data_SMR-f9ac0778e09082b5b9d05b97f519549b_1
_entry.id SMR-f9ac0778e09082b5b9d05b97f519549b_1
_struct.entry_id SMR-f9ac0778e09082b5b9d05b97f519549b_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - P34900/ SDC2_RAT, Syndecan-2

Estimated model accuracy of this model is 0.033, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries P34900'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 5 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 25774.019 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP SDC2_RAT P34900 1
;MQRAWILLTLGLMACVSAETRAELTSDKDMYLDSSSIEEASGLYPIDDDDYSSASGSGAYEDKGSPDLTT
SQLIPRISLTSAAPEVETMTLKTQSITPTQTESPEETDKKEFEISEAEEKQDPAVKSTDVYTEKHSDNLF
KRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA
;
Syndecan-2
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 201 1 201
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . SDC2_RAT P34900 . 1 201 10116 'Rattus norvegicus (Rat)' 1995-11-01
02E08455754C5E5A
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A
;MQRAWILLTLGLMACVSAETRAELTSDKDMYLDSSSIEEASGLYPIDDDDYSSASGSGAYEDKGSPDLTT
SQLIPRISLTSAAPEVETMTLKTQSITPTQTESPEETDKKEFEISEAEEKQDPAVKSTDVYTEKHSDNLF
KRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA
;

;MQRAWILLTLGLMACVSAETRAELTSDKDMYLDSSSIEEASGLYPIDDDDYSSASGSGAYEDKGSPDLTT
SQLIPRISLTSAAPEVETMTLKTQSITPTQTESPEETDKKEFEISEAEEKQDPAVKSTDVYTEKHSDNLF
KRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 GLN .
1 3 ARG .
1 4 ALA .
1 5 TRP .
1 6 ILE .
1 7 LEU .
1 8 LEU .
1 9 THR .
1 10 LEU .
1 11 GLY .
1 12 LEU .
1 13 MET .
1 14 ALA .
1 15 CYS .
1 16 VAL .
1 17 SER .
1 18 ALA .
1 19 GLU .
1 20 THR .
1 21 ARG .
1 22 ALA .
1 23 GLU .
1 24 LEU .
1 25 THR .
1 26 SER .
1 27 ASP .
1 28 LYS .
1 29 ASP .
1 30 MET .
1 31 TYR .
1 32 LEU .
1 33 ASP .
1 34 SER .
1 35 SER .
1 36 SER .
1 37 ILE .
1 38 GLU .
1 39 GLU .
1 40 ALA .
1 41 SER .
1 42 GLY .
1 43 LEU .
1 44 TYR .
1 45 PRO .
1 46 ILE .
1 47 ASP .
1 48 ASP .
1 49 ASP .
1 50 ASP .
1 51 TYR .
1 52 SER .
1 53 SER .
1 54 ALA .
1 55 SER .
1 56 GLY .
1 57 SER .
1 58 GLY .
1 59 ALA .
1 60 TYR .
1 61 GLU .
1 62 ASP .
1 63 LYS .
1 64 GLY .
1 65 SER .
1 66 PRO .
1 67 ASP .
1 68 LEU .
1 69 THR .
1 70 THR .
1 71 SER .
1 72 GLN .
1 73 LEU .
1 74 ILE .
1 75 PRO .
1 76 ARG .
1 77 ILE .
1 78 SER .
1 79 LEU .
1 80 THR .
1 81 SER .
1 82 ALA .
1 83 ALA .
1 84 PRO .
1 85 GLU .
1 86 VAL .
1 87 GLU .
1 88 THR .
1 89 MET .
1 90 THR .
1 91 LEU .
1 92 LYS .
1 93 THR .
1 94 GLN .
1 95 SER .
1 96 ILE .
1 97 THR .
1 98 PRO .
1 99 THR .
1 100 GLN .
1 101 THR .
1 102 GLU .
1 103 SER .
1 104 PRO .
1 105 GLU .
1 106 GLU .
1 107 THR .
1 108 ASP .
1 109 LYS .
1 110 LYS .
1 111 GLU .
1 112 PHE .
1 113 GLU .
1 114 ILE .
1 115 SER .
1 116 GLU .
1 117 ALA .
1 118 GLU .
1 119 GLU .
1 120 LYS .
