data_SMR-68ce8b1b3c1762504214be075b089672_1
_entry.id SMR-68ce8b1b3c1762504214be075b089672_1
_struct.entry_id SMR-68ce8b1b3c1762504214be075b089672_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - Q86YL7/ PDPN_HUMAN, Podoplanin

Estimated model accuracy of this model is 0.036, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries Q86YL7'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 29192.147 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP PDPN_HUMAN Q86YL7 1
;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRYSP
;
Podoplanin
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 238 1 238
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . PDPN_HUMAN Q86YL7 Q86YL7-2 1 238 9606 'Homo sapiens (Human)' 2008-11-25
F6A351B5583198FC
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A
;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRYSP
;

;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRYSP
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 LEU .
1 3 THR .
1 4 PRO .
1 5 LEU .
1 6 GLY .
1 7 LYS .
1 8 PHE .
1 9 SER .
1 10 THR .
1 11 ALA .
1 12 LYS .
1 13 PHE .
1 14 ALA .
1 15 VAL .
1 16 ARG .
1 17 LEU .
1 18 PRO .
1 19 ARG .
1 20 VAL .
1 21 TRP .
1 22 GLU .
1 23 ALA .
1 24 ARG .
1 25 ALA .
1 26 PRO .
1 27 SER .
1 28 LEU .
1 29 SER .
1 30 GLY .
1 31 ALA .
1 32 PRO .
1 33 ALA .
1 34 PRO .
1 35 THR .
1 36 PRO .
1 37 PRO .
1 38 ALA .
1 39 PRO .
1 40 PRO .
1 41 PRO .
1 42 SER .
1 43 ARG .
1 44 SER .
1 45 SER .
1 46 ARG .
1 47 LEU .
1 48 GLY .
1 49 LEU .
1 50 TRP .
1 51 PRO .
1 52 ARG .
1 53 CYS .
1 54 PHE .
1 55 LEU .
1 56 ILE .
1 57 PHE .
1 58 PRO .
1 59 GLN .
1 60 LEU .
1 61 ARG .
1 62 ILE .
1 63 LEU .
1 64 LEU .
1 65 LEU .
1 66 GLY .
1 67 PRO .
1 68 GLN .
1 69 GLU .
1 70 SER .
1 71 ASN .
1 72 ASN .
1 73 SER .
1 74 THR .
1 75 GLY .
1 76 THR .
1 77 MET .
1 78 TRP .
1 79 LYS .
1 80 VAL .
1 81 SER .
1 82 ALA .
1 83 LEU .
1 84 LEU .
1 85 PHE .
1 86 VAL .
1 87 LEU .
1 88 GLY .
1 89 SER .
1 90 ALA .
1 91 SER .
1 92 LEU .
1 93 TRP .
1 94 VAL .
1 95 LEU .
1 96 ALA .
1 97 GLU .
1 98 GLY .
1 99 ALA .
1 100 SER .
1 101 THR .
1 102 GLY .
1 103 GLN .
1 104 PRO .
1 105 GLU .
1 106 ASP .
1 107 ASP .
1 108 THR .
1 109 GLU .
1 110 THR .
1 111 THR .
1 112 GLY .
1 113 LEU .
1 114 GLU .
1 115 GLY .
1 116 GLY .
1 117 VAL .
1 118 ALA .
1 119 MET .
1 120 PRO .
1 121 GLY .
1 122 ALA .
1 123 GLU .
1 124 ASP .
1 125 ASP .
1 126 VAL .
1 127 VAL .
1 128 THR .
1 129 PRO .
1 130 GLY .
1 131 THR .
1 132 SER .
1 133 GLU .
1 134 ASP .
1 135 ARG .
1 136 TYR .
1 137 LYS .
1 138 SER .
1 139 GLY .
1 140 LEU .
1 141 THR .
1 142 THR .
1 143 LEU .
1 144 VAL .
1 145 ALA .
1 146 THR .
1 147 SER .
1 148 VAL .
1 149 ASN .
1 150 SER .
1 151 VAL .
1 152 THR .
1 153 GLY .
1 154 ILE .
1 155 ARG .
1 156 ILE .
1 157 GLU .
1 158 ASP .
1 159 LEU .
1 160 PRO .
1 161 THR .
1 162 SER .
1 163 GLU .
1 164 SER .
1 165 THR .
1 166 VAL .
1 167 HIS .
1 168 ALA .
1 169 GLN .
1 170 GLU .
1 171 GLN .
1 172 SER .
1 173 PRO .
1 174 SER .
1 175 ALA .
1 176 THR .
1 177 ALA .
1 178 SER .
1 179 ASN .
1 180 VAL .
1 181 ALA .
1 182 THR .
1 183 SER .
1 184 HIS .
1 185 SER .
1 186 THR .
1 187 GLU .
1 188 LYS .
1 189 VAL .
1 190 ASP .
1 191 GLY .
1 192 ASP .
1 193 THR .
1 194 GLN .
1 195 THR .
1 196 THR .
1 197 VAL .
1 198 GLU .
1 199 LYS .
1 200 ASP .
1 201 GLY .
1 202 LEU .
1 203 SER .
1 204 THR .
1 205 VAL .
1 206 THR .
1 207 LEU .
1 208 VAL .
1 209 GLY .
1 210 ILE .
1 211 ILE .
1 212 VAL .
1 213 GLY .
1 214 VAL .
1 215 LEU .
1 216 LEU .
1 217 ALA .
1 218 ILE .
1 219 GLY .
1 220 PHE .
1 221 ILE .
1 222 GLY .
1 223 ALA .
1 224 ILE .
1 225 ILE .
1 226 VAL .
1 227 VAL .
1 228 VAL .
1 229 MET .
1 230 ARG .
1 231 LYS .
1 232 MET .
1 233 SER .
1 234 GLY .
1 235 ARG .
1 236 TYR .
1 237 SER .
1 238 PRO .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 LEU 2 ? ? ? A .
A 1 3 THR 3 ? ? ? A .
A 1 4 PRO 4 ? ? ? A .
A 1 5 LEU 5 ? ? ? A .
A 1 6 GLY 6 ? ? ? A .
A 1 7 LYS 7 ? ? ? A .
A 1 8 PHE 8 ? ? ? A .
A 1 9 SER 9 ? ? ? A .
A 1 10 THR 10 ? ? ? A .
A 1 11 ALA 11 ? ? ? A .
A 1 12 LYS 12 ? ? ? A .
A 1 13 PHE 13 ? ? ? A .
A 1 14 ALA 14 ? ? ? A .
A 1 15 VAL 15 ? ? ? A .
A 1 16 ARG 16 ? ? ? A .
A 1 17 LEU 17 ? ? ? A .
A 1 18 PRO 18 ? ? ? A .
A 1 19 ARG 19 ? ? ? A .
