data_SMR-39f7831c672f11eedadd0e049af79256_5 _entry.id SMR-39f7831c672f11eedadd0e049af79256_5 _struct.entry_id SMR-39f7831c672f11eedadd0e049af79256_5 _struct.pdbx_model_details ;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries: - P21707/ SYT1_RAT, Synaptotagmin-1 Estimated model accuracy of this model is 0.021, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE). ; _struct.pdbx_structure_determination_methodology computational _struct.title 'Model for UniProtKB entries P21707' _audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic _audit_conform.dict_name mmcif_ma.dic _audit_conform.dict_version 1.4.6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SWISS-MODEL Repository - new features and functionality' 'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132 2 'SWISS-MODEL: homology modelling of protein structures and complexes' 'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427 3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1) 1 18 2021 33507980 10.1371/journal.pcbi.1008667 4 'QMEANDisCo - distance constraints applied on model quality estimation' Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828 5 'OpenStructure: an integrated software framework for computational structural biology' 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579 10.1107/S0907444913007051 6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500 10.1186/1471-2105-10-421 7 'HH-suite3 for fast remote homology detection and deep protein annotation' 'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7 # # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bienert, S.' 1 primary 'Waterhouse, A.' 2 primary 'de Beer, T.A.P.' 3 primary 'Tauriello, G.' 4 primary 'Studer, G.' 5 primary 'Bordoli, L.' 6 primary 'Schwede, T.' 7 2 'Waterhouse, A.' 8 2 'Bertoni, M.' 9 2 'Bienert, S.' 10 2 'Studer, G.' 11 2 'Tauriello, G.' 12 2 'Gumienny, R.' 13 2 'Heer, F.T.' 14 2 'de Beer, T.A.P.' 15 2 'Rempfer, C.' 16 2 'Bordoli, L.' 17 2 'Lepore, R.' 18 2 'Schwede, T.' 19 3 'Studer, G.' 20 3 'Tauriello, G.' 21 3 'Bienert, S.' 22 3 'Biasini, M.' 23 3 'Johner, N.' 24 3 'Schwede, T.' 25 4 'Studer, G.' 26 4 'Rempfer, C.' 27 4 'Waterhouse, A.M.' 28 4 'Gumienny, R.' 29 4 'Haas, J.' 30 4 'Schwede, T.' 31 5 'Biasini, M.' 32 5 'Schmidt, T.' 33 5 'Bienert, S.' 34 5 'Mariani, V.' 35 5 'Studer, G.' 36 5 'Haas, J.' 37 5 'Johner, N.' 38 5 'Schenk, A.D.' 39 5 'Philippsen, A.' 40 5 'Schwede, T.' 41 6 'Camacho, C.' 42 6 'Coulouris, G.' 43 6 'Avagyan, V.' 44 6 'Ma, N.' 45 6 'Papadopoulos, J.' 46 6 'Bealer, K.' 47 6 'Madden, T.L.' 48 7 'Steinegger, M.' 49 7 'Meier, M.' 50 7 'Mirdita, M.' 51 7 'Vohringer, H.' 52 7 'Haunsberger, S.J.' 53 7 'Soding, J.' 54 # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location _software.citation_id 1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3 package https://swissmodel.expasy.org 2 2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library https://git.scicore.unibas.ch/schwede/ProMod3 3 3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1 library https://git.scicore.unibas.ch/schwede/QMEAN 4 4 OpenStructure 'data processing' 'Open-Source Computational Structural Biology Framework' 2.8.0 package https://openstructure.org/ 5 5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6 6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0 package https://github.com/soedinglab/hh-suite 7 # # loop_ _ma_software_group.ordinal_id _ma_software_group.group_id _ma_software_group.software_id _ma_software_group.parameter_group_id 1 1 6 . 2 2 1 . 3 2 4 . 4 2 5 . 5 2 6 . 6 3 1 . 7 3 4 . 8 4 1 . 9 4 2 . 10 4 4 . 11 5 3 . 12 6 1 . 13 6 3 . 14 6 4 . # # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bienert, S.' 1 'Waterhouse, A.' 2 'de Beer, T.A.P.' 3 'Tauriello, G.' 4 'Studer, G.' 5 'Bordoli, L.' 6 'Schwede, T.' 7 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight _chem_comp.ma_provenance ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core' ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core' ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core' ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core' CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core' GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core' GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core' GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core' HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core' ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core' MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core' PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core' PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core' SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core' THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core' TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core' TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core' VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core' # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man . 