1 121 GLN .
1 122 ASP .
1 123 PRO .
1 124 ALA .
1 125 VAL .
1 126 LYS .
1 127 SER .
1 128 THR .
1 129 ASP .
1 130 VAL .
1 131 TYR .
1 132 THR .
1 133 GLU .
1 134 LYS .
1 135 HIS .
1 136 SER .
1 137 ASP .
1 138 ASN .
1 139 LEU .
1 140 PHE .
1 141 LYS .
1 142 ARG .
1 143 THR .
1 144 GLU .
1 145 VAL .
1 146 LEU .
1 147 ALA .
1 148 ALA .
1 149 VAL .
1 150 ILE .
1 151 ALA .
1 152 GLY .
1 153 GLY .
1 154 VAL .
1 155 ILE .
1 156 GLY .
1 157 PHE .
1 158 LEU .
1 159 PHE .
1 160 ALA .
1 161 ILE .
1 162 PHE .
1 163 LEU .
1 164 ILE .
1 165 LEU .
1 166 LEU .
1 167 LEU .
1 168 VAL .
1 169 TYR .
1 170 ARG .
1 171 MET .
1 172 ARG .
1 173 LYS .
1 174 LYS .
1 175 ASP .
1 176 GLU .
1 177 GLY .
1 178 SER .
1 179 TYR .
1 180 ASP .
1 181 LEU .
1 182 GLY .
1 183 GLU .
1 184 ARG .
1 185 LYS .
1 186 PRO .
1 187 SER .
1 188 SER .
1 189 ALA .
1 190 ALA .
1 191 TYR .
1 192 GLN .
1 193 LYS .
1 194 ALA .
1 195 PRO .
1 196 THR .
1 197 LYS .
1 198 GLU .
1 199 PHE .
1 200 TYR .
1 201 ALA .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 GLN 2 ? ? ? A .
A 1 3 ARG 3 ? ? ? A .
A 1 4 ALA 4 ? ? ? A .
A 1 5 TRP 5 ? ? ? A .
A 1 6 ILE 6 ? ? ? A .
A 1 7 LEU 7 ? ? ? A .
A 1 8 LEU 8 ? ? ? A .
A 1 9 THR 9 ? ? ? A .
A 1 10 LEU 10 ? ? ? A .
A 1 11 GLY 11 ? ? ? A .
A 1 12 LEU 12 ? ? ? A .
A 1 13 MET 13 ? ? ? A .
A 1 14 ALA 14 ? ? ? A .
A 1 15 CYS 15 ? ? ? A .
A 1 16 VAL 16 ? ? ? A .
A 1 17 SER 17 ? ? ? A .
A 1 18 ALA 18 ? ? ? A .
A 1 19 GLU 19 ? ? ? A .
A 1 20 THR 20 ? ? ? A .
A 1 21 ARG 21 ? ? ? A .
A 1 22 ALA 22 ? ? ? A .
A 1 23 GLU 23 ? ? ? A .
A 1 24 LEU 24 ? ? ? A .
A 1 25 THR 25 ? ? ? A .
A 1 26 SER 26 ? ? ? A .
A 1 27 ASP 27 ? ? ? A .
A 1 28 LYS 28 ? ? ? A .
A 1 29 ASP 29 ? ? ? A .
A 1 30 MET 30 ? ? ? A .
A 1 31 TYR 31 ? ? ? A .
A 1 32 LEU 32 ? ? ? A .
A 1 33 ASP 33 ? ? ? A .
A 1 34 SER 34 ? ? ? A .
A 1 35 SER 35 ? ? ? A .
A 1 36 SER 36 ? ? ? A .
A 1 37 ILE 37 ? ? ? A .
A 1 38 GLU 38 ? ? ? A .
A 1 39 GLU 39 ? ? ? A .
A 1 40 ALA 40 ? ? ? A .
A 1 41 SER 41 ? ? ? A .
A 1 42 GLY 42 ? ? ? A .
A 1 43 LEU 43 ? ? ? A .
A 1 44 TYR 44 ? ? ? A .
A 1 45 PRO 45 ? ? ? A .
A 1 46 ILE 46 ? ? ? A .
A 1 47 ASP 47 ? ? ? A .
A 1 48 ASP 48 ? ? ? A .