A 1 20 VAL 20 ? ? ? A .
A 1 21 TRP 21 ? ? ? A .
A 1 22 GLU 22 ? ? ? A .
A 1 23 ALA 23 ? ? ? A .
A 1 24 ARG 24 ? ? ? A .
A 1 25 ALA 25 ? ? ? A .
A 1 26 PRO 26 ? ? ? A .
A 1 27 SER 27 ? ? ? A .
A 1 28 LEU 28 ? ? ? A .
A 1 29 SER 29 ? ? ? A .
A 1 30 GLY 30 ? ? ? A .
A 1 31 ALA 31 ? ? ? A .
A 1 32 PRO 32 ? ? ? A .
A 1 33 ALA 33 ? ? ? A .
A 1 34 PRO 34 ? ? ? A .
A 1 35 THR 35 ? ? ? A .
A 1 36 PRO 36 ? ? ? A .
A 1 37 PRO 37 ? ? ? A .
A 1 38 ALA 38 ? ? ? A .
A 1 39 PRO 39 ? ? ? A .
A 1 40 PRO 40 ? ? ? A .
A 1 41 PRO 41 ? ? ? A .
A 1 42 SER 42 ? ? ? A .
A 1 43 ARG 43 ? ? ? A .
A 1 44 SER 44 ? ? ? A .
A 1 45 SER 45 ? ? ? A .
A 1 46 ARG 46 ? ? ? A .
A 1 47 LEU 47 ? ? ? A .
A 1 48 GLY 48 ? ? ? A .
A 1 49 LEU 49 ? ? ? A .
A 1 50 TRP 50 ? ? ? A .
A 1 51 PRO 51 ? ? ? A .
A 1 52 ARG 52 ? ? ? A .
A 1 53 CYS 53 ? ? ? A .
A 1 54 PHE 54 ? ? ? A .
A 1 55 LEU 55 ? ? ? A .
A 1 56 ILE 56 ? ? ? A .
A 1 57 PHE 57 ? ? ? A .
A 1 58 PRO 58 ? ? ? A .
A 1 59 GLN 59 ? ? ? A .
A 1 60 LEU 60 ? ? ? A .
A 1 61 ARG 61 ? ? ? A .
A 1 62 ILE 62 ? ? ? A .
A 1 63 LEU 63 ? ? ? A .
A 1 64 LEU 64 ? ? ? A .
A 1 65 LEU 65 ? ? ? A .
A 1 66 GLY 66 ? ? ? A .
A 1 67 PRO 67 ? ? ? A .
A 1 68 GLN 68 ? ? ? A .
A 1 69 GLU 69 ? ? ? A .
A 1 70 SER 70 ? ? ? A .
A 1 71 ASN 71 ? ? ? A .
A 1 72 ASN 72 ? ? ? A .
A 1 73 SER 73 ? ? ? A .
A 1 74 THR 74 ? ? ? A .
A 1 75 GLY 75 ? ? ? A .
A 1 76 THR 76 ? ? ? A .
A 1 77 MET 77 ? ? ? A .
A 1 78 TRP 78 ? ? ? A .
A 1 79 LYS 79 ? ? ? A .
A 1 80 VAL 80 ? ? ? A .
A 1 81 SER 81 ? ? ? A .
A 1 82 ALA 82 ? ? ? A .
A 1 83 LEU 83 ? ? ? A .
A 1 84 LEU 84 ? ? ? A .
A 1 85 PHE 85 ? ? ? A .
A 1 86 VAL 86 ? ? ? A .
A 1 87 LEU 87 ? ? ? A .
A 1 88 GLY 88 ? ? ? A .
A 1 89 SER 89 ? ? ? A .
A 1 90 ALA 90 ? ? ? A .
A 1 91 SER 91 ? ? ? A .
A 1 92 LEU 92 ? ? ? A .
A 1 93 TRP 93 ? ? ? A .
A 1 94 VAL 94 ? ? ? A .
A 1 95 LEU 95 ? ? ? A .
A 1 96 ALA 96 ? ? ? A .
A 1 97 GLU 97 ? ? ? A .
A 1 98 GLY 98 ? ? ? A .
A 1 99 ALA 99 ? ? ? A .
A 1 100 SER 100 ? ? ? A .
A 1 101 THR 101 ? ? ? A .
A 1 102 GLY 102 ? ? ? A .
A 1 103 GLN 103 ? ? ? A .
A 1 104 PRO 104 ? ? ? A .
A 1 105 GLU 105 ? ? ? A .
A 1 106 ASP 106 ? ? ? A .
A 1 107 ASP 107 ? ? ? A .
A 1 108 THR 108 ? ? ? A .
A 1 109 GLU 109 ? ? ? A .
A 1 110 THR 110 ? ? ? A .
A 1 111 THR 111 ? ? ? A .
A 1 112 GLY 112 ? ? ? A .
A 1 113 LEU 113 ? ? ? A .
A 1 114 GLU 114 ? ? ? A .
A 1 115 GLY 115 ? ? ? A .
A 1 116 GLY 116 ? ? ? A .
A 1 117 VAL 117 ? ? ? A .
A 1 118 ALA 118 ? ? ? A .
A 1 119 MET 119 ? ? ? A .
A 1 120 PRO 120 ? ? ? A .
A 1 121 GLY 121 ? ? ? A .
A 1 122 ALA 122 ? ? ? A .
A 1 123 GLU 123 ? ? ? A .
A 1 124 ASP 124 ? ? ? A .
A 1 125 ASP 125 ? ? ? A .
A 1 126 VAL 126 ? ? ? A .
A 1 127 VAL 127 ? ? ? A .
A 1 128 THR 128 ? ? ? A .
A 1 129 PRO 129 ? ? ? A .
A 1 130 GLY 130 ? ? ? A .
A 1 131 THR 131 ? ? ? A .
A 1 132 SER 132 ? ? ? A .
A 1 133 GLU 133 ? ? ? A .
A 1 134 ASP 134 ? ? ? A .
A 1 135 ARG 135 ? ? ? A .
A 1 136 TYR 136 ? ? ? A .
A 1 137 LYS 137 ? ? ? A .
A 1 138 SER 138 ? ? ? A .
A 1 139 GLY 139 ? ? ? A .
A 1 140 LEU 140 ? ? ? A .
A 1 141 THR 141 ? ? ? A .
A 1 142 THR 142 ? ? ? A .
A 1 143 LEU 143 ? ? ? A .
A 1 144 VAL 144 ? ? ? A .
A 1 145 ALA 145 ? ? ? A .
A 1 146 THR 146 ? ? ? A .
A 1 147 SER 147 ? ? ? A .
A 1 148 VAL 148 ? ? ? A .
A 1 149 ASN 149 ? ? ? A .
A 1 150 SER 150 ? ? ? A .