55038.956 1 . # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP SYT1_RAT P21707 1 ;MVSASHPEALAAPVTTVATLVPHNATEPASPGEGKEDAFSKLKQKFMNELHKIPLPPWALIAIAIVAVLL VVTCCFCVCKKCLFKKKNKKKGKEKGGKNAINMKDVKDLGKTMKDQALKDDDAETGLTDGEEKEEPKEEE KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSL RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVK K ; Synaptotagmin-1 # # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 421 1 421 # # loop_ _ma_target_ref_db_details.target_entity_id _ma_target_ref_db_details.db_name _ma_target_ref_db_details.db_name_other_details _ma_target_ref_db_details.db_code _ma_target_ref_db_details.db_accession _ma_target_ref_db_details.seq_db_isoform _ma_target_ref_db_details.seq_db_align_begin _ma_target_ref_db_details.seq_db_align_end _ma_target_ref_db_details.ncbi_taxonomy_id _ma_target_ref_db_details.organism_scientific _ma_target_ref_db_details.seq_db_sequence_version_date _ma_target_ref_db_details.seq_db_sequence_checksum 1 UNP . SYT1_RAT P21707 . 1 421 10116 'Rattus norvegicus (Rat)' 2006-05-02 06CE28F04C97A722 # # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polypeptide(L) no no B ;MVSASHPEALAAPVTTVATLVPHNATEPASPGEGKEDAFSKLKQKFMNELHKIPLPPWALIAIAIVAVLL VVTCCFCVCKKCLFKKKNKKKGKEKGGKNAINMKDVKDLGKTMKDQALKDDDAETGLTDGEEKEEPKEEE KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSL RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVK K ; ;MVSASHPEALAAPVTTVATLVPHNATEPASPGEGKEDAFSKLKQKFMNELHKIPLPPWALIAIAIVAVLL VVTCCFCVCKKCLFKKKNKKKGKEKGGKNAINMKDVKDLGKTMKDQALKDDDAETGLTDGEEKEEPKEEE KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSL RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVK K ; # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET . 1 2 VAL . 1 3 SER . 1 4 ALA . 1 5 SER . 1 6 HIS . 1 7 PRO . 1 8 GLU . 1 9 ALA . 1 10 LEU . 1 11 ALA . 1 12 ALA . 1 13 PRO . 1 14 VAL . 1 15 THR . 1 16 THR . 1 17 VAL . 1 18 ALA . 1 19 THR . 1 20 LEU . 1 21 VAL . 1 22 PRO . 1 23 HIS . 1 24 ASN . 1 25 ALA . 1 26 THR . 1 27 GLU . 1 28 PRO . 1 29 ALA . 1 30 SER . 1 31 PRO . 1 32 GLY . 1 33 GLU . 1 34 GLY . 1 35 LYS . 1 36 GLU . 1 37 ASP . 1 38 ALA . 1 39 PHE . 1 40 SER . 1 41 LYS . 1 42 LEU . 1 43 LYS . 1 44 GLN . 1 45 LYS . 1 46 PHE . 1 47 MET . 1 48 ASN . 1 49 GLU . 1 50 LEU . 1 51 HIS . 1 52 LYS . 1 53 ILE . 1 54 PRO . 1 55 LEU . 1 56 PRO . 1 57 PRO . 1 58 TRP . 1 59 ALA . 1 60 LEU . 1 61 ILE . 1 62 ALA . 1 63 ILE . 1 64 ALA . 1 65 ILE . 1 66 VAL . 1 67 ALA . 1 68 VAL . 1 69 LEU . 1 70 LEU . 1 71 VAL . 1 72 VAL . 1 73 THR . 1 74 CYS . 1 75 CYS . 1 76 PHE . 1 77 CYS . 1 78 VAL . 1 79 CYS . 1 80 LYS . 1 81 LYS . 1 82 CYS . 1 83 LEU . 1 84 PHE . 1 85 LYS . 1 86 LYS . 1 87 LYS . 1 88 ASN . 1 89 LYS . 1 90 LYS . 1 91 LYS . 1 92 GLY . 1 93 LYS . 1 94 GLU . 1 95 LYS . 1 96 GLY . 1 97 GLY . 1 98 LYS . 1 99 ASN . 1 100 ALA . 1 101 ILE . 1 102 ASN . 1 103 MET . 1 104 LYS . 1 105 ASP . 1 106 VAL . 1 107 LYS . 1 108 ASP . 1 109 LEU . 1 110 GLY . 1 111 LYS . 1 112 THR . 1 113 MET . 1 114 LYS . 1 115 ASP . 1 116 GLN . 1 117 ALA . 1 118 LEU . 1 119 LYS . 1 120 ASP . 1 121 ASP . 1 122 ASP . 1 123 ALA . 1 124 GLU . 1 125 THR . 1 126 GLY . 1 127 LEU . 1 128 THR . 1 129 ASP . 1 130 GLY . 1 131 GLU . 1 132 GLU . 1 133 LYS . 1 134 GLU . 1 135 GLU . 1 136 PRO . 1 137 LYS . 1 138 GLU . 1 139 GLU . 1 140 GLU . 1 141 LYS . 1 142 LEU . 1 143 GLY . 1 144 LYS . 1 145 LEU . 1 146 GLN . 1 147 TYR . 1 148 SER . 1 149 LEU . 1 150 ASP . 1 151 TYR . 1 152 ASP . 1 153 PHE . 1 154 GLN . 1 155 ASN . 1 156 ASN . 1 157 GLN . 1 158 LEU . 1 159 LEU . 1 160 VAL . 1 161 GLY . 1 162 ILE . 1 163 ILE . 1 164 GLN . 1 165 ALA . 1 166 ALA . 1 167 GLU . 1 168 LEU . 1 169 PRO . 1 170 ALA . 1 171 LEU . 1 172 ASP . 1 173 MET . 1 174 GLY . 1 175 GLY . 1 176 THR . 1 177 SER . 1 178 ASP . 1 179 PRO . 1 180 TYR . 1 181 VAL . 1 182 LYS . 1 183 VAL . 1 184 PHE . 1 185 LEU . 1 186 LEU . 1 187 PRO . 1 188 ASP . 1 189 LYS . 1 190 LYS . 1 191 LYS . 1 192 LYS . 1 193 PHE . 1 194 GLU . 1 195 THR . 1 196 LYS . 1 197 VAL . 1 198 HIS . 1 199 ARG . 1 200 LYS . 1 201 THR . 1 202 LEU . 1 203 ASN . 1 204 PRO . 1 205 VAL . 1 206 PHE . 1 207 ASN . 1 208 GLU . 1 209 GLN . 1 210 PHE . 1 211 THR . 1 212 PHE . 1 213 LYS . 1 214 VAL . 1 215 PRO . 1 216 TYR . 1 217 SER . 1 218 GLU . 1 219 LEU . 1 220 GLY . 1 221 GLY . 1 222 LYS . 1 223 THR . 1 224 LEU . 1 225 VAL . 1 226 MET . 1 227 ALA . 1 228 VAL . 1 229 TYR . 1 230 ASP . 1 231 PHE . 1 232 ASP . 1 233 ARG . 1 234 PHE . 1 235 SER . 1 236 LYS . 1 237 HIS . 1 238 ASP . 1 239 ILE . 1 240 ILE . 1 241 GLY . 1 242 GLU . 1 243 PHE . 1 244 LYS . 1 245 VAL . 1 246 PRO . 1 247 MET . 1 248 ASN . 1 249 THR . 1 250 VAL . 1 251 ASP . 1 252 PHE . 1 253 GLY . 1 254 HIS . 1 255 VAL . 1 256 THR . 1 257 GLU . 1 258 GLU . 1 259 TRP . 1 260 ARG . 1 261 ASP . 1 262 LEU . 