A 1 49 ASP 49 ? ? ? A .
A 1 50 ASP 50 ? ? ? A .
A 1 51 TYR 51 ? ? ? A .
A 1 52 SER 52 ? ? ? A .
A 1 53 SER 53 ? ? ? A .
A 1 54 ALA 54 ? ? ? A .
A 1 55 SER 55 ? ? ? A .
A 1 56 GLY 56 ? ? ? A .
A 1 57 SER 57 ? ? ? A .
A 1 58 GLY 58 ? ? ? A .
A 1 59 ALA 59 ? ? ? A .
A 1 60 TYR 60 ? ? ? A .
A 1 61 GLU 61 ? ? ? A .
A 1 62 ASP 62 ? ? ? A .
A 1 63 LYS 63 ? ? ? A .
A 1 64 GLY 64 ? ? ? A .
A 1 65 SER 65 ? ? ? A .
A 1 66 PRO 66 ? ? ? A .
A 1 67 ASP 67 ? ? ? A .
A 1 68 LEU 68 ? ? ? A .
A 1 69 THR 69 ? ? ? A .
A 1 70 THR 70 ? ? ? A .
A 1 71 SER 71 ? ? ? A .
A 1 72 GLN 72 ? ? ? A .
A 1 73 LEU 73 ? ? ? A .
A 1 74 ILE 74 ? ? ? A .
A 1 75 PRO 75 ? ? ? A .
A 1 76 ARG 76 ? ? ? A .
A 1 77 ILE 77 ? ? ? A .
A 1 78 SER 78 ? ? ? A .
A 1 79 LEU 79 ? ? ? A .
A 1 80 THR 80 ? ? ? A .
A 1 81 SER 81 ? ? ? A .
A 1 82 ALA 82 ? ? ? A .
A 1 83 ALA 83 ? ? ? A .
A 1 84 PRO 84 ? ? ? A .
A 1 85 GLU 85 ? ? ? A .
A 1 86 VAL 86 ? ? ? A .
A 1 87 GLU 87 ? ? ? A .
A 1 88 THR 88 ? ? ? A .
A 1 89 MET 89 ? ? ? A .
A 1 90 THR 90 ? ? ? A .
A 1 91 LEU 91 ? ? ? A .
A 1 92 LYS 92 ? ? ? A .
A 1 93 THR 93 ? ? ? A .
A 1 94 GLN 94 ? ? ? A .
A 1 95 SER 95 ? ? ? A .
A 1 96 ILE 96 ? ? ? A .
A 1 97 THR 97 ? ? ? A .
A 1 98 PRO 98 ? ? ? A .
A 1 99 THR 99 ? ? ? A .
A 1 100 GLN 100 ? ? ? A .
A 1 101 THR 101 ? ? ? A .
A 1 102 GLU 102 ? ? ? A .
A 1 103 SER 103 ? ? ? A .
A 1 104 PRO 104 ? ? ? A .
A 1 105 GLU 105 ? ? ? A .
A 1 106 GLU 106 ? ? ? A .
A 1 107 THR 107 ? ? ? A .
A 1 108 ASP 108 ? ? ? A .
A 1 109 LYS 109 ? ? ? A .
A 1 110 LYS 110 ? ? ? A .
A 1 111 GLU 111 ? ? ? A .
A 1 112 PHE 112 ? ? ? A .
A 1 113 GLU 113 ? ? ? A .
A 1 114 ILE 114 ? ? ? A .
A 1 115 SER 115 ? ? ? A .
A 1 116 GLU 116 ? ? ? A .
A 1 117 ALA 117 ? ? ? A .
A 1 118 GLU 118 ? ? ? A .
A 1 119 GLU 119 ? ? ? A .
A 1 120 LYS 120 ? ? ? A .
A 1 121 GLN 121 ? ? ? A .
A 1 122 ASP 122 ? ? ? A .
A 1 123 PRO 123 ? ? ? A .
A 1 124 ALA 124 ? ? ? A .
A 1 125 VAL 125 ? ? ? A .
A 1 126 LYS 126 ? ? ? A .
A 1 127 SER 127 ? ? ? A .
A 1 128 THR 128 ? ? ? A .
A 1 129 ASP 129 ? ? ? A .
A 1 130 VAL 130 ? ? ? A .
