data_SMR-6ff07f4deeaf3ba4995f1d3158a97d24_1
_entry.id SMR-6ff07f4deeaf3ba4995f1d3158a97d24_1
_struct.entry_id SMR-6ff07f4deeaf3ba4995f1d3158a97d24_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - Q86YL7/ PDPN_HUMAN, Podoplanin

Estimated model accuracy of this model is 0.036, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries Q86YL7'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 28905.863 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP PDPN_HUMAN Q86YL7 1
;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRP
;
Podoplanin
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 236 1 236
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . PDPN_HUMAN Q86YL7 Q86YL7-2 1 236 9606 'Homo sapiens (Human)' 2008-11-25
5D85583198FCE2C3
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no D
;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRP
;

;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRP
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 LEU .
1 3 THR .
1 4 PRO .
1 5 LEU .
1 6 GLY .
1 7 LYS .
1 8 PHE .
1 9 SER .
1 10 THR .
1 11 ALA .
1 12 LYS .
1 13 PHE .
1 14 ALA .
1 15 VAL .
1 16 ARG .
1 17 LEU .
1 18 PRO .
1 19 ARG .
1 20 VAL .
1 21 TRP .
1 22 GLU .
1 23 ALA .
1 24 ARG .
1 25 ALA .
1 26 PRO .
1 27 SER .
1 28 LEU .
1 29 SER .
1 30 GLY .
1 31 ALA .
1 32 PRO .
1 33 ALA .
1 34 PRO .
1 35 THR .
1 36 PRO .
1 37 PRO .
1 38 ALA .
1 39 PRO .
1 40 PRO .
1 41 PRO .
1 42 SER .
1 43 ARG .
1 44 SER .
1 45 SER .
1 46 ARG .
1 47 LEU .
1 48 GLY .
1 49 LEU .
1 50 TRP .
1 51 PRO .
1 52 ARG .
1 53 CYS .
1 54 PHE .
1 55 LEU .
1 56 ILE .
1 57 PHE .
1 58 PRO .
1 59 GLN .
1 60 LEU .
1 61 ARG .
1 62 ILE .
1 63 LEU .
1 64 LEU .
1 65 LEU .
1 66 GLY .
1 67 PRO .
1 68 GLN .
1 69 GLU .
1 70 SER .
1 71 ASN .
1 72 ASN .
1 73 SER .
1 74 THR .
1 75 GLY .
1 76 THR .
1 77 MET .
1 78 TRP .
1 79 LYS .
1 80 VAL .
1 81 SER .
1 82 ALA .
1 83 LEU .
1 84 LEU .
1 85 PHE .
1 86 VAL .
1 87 LEU .
1 88 GLY .
1 89 SER .
1 90 ALA .
1 91 SER .
1 92 LEU .
1 93 TRP .
1 94 VAL .
1 95 LEU .
1 96 ALA .
1 97 GLU .
1 98 GLY .
1 99 ALA .
1 100 SER .
1 101 THR .
1 102 GLY .
1 103 GLN .
1 104 PRO .
1 105 GLU .
1 106 ASP .
1 107 ASP .
1 108 THR .
1 109 GLU .
1 110 THR .
1 111 THR .
1 112 GLY .
1 113 LEU .
1 114 GLU .
1 115 GLY .
1 116 GLY .
1 117 VAL .
1 118 ALA .
1 119 MET .
1 120 PRO .
1 121 GLY .
1 122 ALA .
1 123 GLU .
1 124 ASP .
1 125 ASP .
1 126 VAL .
1 127 VAL .
1 128 THR .
1 129 PRO .
1 130 GLY .
1 131 THR .
1 132 SER .
1 133 GLU .
1 134 ASP .
1 135 ARG .
1 136 TYR .
1 137 LYS .
1 138 SER .
1 139 GLY .
1 140 LEU .
1 141 THR .
1 142 THR .
1 143 LEU .
1 144 VAL .
1 145 ALA .
1 146 THR .
1 147 SER .
1 148 VAL .
1 149 ASN .
1 150 SER .
1 151 VAL .
1 152 THR .
1 153 GLY .
1 154 ILE .
1 155 ARG .
1 156 ILE .
1 157 GLU .
1 158 ASP .
1 159 LEU .
1 160 PRO .
1 161 THR .
1 162 SER .
1 163 GLU .
1 164 SER .
1 165 THR .
1 166 VAL .
1 167 HIS .
1 168 ALA .
1 169 GLN .
1 170 GLU .
1 171 GLN .
1 172 SER .
1 173 PRO .
1 174 SER .
1 175 ALA .
1 176 THR .
1 177 ALA .
1 178 SER .
1 179 ASN .
1 180 VAL .
1 181 ALA .
1 182 THR .
1 183 SER .
1 184 HIS .
1 185 SER .
1 186 THR .
1 187 GLU .
1 188 LYS .
1 189 VAL .
1 190 ASP .
1 191 GLY .
1 192 ASP .
1 193 THR .
1 194 GLN .
1 195 THR .
1 196 THR .
1 197 VAL .
1 198 GLU .
1 199 LYS .
1 200 ASP .
1 201 GLY .
1 202 LEU .
1 203 SER .
1 204 THR .
1 205 VAL .
1 206 THR .
1 207 LEU .
1 208 VAL .
1 209 GLY .
1 210 ILE .
1 211 ILE .
1 212 VAL .
1 213 GLY .
1 214 VAL .
1 215 LEU .
1 216 LEU .
1 217 ALA .
1 218 ILE .
1 219 GLY .
1 220 PHE .
1 221 ILE .
1 222 GLY .
1 223 ALA .
1 224 ILE .
1 225 ILE .
1 226 VAL .
1 227 VAL .
1 228 VAL .
1 229 MET .
1 230 ARG .
1 231 LYS .
1 232 MET .
1 233 SER .
1 234 GLY .
1 235 ARG .
1 236 PRO .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? D .
A 1 2 LEU 2 ? ? ? D .
A 1 3 THR 3 ? ? ? D .
A 1 4 PRO 4 ? ? ? D .
A 1 5 LEU 5 ? ? ? D .
A 1 6 GLY 6 ? ? ? D .
A 1 7 LYS 7 ? ? ? D .
A 1 8 PHE 8 ? ? ? D .