1 263 GLN . 1 264 SER . 1 265 ALA . 1 266 GLU . 1 267 LYS . 1 268 GLU . 1 269 GLU . 1 270 GLN . 1 271 GLU . 1 272 LYS . 1 273 LEU . 1 274 GLY . 1 275 ASP . 1 276 ILE . 1 277 CYS . 1 278 PHE . 1 279 SER . 1 280 LEU . 1 281 ARG . 1 282 TYR . 1 283 VAL . 1 284 PRO . 1 285 THR . 1 286 ALA . 1 287 GLY . 1 288 LYS . 1 289 LEU . 1 290 THR . 1 291 VAL . 1 292 VAL . 1 293 ILE . 1 294 LEU . 1 295 GLU . 1 296 ALA . 1 297 LYS . 1 298 ASN . 1 299 LEU . 1 300 LYS . 1 301 LYS . 1 302 MET . 1 303 ASP . 1 304 VAL . 1 305 GLY . 1 306 GLY . 1 307 LEU . 1 308 SER . 1 309 ASP . 1 310 PRO . 1 311 TYR . 1 312 VAL . 1 313 LYS . 1 314 ILE . 1 315 HIS . 1 316 LEU . 1 317 MET . 1 318 GLN . 1 319 ASN . 1 320 GLY . 1 321 LYS . 1 322 ARG . 1 323 LEU . 1 324 LYS . 1 325 LYS . 1 326 LYS . 1 327 LYS . 1 328 THR . 1 329 THR . 1 330 ILE . 1 331 LYS . 1 332 LYS . 1 333 ASN . 1 334 THR . 1 335 LEU . 1 336 ASN . 1 337 PRO . 1 338 TYR . 1 339 TYR . 1 340 ASN . 1 341 GLU . 1 342 SER . 1 343 PHE . 1 344 SER . 1 345 PHE . 1 346 GLU . 1 347 VAL . 1 348 PRO . 1 349 PHE . 1 350 GLU . 1 351 GLN . 1 352 ILE . 1 353 GLN . 1 354 LYS . 1 355 VAL . 1 356 GLN . 1 357 VAL . 1 358 VAL . 1 359 VAL . 1 360 THR . 1 361 VAL . 1 362 LEU . 1 363 ASP . 1 364 TYR . 1 365 ASP . 1 366 LYS . 1 367 ILE . 1 368 GLY . 1 369 LYS . 1 370 ASN . 1 371 ASP . 1 372 ALA . 1 373 ILE . 1 374 GLY . 1 375 LYS . 1 376 VAL . 1 377 PHE . 1 378 VAL . 1 379 GLY . 1 380 TYR . 1 381 ASN . 1 382 SER . 1 383 THR . 1 384 GLY . 1 385 ALA . 1 386 GLU . 1 387 LEU . 1 388 ARG . 1 389 HIS . 1 390 TRP . 1 391 SER . 1 392 ASP . 1 393 MET . 1 394 LEU . 1 395 ALA . 1 396 ASN . 1 397 PRO . 1 398 ARG . 1 399 ARG . 1 400 PRO . 1 401 ILE . 1 402 ALA . 1 403 GLN . 1 404 TRP . 1 405 HIS . 1 406 THR . 1 407 LEU . 1 408 GLN . 1 409 VAL . 1 410 GLU . 1 411 GLU . 1 412 GLU . 1 413 VAL . 1 414 ASP . 1 415 ALA . 1 416 MET . 1 417 LEU . 1 418 ALA . 1 419 VAL . 1 420 LYS . 1 421 LYS . # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 . # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 ? ? ? B . A 1 2 VAL 2 ? ? ? B . A 1 3 SER 3 ? ? ? B . A 1 4 ALA 4 ? ? ? B . A 1 5 SER 5 ? ? ? B . A 1 6 HIS 6 ? ? ? B . A 1 7 PRO 7 ? ? ? B . A 1 8 GLU 8 ? ? ? B . A 1 9 ALA 9 ? ? ? B . A 1 10 LEU 10 ? ? ? B . A 1 11 ALA 11 ? ? ? B . A 1 12 ALA 12 ? ? ? B . A 1 13 PRO 13 ? ? ? B . A 1 14 VAL 14 ? ? ? B . A 1 15 THR 15 ? ? ? B . A 1 16 THR 16 ? ? ? B . A 1 17 VAL 17 ? ? ? B . A 1 18 ALA 18 ? ? ? B . A 1 19 THR 19 ? ? ? B . A 1 20 LEU 20 ? ? ? B . A 1 21 VAL 21 ? ? ? B . A 1 22 PRO 22 ? ? ? B . A 1 23 HIS 23 ? ? ? B . A 1 24 ASN 24 ? ? ? B . A 1 25 ALA 25 ? ? ? B . A 1 26 THR 26 ? ? ? B . A 1 27 GLU 27 ? ? ? B . A 1 28 PRO 28 ? ? ? B . A 1 29 ALA 29 ? ? ? B . A 1 30 SER 30 ? ? ? B . A 1 31 PRO 31 ? ? ? B . A 1 32 GLY 32 ? ? ? B . A 1 33 GLU 33 ? ? ? B . A 1 34 GLY 34 ? ? ? B . A 1 35 LYS 35 35 LYS LYS B . A 1 36 GLU 36 36 GLU GLU B . A 1 37 ASP 37 37 ASP ASP B . A 1 38 ALA 38 38 ALA ALA B . A 1 39 PHE 39 39 PHE PHE B . A 1 40 SER 40 40 SER SER B . A 1 41 LYS 41 41 LYS LYS B . A 1 42 LEU 42 42 LEU LEU B . A 1 43 LYS 43 43 LYS LYS B . A 1 44 GLN 44 44 GLN GLN B . A 1 45 LYS 45 45 LYS LYS B . A 1 46 PHE 46 46 PHE PHE B . A 1 47 MET 47 47 MET MET B . A 1 48 ASN 48 48 ASN ASN B . A 1 49 GLU 49 49 GLU GLU B . A 1 50 LEU 50 50 LEU LEU B . A 1 51 HIS 51 51 HIS HIS B . A 1 52 LYS 52 ? ? ? B . A 1 53 ILE 53 ? ? ? B . A 1 54 PRO 54 ? ? ? B . A 1 55 LEU 55 ? ? ? B . A 1 56 PRO 56 ? ? ? B . A 1 57 PRO 57 ? ? ? B . A 1 58 TRP 58 ? ? ? B . A 1 59 ALA 59 ? ? ? B . A 1 60 LEU 60 ? ? ? B . A 1 61 ILE 61 ? ? ? B . A 1 62 ALA 62 ? ? ? B . A 1 63 ILE 63 ? ? ? B . A 1 64 ALA 64 ? ? ? B . A 1 65 ILE 65 ? ? ? B . A 1 66 VAL 66 ? ? ? B . A 1 67 ALA 67 ? ? ? B . A 1 68 VAL 68 ? ? ? B . A 1 69 LEU 69 ? ? ? B . A 1 70 LEU 70 ? ? ? B . A 1 71 VAL 71 ? ? ? B . A 1 72 VAL 72 ? ? ? B . A 1 73 THR 73 ? ? ? B . A 1 74 CYS 74 ? ? ? B . A 1 75 CYS 75 ? ? ? B . A 1 76 PHE 76 ? ? ? B . A 1 77 CYS 77 ? ? ? B . A 1 78 VAL 78 ? ? ? B . A 1 79 CYS 79 ? ? ? B . A 1 80 LYS 80 ? ? ? B . A 1 81 LYS 81 ? ? ? B . A 1 82 CYS 82 ? ? ? B . A 1 83 LEU 83 ? ? ? B . A 1 84 PHE 84 ? ? ? B . A 1 85 LYS 85 ? ? ? B . A 1 86 LYS 86 ? ? ? B . A 1 87 LYS 87 ? ? ? B . A 1 88 ASN 88 ? ? ? B . A 1 89 LYS 89 ? ? ? B . A 1 90 LYS 90 ? ? ? B . A 1 91 LYS 91 ? ? ? B . A 1 92 GLY 92 ? ? ? B . A 1 93 LYS 93 ? ? ? B . A 1 94 GLU 94 ? ? ? B . A 1 95 LYS 95 ? ? ? B . A 1 96 GLY 96 ? ? ? B . A 1 97 GLY 97 ? ? ? B . A 1 98 LYS 98 ? ? ? B . A 1 99 ASN 99 ? ? ? B . A 1 100 ALA 100 ? ? ? B . A 1 101 ILE 101 ? ? ? B . A 1 102 ASN 102 ? ? ? B . A 1 103 MET 103 ? ? ? B . A 1 104 LYS 104 ? ? ? B . A 1 105 ASP 105 ? ? ? B . A 1 106 VAL 106 ? ? ? B . A 1 107 LYS 107 ? ? ? B . A 1 108 ASP 108 ? ? ? B . A 1 109 LEU 109 ? ? ? B . A 1 110 GLY 110 ? ? ? B . A 1 111 LYS 111 ? ? ? B . A 1 112 THR 112 ? ? ? B . A 1 113 MET 113 ? ? ? B . A 1 114 LYS 114 ? ? ? B . A 1 115 ASP 115 ? ? ? B . A 1 116 GLN 