A 1 131 TYR 131 ? ? ? A .
A 1 132 THR 132 ? ? ? A .
A 1 133 GLU 133 ? ? ? A .
A 1 134 LYS 134 ? ? ? A .
A 1 135 HIS 135 ? ? ? A .
A 1 136 SER 136 ? ? ? A .
A 1 137 ASP 137 ? ? ? A .
A 1 138 ASN 138 ? ? ? A .
A 1 139 LEU 139 ? ? ? A .
A 1 140 PHE 140 ? ? ? A .
A 1 141 LYS 141 ? ? ? A .
A 1 142 ARG 142 ? ? ? A .
A 1 143 THR 143 ? ? ? A .
A 1 144 GLU 144 ? ? ? A .
A 1 145 VAL 145 ? ? ? A .
A 1 146 LEU 146 ? ? ? A .
A 1 147 ALA 147 ? ? ? A .
A 1 148 ALA 148 ? ? ? A .
A 1 149 VAL 149 ? ? ? A .
A 1 150 ILE 150 ? ? ? A .
A 1 151 ALA 151 ? ? ? A .
A 1 152 GLY 152 ? ? ? A .
A 1 153 GLY 153 ? ? ? A .
A 1 154 VAL 154 ? ? ? A .
A 1 155 ILE 155 ? ? ? A .
A 1 156 GLY 156 ? ? ? A .
A 1 157 PHE 157 ? ? ? A .
A 1 158 LEU 158 ? ? ? A .
A 1 159 PHE 159 ? ? ? A .
A 1 160 ALA 160 ? ? ? A .
A 1 161 ILE 161 ? ? ? A .
A 1 162 PHE 162 ? ? ? A .
A 1 163 LEU 163 ? ? ? A .
A 1 164 ILE 164 ? ? ? A .
A 1 165 LEU 165 ? ? ? A .
A 1 166 LEU 166 ? ? ? A .
A 1 167 LEU 167 ? ? ? A .
A 1 168 VAL 168 ? ? ? A .
A 1 169 TYR 169 ? ? ? A .
A 1 170 ARG 170 170 ARG ARG A .
A 1 171 MET 171 171 MET MET A .
A 1 172 ARG 172 172 ARG ARG A .
A 1 173 LYS 173 173 LYS LYS A .
A 1 174 LYS 174 174 LYS LYS A .
A 1 175 ASP 175 175 ASP ASP A .
A 1 176 GLU 176 176 GLU GLU A .
A 1 177 GLY 177 177 GLY GLY A .
A 1 178 SER 178 178 SER SER A .
A 1 179 TYR 179 179 TYR TYR A .
A 1 180 ASP 180 180 ASP ASP A .
A 1 181 LEU 181 181 LEU LEU A .
A 1 182 GLY 182 182 GLY GLY A .
A 1 183 GLU 183 183 GLU GLU A .
A 1 184 ARG 184 184 ARG ARG A .
A 1 185 LYS 185 185 LYS LYS A .
A 1 186 PRO 186 186 PRO PRO A .
A 1 187 SER 187 187 SER SER A .
A 1 188 SER 188 188 SER SER A .
A 1 189 ALA 189 189 ALA ALA A .
A 1 190 ALA 190 190 ALA ALA A .
A 1 191 TYR 191 191 TYR TYR A .
A 1 192 GLN 192 192 GLN GLN A .
A 1 193 LYS 193 193 LYS LYS A .
A 1 194 ALA 194 194 ALA ALA A .
A 1 195 PRO 195 195 PRO PRO A .
A 1 196 THR 196 196 THR THR A .
A 1 197 LYS 197 197 LYS LYS A .
A 1 198 GLU 198 198 GLU GLU A .
A 1 199 PHE 199 199 PHE PHE A .
A 1 200 TYR 200 200 TYR TYR A .
