.81 0.12 91-111 X-ray 1.64 homo-dimer HHblits 0.30