116 ? ? ? B . A 1 117 ALA 117 ? ? ? B . A 1 118 LEU 118 ? ? ? B . A 1 119 LYS 119 ? ? ? B . A 1 120 ASP 120 ? ? ? B . A 1 121 ASP 121 ? ? ? B . A 1 122 ASP 122 ? ? ? B . A 1 123 ALA 123 ? ? ? B . A 1 124 GLU 124 ? ? ? B . A 1 125 THR 125 ? ? ? B . A 1 126 GLY 126 ? ? ? B . A 1 127 LEU 127 ? ? ? B . A 1 128 THR 128 ? ? ? B . A 1 129 ASP 129 ? ? ? B . A 1 130 GLY 130 ? ? ? B . A 1 131 GLU 131 ? ? ? B . A 1 132 GLU 132 ? ? ? B . A 1 133 LYS 133 ? ? ? B . A 1 134 GLU 134 ? ? ? B . A 1 135 GLU 135 ? ? ? B . A 1 136 PRO 136 ? ? ? B . A 1 137 LYS 137 ? ? ? B . A 1 138 GLU 138 ? ? ? B . A 1 139 GLU 139 ? ? ? B . A 1 140 GLU 140 ? ? ? B . A 1 141 LYS 141 ? ? ? B . A 1 142 LEU 142 ? ? ? B . A 1 143 GLY 143 ? ? ? B . A 1 144 LYS 144 ? ? ? B . A 1 145 LEU 145 ? ? ? B . A 1 146 GLN 146 ? ? ? B . A 1 147 TYR 147 ? ? ? B . A 1 148 SER 148 ? ? ? B . A 1 149 LEU 149 ? ? ? B . A 1 150 ASP 150 ? ? ? B . A 1 151 TYR 151 ? ? ? B . A 1 152 ASP 152 ? ? ? B . A 1 153 PHE 153 ? ? ? B . A 1 154 GLN 154 ? ? ? B . A 1 155 ASN 155 ? ? ? B . A 1 156 ASN 156 ? ? ? B . A 1 157 GLN 157 ? ? ? B . A 1 158 LEU 158 ? ? ? B . A 1 159 LEU 159 ? ? ? B . A 1 160 VAL 160 ? ? ? B . A 1 161 GLY 161 ? ? ? B . A 1 162 ILE 162 ? ? ? B . A 1 163 ILE 163 ? ? ? B . A 1 164 GLN 164 ? ? ? B . A 1 165 ALA 165 ? ? ? B . A 1 166 ALA 166 ? ? ? B . A 1 167 GLU 167 ? ? ? B . A 1 168 LEU 168 ? ? ? B . A 1 169 PRO 169 ? ? ? B . A 1 170 ALA 170 ? ? ? B . A 1 171 LEU 171 ? ? ? B . A 1 172 ASP 172 ? ? ? B . A 1 173 MET 173 ? ? ? B . A 1 174 GLY 174 ? ? ? B . A 1 175 GLY 175 ? ? ? B . A 1 176 THR 176 ? ? ? B . A 1 177 SER 177 ? ? ? B . A 1 178 ASP 178 ? ? ? B . A 1 179 PRO 179 ? ? ? B . A 1 180 TYR 180 ? ? ? B . A 1 181 VAL 181 ? ? ? B . A 1 182 LYS 182 ? ? ? B . A 1 183 VAL 183 ? ? ? B . A 1 184 PHE 184 ? ? ? B . A 1 185 LEU 185 ? ? ? B . A 1 186 LEU 186 ? ? ? B . A 1 187 PRO 187 ? ? ? B . A 1 188 ASP 188 ? ? ? B . A 1 189 LYS 189 ? ? ? B . A 1 190 LYS 190 ? ? ? B . A 1 191 LYS 191 ? ? ? B . A 1 192 LYS 192 ? ? ? B . A 1 193 PHE 193 ? ? ? B . A 1 194 GLU 194 ? ? ? B . A 1 195 THR 195 ? ? ? B . A 1 196 LYS 196 ? ? ? B . A 1 197 VAL 197 ? ? ? B . A 1 198 HIS 198 ? ? ? B . A 1 199 ARG 199 ? ? ? B . A 1 200 LYS 200 ? ? ? B . A 1 201 THR 201 ? ? ? B . A 1 202 LEU 202 ? ? ? B . A 1 203 ASN 203 ? ? ? B . A 1 204 PRO 204 ? ? ? B . A 1 205 VAL 205 ? ? ? B . A 1 206 PHE 206 ? ? ? B . A 1 207 ASN 207 ? ? ? B . A 1 208 GLU 208 ? ? ? B . A 1 209 GLN 209 ? ? ? B . A 1 210 PHE 210 ? ? ? B . A 1 211 THR 211 ? ? ? B . A 1 212 PHE 212 ? ? ? B . A 1 213 LYS 213 ? ? ? B . A 1 214 VAL 214 ? ? ? B . A 1 215 PRO 215 ? ? ? B . A 1 216 TYR 216 ? ? ? B . A 1 217 SER 217 ? ? ? B . A 1 218 GLU 218 ? ? ? B . A 1 219 LEU 219 ? ? ? B . A 1 220 GLY 220 ? ? ? B . A 1 221 GLY 221 ? ? ? B . A 1 222 LYS 222 ? ? ? B . A 1 223 THR 223 ? ? ? B . A 1 224 LEU 224 ? ? ? B . A 1 225 VAL 225 ? ? ? B . A 1 226 MET 226 ? ? ? B . A 1 227 ALA 227 ? ? ? B . A 1 228 VAL 228 ? ? ? B . A 1 229 TYR 229 ? ? ? B . A 1 230 ASP 230 ? ? ? B . A 1 231 PHE 231 ? ? ? B . A 1 232 ASP 232 ? ? ? B . A 1 233 ARG 233 ? ? ? B . A 1 234 PHE 234 ? ? ? B . A 1 235 SER 235 ? ? ? B . A 1 236 LYS 236 ? ? ? B . A 1 237 HIS 237 ? ? ? B . A 1 238 ASP 238 ? ? ? B . A 1 239 ILE 239 ? ? ? B . A 1 240 ILE 240 ? ? ? B . A 1 241 GLY 241 ? ? ? B . A 1 242 GLU 242 ? ? ? B . A 1 243 PHE 243 ? ? ? B . A 1 244 LYS 244 ? ? ? B . A 1 245 VAL 245 ? ? ? B . A 1 246 PRO 246 ? ? ? B . A 1 247 MET 247 ? ? ? B . A 1 248 ASN 248 ? ? ? B . A 1 249 THR 249 ? ? ? B . A 1 250 VAL 250 ? ? ? B . A 1 251 ASP 251 ? ? ? B . A 1 252 PHE 252 ? ? ? B . A 1 253 GLY 253 ? ? ? B . A 1 254 HIS 254 ? ? ? B . A 1 255 VAL 255 ? ? ? B . A 1 256 THR 256 ? ? ? B . A 1 257 GLU 257 ? ? ? B . A 1 258 GLU 258 ? ? ? B . A 1 259 TRP 259 ? ? ? B . A 1 260 ARG 260 ? ? ? B . A 1 261 ASP 261 ? ? ? B . A 1 262 LEU 262 ? ? ? B . A 1 263 GLN 263 ? ? ? B . A 1 264 SER 264 ? ? ? B . A 1 265 ALA 265 ? ? ? B . A 1 266 GLU 266 ? ? ? B . A 1 267 LYS 267 ? ? ? B . A 1 268 GLU 268 ? ? ? B . A 1 269 GLU 269 ? ? ? B . A 1 270 GLN 270 ? ? ? B . A 1 271 GLU 271 ? ? ? B . A 1 272 LYS 272 ? ? ? B . A 1 273 LEU 273 ? ? ? B . A 1 274 GLY 274 ? ? ? B . A 1 275 ASP 275 ? ? ? B . A 1 276 ILE 276 ? ? ? B . A 1 277 CYS 277 ? ? ? B . A 1 278 PHE 278 ? ? ? B . A 1 279 SER 279 ? ? ? B . A 1 280 LEU 280 ? ? ? B . A 1 281 ARG 281 ? ? ? B . A 1 282 TYR 282 ? ? ? B . A 1 283 VAL 283 ? ? ? B . A 1 284 PRO 284 ? ? ? B . A 1 285 THR 285 ? ? ? B . A 1 286 ALA 286 ? ? ? B . A 1 287 GLY 287 ? ? ? B . A 1 288 LYS 288 ? ? ? B . A 1 289 LEU 289 ? ? ? B . A 1 290 THR 290 ? ? ? B . A 1 291 VAL 291 ? ? ? B . A 1 292 VAL 292 ? ? ? B . A 1 293 ILE 293 ? ? ? B . A 1 294 LEU 294 ? ? ? B . A 1 295 GLU 295 ? ? ? B . A 1 296 ALA 296 ? ? ? B . A 1 297 LYS 297 ? ? ? B . A 1 298 ASN 298 ? ? ? B . A 1 299 LEU 299 ? ? ? B . A 1 300 LYS 300 ? ? ? B . A 1 301 LYS 301 ? ? ? B . A 1 302 MET 302 ? ? ? B . A 1 303 ASP 303 ? ? ? B . A 1 