A 1 201 ALA 201 201 ALA ALA A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1 'SYNDECAN-4 {PDB ID=1ejp, label_asym_id=A, auth_asym_id=A, SMTL ID=1ejp.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by BLAST to 1ejp, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-14
6 PDB https://www.wwpdb.org . 2024-11-08
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 RMKKKDEGSYDLGKKPIYKKAPTNEFYA RMKKKDEGSYDLGKKPIYKKAPTNEFYA
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 1 28
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 1ejp 2024-05-22
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 201
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 201 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'BLAST e-value' . 6.26e-06 82.143
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MQRAWILLTLGLMACVSAETRAELTSDKDMYLDSSSIEEASGLYPIDDDDYSSASGSGAYEDKGSPDLTTSQLIPRISLTSAAPEVETMTLKTQSITPTQTESPEETDKKEFEISEAEEKQDPAVKSTDVYTEKHSDNLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA
2 1 2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------RMKKKDEGSYDLG-KKP---IYKKAPTNEFYA
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 1ejp.1, oligomeric state (monomer) as predicted'
4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ARG 170 170 ? A 7.234 -23.270 -24.946 1 1 A ARG 0.690 1
ATOM 2 C CA . ARG 170 170 ? A 5.823 -23.201 -25.469 1 1 A ARG 0.690 1
ATOM 3 C C . ARG 170 170 ? A 5.648 -23.378 -26.969 1 1 A ARG 0.690 1
ATOM 4 O O . ARG 170 170 ? A 4.777 -22.772 -27.575 1 1 A ARG 0.690 1
ATOM 5 C CB . ARG 170 170 ? A 5.106 -21.908 -24.935 1 1 A ARG 0.690 1
ATOM 6 C CG . ARG 170 170 ? A 4.218 -22.149 -23.690 1 1 A ARG 0.690 1
ATOM 7 C CD . ARG 170 170 ? A 4.065 -21.003 -22.701 1 1 A ARG 0.690 1
ATOM 8 N NE . ARG 170 170 ? A 3.030 -21.446 -21.709 1 1 A ARG 0.690 1
ATOM 9 C CZ . ARG 170 170 ? A 2.212 -20.517 -21.189 1 1 A ARG 0.690 1
ATOM 10 N NH1 . ARG 170 170 ? A 1.248 -19.975 -21.907 1 1 A ARG 0.690 1
ATOM 11 N NH2 . ARG 170 170 ? A 2.519 -20.076 -19.978 1 1 A ARG 0.690 1
ATOM 12 N N . MET 171 171 ? A 6.421 -24.261 -27.616 1 1 A MET 0.470 1
ATOM 13 C CA . MET 171 171 ? A 6.472 -24.349 -29.048 1 1 A MET 0.470 1
ATOM 14 C C . MET 171 171 ? A 5.876 -25.691 -29.390 1 1 A MET 0.470 1
ATOM 15 O O . MET 171 171 ? A 6.358 -26.696 -28.875 1 1 A MET 0.470 1
ATOM 16 C CB . MET 171 171 ? A 7.953 -24.292 -29.478 1 1 A MET 0.470 1
ATOM 17 C CG . MET 171 171 ? A 8.150 -24.200 -30.997 1 1 A MET 0.470 1
ATOM 18 S SD . MET 171 171 ? A 8.420 -25.802 -31.810 1 1 A MET 0.470 1
ATOM 19 C CE . MET 171 171 ? A 10.089 -25.398 -32.377 1 1 A MET 0.470 1