A 1 9 SER 9 ? ? ? D .
A 1 10 THR 10 ? ? ? D .
A 1 11 ALA 11 ? ? ? D .
A 1 12 LYS 12 ? ? ? D .
A 1 13 PHE 13 ? ? ? D .
A 1 14 ALA 14 ? ? ? D .
A 1 15 VAL 15 ? ? ? D .
A 1 16 ARG 16 ? ? ? D .
A 1 17 LEU 17 ? ? ? D .
A 1 18 PRO 18 ? ? ? D .
A 1 19 ARG 19 ? ? ? D .
A 1 20 VAL 20 ? ? ? D .
A 1 21 TRP 21 ? ? ? D .
A 1 22 GLU 22 ? ? ? D .
A 1 23 ALA 23 ? ? ? D .
A 1 24 ARG 24 ? ? ? D .
A 1 25 ALA 25 ? ? ? D .
A 1 26 PRO 26 ? ? ? D .
A 1 27 SER 27 ? ? ? D .
A 1 28 LEU 28 ? ? ? D .
A 1 29 SER 29 ? ? ? D .
A 1 30 GLY 30 ? ? ? D .
A 1 31 ALA 31 ? ? ? D .
A 1 32 PRO 32 ? ? ? D .
A 1 33 ALA 33 ? ? ? D .
A 1 34 PRO 34 ? ? ? D .
A 1 35 THR 35 ? ? ? D .
A 1 36 PRO 36 ? ? ? D .
A 1 37 PRO 37 ? ? ? D .
A 1 38 ALA 38 ? ? ? D .
A 1 39 PRO 39 ? ? ? D .
A 1 40 PRO 40 ? ? ? D .
A 1 41 PRO 41 ? ? ? D .
A 1 42 SER 42 ? ? ? D .
A 1 43 ARG 43 ? ? ? D .
A 1 44 SER 44 ? ? ? D .
A 1 45 SER 45 ? ? ? D .
A 1 46 ARG 46 ? ? ? D .
A 1 47 LEU 47 ? ? ? D .
A 1 48 GLY 48 ? ? ? D .
A 1 49 LEU 49 ? ? ? D .
A 1 50 TRP 50 ? ? ? D .
A 1 51 PRO 51 ? ? ? D .
A 1 52 ARG 52 ? ? ? D .
A 1 53 CYS 53 ? ? ? D .
A 1 54 PHE 54 ? ? ? D .
A 1 55 LEU 55 ? ? ? D .
A 1 56 ILE 56 ? ? ? D .
A 1 57 PHE 57 ? ? ? D .
A 1 58 PRO 58 ? ? ? D .
A 1 59 GLN 59 ? ? ? D .
A 1 60 LEU 60 ? ? ? D .
A 1 61 ARG 61 ? ? ? D .
A 1 62 ILE 62 ? ? ? D .
A 1 63 LEU 63 ? ? ? D .
A 1 64 LEU 64 ? ? ? D .
A 1 65 LEU 65 ? ? ? D .
A 1 66 GLY 66 ? ? ? D .
A 1 67 PRO 67 ? ? ? D .
A 1 68 GLN 68 ? ? ? D .
A 1 69 GLU 69 ? ? ? D .
A 1 70 SER 70 ? ? ? D .
A 1 71 ASN 71 ? ? ? D .
A 1 72 ASN 72 ? ? ? D .
A 1 73 SER 73 ? ? ? D .
A 1 74 THR 74 ? ? ? D .
A 1 75 GLY 75 ? ? ? D .
A 1 76 THR 76 ? ? ? D .
A 1 77 MET 77 ? ? ? D .
A 1 78 TRP 78 ? ? ? D .
A 1 79 LYS 79 ? ? ? D .
A 1 80 VAL 80 ? ? ? D .
A 1 81 SER 81 ? ? ? D .
A 1 82 ALA 82 ? ? ? D .
A 1 83 LEU 83 ? ? ? D .
A 1 84 LEU 84 ? ? ? D .
A 1 85 PHE 85 ? ? ? D .
A 1 86 VAL 86 ? ? ? D .
A 1 87 LEU 87 ? ? ? D .
A 1 88 GLY 88 ? ? ? D .
A 1 89 SER 89 ? ? ? D .
A 1 90 ALA 90 ? ? ? D .
A 1 91 SER 91 ? ? ? D .
A 1 92 LEU 92 ? ? ? D .
A 1 93 TRP 93 ? ? ? D .
A 1 94 VAL 94 ? ? ? D .
A 1 95 LEU 95 ? ? ? D .
A 1 96 ALA 96 ? ? ? D .
A 1 97 GLU 97 ? ? ? D .
A 1 98 GLY 98 ? ? ? D .
A 1 99 ALA 99 ? ? ? D .
A 1 100 SER 100 ? ? ? D .
A 1 101 THR 101 ? ? ? D .
A 1 102 GLY 102 ? ? ? D .
A 1 103 GLN 103 ? ? ? D .
A 1 104 PRO 104 ? ? ? D .
A 1 105 GLU 105 ? ? ? D .
A 1 106 ASP 106 ? ? ? D .
A 1 107 ASP 107 ? ? ? D .
A 1 108 THR 108 ? ? ? D .
A 1 109 GLU 109 ? ? ? D .
A 1 110 THR 110 ? ? ? D .
A 1 111 THR 111 ? ? ? D .
A 1 112 GLY 112 ? ? ? D .
A 1 113 LEU 113 ? ? ? D .
A 1 114 GLU 114 ? ? ? D .
A 1 115 GLY 115 ? ? ? D .
A 1 116 GLY 116 ? ? ? D .
A 1 117 VAL 117 ? ? ? D .
A 1 118 ALA 118 ? ? ? D .
A 1 119 MET 119 ? ? ? D .
A 1 120 PRO 120 ? ? ? D .
A 1 121 GLY 121 ? ? ? D .
A 1 122 ALA 122 ? ? ? D .
A 1 123 GLU 123 ? ? ? D .
A 1 124 ASP 124 ? ? ? D .
A 1 125 ASP 125 ? ? ? D .
A 1 126 VAL 126 ? ? ? D .
A 1 127 VAL 127 ? ? ? D .
A 1 128 THR 128 ? ? ? D .
