Workspace for : Example_1

Results

Log - Click to open the log.

INFO - Calculation started
INFO - Checking input files
INFO - Checking model file
INFO - Checking if file is a valid compressed archive
INFO - model_2L01.pdb does not appear to be a valid compressed archive
INFO - Checking if file is a valid PDB file
INFO - Checking reference file
INFO - Checking if file is a valid compressed archive
INFO - 2L01.pdb does not appear to be a valid compressed archive
INFO - Checking if file is a valid PDB file
INFO - 2L01.pdb contains 20 structures: it will be split in 20 different files.
INFO - Input correctly processed
INFO - Structure pre-processing started
INFO - Your input consists in 1 MODELS.
INFO - Pre-processing model model_2L01.pdb
INFO - Your input consists in 20 REFERENCES.
INFO - Pre-processing Reference 2L01_1.pdb
INFO - Pre-processing Reference 2L01_2.pdb
INFO - Pre-processing Reference 2L01_3.pdb
INFO - Pre-processing Reference 2L01_4.pdb
INFO - Pre-processing Reference 2L01_5.pdb
INFO - Pre-processing Reference 2L01_6.pdb
INFO - Pre-processing Reference 2L01_7.pdb
INFO - Pre-processing Reference 2L01_8.pdb
INFO - Pre-processing Reference 2L01_9.pdb
INFO - Pre-processing Reference 2L01_10.pdb
INFO - Pre-processing Reference 2L01_11.pdb
INFO - Pre-processing Reference 2L01_12.pdb
INFO - Pre-processing Reference 2L01_13.pdb
INFO - Pre-processing Reference 2L01_14.pdb
INFO - Pre-processing Reference 2L01_15.pdb
INFO - Pre-processing Reference 2L01_16.pdb
INFO - Pre-processing Reference 2L01_17.pdb
INFO - Pre-processing Reference 2L01_18.pdb
INFO - Pre-processing Reference 2L01_19.pdb
INFO - Pre-processing Reference 2L01_20.pdb
INFO - Structure pre-processing done
INFO - Running lDDT and generating plots
INFO - Running lDDT for model_2L01.pdb_preprocessed
INFO - lDDT for model_2L01.pdb_preprocessed correctly calculated!
INFO - Finished

If you use local distance difference test (lDDT), please cite the following reference:
  • Mariani V., Biasini M., Barbato A., and Schwede T. (2013). lDDT: A local superposition-free score for comparing protein structures and models using distance difference tests. Bioinformatics. Bioinformatics 29 (21), 2722-2728. [PDF]