A 1 151 VAL 151 ? ? ? A .
A 1 152 THR 152 ? ? ? A .
A 1 153 GLY 153 ? ? ? A .
A 1 154 ILE 154 ? ? ? A .
A 1 155 ARG 155 ? ? ? A .
A 1 156 ILE 156 ? ? ? A .
A 1 157 GLU 157 ? ? ? A .
A 1 158 ASP 158 ? ? ? A .
A 1 159 LEU 159 ? ? ? A .
A 1 160 PRO 160 ? ? ? A .
A 1 161 THR 161 ? ? ? A .
A 1 162 SER 162 ? ? ? A .
A 1 163 GLU 163 ? ? ? A .
A 1 164 SER 164 ? ? ? A .
A 1 165 THR 165 ? ? ? A .
A 1 166 VAL 166 ? ? ? A .
A 1 167 HIS 167 ? ? ? A .
A 1 168 ALA 168 ? ? ? A .
A 1 169 GLN 169 ? ? ? A .
A 1 170 GLU 170 ? ? ? A .
A 1 171 GLN 171 ? ? ? A .
A 1 172 SER 172 ? ? ? A .
A 1 173 PRO 173 ? ? ? A .
A 1 174 SER 174 ? ? ? A .
A 1 175 ALA 175 ? ? ? A .
A 1 176 THR 176 ? ? ? A .
A 1 177 ALA 177 ? ? ? A .
A 1 178 SER 178 ? ? ? A .
A 1 179 ASN 179 ? ? ? A .
A 1 180 VAL 180 ? ? ? A .
A 1 181 ALA 181 ? ? ? A .
A 1 182 THR 182 ? ? ? A .
A 1 183 SER 183 ? ? ? A .
A 1 184 HIS 184 ? ? ? A .
A 1 185 SER 185 ? ? ? A .
A 1 186 THR 186 ? ? ? A .
A 1 187 GLU 187 ? ? ? A .
A 1 188 LYS 188 ? ? ? A .
A 1 189 VAL 189 ? ? ? A .
A 1 190 ASP 190 ? ? ? A .
A 1 191 GLY 191 ? ? ? A .
A 1 192 ASP 192 ? ? ? A .
A 1 193 THR 193 ? ? ? A .
A 1 194 GLN 194 ? ? ? A .
A 1 195 THR 195 ? ? ? A .
A 1 196 THR 196 ? ? ? A .
A 1 197 VAL 197 ? ? ? A .
A 1 198 GLU 198 ? ? ? A .
A 1 199 LYS 199 199 LYS LYS A .
A 1 200 ASP 200 200 ASP ASP A .
A 1 201 GLY 201 201 GLY GLY A .
A 1 202 LEU 202 202 LEU LEU A .
A 1 203 SER 203 203 SER SER A .
A 1 204 THR 204 204 THR THR A .
A 1 205 VAL 205 205 VAL VAL A .
A 1 206 THR 206 206 THR THR A .
A 1 207 LEU 207 207 LEU LEU A .
A 1 208 VAL 208 208 VAL VAL A .
A 1 209 GLY 209 209 GLY GLY A .
A 1 210 ILE 210 210 ILE ILE A .
A 1 211 ILE 211 211 ILE ILE A .
A 1 212 VAL 212 212 VAL VAL A .
A 1 213 GLY 213 213 GLY GLY A .
A 1 214 VAL 214 214 VAL VAL A .
A 1 215 LEU 215 215 LEU LEU A .
A 1 216 LEU 216 216 LEU LEU A .
A 1 217 ALA 217 217 ALA ALA A .
A 1 218 ILE 218 218 ILE ILE A .
A 1 219 GLY 219 219 GLY GLY A .
A 1 220 PHE 220 220 PHE PHE A .
A 1 221 ILE 221 221 ILE ILE A .
A 1 222 GLY 222 222 GLY GLY A .
A 1 223 ALA 223 223 ALA ALA A .
A 1 224 ILE 224 224 ILE ILE A .
A 1 225 ILE 225 225 ILE ILE A .
A 1 226 VAL 226 226 VAL VAL A .
A 1 227 VAL 227 227 VAL VAL A .
A 1 228 VAL 228 228 VAL VAL A .
A 1 229 MET 229 229 MET MET A .
A 1 230 ARG 230 230 ARG ARG A .
A 1 231 LYS 231 231 LYS LYS A .
A 1 232 MET 232 232 MET MET A .
A 1 233 SER 233 233 SER SER A .
A 1 234 GLY 234 234 GLY GLY A .
A 1 235 ARG 235 ? ? ? A .
A 1 236 TYR 236 ? ? ? A .
A 1 237 SER 237 ? ? ? A .
A 1 238 PRO 238 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Integrin beta-2 {PDB ID=5zaz, label_asym_id=A, auth_asym_id=A, SMTL ID=5zaz.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 5zaz, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-07
6 PDB https://www.wwpdb.org . 2024-11-01
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 PVDESRESVAGPNIAAIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFE
PVDESRESVAGPNIAAIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFE
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 9 44
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 5zaz 2024-05-15
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 238
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 238 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 0.005 22.222
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQESNNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGRYSP
2 1 2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAGPNIAAIVGGTVAGIVLIGILLLVIWKALIHLSD----
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 5zaz.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . LYS 199 199 ? A 15.582 1.020 -19.623 1 1 A LYS 0.280 1
ATOM 2 C CA . LYS 199 199 ? A 16.747 1.559 -20.424 1 1 A LYS 0.280 1
ATOM 3 C C . LYS 199 199 ? A 17.058 0.613 -21.555 1 1 A LYS 0.280 1
ATOM 4 O O . LYS 199 199 ? A 16.847 -0.574 -21.347 1 1 A LYS 0.280 1
ATOM 5 C CB . LYS 199 199 ? A 18.016 1.647 -19.527 1 1 A LYS 0.280 1
ATOM 6 C CG . LYS 199 199 ? A 17.951 2.739 -18.449 1 1 A LYS 0.280 1
ATOM 7 C CD . LYS 199 199 ? A 19.263 2.842 -17.648 1 1 A LYS 0.280 1