A 1 129 PRO 129 ? ? ? D .
A 1 130 GLY 130 ? ? ? D .
A 1 131 THR 131 ? ? ? D .
A 1 132 SER 132 ? ? ? D .
A 1 133 GLU 133 ? ? ? D .
A 1 134 ASP 134 ? ? ? D .
A 1 135 ARG 135 ? ? ? D .
A 1 136 TYR 136 ? ? ? D .
A 1 137 LYS 137 ? ? ? D .
A 1 138 SER 138 ? ? ? D .
A 1 139 GLY 139 ? ? ? D .
A 1 140 LEU 140 ? ? ? D .
A 1 141 THR 141 ? ? ? D .
A 1 142 THR 142 ? ? ? D .
A 1 143 LEU 143 ? ? ? D .
A 1 144 VAL 144 ? ? ? D .
A 1 145 ALA 145 ? ? ? D .
A 1 146 THR 146 ? ? ? D .
A 1 147 SER 147 ? ? ? D .
A 1 148 VAL 148 ? ? ? D .
A 1 149 ASN 149 ? ? ? D .
A 1 150 SER 150 ? ? ? D .
A 1 151 VAL 151 ? ? ? D .
A 1 152 THR 152 ? ? ? D .
A 1 153 GLY 153 ? ? ? D .
A 1 154 ILE 154 ? ? ? D .
A 1 155 ARG 155 ? ? ? D .
A 1 156 ILE 156 ? ? ? D .
A 1 157 GLU 157 ? ? ? D .
A 1 158 ASP 158 ? ? ? D .
A 1 159 LEU 159 ? ? ? D .
A 1 160 PRO 160 ? ? ? D .
A 1 161 THR 161 ? ? ? D .
A 1 162 SER 162 ? ? ? D .
A 1 163 GLU 163 ? ? ? D .
A 1 164 SER 164 ? ? ? D .
A 1 165 THR 165 ? ? ? D .
A 1 166 VAL 166 ? ? ? D .
A 1 167 HIS 167 ? ? ? D .
A 1 168 ALA 168 ? ? ? D .
A 1 169 GLN 169 ? ? ? D .
A 1 170 GLU 170 ? ? ? D .
A 1 171 GLN 171 ? ? ? D .
A 1 172 SER 172 ? ? ? D .
A 1 173 PRO 173 ? ? ? D .
A 1 174 SER 174 ? ? ? D .
A 1 175 ALA 175 ? ? ? D .
A 1 176 THR 176 ? ? ? D .
A 1 177 ALA 177 ? ? ? D .
A 1 178 SER 178 ? ? ? D .
A 1 179 ASN 179 ? ? ? D .
A 1 180 VAL 180 ? ? ? D .
A 1 181 ALA 181 ? ? ? D .
A 1 182 THR 182 ? ? ? D .
A 1 183 SER 183 ? ? ? D .
A 1 184 HIS 184 ? ? ? D .
A 1 185 SER 185 ? ? ? D .
A 1 186 THR 186 ? ? ? D .
A 1 187 GLU 187 ? ? ? D .
A 1 188 LYS 188 ? ? ? D .
A 1 189 VAL 189 ? ? ? D .
A 1 190 ASP 190 ? ? ? D .
A 1 191 GLY 191 ? ? ? D .
A 1 192 ASP 192 ? ? ? D .
A 1 193 THR 193 ? ? ? D .
A 1 194 GLN 194 ? ? ? D .
A 1 195 THR 195 ? ? ? D .
A 1 196 THR 196 ? ? ? D .
A 1 197 VAL 197 ? ? ? D .
A 1 198 GLU 198 ? ? ? D .
A 1 199 LYS 199 ? ? ? D .
A 1 200 ASP 200 200 ASP ASP D .
A 1 201 GLY 201 201 GLY GLY D .
A 1 202 LEU 202 202 LEU LEU D .
A 1 203 SER 203 203 SER SER D .
A 1 204 THR 204 204 THR THR D .
A 1 205 VAL 205 205 VAL VAL D .
A 1 206 THR 206 206 THR THR D .
A 1 207 LEU 207 207 LEU LEU D .
A 1 208 VAL 208 208 VAL VAL D .
A 1 209 GLY 209 209 GLY GLY D .
A 1 210 ILE 210 210 ILE ILE D .
A 1 211 ILE 211 211 ILE ILE D .
A 1 212 VAL 212 212 VAL VAL D .
A 1 213 GLY 213 213 GLY GLY D .
A 1 214 VAL 214 214 VAL VAL D .
A 1 215 LEU 215 215 LEU LEU D .
A 1 216 LEU 216 216 LEU LEU D .
A 1 217 ALA 217 217 ALA ALA D .
A 1 218 ILE 218 218 ILE ILE D .
A 1 219 GLY 219 219 GLY GLY D .
A 1 220 PHE 220 220 PHE PHE D .
A 1 221 ILE 221 221 ILE ILE D .
A 1 222 GLY 222 222 GLY GLY D .
A 1 223 ALA 223 223 ALA ALA D .
A 1 224 ILE 224 224 ILE ILE D .
A 1 225 ILE 225 225 ILE ILE D .
A 1 226 VAL 226 226 VAL VAL D .
A 1 227 VAL 227 227 VAL VAL D .
A 1 228 VAL 228 228 VAL VAL D .
A 1 229 MET 229 229 MET MET D .
A 1 230 ARG 230 230 ARG ARG D .
A 1 231 LYS 231 231 LYS LYS D .
A 1 232 MET 232 232 MET MET D .
A 1 233 SER 233 ? ? ? D .
A 1 234 GLY 234 ? ? ? D .
A 1 235 ARG 235 ? ? ? D .