ATOM 20 N N . ARG 172 172 ? A 4.783 -25.727 -30.185 1 1 A ARG 0.330 1
ATOM 21 C CA . ARG 172 172 ? A 4.172 -26.934 -30.735 1 1 A ARG 0.330 1
ATOM 22 C C . ARG 172 172 ? A 3.827 -28.034 -29.747 1 1 A ARG 0.330 1
ATOM 23 O O . ARG 172 172 ? A 4.119 -29.206 -29.948 1 1 A ARG 0.330 1
ATOM 24 C CB . ARG 172 172 ? A 5.009 -27.544 -31.869 1 1 A ARG 0.330 1
ATOM 25 C CG . ARG 172 172 ? A 5.189 -26.621 -33.077 1 1 A ARG 0.330 1
ATOM 26 C CD . ARG 172 172 ? A 6.077 -27.309 -34.105 1 1 A ARG 0.330 1
ATOM 27 N NE . ARG 172 172 ? A 6.278 -26.351 -35.234 1 1 A ARG 0.330 1
ATOM 28 C CZ . ARG 172 172 ? A 7.037 -26.638 -36.298 1 1 A ARG 0.330 1
ATOM 29 N NH1 . ARG 172 172 ? A 7.670 -27.803 -36.389 1 1 A ARG 0.330 1
ATOM 30 N NH2 . ARG 172 172 ? A 7.165 -25.755 -37.285 1 1 A ARG 0.330 1
ATOM 31 N N . LYS 173 173 ? A 3.167 -27.657 -28.648 1 1 A LYS 0.390 1
ATOM 32 C CA . LYS 173 173 ? A 3.077 -28.515 -27.493 1 1 A LYS 0.390 1
ATOM 33 C C . LYS 173 173 ? A 1.681 -28.500 -26.908 1 1 A LYS 0.390 1
ATOM 34 O O . LYS 173 173 ? A 1.381 -29.258 -25.998 1 1 A LYS 0.390 1
ATOM 35 C CB . LYS 173 173 ? A 4.125 -28.041 -26.449 1 1 A LYS 0.390 1
ATOM 36 C CG . LYS 173 173 ? A 4.038 -26.559 -26.043 1 1 A LYS 0.390 1
ATOM 37 C CD . LYS 173 173 ? A 3.444 -26.364 -24.648 1 1 A LYS 0.390 1
ATOM 38 C CE . LYS 173 173 ? A 2.702 -25.045 -24.508 1 1 A LYS 0.390 1
ATOM 39 N NZ . LYS 173 173 ? A 2.220 -24.912 -23.125 1 1 A LYS 0.390 1
ATOM 40 N N . LYS 174 174 ? A 0.770 -27.667 -27.483 1 1 A LYS 0.620 1
ATOM 41 C CA . LYS 174 174 ? A -0.583 -27.426 -26.989 1 1 A LYS 0.620 1
ATOM 42 C C . LYS 174 174 ? A -0.635 -26.928 -25.543 1 1 A LYS 0.620 1
ATOM 43 O O . LYS 174 174 ? A 0.428 -26.624 -25.030 1 1 A LYS 0.620 1
ATOM 44 C CB . LYS 174 174 ? A -1.405 -28.708 -27.164 1 1 A LYS 0.620 1
ATOM 45 C CG . LYS 174 174 ? A -2.671 -28.466 -27.968 1 1 A LYS 0.620 1
ATOM 46 C CD . LYS 174 174 ? A -3.765 -29.458 -27.575 1 1 A LYS 0.620 1
ATOM 47 C CE . LYS 174 174 ? A -4.035 -30.524 -28.632 1 1 A LYS 0.620 1
ATOM 48 N NZ . LYS 174 174 ? A -2.866 -31.424 -28.747 1 1 A LYS 0.620 1
ATOM 49 N N . ASP 175 175 ? A -1.771 -26.800 -24.814 1 1 A ASP 0.600 1
ATOM 50 C CA . ASP 175 175 ? A -1.722 -26.480 -23.388 1 1 A ASP 0.600 1
ATOM 51 C C . ASP 175 175 ? A -1.344 -25.009 -23.148 1 1 A ASP 0.600 1
ATOM 52 O O . ASP 175 175 ? A -0.284 -24.503 -23.583 1 1 A ASP 0.600 1
ATOM 53 C CB . ASP 175 175 ? A -0.843 -27.530 -22.619 1 1 A ASP 0.600 1
ATOM 54 C CG . ASP 175 175 ? A -1.405 -27.992 -21.291 1 1 A ASP 0.600 1
ATOM 55 O OD1 . ASP 175 175 ? A -1.305 -27.197 -20.326 1 1 A ASP 0.600 1