304 VAL 304 ? ? ? B . A 1 305 GLY 305 ? ? ? B . A 1 306 GLY 306 ? ? ? B . A 1 307 LEU 307 ? ? ? B . A 1 308 SER 308 ? ? ? B . A 1 309 ASP 309 ? ? ? B . A 1 310 PRO 310 ? ? ? B . A 1 311 TYR 311 ? ? ? B . A 1 312 VAL 312 ? ? ? B . A 1 313 LYS 313 ? ? ? B . A 1 314 ILE 314 ? ? ? B . A 1 315 HIS 315 ? ? ? B . A 1 316 LEU 316 ? ? ? B . A 1 317 MET 317 ? ? ? B . A 1 318 GLN 318 ? ? ? B . A 1 319 ASN 319 ? ? ? B . A 1 320 GLY 320 ? ? ? B . A 1 321 LYS 321 ? ? ? B . A 1 322 ARG 322 ? ? ? B . A 1 323 LEU 323 ? ? ? B . A 1 324 LYS 324 ? ? ? B . A 1 325 LYS 325 ? ? ? B . A 1 326 LYS 326 ? ? ? B . A 1 327 LYS 327 ? ? ? B . A 1 328 THR 328 ? ? ? B . A 1 329 THR 329 ? ? ? B . A 1 330 ILE 330 ? ? ? B . A 1 331 LYS 331 ? ? ? B . A 1 332 LYS 332 ? ? ? B . A 1 333 ASN 333 ? ? ? B . A 1 334 THR 334 ? ? ? B . A 1 335 LEU 335 ? ? ? B . A 1 336 ASN 336 ? ? ? B . A 1 337 PRO 337 ? ? ? B . A 1 338 TYR 338 ? ? ? B . A 1 339 TYR 339 ? ? ? B . A 1 340 ASN 340 ? ? ? B . A 1 341 GLU 341 ? ? ? B . A 1 342 SER 342 ? ? ? B . A 1 343 PHE 343 ? ? ? B . A 1 344 SER 344 ? ? ? B . A 1 345 PHE 345 ? ? ? B . A 1 346 GLU 346 ? ? ? B . A 1 347 VAL 347 ? ? ? B . A 1 348 PRO 348 ? ? ? B . A 1 349 PHE 349 ? ? ? B . A 1 350 GLU 350 ? ? ? B . A 1 351 GLN 351 ? ? ? B . A 1 352 ILE 352 ? ? ? B . A 1 353 GLN 353 ? ? ? B . A 1 354 LYS 354 ? ? ? B . A 1 355 VAL 355 ? ? ? B . A 1 356 GLN 356 ? ? ? B . A 1 357 VAL 357 ? ? ? B . A 1 358 VAL 358 ? ? ? B . A 1 359 VAL 359 ? ? ? B . A 1 360 THR 360 ? ? ? B . A 1 361 VAL 361 ? ? ? B . A 1 362 LEU 362 ? ? ? B . A 1 363 ASP 363 ? ? ? B . A 1 364 TYR 364 ? ? ? B . A 1 365 ASP 365 ? ? ? B . A 1 366 LYS 366 ? ? ? B . A 1 367 ILE 367 ? ? ? B . A 1 368 GLY 368 ? ? ? B . A 1 369 LYS 369 ? ? ? B . A 1 370 ASN 370 ? ? ? B . A 1 371 ASP 371 ? ? ? B . A 1 372 ALA 372 ? ? ? B . A 1 373 ILE 373 ? ? ? B . A 1 374 GLY 374 ? ? ? B . A 1 375 LYS 375 ? ? ? B . A 1 376 VAL 376 ? ? ? B . A 1 377 PHE 377 ? ? ? B . A 1 378 VAL 378 ? ? ? B . A 1 379 GLY 379 ? ? ? B . A 1 380 TYR 380 ? ? ? B . A 1 381 ASN 381 ? ? ? B . A 1 382 SER 382 ? ? ? B . A 1 383 THR 383 ? ? ? B . A 1 384 GLY 384 ? ? ? B . A 1 385 ALA 385 ? ? ? B . A 1 386 GLU 386 ? ? ? B . A 1 387 LEU 387 ? ? ? B . A 1 388 ARG 388 ? ? ? B . A 1 389 HIS 389 ? ? ? B . A 1 390 TRP 390 ? ? ? B . A 1 391 SER 391 ? ? ? B . A 1 392 ASP 392 ? ? ? B . A 1 393 MET 393 ? ? ? B . A 1 394 LEU 394 ? ? ? B . A 1 395 ALA 395 ? ? ? B . A 1 396 ASN 396 ? ? ? B . A 1 397 PRO 397 ? ? ? B . A 1 398 ARG 398 ? ? ? B . A 1 399 ARG 399 ? ? ? B . A 1 400 PRO 400 ? ? ? B . A 1 401 ILE 401 ? ? ? B . A 1 402 ALA 402 ? ? ? B . A 1 403 GLN 403 ? ? ? B . A 1 404 TRP 404 ? ? ? B . A 1 405 HIS 405 ? ? ? B . A 1 406 THR 406 ? ? ? B . A 1 407 LEU 407 ? ? ? B . A 1 408 GLN 408 ? ? ? B . A 1 409 VAL 409 ? ? ? B . A 1 410 GLU 410 ? ? ? B . A 1 411 GLU 411 ? ? ? B . A 1 412 GLU 412 ? ? ? B . A 1 413 VAL 413 ? ? ? B . A 1 414 ASP 414 ? ? ? B . A 1 415 ALA 415 ? ? ? B . A 1 416 MET 416 ? ? ? B . A 1 417 LEU 417 ? ? ? B . A 1 418 ALA 418 ? ? ? B . A 1 419 VAL 419 ? ? ? B . A 1 420 LYS 420 ? ? ? B . A 1 421 LYS 421 ? ? ? B . # # loop_ _ma_data.id _ma_data.name _ma_data.content_type _ma_data.content_type_other_details 1 'Synaptotagmin-1 {PDB ID=8b8i, label_asym_id=I, auth_asym_id=I, SMTL ID=8b8i.1.B}' 'template structure' . 2 . target . 3 'Target-template alignment by HHblits to 8b8i, label_asym_id=I' 'target-template alignment' . 4 'model 5' 'model coordinates' . 5 SMTL 'reference database' . 6 PDB 'reference database' . 7 'Template search output' other 'Results of the sequence search' # # loop_ _ma_data_group.ordinal_id _ma_data_group.group_id _ma_data_group.data_id 1 1 2 2 1 5 3 1 6 4 2 7 5 3 2 6 3 1 7 3 3 8 4 1 9 4 3 10 5 4 # # loop_ _ma_data_ref_db.data_id _ma_data_ref_db.name _ma_data_ref_db.location_url _ma_data_ref_db.version _ma_data_ref_db.release_date 5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-14 6 PDB https://www.wwpdb.org . 2024-11-08 # # loop_ _ma_target_entity.entity_id _ma_target_entity.data_id _ma_target_entity.origin 1 2 'reference database' # # loop_ _ma_target_entity_instance.asym_id _ma_target_entity_instance.entity_id _ma_target_entity_instance.details A 1 . # # loop_ _ma_template_trans_matrix.id _ma_template_trans_matrix.rot_matrix[1][1] _ma_template_trans_matrix.rot_matrix[2][1] _ma_template_trans_matrix.rot_matrix[3][1] _ma_template_trans_matrix.rot_matrix[1][2] _ma_template_trans_matrix.rot_matrix[2][2] _ma_template_trans_matrix.rot_matrix[3][2] _ma_template_trans_matrix.rot_matrix[1][3] _ma_template_trans_matrix.rot_matrix[2][3] _ma_template_trans_matrix.rot_matrix[3][3] _ma_template_trans_matrix.tr_vector[1] _ma_template_trans_matrix.tr_vector[2] _ma_template_trans_matrix.tr_vector[3] 1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0 0 0 # # loop_ _ma_template_details.ordinal_id _ma_template_details.template_id _ma_template_details.template_origin _ma_template_details.template_entity_type _ma_template_details.template_trans_matrix_id _ma_template_details.template_data_id _ma_template_details.target_asym_id _ma_template_details.template_label_asym_id _ma_template_details.template_label_entity_id _ma_template_details.template_model_num _ma_template_details.template_auth_asym_id 1 1 'reference database' polymer 1 1 A I 2 1 I # # loop_ _ma_template_poly.template_id _ma_template_poly.seq_one_letter_code _ma_template_poly.seq_one_letter_code_can 1 MVSESHHEALAAPPVTTVATVLPSNATEPASPGEGKEDAFSKLKEKFMNELHKIPLPPWA MVSESHHEALAAPPVTTVATVLPSNATEPASPGEGKEDAFSKLKEKFMNELHKIPLPPWA # # loop_ _ma_template_poly_segment.id _ma_template_poly_segment.template_id _ma_template_poly_segment.residue_number_begin _ma_template_poly_segment.residue_number_end 1 1 1 60 # # loop_ _ma_template_ref_db_details.template_id _ma_template_ref_db_details.db_name _ma_template_ref_db_details.db_name_other_details _ma_template_ref_db_details.db_accession_code _ma_template_ref_db_details.db_version_date 1 PDB . 8b8i 2024-04-17 # # loop_ _ma_target_template_poly_mapping.id _ma_target_template_poly_mapping.template_segment_id _ma_target_template_poly_mapping.target_asym_id _ma_target_template_poly_mapping.target_seq_id_begin _ma_target_template_poly_mapping.target_seq_id_end 1 1 A 1 421 # # loop_ _ma_alignment_info.alignment_id _ma_alignment_info.data_id _ma_alignment_info.software_group_id _ma_alignment_info.alignment_length _ma_alignment_info.alignment_type _ma_alignment_info.alignment_mode 1 3 1 422 'target-template pairwise alignment' local # # loop_ _ma_alignment_details.ordinal_id _ma_alignment_details.alignment_id _ma_alignment_details.template_segment_id _ma_alignment_details.target_asym_id _ma_alignment_details.score_type _ma_alignment_details.score_type_other_details _ma_alignment_details.score_value _ma_alignment_details.percent_sequence_identity _ma_alignment_details.sequence_identity_denominator _ma_alignment_details.sequence_identity_denominator_other_details 1 1 1 A 'HHblits e-value' . 7.4e-10 86.441 'Number of aligned residue pairs (not including the gaps)' . # # loop_ _ma_alignment.ordinal_id _ma_alignment.alignment_id _ma_alignment.target_template_flag _ma_alignment.sequence 1 1 1 MVSASHPEALAAPVT-TVATLVPHNATEPASPGEGKEDAFSKLKQKFMNELHKIPLPPWALIAIAIVAVLLVVTCCFCVCKKCLFKKKNKKKGKEKGGKNAINMKDVKDLGKTMKDQALKDDDAETGLTDGEEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVKK 2 1 2 MVSESHHEALAAPPVTTVATVLPSNATEPASPGEGKEDAFSKLKEKFMNELHKIPLPPWA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # # loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.step_name _ma_protocol_step.details _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2 1 2 2 1 2 'template selection' 'template selection' 'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4 3 1 3 modeling 'homology modeling' 'SWISS-MODEL auto-model mode using ProMod3 on 8b8i.1' 4 3 5 # # loop_ _ma_model_list.ordinal_id _ma_model_list.model_id _ma_model_list.model_group_id _ma_model_list.model_name _ma_model_list.model_group_name _ma_model_list.data_id _ma_model_list.model_type _ma_model_list.model_type_other_details 1 1 1 'model 5' . 4 'Homology model' . # # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.auth_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.label_entity_id _atom_site.auth_asym_id _atom_site.auth_comp_id _atom_site.B_iso_or_equiv _atom_site.pdbx_PDB_model_num ATOM 1 N N . LYS 35 35 ? A 13.700 2.999 17.126 1 1 B LYS 0.650 1 ATOM 2 C CA . LYS 35 35 ? A 13.560 4.278 17.923 1 1 B LYS 0.650 1 ATOM 3 C C . LYS 35 35 ? A 12.560 5.191 17.239 1 1 B LYS 0.650 1 ATOM 4 O O . LYS 35 35 ? A 12.472 5.134 16.014 1 1 B LYS 0.650 1 ATOM 5 C CB . LYS 35 35 ? A 14.943 4.996 18.011 1 1 B LYS 0.650 1 ATOM 6 C CG . LYS 35 35 ? A 15.068 6.147 19.031 1 1 B LYS 0.650 1 ATOM 7 C CD . LYS 35 35 ? A 14.907 5.732 20.507 1 1 B LYS 0.650 1 ATOM 8 C CE . LYS 35 35 ? A 16.025 4.826 21.041 1 1 B LYS 0.650 1 ATOM 9 N NZ . LYS 35 35 ? A 15.520 3.889 22.077 1 1 B LYS 0.650 1 ATOM 10 N N . GLU 36 36 ? A 11.777 6.012 17.968 1 1 B GLU 0.660 1 ATOM 11 C CA . GLU 36 36 ? A 10.787 6.886 17.361 1 1 B GLU 0.660 1 ATOM 12 C C . GLU 36 36 ? A 11.381 7.992 16.496 1 1 B GLU 0.660 1 ATOM 13 O O . GLU 36 36 ? A 11.109 8.091 15.299 1 1 B GLU 0.660 1 ATOM 14 C CB . GLU 36 36 ? A 9.941 7.485 18.490 1 1 B GLU 0.660 1 ATOM 15 C CG . GLU 36 36 ? A 8.701 8.246 17.980 1 1 B GLU 0.660 1 ATOM 16 C CD . GLU 36 36 ? A 7.650 8.453 19.073 1 1 B GLU 0.660 1 ATOM 17 O OE1 . GLU 36 36 ? A 7.894 8.048 20.237 1 1 B GLU 0.660 1 ATOM 18 O OE2 . GLU 36 36 ? A 6.569 8.984 18.707 1 1 B GLU 0.660 1 ATOM 19 N N . ASP 37 37 ? A 12.347 8.741 17.048 1 1 B ASP 0.600 1 ATOM 20 C CA . ASP 37 37 ? A 13.138 9.788 16.430 1 1 B ASP 0.600 1 ATOM 21 C C . ASP 37 37 ? A 13.919 9.332 15.194 1 1 B ASP 0.600 1 ATOM 22 O O . ASP 37 37 ? A 14.049 10.055 14.209 1 1 B ASP 0.600 1 ATOM 23 C CB . ASP 