A 1 236 PRO 236 ? ? ? D .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'T-cell surface glycoprotein CD3 delta chain, green fluorescent protein {PDB ID=7phr, label_asym_id=D, auth_asym_id=D, SMTL ID=7phr.1.D}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 7phr, label_asym_id=D'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-14
6 PDB https://www.wwpdb.org . 2024-11-08
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A D 4 1 D
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1
;FKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYR
MCQSCVELDPATVAGIIVTDVIATLLLALGVFCFAGHETGRDPPVATMVSKGEELFTGVVPILVELDGDV
NGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLSYGVQCFSRYPDHMKQHDFFKSAMPEGY
VQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLG
MDELYK
;

;FKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYR
MCQSCVELDPATVAGIIVTDVIATLLLALGVFCFAGHETGRDPPVATMVSKGEELFTGVVPILVELDGDV
NGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLSYGVQCFSRYPDHMKQHDFFKSAMPEGY
VQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLG
MDELYK
;

#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 76 112
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 7phr 2024-11-13
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 236
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 236 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 0.012 24.324
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQESNNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGRP
2 1 2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VELDPATVAGIIVTDVIATLLLALGVFCFAGHETGRD
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 7phr.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ASP 200 200 ? A 195.995 194.638 200.009 1 1 D ASP 0.260 1
ATOM 2 C CA . ASP 200 200 ? A 195.535 195.740 199.105 1 1 D ASP 0.260 1
ATOM 3 C C . ASP 200 200 ? A 194.100 196.082 199.392 1 1 D ASP 0.260 1
ATOM 4 O O . ASP 200 200 ? A 193.295 195.191 199.629 1 1 D ASP 0.260 1
ATOM 5 C CB . ASP 200 200 ? A 195.768 195.282 197.645 1 1 D ASP 0.260 1
ATOM 6 C CG . ASP 200 200 ? A 197.276 195.119 197.459 1 1 D ASP 0.260 1
ATOM 7 O OD1 . ASP 200 200 ? A 197.990 195.357 198.470 1 1 D ASP 0.260 1
ATOM 8 O OD2 . ASP 200 200 ? A 197.685 194.678 196.370 1 1 D ASP 0.260 1
ATOM 9 N N . GLY 201 201 ? A 193.748 197.392 199.425 1 1 D GLY 0.370 1
ATOM 10 C CA . GLY 201 201 ? A 192.360 197.814 199.576 1 1 D GLY 0.370 1
ATOM 11 C C . GLY 201 201 ? A 191.619 197.606 198.291 1 1 D GLY 0.370 1
ATOM 12 O O . GLY 201 201 ? A 191.599 198.457 197.407 1 1 D GLY 0.370 1
ATOM 13 N N . LEU 202 202 ? A 191.012 196.426 198.159 1 1 D LEU 0.300 1
ATOM 14 C CA . LEU 202 202 ? A 190.532 195.928 196.902 1 1 D LEU 0.300 1
ATOM 15 C C . LEU 202 202 ? A 189.073 195.595 197.091 1 1 D LEU 0.300 1
ATOM 16 O O . LEU 202 202 ? A 188.701 194.533 197.581 1 1 D LEU 0.300 1
ATOM 17 C CB . LEU 202 202 ? A 191.386 194.688 196.547 1 1 D LEU 0.300 1
ATOM 18 C CG . LEU 202 202 ? A 191.130 194.039 195.177 1 1 D LEU 0.300 1
ATOM 19 C CD1 . LEU 202 202 ? A 191.446 194.982 194.006 1 1 D LEU 0.300 1
ATOM 20 C CD2 . LEU 202 202 ? A 191.966 192.757 195.048 1 1 D LEU 0.300 1
ATOM 21 N N . SER 203 203 ? A 188.197 196.552 196.733 1 1 D SER 0.400 1
ATOM 22 C CA . SER 203 203 ? A 186.768 196.341 196.731 1 1 D SER 0.400 1
ATOM 23 C C . SER 203 203 ? A 186.317 195.335 195.702 1 1 D SER 0.400 1
ATOM 24 O O . SER 203 203 ? A 186.966 195.072 194.693 1 1 D SER 0.400 1
ATOM 25 C CB . SER 203 203 ? A 185.895 197.646 196.693 1 1 D SER 0.400 1
ATOM 26 O OG . SER 203 203 ? A 185.552 198.111 195.386 1 1 D SER 0.400 1
ATOM 27 N N . THR 204 204 ? A 185.145 194.735 195.937 1 1 D THR 0.540 1
ATOM 28 C CA . THR 204 204 ? A 184.460 193.919 194.945 1 1 D THR 0.540 1
ATOM 29 C C . THR 204 204 ? A 184.184 194.700 193.666 1 1 D THR 0.540 1
ATOM 30 O O . THR 204 204 ? A 184.371 194.194 192.562 1 1 D THR 0.540 1
ATOM 31 C CB . THR 204 204 ? A 183.160 193.385 195.521 1 1 D THR 0.540 1
ATOM 32 O OG1 . THR 204 204 ? A 183.456 192.609 196.674 1 1 D THR 0.540 1