ATOM 56 O OD2 . ASP 175 175 ? A -1.857 -29.164 -21.228 1 1 A ASP 0.600 1
ATOM 57 N N . GLU 176 176 ? A -2.143 -24.197 -22.494 1 1 A GLU 0.600 1
ATOM 58 C CA . GLU 176 176 ? A -1.850 -22.799 -22.321 1 1 A GLU 0.600 1
ATOM 59 C C . GLU 176 176 ? A -1.718 -22.458 -20.858 1 1 A GLU 0.600 1
ATOM 60 O O . GLU 176 176 ? A -1.574 -23.303 -19.983 1 1 A GLU 0.600 1
ATOM 61 C CB . GLU 176 176 ? A -2.853 -21.927 -23.110 1 1 A GLU 0.600 1
ATOM 62 C CG . GLU 176 176 ? A -4.334 -22.146 -22.720 1 1 A GLU 0.600 1
ATOM 63 C CD . GLU 176 176 ? A -4.956 -23.337 -23.450 1 1 A GLU 0.600 1
ATOM 64 O OE1 . GLU 176 176 ? A -5.472 -23.124 -24.576 1 1 A GLU 0.600 1
ATOM 65 O OE2 . GLU 176 176 ? A -4.880 -24.468 -22.907 1 1 A GLU 0.600 1
ATOM 66 N N . GLY 177 177 ? A -1.642 -21.153 -20.553 1 1 A GLY 0.580 1
ATOM 67 C CA . GLY 177 177 ? A -1.739 -20.696 -19.179 1 1 A GLY 0.580 1
ATOM 68 C C . GLY 177 177 ? A -3.150 -20.290 -18.917 1 1 A GLY 0.580 1
ATOM 69 O O . GLY 177 177 ? A -4.083 -21.069 -19.051 1 1 A GLY 0.580 1
ATOM 70 N N . SER 178 178 ? A -3.346 -19.046 -18.492 1 1 A SER 0.520 1
ATOM 71 C CA . SER 178 178 ? A -4.640 -18.564 -18.093 1 1 A SER 0.520 1
ATOM 72 C C . SER 178 178 ? A -4.436 -17.101 -17.923 1 1 A SER 0.520 1
ATOM 73 O O . SER 178 178 ? A -3.289 -16.649 -17.973 1 1 A SER 0.520 1
ATOM 74 C CB . SER 178 178 ? A -5.146 -19.112 -16.742 1 1 A SER 0.520 1
ATOM 75 O OG . SER 178 178 ? A -6.573 -19.102 -16.686 1 1 A SER 0.520 1
ATOM 76 N N . TYR 179 179 ? A -5.526 -16.361 -17.679 1 1 A TYR 0.380 1
ATOM 77 C CA . TYR 179 179 ? A -5.584 -14.917 -17.571 1 1 A TYR 0.380 1
ATOM 78 C C . TYR 179 179 ? A -5.137 -14.209 -18.851 1 1 A TYR 0.380 1
ATOM 79 O O . TYR 179 179 ? A -4.831 -14.867 -19.859 1 1 A TYR 0.380 1
ATOM 80 C CB . TYR 179 179 ? A -4.815 -14.397 -16.310 1 1 A TYR 0.380 1
ATOM 81 C CG . TYR 179 179 ? A -5.374 -14.956 -15.021 1 1 A TYR 0.380 1
ATOM 82 C CD1 . TYR 179 179 ? A -6.457 -14.330 -14.385 1 1 A TYR 0.380 1
ATOM 83 C CD2 . TYR 179 179 ? A -4.799 -16.085 -14.410 1 1 A TYR 0.380 1
ATOM 84 C CE1 . TYR 179 179 ? A -6.962 -14.828 -13.174 1 1 A TYR 0.380 1
ATOM 85 C CE2 . TYR 179 179 ? A -5.312 -16.594 -13.207 1 1 A TYR 0.380 1
ATOM 86 C CZ . TYR 179 179 ? A -6.396 -15.962 -12.588 1 1 A TYR 0.380 1
ATOM 87 O OH . TYR 179 179 ? A -6.916 -16.439 -11.368 1 1 A TYR 0.380 1
ATOM 88 N N . ASP 180 180 ? A -5.061 -12.871 -18.873 1 1 A ASP 0.540 1
ATOM 89 C CA . ASP 180 180 ? A -4.548 -12.117 -19.997 1 1 A ASP 0.540 1
ATOM 90 C C . ASP 180 180 ? A -3.308 -11.382 -19.525 1 1 A ASP 0.540 1
ATOM 91 O O . ASP 180 180 ? A -3.268 -10.817 -18.422 1 1 A ASP 0.540 1