ATOM 8 C CE . LYS 199 199 ? A 19.213 3.939 -16.573 1 1 A LYS 0.280 1
ATOM 9 N NZ . LYS 199 199 ? A 20.479 3.990 -15.807 1 1 A LYS 0.280 1
ATOM 10 N N . ASP 200 200 ? A 17.528 1.118 -22.719 1 1 A ASP 0.330 1
ATOM 11 C CA . ASP 200 200 ? A 17.845 0.322 -23.887 1 1 A ASP 0.330 1
ATOM 12 C C . ASP 200 200 ? A 18.534 1.293 -24.862 1 1 A ASP 0.330 1
ATOM 13 O O . ASP 200 200 ? A 19.725 1.230 -25.115 1 1 A ASP 0.330 1
ATOM 14 C CB . ASP 200 200 ? A 16.533 -0.314 -24.453 1 1 A ASP 0.330 1
ATOM 15 C CG . ASP 200 200 ? A 16.780 -1.343 -25.544 1 1 A ASP 0.330 1
ATOM 16 O OD1 . ASP 200 200 ? A 17.960 -1.651 -25.819 1 1 A ASP 0.330 1
ATOM 17 O OD2 . ASP 200 200 ? A 15.758 -1.829 -26.089 1 1 A ASP 0.330 1
ATOM 18 N N . GLY 201 201 ? A 17.783 2.327 -25.327 1 1 A GLY 0.310 1
ATOM 19 C CA . GLY 201 201 ? A 18.271 3.246 -26.357 1 1 A GLY 0.310 1
ATOM 20 C C . GLY 201 201 ? A 17.997 2.685 -27.720 1 1 A GLY 0.310 1
ATOM 21 O O . GLY 201 201 ? A 18.909 2.304 -28.444 1 1 A GLY 0.310 1
ATOM 22 N N . LEU 202 202 ? A 16.701 2.657 -28.100 1 1 A LEU 0.230 1
ATOM 23 C CA . LEU 202 202 ? A 16.190 2.321 -29.419 1 1 A LEU 0.230 1
ATOM 24 C C . LEU 202 202 ? A 16.762 3.181 -30.551 1 1 A LEU 0.230 1
ATOM 25 O O . LEU 202 202 ? A 17.655 4.008 -30.363 1 1 A LEU 0.230 1
ATOM 26 C CB . LEU 202 202 ? A 14.628 2.331 -29.440 1 1 A LEU 0.230 1
ATOM 27 C CG . LEU 202 202 ? A 14.006 1.425 -28.357 1 1 A LEU 0.230 1
ATOM 28 C CD1 . LEU 202 202 ? A 12.488 1.654 -28.281 1 1 A LEU 0.230 1
ATOM 29 C CD2 . LEU 202 202 ? A 14.345 -0.057 -28.603 1 1 A LEU 0.230 1
ATOM 30 N N . SER 203 203 ? A 16.234 3.020 -31.783 1 1 A SER 0.200 1
ATOM 31 C CA . SER 203 203 ? A 16.491 3.889 -32.936 1 1 A SER 0.200 1
ATOM 32 C C . SER 203 203 ? A 16.265 5.390 -32.686 1 1 A SER 0.200 1
ATOM 33 O O . SER 203 203 ? A 15.996 5.844 -31.571 1 1 A SER 0.200 1
ATOM 34 C CB . SER 203 203 ? A 15.695 3.439 -34.210 1 1 A SER 0.200 1
ATOM 35 O OG . SER 203 203 ? A 14.296 3.732 -34.119 1 1 A SER 0.200 1
ATOM 36 N N . THR 204 204 ? A 16.308 6.240 -33.735 1 1 A THR 0.430 1
ATOM 37 C CA . THR 204 204 ? A 16.010 7.677 -33.659 1 1 A THR 0.430 1
ATOM 38 C C . THR 204 204 ? A 14.694 8.010 -32.970 1 1 A THR 0.430 1
ATOM 39 O O . THR 204 204 ? A 14.576 9.035 -32.301 1 1 A THR 0.430 1
ATOM 40 C CB . THR 204 204 ? A 15.984 8.323 -35.036 1 1 A THR 0.430 1
ATOM 41 O OG1 . THR 204 204 ? A 17.221 8.078 -35.679 1 1 A THR 0.430 1
ATOM 42 C CG2 . THR 204 204 ? A 15.815 9.851 -34.962 1 1 A THR 0.430 1
ATOM 43 N N . VAL 205 205 ? A 13.701 7.084 -33.050 1 1 A VAL 0.510 1
ATOM 44 C CA . VAL 205 205 ? A 12.413 7.103 -32.360 1 1 A VAL 0.510 1
ATOM 45 C C . VAL 205 205 ? A 12.551 7.399 -30.878 1 1 A VAL 0.510 1
ATOM 46 O O . VAL 205 205 ? A 11.721 8.115 -30.330 1 1 A VAL 0.510 1
ATOM 47 C CB . VAL 205 205 ? A 11.657 5.776 -32.508 1 1 A VAL 0.510 1
ATOM 48 C CG1 . VAL 205 205 ? A 10.340 5.762 -31.685 1 1 A VAL 0.510 1
ATOM 49 C CG2 . VAL 205 205 ? A 11.328 5.562 -33.999 1 1 A VAL 0.510 1
ATOM 50 N N . THR 206 206 ? A 13.633 6.909 -30.207 1 1 A THR 0.580 1
ATOM 51 C CA . THR 206 206 ? A 13.954 7.230 -28.812 1 1 A THR 0.580 1
ATOM 52 C C . THR 206 206 ? A 13.915 8.722 -28.561 1 1 A THR 0.580 1
ATOM 53 O O . THR 206 206 ? A 13.114 9.200 -27.779 1 1 A THR 0.580 1
ATOM 54 C CB . THR 206 206 ? A 15.345 6.749 -28.380 1 1 A THR 0.580 1
ATOM 55 O OG1 . THR 206 206 ? A 15.430 5.344 -28.430 1 1 A THR 0.580 1
ATOM 56 C CG2 . THR 206 206 ? A 15.691 7.078 -26.922 1 1 A THR 0.580 1
ATOM 57 N N . LEU 207 207 ? A 14.714 9.529 -29.302 1 1 A LEU 0.590 1
ATOM 58 C CA . LEU 207 207 ? A 14.675 10.972 -29.151 1 1 A LEU 0.590 1
ATOM 59 C C . LEU 207 207 ? A 13.362 11.575 -29.591 1 1 A LEU 0.590 1
ATOM 60 O O . LEU 207 207 ? A 12.807 12.407 -28.891 1 1 A LEU 0.590 1
ATOM 61 C CB . LEU 207 207 ? A 15.807 11.662 -29.936 1 1 A LEU 0.590 1
ATOM 62 C CG . LEU 207 207 ? A 17.211 11.367 -29.377 1 1 A LEU 0.590 1
ATOM 63 C CD1 . LEU 207 207 ? A 18.260 11.938 -30.342 1 1 A LEU 0.590 1
ATOM 64 C CD2 . LEU 207 207 ? A 17.404 11.949 -27.961 1 1 A LEU 0.590 1
ATOM 65 N N . VAL 208 208 ? A 12.806 11.128 -30.741 1 1 A VAL 0.610 1
ATOM 66 C CA . VAL 208 208 ? A 11.566 11.672 -31.289 1 1 A VAL 0.610 1