ATOM 33 C CG2 . THR 204 204 ? A 182.413 192.481 194.535 1 1 D THR 0.540 1
ATOM 34 N N . VAL 205 205 ? A 183.785 195.985 193.773 1 1 D VAL 0.550 1
ATOM 35 C CA . VAL 205 205 ? A 183.567 196.889 192.649 1 1 D VAL 0.550 1
ATOM 36 C C . VAL 205 205 ? A 184.840 197.160 191.857 1 1 D VAL 0.550 1
ATOM 37 O O . VAL 205 205 ? A 184.840 197.115 190.620 1 1 D VAL 0.550 1
ATOM 38 C CB . VAL 205 205 ? A 182.964 198.210 193.133 1 1 D VAL 0.550 1
ATOM 39 C CG1 . VAL 205 205 ? A 182.808 199.233 191.988 1 1 D VAL 0.550 1
ATOM 40 C CG2 . VAL 205 205 ? A 181.595 197.936 193.787 1 1 D VAL 0.550 1
ATOM 41 N N . THR 206 206 ? A 185.982 197.412 192.534 1 1 D THR 0.560 1
ATOM 42 C CA . THR 206 206 ? A 187.280 197.604 191.885 1 1 D THR 0.560 1
ATOM 43 C C . THR 206 206 ? A 187.754 196.345 191.193 1 1 D THR 0.560 1
ATOM 44 O O . THR 206 206 ? A 188.236 196.406 190.068 1 1 D THR 0.560 1
ATOM 45 C CB . THR 206 206 ? A 188.430 198.126 192.759 1 1 D THR 0.560 1
ATOM 46 O OG1 . THR 206 206 ? A 188.693 197.330 193.895 1 1 D THR 0.560 1
ATOM 47 C CG2 . THR 206 206 ? A 188.145 199.518 193.330 1 1 D THR 0.560 1
ATOM 48 N N . LEU 207 207 ? A 187.565 195.161 191.815 1 1 D LEU 0.560 1
ATOM 49 C CA . LEU 207 207 ? A 187.834 193.875 191.186 1 1 D LEU 0.560 1
ATOM 50 C C . LEU 207 207 ? A 187.038 193.663 189.908 1 1 D LEU 0.560 1
ATOM 51 O O . LEU 207 207 ? A 187.605 193.318 188.868 1 1 D LEU 0.560 1
ATOM 52 C CB . LEU 207 207 ? A 187.485 192.708 192.146 1 1 D LEU 0.560 1
ATOM 53 C CG . LEU 207 207 ? A 187.711 191.287 191.579 1 1 D LEU 0.560 1
ATOM 54 C CD1 . LEU 207 207 ? A 189.190 191.027 191.261 1 1 D LEU 0.560 1
ATOM 55 C CD2 . LEU 207 207 ? A 187.163 190.211 192.529 1 1 D LEU 0.560 1
ATOM 56 N N . VAL 208 208 ? A 185.718 193.933 189.920 1 1 D VAL 0.630 1
ATOM 57 C CA . VAL 208 208 ? A 184.864 193.855 188.738 1 1 D VAL 0.630 1
ATOM 58 C C . VAL 208 208 ? A 185.331 194.806 187.648 1 1 D VAL 0.630 1
ATOM 59 O O . VAL 208 208 ? A 185.472 194.417 186.488 1 1 D VAL 0.630 1
ATOM 60 C CB . VAL 208 208 ? A 183.402 194.138 189.085 1 1 D VAL 0.630 1
ATOM 61 C CG1 . VAL 208 208 ? A 182.511 194.249 187.828 1 1 D VAL 0.630 1
ATOM 62 C CG2 . VAL 208 208 ? A 182.861 192.998 189.969 1 1 D VAL 0.630 1
ATOM 63 N N . GLY 209 209 ? A 185.656 196.067 188.001 1 1 D GLY 0.680 1
ATOM 64 C CA . GLY 209 209 ? A 186.120 197.058 187.035 1 1 D GLY 0.680 1
ATOM 65 C C . GLY 209 209 ? A 187.462 196.746 186.420 1 1 D GLY 0.680 1
ATOM 66 O O . GLY 209 209 ? A 187.657 196.942 185.217 1 1 D GLY 0.680 1
ATOM 67 N N . ILE 210 210 ? A 188.413 196.209 187.213 1 1 D ILE 0.640 1
ATOM 68 C CA . ILE 210 210 ? A 189.694 195.717 186.717 1 1 D ILE 0.640 1
ATOM 69 C C . ILE 210 210 ? A 189.504 194.552 185.771 1 1 D ILE 0.640 1
ATOM 70 O O . ILE 210 210 ? A 189.995 194.586 184.644 1 1 D ILE 0.640 1
ATOM 71 C CB . ILE 210 210 ? A 190.657 195.317 187.848 1 1 D ILE 0.640 1
ATOM 72 C CG1 . ILE 210 210 ? A 191.121 196.589 188.599 1 1 D ILE 0.640 1
ATOM 73 C CG2 . ILE 210 210 ? A 191.875 194.513 187.314 1 1 D ILE 0.640 1
ATOM 74 C CD1 . ILE 210 210 ? A 192.060 196.325 189.785 1 1 D ILE 0.640 1
ATOM 75 N N . ILE 211 211 ? A 188.732 193.513 186.161 1 1 D ILE 0.700 1
ATOM 76 C CA . ILE 211 211 ? A 188.533 192.341 185.316 1 1 D ILE 0.700 1
ATOM 77 C C . ILE 211 211 ? A 187.844 192.707 184.018 1 1 D ILE 0.700 1
ATOM 78 O O . ILE 211 211 ? A 188.305 192.326 182.937 1 1 D ILE 0.700 1
ATOM 79 C CB . ILE 211 211 ? A 187.787 191.215 186.034 1 1 D ILE 0.700 1
ATOM 80 C CG1 . ILE 211 211 ? A 188.620 190.726 187.244 1 1 D ILE 0.700 1
ATOM 81 C CG2 . ILE 211 211 ? A 187.503 190.043 185.060 1 1 D ILE 0.700 1
ATOM 82 C CD1 . ILE 211 211 ? A 187.935 189.628 188.065 1 1 D ILE 0.700 1
ATOM 83 N N . VAL 212 212 ? A 186.773 193.523 184.065 1 1 D VAL 0.690 1
ATOM 84 C CA . VAL 212 212 ? A 186.073 193.984 182.874 1 1 D VAL 0.690 1
ATOM 85 C C . VAL 212 212 ? A 186.977 194.780 181.945 1 1 D VAL 0.690 1
ATOM 86 O O . VAL 212 212 ? A 187.037 194.507 180.747 1 1 D VAL 0.690 1