37 37 ? A 14.116 10.417 17.475 1 1 B ASP 0.600 1 ATOM 24 C CG . ASP 37 37 ? A 13.637 10.271 18.926 1 1 B ASP 0.600 1 ATOM 25 O OD1 . ASP 37 37 ? A 13.618 9.093 19.390 1 1 B ASP 0.600 1 ATOM 26 O OD2 . ASP 37 37 ? A 13.294 11.298 19.550 1 1 B ASP 0.600 1 ATOM 27 N N . ALA 38 38 ? A 14.427 8.080 15.208 1 1 B ALA 0.630 1 ATOM 28 C CA . ALA 38 38 ? A 15.116 7.457 14.086 1 1 B ALA 0.630 1 ATOM 29 C C . ALA 38 38 ? A 14.205 7.258 12.879 1 1 B ALA 0.630 1 ATOM 30 O O . ALA 38 38 ? A 14.548 7.604 11.751 1 1 B ALA 0.630 1 ATOM 31 C CB . ALA 38 38 ? A 15.705 6.092 14.506 1 1 B ALA 0.630 1 ATOM 32 N N . PHE 39 39 ? A 12.980 6.734 13.118 1 1 B PHE 0.570 1 ATOM 33 C CA . PHE 39 39 ? A 11.948 6.604 12.103 1 1 B PHE 0.570 1 ATOM 34 C C . PHE 39 39 ? A 11.424 7.965 11.659 1 1 B PHE 0.570 1 ATOM 35 O O . PHE 39 39 ? A 11.117 8.188 10.489 1 1 B PHE 0.570 1 ATOM 36 C CB . PHE 39 39 ? A 10.780 5.698 12.588 1 1 B PHE 0.570 1 ATOM 37 C CG . PHE 39 39 ? A 9.779 5.384 11.493 1 1 B PHE 0.570 1 ATOM 38 C CD1 . PHE 39 39 ? A 10.197 4.984 10.211 1 1 B PHE 0.570 1 ATOM 39 C CD2 . PHE 39 39 ? A 8.399 5.477 11.748 1 1 B PHE 0.570 1 ATOM 40 C CE1 . PHE 39 39 ? A 9.263 4.719 9.202 1 1 B PHE 0.570 1 ATOM 41 C CE2 . PHE 39 39 ? A 7.463 5.215 10.737 1 1 B PHE 0.570 1 ATOM 42 C CZ . PHE 39 39 ? A 7.896 4.844 9.461 1 1 B PHE 0.570 1 ATOM 43 N N . SER 40 40 ? A 11.321 8.937 12.587 1 1 B SER 0.630 1 ATOM 44 C CA . SER 40 40 ? A 10.996 10.319 12.252 1 1 B SER 0.630 1 ATOM 45 C C . SER 40 40 ? A 11.963 10.951 11.284 1 1 B SER 0.630 1 ATOM 46 O O . SER 40 40 ? A 11.538 11.569 10.315 1 1 B SER 0.630 1 ATOM 47 C CB . SER 40 40 ? A 10.864 11.230 13.487 1 1 B SER 0.630 1 ATOM 48 O OG . SER 40 40 ? A 9.714 10.856 14.255 1 1 B SER 0.630 1 ATOM 49 N N . LYS 41 41 ? A 13.279 10.759 11.461 1 1 B LYS 0.610 1 ATOM 50 C CA . LYS 41 41 ? A 14.287 11.203 10.512 1 1 B LYS 0.610 1 ATOM 51 C C . LYS 41 41 ? A 14.176 10.623 9.109 1 1 B LYS 0.610 1 ATOM 52 O O . LYS 41 41 ? A 14.480 11.311 8.139 1 1 B LYS 0.610 1 ATOM 53 C CB . LYS 41 41 ? A 15.704 10.997 11.081 1 1 B LYS 0.610 1 ATOM 54 C CG . LYS 41 41 ? A 16.072 12.144 12.030 1 1 B LYS 0.610 1 ATOM 55 C CD . LYS 41 41 ? A 17.343 11.891 12.855 1 1 B LYS 0.610 1 ATOM 56 C CE . LYS 41 41 ? A 18.650 11.964 12.063 1 1 B LYS 0.610 1 ATOM 57 N NZ . LYS 41 41 ? A 19.801 11.882 12.992 1 1 B LYS 0.610 1 ATOM 58 N N . LEU 42 42 ? A 13.746 9.352 8.960 1 1 B LEU 0.580 1 ATOM 59 C CA . LEU 42 42 ? A 13.393 8.780 7.668 1 1 B LEU 0.580 1 ATOM 60 C C . LEU 42 42 ? A 12.175 9.459 7.037 1 1 B LEU 0.580 1 ATOM 61 O O . LEU 42 42 ? A 12.201 9.864 5.877 1 1 B LEU 0.580 1 ATOM 62 C CB . LEU 42 42 ? A 13.147 7.258 7.821 1 1 B LEU 0.580 1 ATOM 63 C CG . LEU 42 42 ? A 12.637 6.516 6.566 1 1 B LEU 0.580 1 ATOM 64 C CD1 . LEU 42 42 ? A 13.596 6.626 5.373 1 1 B LEU 0.580 1 ATOM 65 C CD2 . LEU 42 42 ? A 12.361 5.042 6.897 1 1 B LEU 0.580 1 ATOM 66 N N . LYS 43 43 ? A 11.091 9.664 7.818 1 1 B LYS 0.620 1 ATOM 67 C CA . LYS 43 43 ? A 9.882 10.348 7.375 1 1 B LYS 0.620 1 ATOM 68 C C . LYS 43 43 ? A 10.117 11.790 6.955 1 1 B LYS 0.620 1 ATOM 69 O O . LYS 43 43 ? A 9.537 12.266 5.984 1 1 B LYS 0.620 1 ATOM 70 C CB . LYS 43 43 ? A 8.777 10.308 8.456 1 1 B LYS 0.620 1 ATOM 71 C CG . LYS 43 43 ? A 8.166 8.910 8.634 1 1 B LYS 0.620 1 ATOM 72 C CD . LYS 43 43 ? A 7.105 8.825 9.749 1 1 B LYS 0.620 1 ATOM 73 C CE . LYS 43 43 ? A 7.689 9.044 11.150 1 1 B LYS 0.620 1 ATOM 74 N NZ . LYS 43 43 ? A 6.776 8.580 12.222 1 1 B LYS 0.620 1 ATOM 75 N N . GLN 44 44 ? A 11.012 12.506 7.658 1 1 B GLN 0.600 1 ATOM 76 C CA . GLN 44 44 ? A 11.460 13.850 7.335 1 1 B GLN 0.600 1 ATOM 77 C C . GLN 44 44 ? A 12.053 14.007 5.939 1 1 B GLN 0.600 1 ATOM 78 O O . GLN 44 44 ? A 11.920 15.058 5.317 1 1 B GLN 0.600 1 ATOM 79 C CB . GLN 44 44 ? A 12.520 14.336 8.345 1 1 B GLN 0.600 1 ATOM 80 C CG . GLN 44 44 ? A 11.945 14.705 9.728 1 1 B GLN 0.600 1 ATOM 81 C CD . GLN 44 44 ? A 13.068 15.065 10.701 1 1 B GLN 0.600 1 ATOM 82 O OE1 . GLN 44 44 ? A 14.242 14.758 10.511 1 1 B GLN 0.600 1 ATOM 83 N NE2 . GLN 44 44 ? A 12.683 15.754 11.803 1 1 B GLN 0.600 1 ATOM 84 N N . LYS 45 45 ? A 12.723 12.964 5.408 1 1 B LYS 0.520 1 ATOM 85 C CA . LYS 45 45 ? A 13.331 12.987 4.086 1 1 B LYS 0.520 1 ATOM 86 C C . LYS 45 45 ? A 12.322 13.046 2.942 1 1 B LYS 0.520 1 ATOM 87 O O . LYS 45 45 ? A 12.641 13.526 1.858 1 1 B LYS 0.520 1 ATOM 88 C CB . LYS 45 45 ? A 14.258 11.761 3.867 1 1 B LYS 0.520 1 ATOM 89 C CG . LYS 45 45 ? A 15.313 11.513 4.961 1 1 B LYS 0.520 1 ATOM 90 C CD . LYS 45 45 ? A 16.136 12.757 5.326 1 1 B LYS 0.520 1 ATOM 91 C CE . LYS 45 45 ? A 17.223 12.508 6.369 1 1 B LYS 0.520 1 ATOM 92 N NZ . LYS 45 45 ? A 18.085 13.708 6.436 1 1 B LYS 0.520 1 ATOM 93 N N . PHE 46 46 ? A 11.083 12.573 3.199 1 1 B PHE 0.490 1 ATOM 94 C CA . PHE 46 46 ? A 10.029 12.412 2.215 1 1 B PHE 0.490 1 ATOM 95 C C . PHE 46 46 ? A 8.701 13.031 2.676 1 1 B PHE 0.490 1 ATOM 96 O O . PHE 46 46 ? A 7.629 