ATOM 67 C C . VAL 208 208 ? A 10.403 11.571 -30.311 1 1 A VAL 0.610 1
ATOM 68 O O . VAL 208 208 ? A 9.713 12.553 -30.055 1 1 A VAL 0.610 1
ATOM 69 C CB . VAL 208 208 ? A 11.161 10.936 -32.569 1 1 A VAL 0.610 1
ATOM 70 C CG1 . VAL 208 208 ? A 9.833 11.478 -33.151 1 1 A VAL 0.610 1
ATOM 71 C CG2 . VAL 208 208 ? A 12.278 11.082 -33.621 1 1 A VAL 0.610 1
ATOM 72 N N . GLY 209 209 ? A 10.223 10.373 -29.701 1 1 A GLY 0.690 1
ATOM 73 C CA . GLY 209 209 ? A 9.189 10.058 -28.725 1 1 A GLY 0.690 1
ATOM 74 C C . GLY 209 209 ? A 9.398 10.729 -27.394 1 1 A GLY 0.690 1
ATOM 75 O O . GLY 209 209 ? A 8.439 11.141 -26.738 1 1 A GLY 0.690 1
ATOM 76 N N . ILE 210 210 ? A 10.665 10.895 -26.965 1 1 A ILE 0.690 1
ATOM 77 C CA . ILE 210 210 ? A 11.027 11.687 -25.795 1 1 A ILE 0.690 1
ATOM 78 C C . ILE 210 210 ? A 10.670 13.157 -25.977 1 1 A ILE 0.690 1
ATOM 79 O O . ILE 210 210 ? A 10.015 13.736 -25.124 1 1 A ILE 0.690 1
ATOM 80 C CB . ILE 210 210 ? A 12.510 11.516 -25.436 1 1 A ILE 0.690 1
ATOM 81 C CG1 . ILE 210 210 ? A 12.735 10.090 -24.870 1 1 A ILE 0.690 1
ATOM 82 C CG2 . ILE 210 210 ? A 13.017 12.576 -24.419 1 1 A ILE 0.690 1
ATOM 83 C CD1 . ILE 210 210 ? A 14.220 9.706 -24.816 1 1 A ILE 0.690 1
ATOM 84 N N . ILE 211 211 ? A 11.024 13.793 -27.121 1 1 A ILE 0.700 1
ATOM 85 C CA . ILE 211 211 ? A 10.787 15.220 -27.348 1 1 A ILE 0.700 1
ATOM 86 C C . ILE 211 211 ? A 9.314 15.578 -27.333 1 1 A ILE 0.700 1
ATOM 87 O O . ILE 211 211 ? A 8.888 16.506 -26.642 1 1 A ILE 0.700 1
ATOM 88 C CB . ILE 211 211 ? A 11.367 15.661 -28.694 1 1 A ILE 0.700 1
ATOM 89 C CG1 . ILE 211 211 ? A 12.913 15.584 -28.662 1 1 A ILE 0.700 1
ATOM 90 C CG2 . ILE 211 211 ? A 10.908 17.098 -29.074 1 1 A ILE 0.700 1
ATOM 91 C CD1 . ILE 211 211 ? A 13.533 15.671 -30.064 1 1 A ILE 0.700 1
ATOM 92 N N . VAL 212 212 ? A 8.490 14.800 -28.074 1 1 A VAL 0.730 1
ATOM 93 C CA . VAL 212 212 ? A 7.048 14.970 -28.123 1 1 A VAL 0.730 1
ATOM 94 C C . VAL 212 212 ? A 6.434 14.752 -26.753 1 1 A VAL 0.730 1
ATOM 95 O O . VAL 212 212 ? A 5.620 15.543 -26.296 1 1 A VAL 0.730 1
ATOM 96 C CB . VAL 212 212 ? A 6.386 14.095 -29.204 1 1 A VAL 0.730 1
ATOM 97 C CG1 . VAL 212 212 ? A 6.628 12.591 -28.983 1 1 A VAL 0.730 1
ATOM 98 C CG2 . VAL 212 212 ? A 4.869 14.343 -29.268 1 1 A VAL 0.730 1
ATOM 99 N N . GLY 213 213 ? A 6.897 13.703 -26.025 1 1 A GLY 0.720 1
ATOM 100 C CA . GLY 213 213 ? A 6.375 13.344 -24.721 1 1 A GLY 0.720 1
ATOM 101 C C . GLY 213 213 ? A 6.684 14.373 -23.688 1 1 A GLY 0.720 1
ATOM 102 O O . GLY 213 213 ? A 5.809 14.720 -22.905 1 1 A GLY 0.720 1
ATOM 103 N N . VAL 214 214 ? A 7.907 14.942 -23.696 1 1 A VAL 0.730 1
ATOM 104 C CA . VAL 214 214 ? A 8.293 16.066 -22.857 1 1 A VAL 0.730 1
ATOM 105 C C . VAL 214 214 ? A 7.435 17.291 -23.133 1 1 A VAL 0.730 1
ATOM 106 O O . VAL 214 214 ? A 6.791 17.810 -22.234 1 1 A VAL 0.730 1
ATOM 107 C CB . VAL 214 214 ? A 9.785 16.395 -23.037 1 1 A VAL 0.730 1
ATOM 108 C CG1 . VAL 214 214 ? A 10.196 17.759 -22.439 1 1 A VAL 0.730 1
ATOM 109 C CG2 . VAL 214 214 ? A 10.603 15.295 -22.332 1 1 A VAL 0.730 1
ATOM 110 N N . LEU 215 215 ? A 7.337 17.747 -24.404 1 1 A LEU 0.730 1
ATOM 111 C CA . LEU 215 215 ? A 6.614 18.966 -24.729 1 1 A LEU 0.730 1
ATOM 112 C C . LEU 215 215 ? A 5.125 18.907 -24.418 1 1 A LEU 0.730 1
ATOM 113 O O . LEU 215 215 ? A 4.557 19.812 -23.807 1 1 A LEU 0.730 1
ATOM 114 C CB . LEU 215 215 ? A 6.777 19.273 -26.235 1 1 A LEU 0.730 1
ATOM 115 C CG . LEU 215 215 ? A 6.018 20.533 -26.718 1 1 A LEU 0.730 1
ATOM 116 C CD1 . LEU 215 215 ? A 6.514 21.820 -26.029 1 1 A LEU 0.730 1
ATOM 117 C CD2 . LEU 215 215 ? A 6.105 20.648 -28.246 1 1 A LEU 0.730 1
ATOM 118 N N . LEU 216 216 ? A 4.466 17.796 -24.808 1 1 A LEU 0.730 1
ATOM 119 C CA . LEU 216 216 ? A 3.074 17.535 -24.509 1 1 A LEU 0.730 1
ATOM 120 C C . LEU 216 216 ? A 2.825 17.388 -23.035 1 1 A LEU 0.730 1
ATOM 121 O O . LEU 216 216 ? A 1.838 17.914 -22.524 1 1 A LEU 0.730 1
ATOM 122 C CB . LEU 216 216 ? A 2.587 16.239 -25.185 1 1 A LEU 0.730 1
ATOM 123 C CG . LEU 216 216 ? A 2.474 16.326 -26.716 1 1 A LEU 0.730 1
ATOM 124 C CD1 . LEU 216 216 ? A 2.116 14.933 -27.247 1 1 A LEU 0.730 1
ATOM 125 C CD2 . LEU 216 216 ? A 1.430 17.359 -27.176 1 1 A LEU 0.730 1