ATOM 87 C CB . VAL 212 212 ? A 184.822 194.782 183.240 1 1 D VAL 0.690 1
ATOM 88 C CG1 . VAL 212 212 ? A 184.208 195.519 182.030 1 1 D VAL 0.690 1
ATOM 89 C CG2 . VAL 212 212 ? A 183.785 193.803 183.826 1 1 D VAL 0.690 1
ATOM 90 N N . GLY 213 213 ? A 187.770 195.740 182.471 1 1 D GLY 0.680 1
ATOM 91 C CA . GLY 213 213 ? A 188.660 196.544 181.637 1 1 D GLY 0.680 1
ATOM 92 C C . GLY 213 213 ? A 189.792 195.770 181.010 1 1 D GLY 0.680 1
ATOM 93 O O . GLY 213 213 ? A 190.168 196.020 179.862 1 1 D GLY 0.680 1
ATOM 94 N N . VAL 214 214 ? A 190.341 194.773 181.729 1 1 D VAL 0.660 1
ATOM 95 C CA . VAL 214 214 ? A 191.316 193.830 181.193 1 1 D VAL 0.660 1
ATOM 96 C C . VAL 214 214 ? A 190.713 192.977 180.083 1 1 D VAL 0.660 1
ATOM 97 O O . VAL 214 214 ? A 191.289 192.865 179.003 1 1 D VAL 0.660 1
ATOM 98 C CB . VAL 214 214 ? A 191.940 192.963 182.289 1 1 D VAL 0.660 1
ATOM 99 C CG1 . VAL 214 214 ? A 192.883 191.893 181.705 1 1 D VAL 0.660 1
ATOM 100 C CG2 . VAL 214 214 ? A 192.761 193.869 183.227 1 1 D VAL 0.660 1
ATOM 101 N N . LEU 215 215 ? A 189.500 192.412 180.274 1 1 D LEU 0.690 1
ATOM 102 C CA . LEU 215 215 ? A 188.806 191.640 179.249 1 1 D LEU 0.690 1
ATOM 103 C C . LEU 215 215 ? A 188.508 192.441 177.990 1 1 D LEU 0.690 1
ATOM 104 O O . LEU 215 215 ? A 188.694 191.957 176.869 1 1 D LEU 0.690 1
ATOM 105 C CB . LEU 215 215 ? A 187.481 191.048 179.786 1 1 D LEU 0.690 1
ATOM 106 C CG . LEU 215 215 ? A 187.648 189.940 180.846 1 1 D LEU 0.690 1
ATOM 107 C CD1 . LEU 215 215 ? A 186.281 189.591 181.454 1 1 D LEU 0.690 1
ATOM 108 C CD2 . LEU 215 215 ? A 188.336 188.684 180.288 1 1 D LEU 0.690 1
ATOM 109 N N . LEU 216 216 ? A 188.081 193.707 178.139 1 1 D LEU 0.690 1
ATOM 110 C CA . LEU 216 216 ? A 187.900 194.628 177.031 1 1 D LEU 0.690 1
ATOM 111 C C . LEU 216 216 ? A 189.184 194.926 176.266 1 1 D LEU 0.690 1
ATOM 112 O O . LEU 216 216 ? A 189.200 194.903 175.034 1 1 D LEU 0.690 1
ATOM 113 C CB . LEU 216 216 ? A 187.281 195.958 177.517 1 1 D LEU 0.690 1
ATOM 114 C CG . LEU 216 216 ? A 185.826 195.845 178.015 1 1 D LEU 0.690 1
ATOM 115 C CD1 . LEU 216 216 ? A 185.383 197.169 178.656 1 1 D LEU 0.690 1
ATOM 116 C CD2 . LEU 216 216 ? A 184.856 195.431 176.897 1 1 D LEU 0.690 1
ATOM 117 N N . ALA 217 217 ? A 190.311 195.170 176.965 1 1 D ALA 0.680 1
ATOM 118 C CA . ALA 217 217 ? A 191.614 195.339 176.347 1 1 D ALA 0.680 1
ATOM 119 C C . ALA 217 217 ? A 192.112 194.092 175.615 1 1 D ALA 0.680 1
ATOM 120 O O . ALA 217 217 ? A 192.626 194.175 174.496 1 1 D ALA 0.680 1
ATOM 121 C CB . ALA 217 217 ? A 192.647 195.783 177.401 1 1 D ALA 0.680 1
ATOM 122 N N . ILE 218 218 ? A 191.933 192.890 176.199 1 1 D ILE 0.680 1
ATOM 123 C CA . ILE 218 218 ? A 192.244 191.611 175.560 1 1 D ILE 0.680 1
ATOM 124 C C . ILE 218 218 ? A 191.408 191.383 174.306 1 1 D ILE 0.680 1
ATOM 125 O O . ILE 218 218 ? A 191.923 190.992 173.256 1 1 D ILE 0.680 1
ATOM 126 C CB . ILE 218 218 ? A 192.082 190.439 176.532 1 1 D ILE 0.680 1
ATOM 127 C CG1 . ILE 218 218 ? A 193.126 190.538 177.669 1 1 D ILE 0.680 1
ATOM 128 C CG2 . ILE 218 218 ? A 192.220 189.076 175.808 1 1 D ILE 0.680 1
ATOM 129 C CD1 . ILE 218 218 ? A 192.833 189.591 178.839 1 1 D ILE 0.680 1
ATOM 130 N N . GLY 219 219 ? A 190.090 191.664 174.348 1 1 D GLY 0.690 1
ATOM 131 C CA . GLY 219 219 ? A 189.231 191.561 173.170 1 1 D GLY 0.690 1
ATOM 132 C C . GLY 219 219 ? A 189.517 192.590 172.106 1 1 D GLY 0.690 1
ATOM 133 O O . GLY 219 219 ? A 189.348 192.322 170.916 1 1 D GLY 0.690 1
ATOM 134 N N . PHE 220 220 ? A 190.005 193.784 172.494 1 1 D PHE 0.660 1
ATOM 135 C CA . PHE 220 220 ? A 190.539 194.781 171.579 1 1 D PHE 0.660 1
ATOM 136 C C . PHE 220 220 ? A 191.773 194.257 170.847 1 1 D PHE 0.660 1
ATOM 137 O O . PHE 220 220 ? A 191.844 194.330 169.621 1 1 D PHE 0.660 1
ATOM 138 C CB . PHE 220 220 ? A 190.844 196.110 172.334 1 1 D PHE 0.660 1
ATOM 139 C CG . PHE 220 220 ? A 191.326 197.219 171.430 1 1 D PHE 0.660 1
ATOM 140 C CD1 . PHE 220 220 ? A 190.596 197.588 170.288 1 1 D PHE 0.660 1