12.684 2.186 1 1 B PHE 0.490 1 ATOM 97 C CB . PHE 46 46 ? A 9.772 10.913 1.927 1 1 B PHE 0.490 1 ATOM 98 C CG . PHE 46 46 ? A 11.034 10.189 1.563 1 1 B PHE 0.490 1 ATOM 99 C CD1 . PHE 46 46 ? A 11.640 10.405 0.316 1 1 B PHE 0.490 1 ATOM 100 C CD2 . PHE 46 46 ? A 11.610 9.265 2.451 1 1 B PHE 0.490 1 ATOM 101 C CE1 . PHE 46 46 ? A 12.791 9.694 -0.047 1 1 B PHE 0.490 1 ATOM 102 C CE2 . PHE 46 46 ? A 12.759 8.551 2.087 1 1 B PHE 0.490 1 ATOM 103 C CZ . PHE 46 46 ? A 13.349 8.763 0.837 1 1 B PHE 0.490 1 ATOM 104 N N . MET 47 47 ? A 8.700 13.982 3.641 1 1 B MET 0.510 1 ATOM 105 C CA . MET 47 47 ? A 7.492 14.689 4.079 1 1 B MET 0.510 1 ATOM 106 C C . MET 47 47 ? A 6.826 15.468 2.945 1 1 B MET 0.510 1 ATOM 107 O O . MET 47 47 ? A 5.605 15.560 2.835 1 1 B MET 0.510 1 ATOM 108 C CB . MET 47 47 ? A 7.796 15.704 5.216 1 1 B MET 0.510 1 ATOM 109 C CG . MET 47 47 ? A 7.859 15.118 6.643 1 1 B MET 0.510 1 ATOM 110 S SD . MET 47 47 ? A 6.380 15.423 7.665 1 1 B MET 0.510 1 ATOM 111 C CE . MET 47 47 ? A 5.931 13.690 7.956 1 1 B MET 0.510 1 ATOM 112 N N . ASN 48 48 ? A 7.661 16.052 2.077 1 1 B ASN 0.400 1 ATOM 113 C CA . ASN 48 48 ? A 7.327 16.808 0.885 1 1 B ASN 0.400 1 ATOM 114 C C . ASN 48 48 ? A 6.702 16.025 -0.304 1 1 B ASN 0.400 1 ATOM 115 O O . ASN 48 48 ? A 6.604 16.570 -1.399 1 1 B ASN 0.400 1 ATOM 116 C CB . ASN 48 48 ? A 8.601 17.614 0.470 1 1 B ASN 0.400 1 ATOM 117 C CG . ASN 48 48 ? A 9.816 16.703 0.271 1 1 B ASN 0.400 1 ATOM 118 O OD1 . ASN 48 48 ? A 9.779 15.770 -0.512 1 1 B ASN 0.400 1 ATOM 119 N ND2 . ASN 48 48 ? A 10.934 16.955 1.001 1 1 B ASN 0.400 1 ATOM 120 N N . GLU 49 49 ? A 6.230 14.773 -0.088 1 1 B GLU 0.370 1 ATOM 121 C CA . GLU 49 49 ? A 5.739 13.843 -1.100 1 1 B GLU 0.370 1 ATOM 122 C C . GLU 49 49 ? A 4.422 13.203 -0.665 1 1 B GLU 0.370 1 ATOM 123 O O . GLU 49 49 ? A 4.013 12.163 -1.175 1 1 B GLU 0.370 1 ATOM 124 C CB . GLU 49 49 ? A 6.739 12.674 -1.317 1 1 B GLU 0.370 1 ATOM 125 C CG . GLU 49 49 ? A 7.992 13.025 -2.159 1 1 B GLU 0.370 1 ATOM 126 C CD . GLU 49 49 ? A 8.665 11.818 -2.830 1 1 B GLU 0.370 1 ATOM 127 O OE1 . GLU 49 49 ? A 9.752 12.034 -3.428 1 1 B GLU 0.370 1 ATOM 128 O OE2 . GLU 49 49 ? A 8.111 10.689 -2.783 1 1 B GLU 0.370 1 ATOM 129 N N . LEU 50 50 ? A 3.707 13.781 0.321 1 1 B LEU 0.510 1 ATOM 130 C CA . LEU 50 50 ? A 2.509 13.156 0.871 1 1 B LEU 0.510 1 ATOM 131 C C . LEU 50 50 ? A 1.378 12.894 -0.129 1 1 B LEU 0.510 1 ATOM 132 O O . LEU 50 50 ? A 0.730 11.848 -0.081 1 1 B LEU 0.510 1 ATOM 133 C CB . LEU 50 50 ? A 1.965 13.945 2.090 1 1 B LEU 0.510 1 ATOM 134 C CG . LEU 50 50 ? A 1.743 13.109 3.376 1 1 B LEU 0.510 1 ATOM 135 C CD1 . LEU 50 50 ? A 0.997 11.779 3.158 1 1 B LEU 0.510 1 ATOM 136 C CD2 . LEU 50 50 ? A 3.065 12.895 4.129 1 1 B LEU 0.510 1 ATOM 137 N N . HIS 51 51 ? A 1.136 13.835 -1.059 1 1 B HIS 0.240 1 ATOM 138 C CA . HIS 51 51 ? A 0.160 13.702 -2.117 1 1 B HIS 0.240 1 ATOM 139 C C . HIS 51 51 ? A 0.648 14.560 -3.310 1 1 B HIS 0.240 1 ATOM 140 O O . HIS 51 51 ? A 1.626 15.336 -3.125 1 1 B HIS 0.240 1 ATOM 141 C CB . HIS 51 51 ? A -1.243 14.254 -1.762 1 1 B HIS 0.240 1 ATOM 142 C CG . HIS 51 51 ? A -1.782 13.820 -0.436 1 1 B HIS 0.240 1 ATOM 143 N ND1 . HIS 51 51 ? A -1.483 14.545 0.709 1 1 B HIS 0.240 1 ATOM 144 C CD2 . HIS 51 51 ? A -2.532 12.738 -0.120 1 1 B HIS 0.240 1 ATOM 145 C CE1 . HIS 51 51 ? A -2.040 13.878 1.690 1 1 B HIS 0.240 1 ATOM 146 N NE2 . HIS 51 51 ? A -2.696 12.774 1.251 1 1 B HIS 0.240 1 ATOM 147 O OXT . HIS 51 51 ? A 0.009 14.483 -4.394 1 1 B HIS 0.240 1 # # loop_ _atom_type.symbol C N O S # # loop_ _ma_qa_metric.id _ma_qa_metric.name _ma_qa_metric.description _ma_qa_metric.type _ma_qa_metric.mode _ma_qa_metric.type_other_details _ma_qa_metric.software_group_id 1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' local . 5 2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' global . 5 3 GMQE 'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.' 'normalized score' global . 6 # # loop_ _ma_qa_metric_global.ordinal_id _ma_qa_metric_global.model_id _ma_qa_metric_global.metric_id _ma_qa_metric_global.metric_value 1 1 2 0.541 2 1 3 0.021 # # loop_ _ma_qa_metric_local.ordinal_id _ma_qa_metric_local.model_id _ma_qa_metric_local.label_asym_id _ma_qa_metric_local.label_seq_id _ma_qa_metric_local.label_comp_id _ma_qa_metric_local.metric_id _ma_qa_metric_local.metric_value 1 1 A 35 LYS 1 0.650 2 1 A 36 GLU 1 0.660 3 1 A 37 ASP 1 0.600 4 1 A 38 ALA 1 0.630 5 1 A 39 PHE 1 0.570 6 1 A 40 SER 1 0.630 7 1 A 41 LYS 1 0.610 8 1 A 42 LEU 1 0.580 9 1 A 43 LYS 1 0.620 10 1 A 44 GLN 1 0.600 11 1 A 45 LYS 1 0.520 12 1 A 46 PHE 1 0.490 13 1 A 47 MET 1 0.510 14 1 A 48 ASN 1 0.400 15 1 A 49 GLU 1 0.370 16 1 A 50 LEU 1 0.510 17 1 A 51 HIS 1 0.240 # # loop_ _pdbx_data_usage.id _pdbx_data_usage.type _pdbx_data_usage.details _pdbx_data_usage.url 1 license ;This SWISS-MODEL protein model is copyright. 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