ATOM 126 N N . ALA 217 217 ? A 3.732 16.700 -22.299 1 1 A ALA 0.740 1
ATOM 127 C CA . ALA 217 217 ? A 3.650 16.609 -20.864 1 1 A ALA 0.740 1
ATOM 128 C C . ALA 217 217 ? A 3.674 17.990 -20.221 1 1 A ALA 0.740 1
ATOM 129 O O . ALA 217 217 ? A 2.753 18.347 -19.532 1 1 A ALA 0.740 1
ATOM 130 C CB . ALA 217 217 ? A 4.793 15.735 -20.294 1 1 A ALA 0.740 1
ATOM 131 N N . ILE 218 218 ? A 4.676 18.851 -20.558 1 1 A ILE 0.720 1
ATOM 132 C CA . ILE 218 218 ? A 4.797 20.188 -19.977 1 1 A ILE 0.720 1
ATOM 133 C C . ILE 218 218 ? A 3.573 21.035 -20.273 1 1 A ILE 0.720 1
ATOM 134 O O . ILE 218 218 ? A 3.044 21.706 -19.389 1 1 A ILE 0.720 1
ATOM 135 C CB . ILE 218 218 ? A 6.054 20.904 -20.472 1 1 A ILE 0.720 1
ATOM 136 C CG1 . ILE 218 218 ? A 7.328 20.123 -20.076 1 1 A ILE 0.720 1
ATOM 137 C CG2 . ILE 218 218 ? A 6.156 22.342 -19.898 1 1 A ILE 0.720 1
ATOM 138 C CD1 . ILE 218 218 ? A 8.471 20.397 -21.058 1 1 A ILE 0.720 1
ATOM 139 N N . GLY 219 219 ? A 3.053 20.967 -21.519 1 1 A GLY 0.730 1
ATOM 140 C CA . GLY 219 219 ? A 1.863 21.692 -21.939 1 1 A GLY 0.730 1
ATOM 141 C C . GLY 219 219 ? A 0.607 21.273 -21.225 1 1 A GLY 0.730 1
ATOM 142 O O . GLY 219 219 ? A -0.090 22.116 -20.673 1 1 A GLY 0.730 1
ATOM 143 N N . PHE 220 220 ? A 0.283 19.965 -21.176 1 1 A PHE 0.710 1
ATOM 144 C CA . PHE 220 220 ? A -0.853 19.454 -20.421 1 1 A PHE 0.710 1
ATOM 145 C C . PHE 220 220 ? A -0.731 19.627 -18.920 1 1 A PHE 0.710 1
ATOM 146 O O . PHE 220 220 ? A -1.698 20.004 -18.262 1 1 A PHE 0.710 1
ATOM 147 C CB . PHE 220 220 ? A -1.108 17.951 -20.710 1 1 A PHE 0.710 1
ATOM 148 C CG . PHE 220 220 ? A -1.622 17.717 -22.108 1 1 A PHE 0.710 1
ATOM 149 C CD1 . PHE 220 220 ? A -2.606 18.536 -22.700 1 1 A PHE 0.710 1
ATOM 150 C CD2 . PHE 220 220 ? A -1.161 16.600 -22.824 1 1 A PHE 0.710 1
ATOM 151 C CE1 . PHE 220 220 ? A -3.082 18.265 -23.989 1 1 A PHE 0.710 1
ATOM 152 C CE2 . PHE 220 220 ? A -1.648 16.316 -24.106 1 1 A PHE 0.710 1
ATOM 153 C CZ . PHE 220 220 ? A -2.603 17.155 -24.693 1 1 A PHE 0.710 1
ATOM 154 N N . ILE 221 221 ? A 0.465 19.384 -18.337 1 1 A ILE 0.730 1
ATOM 155 C CA . ILE 221 221 ? A 0.730 19.604 -16.923 1 1 A ILE 0.730 1
ATOM 156 C C . ILE 221 221 ? A 0.542 21.056 -16.573 1 1 A ILE 0.730 1
ATOM 157 O O . ILE 221 221 ? A -0.256 21.385 -15.709 1 1 A ILE 0.730 1
ATOM 158 C CB . ILE 221 221 ? A 2.153 19.176 -16.544 1 1 A ILE 0.730 1
ATOM 159 C CG1 . ILE 221 221 ? A 2.252 17.631 -16.586 1 1 A ILE 0.730 1
ATOM 160 C CG2 . ILE 221 221 ? A 2.605 19.715 -15.157 1 1 A ILE 0.730 1
ATOM 161 C CD1 . ILE 221 221 ? A 3.703 17.129 -16.588 1 1 A ILE 0.730 1
ATOM 162 N N . GLY 222 222 ? A 1.201 21.986 -17.309 1 1 A GLY 0.730 1
ATOM 163 C CA . GLY 222 222 ? A 1.061 23.400 -17.029 1 1 A GLY 0.730 1
ATOM 164 C C . GLY 222 222 ? A -0.330 23.898 -17.277 1 1 A GLY 0.730 1
ATOM 165 O O . GLY 222 222 ? A -0.811 24.726 -16.541 1 1 A GLY 0.730 1
ATOM 166 N N . ALA 223 223 ? A -1.045 23.346 -18.283 1 1 A ALA 0.740 1
ATOM 167 C CA . ALA 223 223 ? A -2.426 23.698 -18.518 1 1 A ALA 0.740 1
ATOM 168 C C . ALA 223 223 ? A -3.350 23.328 -17.374 1 1 A ALA 0.740 1
ATOM 169 O O . ALA 223 223 ? A -4.032 24.189 -16.836 1 1 A ALA 0.740 1
ATOM 170 C CB . ALA 223 223 ? A -2.922 22.978 -19.788 1 1 A ALA 0.740 1
ATOM 171 N N . ILE 224 224 ? A -3.338 22.055 -16.905 1 1 A ILE 0.720 1
ATOM 172 C CA . ILE 224 224 ? A -4.161 21.633 -15.780 1 1 A ILE 0.720 1
ATOM 173 C C . ILE 224 224 ? A -3.775 22.394 -14.533 1 1 A ILE 0.720 1
ATOM 174 O O . ILE 224 224 ? A -4.631 22.956 -13.875 1 1 A ILE 0.720 1
ATOM 175 C CB . ILE 224 224 ? A -4.100 20.122 -15.550 1 1 A ILE 0.720 1
ATOM 176 C CG1 . ILE 224 224 ? A -4.752 19.406 -16.761 1 1 A ILE 0.720 1
ATOM 177 C CG2 . ILE 224 224 ? A -4.804 19.710 -14.224 1 1 A ILE 0.720 1
ATOM 178 C CD1 . ILE 224 224 ? A -4.478 17.897 -16.782 1 1 A ILE 0.720 1
ATOM 179 N N . ILE 225 225 ? A -2.460 22.526 -14.240 1 1 A ILE 0.710 1
ATOM 180 C CA . ILE 225 225 ? A -1.994 23.266 -13.078 1 1 A ILE 0.710 1
ATOM 181 C C . ILE 225 225 ? A -2.404 24.726 -13.117 1 1 A ILE 0.710 1
ATOM 182 O O . ILE 225 225 ? A -2.982 25.211 -12.156 1 1 A ILE 0.710 1
ATOM 183 C CB . ILE 225 225 ? A -0.477 23.135 -12.921 1 1 A ILE 0.710 1