ATOM 141 C CD2 . PHE 220 220 ? A 192.537 197.880 171.698 1 1 D PHE 0.660 1
ATOM 142 C CE1 . PHE 220 220 ? A 191.066 198.590 169.431 1 1 D PHE 0.660 1
ATOM 143 C CE2 . PHE 220 220 ? A 192.990 198.910 170.864 1 1 D PHE 0.660 1
ATOM 144 C CZ . PHE 220 220 ? A 192.256 199.262 169.725 1 1 D PHE 0.660 1
ATOM 145 N N . ILE 221 221 ? A 192.729 193.621 171.564 1 1 D ILE 0.650 1
ATOM 146 C CA . ILE 221 221 ? A 193.880 192.937 170.971 1 1 D ILE 0.650 1
ATOM 147 C C . ILE 221 221 ? A 193.433 191.837 170.027 1 1 D ILE 0.650 1
ATOM 148 O O . ILE 221 221 ? A 193.944 191.711 168.912 1 1 D ILE 0.650 1
ATOM 149 C CB . ILE 221 221 ? A 194.827 192.362 172.032 1 1 D ILE 0.650 1
ATOM 150 C CG1 . ILE 221 221 ? A 195.502 193.503 172.825 1 1 D ILE 0.650 1
ATOM 151 C CG2 . ILE 221 221 ? A 195.895 191.436 171.398 1 1 D ILE 0.650 1
ATOM 152 C CD1 . ILE 221 221 ? A 196.230 193.010 174.082 1 1 D ILE 0.650 1
ATOM 153 N N . GLY 222 222 ? A 192.421 191.039 170.422 1 1 D GLY 0.680 1
ATOM 154 C CA . GLY 222 222 ? A 191.839 190.013 169.567 1 1 D GLY 0.680 1
ATOM 155 C C . GLY 222 222 ? A 191.247 190.544 168.288 1 1 D GLY 0.680 1
ATOM 156 O O . GLY 222 222 ? A 191.498 189.998 167.217 1 1 D GLY 0.680 1
ATOM 157 N N . ALA 223 223 ? A 190.495 191.659 168.345 1 1 D ALA 0.710 1
ATOM 158 C CA . ALA 223 223 ? A 189.998 192.353 167.174 1 1 D ALA 0.710 1
ATOM 159 C C . ALA 223 223 ? A 191.115 192.876 166.276 1 1 D ALA 0.710 1
ATOM 160 O O . ALA 223 223 ? A 191.083 192.680 165.064 1 1 D ALA 0.710 1
ATOM 161 C CB . ALA 223 223 ? A 189.080 193.521 167.590 1 1 D ALA 0.710 1
ATOM 162 N N . ILE 224 224 ? A 192.163 193.502 166.857 1 1 D ILE 0.640 1
ATOM 163 C CA . ILE 224 224 ? A 193.333 193.978 166.121 1 1 D ILE 0.640 1
ATOM 164 C C . ILE 224 224 ? A 194.043 192.854 165.403 1 1 D ILE 0.640 1
ATOM 165 O O . ILE 224 224 ? A 194.259 192.926 164.194 1 1 D ILE 0.640 1
ATOM 166 C CB . ILE 224 224 ? A 194.332 194.682 167.042 1 1 D ILE 0.640 1
ATOM 167 C CG1 . ILE 224 224 ? A 193.717 195.987 167.573 1 1 D ILE 0.640 1
ATOM 168 C CG2 . ILE 224 224 ? A 195.681 194.990 166.339 1 1 D ILE 0.640 1
ATOM 169 C CD1 . ILE 224 224 ? A 194.509 196.558 168.749 1 1 D ILE 0.640 1
ATOM 170 N N . ILE 225 225 ? A 194.366 191.749 166.101 1 1 D ILE 0.650 1
ATOM 171 C CA . ILE 225 225 ? A 195.055 190.611 165.513 1 1 D ILE 0.650 1
ATOM 172 C C . ILE 225 225 ? A 194.226 189.975 164.412 1 1 D ILE 0.650 1
ATOM 173 O O . ILE 225 225 ? A 194.742 189.673 163.338 1 1 D ILE 0.650 1
ATOM 174 C CB . ILE 225 225 ? A 195.520 189.610 166.565 1 1 D ILE 0.650 1
ATOM 175 C CG1 . ILE 225 225 ? A 196.599 190.273 167.450 1 1 D ILE 0.650 1
ATOM 176 C CG2 . ILE 225 225 ? A 196.086 188.337 165.896 1 1 D ILE 0.650 1
ATOM 177 C CD1 . ILE 225 225 ? A 196.962 189.435 168.679 1 1 D ILE 0.650 1
ATOM 178 N N . VAL 226 226 ? A 192.900 189.835 164.607 1 1 D VAL 0.680 1
ATOM 179 C CA . VAL 226 226 ? A 191.986 189.372 163.573 1 1 D VAL 0.680 1
ATOM 180 C C . VAL 226 226 ? A 192.015 190.238 162.320 1 1 D VAL 0.680 1
ATOM 181 O O . VAL 226 226 ? A 192.114 189.720 161.204 1 1 D VAL 0.680 1
ATOM 182 C CB . VAL 226 226 ? A 190.559 189.313 164.113 1 1 D VAL 0.680 1
ATOM 183 C CG1 . VAL 226 226 ? A 189.509 189.210 162.995 1 1 D VAL 0.680 1
ATOM 184 C CG2 . VAL 226 226 ? A 190.422 188.077 165.017 1 1 D VAL 0.680 1
ATOM 185 N N . VAL 227 227 ? A 191.960 191.577 162.460 1 1 D VAL 0.680 1
ATOM 186 C CA . VAL 227 227 ? A 192.039 192.508 161.340 1 1 D VAL 0.680 1
ATOM 187 C C . VAL 227 227 ? A 193.374 192.412 160.620 1 1 D VAL 0.680 1
ATOM 188 O O . VAL 227 227 ? A 193.408 192.306 159.393 1 1 D VAL 0.680 1
ATOM 189 C CB . VAL 227 227 ? A 191.764 193.946 161.779 1 1 D VAL 0.680 1
ATOM 190 C CG1 . VAL 227 227 ? A 192.010 194.959 160.640 1 1 D VAL 0.680 1
ATOM 191 C CG2 . VAL 227 227 ? A 190.295 194.050 162.232 1 1 D VAL 0.680 1
ATOM 192 N N . VAL 228 228 ? A 194.493 192.380 161.376 1 1 D VAL 0.690 1
ATOM 193 C CA . VAL 228 228 ? A 195.845 192.240 160.843 1 1 D VAL 0.690 1
ATOM 194 C C . VAL 228 228 ? A 196.037 190.931 160.095 1 1 D VAL 0.690 1
