Export Alignment
Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

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NGL PV

### Untitled Project

### Created: Nov. 19, 2025, 12:26 p.m. at 12:26

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Model 01

Oligo-State
  Monomer

GMQE
  0.95

Ligands

Template
A0A435IQM2.1.A UniProtKB entry unknown, most likely obsolete
AlphaFold DB model of A0A435IQM2 (gene: unknown, organism: unknown)

Seq Identity
  90.29%
Coverage

Biounit Oligo State | Monomer
QSQE | -
Method | AlphaFold v2
Seq Similarity | 0.58
Coverage | 1.00
Range | 1-309

Model-Template Alignment

Model 02

Oligo-State
  Monomer

GMQE
  0.87

QMEANDisCo Global:
  0.86 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6y9f.1.A Ancestral haloalkane dehalogenase AncHLD3
Crystal structure of putative ancestral haloalkane dehalogenase AncHLD3 (node 3)

Seq Identity
  80.74%
Coverage

Biounit Oligo State | Monomer
QSQE | 0.00
Method | X-ray, 1.26 Å
Seq Similarity | 0.56
Coverage | 0.96
Range | 14-300

Ligand | Added to Model | Description
--- | --- | ---
NHE | ✕ - Binding site not conserved. | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
NHE | ✕ - Binding site not conserved. | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Model-Template Alignment

Model 03

Oligo-State
  Monomer
  (matching prediction)

GMQE
  0.78

QMEANDisCo Global:
  0.77 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6ty7.1.B Haloalkane dehalogenase variant DhaA115 domain-swapped dimer type-1
Crystal structure of haloalkane dehalogenase variant DhaA115 domain-swapped dimer type-1

Seq Identity
  53.50%
Coverage

Biounit Oligo State | Homo-dimer
QSQE | 0.61
Method | X-ray, 1.50 Å
Seq Similarity | 0.45
Coverage | 0.93
Range | 13-300

Ligand | Added to Model | Description
--- | --- | ---
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not in contact with model. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
GOL | ✕ - Not biologically relevant. | GLYCEROL
MES | ✕ - Binding site not conserved. | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
NO3 | ✕ - Not biologically relevant. | NITRATE ION
PG4 | ✕ - Not biologically relevant. | TETRAETHYLENE GLYCOL

Model-Template Alignment

Model 05

Oligo-State
  Monomer
  (matching prediction)

GMQE
  0.77

QMEANDisCo Global:
  0.76 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6xtc.1.A Haloalkane dehalogenase variant DhaA177 domain-swapped dimer type-3
Crystal structure of haloalkane dehalogenase variant DhaA177 domain-swapped dimer type-3

Seq Identity
  52.98%
Coverage

Biounit Oligo State | Homo-dimer
QSQE | 0.57
Method | X-ray, 2.54 Å
Seq Similarity | 0.46
Coverage | 0.92
Range | 14-299

Ligand | Added to Model | Description
--- | --- | ---
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not in contact with model. | GLYCEROL
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not in contact with model. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not in contact with model. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not biologically relevant. | SULFATE ION
SO4 | ✕ - Not in contact with model. | SULFATE ION

Model-Template Alignment

Model 04

Oligo-State
  Monomer
  (matching prediction)

GMQE
  0.76

QMEANDisCo Global:
  0.76 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
6xt8.1.B Haloalkane dehalogenase variant DhaA115 domain-swapped dimer type-2
Crystal structure of haloalkane dehalogenase variant DhaA115 domain-swapped dimer type-2

Seq Identity
  53.50%
Coverage

Biounit Oligo State | Homo-dimer
QSQE | 0.65
Method | X-ray, 1.70 Å
Seq Similarity | 0.45
Coverage | 0.93
Range | 13-300

Ligand | Added to Model | Description
--- | --- | ---
CL | ✕ - Not biologically relevant. | CHLORIDE ION
CL | ✕ - Not biologically relevant. | CHLORIDE ION
EDO | ✕ - Not biologically relevant. | 1,2-ETHANEDIOL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
PG4 | ✕ - Not biologically relevant. | TETRAETHYLENE GLYCOL

Model-Template Alignment

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