ATOM 184 C CG1 . ILE 225 225 ? A -0.093 21.662 -12.599 1 1 A ILE 0.710 1
ATOM 185 C CG2 . ILE 225 225 ? A 0.111 24.114 -11.869 1 1 A ILE 0.710 1
ATOM 186 C CD1 . ILE 225 225 ? A -0.522 21.157 -11.212 1 1 A ILE 0.710 1
ATOM 187 N N . VAL 226 226 ? A -2.200 25.457 -14.236 1 1 A VAL 0.710 1
ATOM 188 C CA . VAL 226 226 ? A -2.572 26.863 -14.359 1 1 A VAL 0.710 1
ATOM 189 C C . VAL 226 226 ? A -4.065 27.068 -14.267 1 1 A VAL 0.710 1
ATOM 190 O O . VAL 226 226 ? A -4.532 27.948 -13.536 1 1 A VAL 0.710 1
ATOM 191 C CB . VAL 226 226 ? A -2.070 27.445 -15.685 1 1 A VAL 0.710 1
ATOM 192 C CG1 . VAL 226 226 ? A -2.729 28.791 -16.079 1 1 A VAL 0.710 1
ATOM 193 C CG2 . VAL 226 226 ? A -0.541 27.628 -15.574 1 1 A VAL 0.710 1
ATOM 194 N N . VAL 227 227 ? A -4.858 26.243 -14.987 1 1 A VAL 0.700 1
ATOM 195 C CA . VAL 227 227 ? A -6.308 26.310 -14.985 1 1 A VAL 0.700 1
ATOM 196 C C . VAL 227 227 ? A -6.854 26.007 -13.609 1 1 A VAL 0.700 1
ATOM 197 O O . VAL 227 227 ? A -7.624 26.793 -13.080 1 1 A VAL 0.700 1
ATOM 198 C CB . VAL 227 227 ? A -6.941 25.362 -16.005 1 1 A VAL 0.700 1
ATOM 199 C CG1 . VAL 227 227 ? A -8.485 25.311 -15.877 1 1 A VAL 0.700 1
ATOM 200 C CG2 . VAL 227 227 ? A -6.576 25.845 -17.425 1 1 A VAL 0.700 1
ATOM 201 N N . VAL 228 228 ? A -6.407 24.907 -12.956 1 1 A VAL 0.690 1
ATOM 202 C CA . VAL 228 228 ? A -6.798 24.551 -11.599 1 1 A VAL 0.690 1
ATOM 203 C C . VAL 228 228 ? A -6.369 25.605 -10.609 1 1 A VAL 0.690 1
ATOM 204 O O . VAL 228 228 ? A -7.175 26.037 -9.793 1 1 A VAL 0.690 1
ATOM 205 C CB . VAL 228 228 ? A -6.262 23.174 -11.190 1 1 A VAL 0.690 1
ATOM 206 C CG1 . VAL 228 228 ? A -6.344 22.892 -9.668 1 1 A VAL 0.690 1
ATOM 207 C CG2 . VAL 228 228 ? A -7.070 22.115 -11.972 1 1 A VAL 0.690 1
ATOM 208 N N . MET 229 229 ? A -5.122 26.114 -10.686 1 1 A MET 0.610 1
ATOM 209 C CA . MET 229 229 ? A -4.628 27.129 -9.782 1 1 A MET 0.610 1
ATOM 210 C C . MET 229 229 ? A -5.434 28.411 -9.835 1 1 A MET 0.610 1
ATOM 211 O O . MET 229 229 ? A -5.863 28.920 -8.818 1 1 A MET 0.610 1
ATOM 212 C CB . MET 229 229 ? A -3.158 27.469 -10.124 1 1 A MET 0.610 1
ATOM 213 C CG . MET 229 229 ? A -2.495 28.519 -9.212 1 1 A MET 0.610 1
ATOM 214 S SD . MET 229 229 ? A -0.776 28.885 -9.685 1 1 A MET 0.610 1
ATOM 215 C CE . MET 229 229 ? A -1.156 29.807 -11.208 1 1 A MET 0.610 1
ATOM 216 N N . ARG 230 230 ? A -5.720 28.936 -11.045 1 1 A ARG 0.530 1
ATOM 217 C CA . ARG 230 230 ? A -6.567 30.103 -11.196 1 1 A ARG 0.530 1
ATOM 218 C C . ARG 230 230 ? A -8.030 29.844 -10.873 1 1 A ARG 0.530 1
ATOM 219 O O . ARG 230 230 ? A -8.717 30.726 -10.376 1 1 A ARG 0.530 1
ATOM 220 C CB . ARG 230 230 ? A -6.460 30.661 -12.627 1 1 A ARG 0.530 1
ATOM 221 C CG . ARG 230 230 ? A -5.072 31.239 -12.965 1 1 A ARG 0.530 1
ATOM 222 C CD . ARG 230 230 ? A -5.040 31.728 -14.411 1 1 A ARG 0.530 1
ATOM 223 N NE . ARG 230 230 ? A -3.673 32.285 -14.679 1 1 A ARG 0.530 1
ATOM 224 C CZ . ARG 230 230 ? A -3.277 32.710 -15.886 1 1 A ARG 0.530 1
ATOM 225 N NH1 . ARG 230 230 ? A -4.095 32.656 -16.931 1 1 A ARG 0.530 1
ATOM 226 N NH2 . ARG 230 230 ? A -2.051 33.198 -16.060 1 1 A ARG 0.530 1
ATOM 227 N N . LYS 231 231 ? A -8.545 28.632 -11.163 1 1 A LYS 0.550 1
ATOM 228 C CA . LYS 231 231 ? A -9.899 28.230 -10.845 1 1 A LYS 0.550 1
ATOM 229 C C . LYS 231 231 ? A -10.181 28.086 -9.356 1 1 A LYS 0.550 1
ATOM 230 O O . LYS 231 231 ? A -11.217 28.511 -8.876 1 1 A LYS 0.550 1
ATOM 231 C CB . LYS 231 231 ? A -10.207 26.878 -11.528 1 1 A LYS 0.550 1
ATOM 232 C CG . LYS 231 231 ? A -11.649 26.396 -11.347 1 1 A LYS 0.550 1
ATOM 233 C CD . LYS 231 231 ? A -11.922 25.115 -12.141 1 1 A LYS 0.550 1
ATOM 234 C CE . LYS 231 231 ? A -13.368 24.649 -11.962 1 1 A LYS 0.550 1
ATOM 235 N NZ . LYS 231 231 ? A -13.607 23.416 -12.739 1 1 A LYS 0.550 1
ATOM 236 N N . MET 232 232 ? A -9.253 27.451 -8.602 1 1 A MET 0.440 1
ATOM 237 C CA . MET 232 232 ? A -9.354 27.291 -7.164 1 1 A MET 0.440 1
ATOM 238 C C . MET 232 232 ? A -8.982 28.543 -6.380 1 1 A MET 0.440 1
ATOM 239 O O . MET 232 232 ? A -9.435 28.720 -5.259 1 1 A MET 0.440 1
ATOM 240 C CB . MET 232 232 ? A -8.405 26.157 -6.684 1 1 A MET 0.440 1