ATOM 195 O O . VAL 228 228 ? A 196.557 190.910 158.986 1 1 D VAL 0.690 1
ATOM 196 C CB . VAL 228 228 ? A 196.906 192.357 161.945 1 1 D VAL 0.690 1
ATOM 197 C CG1 . VAL 228 228 ? A 198.328 192.066 161.412 1 1 D VAL 0.690 1
ATOM 198 C CG2 . VAL 228 228 ? A 196.889 193.785 162.524 1 1 D VAL 0.690 1
ATOM 199 N N . MET 229 229 ? A 195.602 189.787 160.649 1 1 D MET 0.550 1
ATOM 200 C CA . MET 229 229 ? A 195.748 188.499 159.992 1 1 D MET 0.550 1
ATOM 201 C C . MET 229 229 ? A 194.924 188.325 158.729 1 1 D MET 0.550 1
ATOM 202 O O . MET 229 229 ? A 195.378 187.751 157.744 1 1 D MET 0.550 1
ATOM 203 C CB . MET 229 229 ? A 195.364 187.350 160.943 1 1 D MET 0.550 1
ATOM 204 C CG . MET 229 229 ? A 196.357 187.154 162.098 1 1 D MET 0.550 1
ATOM 205 S SD . MET 229 229 ? A 195.808 185.914 163.308 1 1 D MET 0.550 1
ATOM 206 C CE . MET 229 229 ? A 196.038 184.453 162.261 1 1 D MET 0.550 1
ATOM 207 N N . ARG 230 230 ? A 193.665 188.803 158.739 1 1 D ARG 0.380 1
ATOM 208 C CA . ARG 230 230 ? A 192.761 188.644 157.616 1 1 D ARG 0.380 1
ATOM 209 C C . ARG 230 230 ? A 193.069 189.557 156.439 1 1 D ARG 0.380 1
ATOM 210 O O . ARG 230 230 ? A 192.617 189.299 155.323 1 1 D ARG 0.380 1
ATOM 211 C CB . ARG 230 230 ? A 191.311 188.956 158.051 1 1 D ARG 0.380 1
ATOM 212 C CG . ARG 230 230 ? A 190.682 187.920 159.001 1 1 D ARG 0.380 1
ATOM 213 C CD . ARG 230 230 ? A 189.274 188.349 159.410 1 1 D ARG 0.380 1
ATOM 214 N NE . ARG 230 230 ? A 188.700 187.285 160.295 1 1 D ARG 0.380 1
ATOM 215 C CZ . ARG 230 230 ? A 187.544 187.423 160.961 1 1 D ARG 0.380 1
ATOM 216 N NH1 . ARG 230 230 ? A 186.796 188.514 160.817 1 1 D ARG 0.380 1
ATOM 217 N NH2 . ARG 230 230 ? A 187.150 186.489 161.823 1 1 D ARG 0.380 1
ATOM 218 N N . LYS 231 231 ? A 193.805 190.658 156.671 1 1 D LYS 0.320 1
ATOM 219 C CA . LYS 231 231 ? A 194.088 191.671 155.677 1 1 D LYS 0.320 1
ATOM 220 C C . LYS 231 231 ? A 195.485 192.234 155.897 1 1 D LYS 0.320 1
ATOM 221 O O . LYS 231 231 ? A 195.663 193.443 156.019 1 1 D LYS 0.320 1
ATOM 222 C CB . LYS 231 231 ? A 193.070 192.839 155.765 1 1 D LYS 0.320 1
ATOM 223 C CG . LYS 231 231 ? A 191.618 192.427 155.493 1 1 D LYS 0.320 1
ATOM 224 C CD . LYS 231 231 ? A 190.662 193.624 155.503 1 1 D LYS 0.320 1
ATOM 225 C CE . LYS 231 231 ? A 189.222 193.213 155.204 1 1 D LYS 0.320 1
ATOM 226 N NZ . LYS 231 231 ? A 188.347 194.404 155.218 1 1 D LYS 0.320 1
ATOM 227 N N . MET 232 232 ? A 196.483 191.336 155.981 1 1 D MET 0.270 1
ATOM 228 C CA . MET 232 232 ? A 197.894 191.675 156.044 1 1 D MET 0.270 1
ATOM 229 C C . MET 232 232 ? A 198.442 192.284 154.711 1 1 D MET 0.270 1
ATOM 230 O O . MET 232 232 ? A 197.804 192.090 153.643 1 1 D MET 0.270 1
ATOM 231 C CB . MET 232 232 ? A 198.685 190.392 156.444 1 1 D MET 0.270 1
ATOM 232 C CG . MET 232 232 ? A 200.191 190.585 156.721 1 1 D MET 0.270 1
ATOM 233 S SD . MET 232 232 ? A 201.088 189.072 157.202 1 1 D MET 0.270 1
ATOM 234 C CE . MET 232 232 ? A 201.051 188.325 155.549 1 1 D MET 0.270 1
ATOM 235 O OXT . MET 232 232 ? A 199.514 192.950 154.775 1 1 D MET 0.270 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.582
2 1 3 0.036
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 200 ASP 1 0.260
2 1 A 201 GLY 1 0.370
3 1 A 202 LEU 1 0.300
4 1 A 203 SER 1 0.400
5 1 A 204 THR 1 0.540
6 1 A 205 VAL 1 0.550
7 1 A 206 THR 1 0.560
8 1 A 207 LEU 1 0.560
9 1 A 208 VAL 1 0.630
10 1 A 209 GLY 1 0.680
11 1 A 210 ILE 1 0.640
12 1 A 211 ILE 1 0.700
13 1 A 212 VAL 1 0.690
14 1 A 213 GLY 1 0.680
15 1 A 214 VAL 1 0.660
16 1 A 215 LEU 1 0.690
17 1 A 216 LEU 1 0.690
18 1 A 217 ALA 1 0.680
19 1 A 218 ILE 1 0.680
20 1 A 219 GLY 1 0.690
21 1 A 220 PHE 1 0.660
22 1 A 221 ILE 1 0.650
23 1 A 222 GLY 1 0.680
24 1 A 223 ALA 1 0.710
25 1 A 224 ILE 1 0.640
26 1 A 225 ILE 1 0.650
27 1 A 226 VAL 1 0.680
28 1 A 227 VAL 1 0.680
29 1 A 228 VAL 1 0.690
30 1 A 229 MET 1 0.550
31 1 A 230 ARG 1 0.380
32 1 A 231 LYS 1 0.320
33 1 A 232 MET 1 0.270
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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