ATOM 241 C CG . MET 232 232 ? A -8.791 24.746 -7.180 1 1 A MET 0.440 1
ATOM 242 S SD . MET 232 232 ? A -10.488 24.219 -6.773 1 1 A MET 0.440 1
ATOM 243 C CE . MET 232 232 ? A -10.284 24.186 -4.966 1 1 A MET 0.440 1
ATOM 244 N N . SER 233 233 ? A -8.117 29.418 -6.951 1 1 A SER 0.430 1
ATOM 245 C CA . SER 233 233 ? A -7.742 30.705 -6.358 1 1 A SER 0.430 1
ATOM 246 C C . SER 233 233 ? A -8.783 31.806 -6.569 1 1 A SER 0.430 1
ATOM 247 O O . SER 233 233 ? A -8.756 32.829 -5.902 1 1 A SER 0.430 1
ATOM 248 C CB . SER 233 233 ? A -6.403 31.221 -6.972 1 1 A SER 0.430 1
ATOM 249 O OG . SER 233 233 ? A -5.804 32.295 -6.244 1 1 A SER 0.430 1
ATOM 250 N N . GLY 234 234 ? A -9.699 31.602 -7.545 1 1 A GLY 0.350 1
ATOM 251 C CA . GLY 234 234 ? A -10.836 32.476 -7.808 1 1 A GLY 0.350 1
ATOM 252 C C . GLY 234 234 ? A -11.959 32.558 -6.761 1 1 A GLY 0.350 1
ATOM 253 O O . GLY 234 234 ? A -11.978 31.795 -5.763 1 1 A GLY 0.350 1
ATOM 254 O OXT . GLY 234 234 ? A -12.860 33.411 -7.002 1 1 A GLY 0.350 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.592
2 1 3 0.036
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 199 LYS 1 0.280
2 1 A 200 ASP 1 0.330
3 1 A 201 GLY 1 0.310
4 1 A 202 LEU 1 0.230
5 1 A 203 SER 1 0.200
6 1 A 204 THR 1 0.430
7 1 A 205 VAL 1 0.510
8 1 A 206 THR 1 0.580
9 1 A 207 LEU 1 0.590
10 1 A 208 VAL 1 0.610
11 1 A 209 GLY 1 0.690
12 1 A 210 ILE 1 0.690
13 1 A 211 ILE 1 0.700
14 1 A 212 VAL 1 0.730
15 1 A 213 GLY 1 0.720
16 1 A 214 VAL 1 0.730
17 1 A 215 LEU 1 0.730
18 1 A 216 LEU 1 0.730
19 1 A 217 ALA 1 0.740
20 1 A 218 ILE 1 0.720
21 1 A 219 GLY 1 0.730
22 1 A 220 PHE 1 0.710
23 1 A 221 ILE 1 0.730
24 1 A 222 GLY 1 0.730
25 1 A 223 ALA 1 0.740
26 1 A 224 ILE 1 0.720
27 1 A 225 ILE 1 0.710
28 1 A 226 VAL 1 0.710
29 1 A 227 VAL 1 0.700
30 1 A 228 VAL 1 0.690
31 1 A 229 MET 1 0.610
32 1 A 230 ARG 1 0.530
33 1 A 231 LYS 1 0.550
34 1 A 232 MET 1 0.440
35 1 A 233 SER 1 0.430
36 1 A 234 GLY 1 0.350
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
1 license
;This SWISS-MODEL protein model is copyright.
It is produced by the SWISS-MODEL server, developed by the Computational
Structural Biology Group at the SIB Swiss Institute of Bioinformatics at the
Biozentrum, University of Basel (https://swissmodel.expasy.org). This
model is licensed under the CC BY-SA 4.0 Creative Commons
Attribution-ShareAlike 4.0 International License
(https://creativecommons.org/licenses/by-sa/4.0/legalcode), i.e. you
can copy and redistribute the model in any medium or format,
transform and build upon the model for any purpose, even
commercially, under the following terms:
Attribution - You must give appropriate credit, provide a link to
the license, and indicate if changes were made. You may do so in any
reasonable manner, but not in any way that suggests the licensor
endorses you or your use. When you publish, patent or distribute
results that were fully or partially based on the model, please cite
the corresponding papers mentioned under JRNL.
ShareAlike - If you remix, transform, or build upon the material,
you must distribute your contributions under the same license as the
original.
No additional restrictions - you may not apply legal terms or
technological measures that legally restrict others from doing
anything the license permits.
Find a human-readable summary of (and not a substitute for) the
CC BY-SA 4.0 license at this link:
https://creativecommons.org/licenses/by-sa/4.0/
;
https://creativecommons.org/licenses/by-sa/4.0/legalcode
2 disclaimer
;The SWISS-MODEL SERVER produces theoretical models for
proteins. The results of any theoretical modelling procedure is
NON-EXPERIMENTAL and MUST be considered with care. These models may
contain significant errors. This is especially true for automated
modeling since there is no human intervention during model
building. Please read the header section and the logfile carefully
to know what templates and alignments were used during the model
building process. All information by the SWISS-MODEL SERVER is
provided "AS-IS", without any warranty, expressed or implied.
;
https://swissmodel.expasy.org/docs/terms_of_use#disclaimer
#