ATOM 92 C CB . ASP 180 180 ? A -5.564 -11.103 -20.597 1 1 A ASP 0.540 1
ATOM 93 C CG . ASP 180 180 ? A -6.783 -11.810 -21.171 1 1 A ASP 0.540 1
ATOM 94 O OD1 . ASP 180 180 ? A -6.614 -12.921 -21.729 1 1 A ASP 0.540 1
ATOM 95 O OD2 . ASP 180 180 ? A -7.884 -11.210 -21.093 1 1 A ASP 0.540 1
ATOM 96 N N . LEU 181 181 ? A -2.239 -11.380 -20.338 1 1 A LEU 0.540 1
ATOM 97 C CA . LEU 181 181 ? A -0.965 -10.755 -20.013 1 1 A LEU 0.540 1
ATOM 98 C C . LEU 181 181 ? A -0.769 -9.430 -20.726 1 1 A LEU 0.540 1
ATOM 99 O O . LEU 181 181 ? A 0.299 -8.829 -20.680 1 1 A LEU 0.540 1
ATOM 100 C CB . LEU 181 181 ? A 0.230 -11.653 -20.402 1 1 A LEU 0.540 1
ATOM 101 C CG . LEU 181 181 ? A 0.274 -13.007 -19.675 1 1 A LEU 0.540 1
ATOM 102 C CD1 . LEU 181 181 ? A 1.462 -13.814 -20.216 1 1 A LEU 0.540 1
ATOM 103 C CD2 . LEU 181 181 ? A 0.372 -12.842 -18.148 1 1 A LEU 0.540 1
ATOM 104 N N . GLY 182 182 ? A -1.818 -8.933 -21.415 1 1 A GLY 0.600 1
ATOM 105 C CA . GLY 182 182 ? A -1.759 -7.694 -22.186 1 1 A GLY 0.600 1
ATOM 106 C C . GLY 182 182 ? A -1.520 -6.439 -21.376 1 1 A GLY 0.600 1
ATOM 107 O O . GLY 182 182 ? A -1.002 -5.460 -21.892 1 1 A GLY 0.600 1
ATOM 108 N N . GLU 183 183 ? A -1.866 -6.485 -20.075 1 1 A GLU 0.600 1
ATOM 109 C CA . GLU 183 183 ? A -1.784 -5.388 -19.131 1 1 A GLU 0.600 1
ATOM 110 C C . GLU 183 183 ? A -0.743 -5.691 -18.069 1 1 A GLU 0.600 1
ATOM 111 O O . GLU 183 183 ? A -1.059 -5.958 -16.912 1 1 A GLU 0.600 1
ATOM 112 C CB . GLU 183 183 ? A -3.158 -5.143 -18.458 1 1 A GLU 0.600 1
ATOM 113 C CG . GLU 183 183 ? A -4.244 -4.700 -19.468 1 1 A GLU 0.600 1
ATOM 114 C CD . GLU 183 183 ? A -3.989 -3.302 -20.034 1 1 A GLU 0.600 1
ATOM 115 O OE1 . GLU 183 183 ? A -3.151 -2.557 -19.463 1 1 A GLU 0.600 1
ATOM 116 O OE2 . GLU 183 183 ? A -4.658 -2.975 -21.047 1 1 A GLU 0.600 1
ATOM 117 N N . ARG 184 184 ? A 0.549 -5.707 -18.448 1 1 A ARG 0.320 1
ATOM 118 C CA . ARG 184 184 ? A 1.660 -5.982 -17.549 1 1 A ARG 0.320 1
ATOM 119 C C . ARG 184 184 ? A 1.768 -5.131 -16.273 1 1 A ARG 0.320 1
ATOM 120 O O . ARG 184 184 ? A 1.608 -5.623 -15.168 1 1 A ARG 0.320 1
ATOM 121 C CB . ARG 184 184 ? A 2.987 -5.794 -18.319 1 1 A ARG 0.320 1
ATOM 122 C CG . ARG 184 184 ? A 3.265 -6.867 -19.385 1 1 A ARG 0.320 1
ATOM 123 C CD . ARG 184 184 ? A 4.514 -6.527 -20.199 1 1 A ARG 0.320 1
ATOM 124 N NE . ARG 184 184 ? A 4.714 -7.623 -21.197 1 1 A ARG 0.320 1
ATOM 125 C CZ . ARG 184 184 ? A 5.644 -7.581 -22.161 1 1 A ARG 0.320 1
ATOM 126 N NH1 . ARG 184 184 ? A 6.457 -6.536 -22.286 1 1 A ARG 0.320 1
ATOM 127 N NH2 . ARG 184 184 ? A 5.769 -8.592 -23.018 1 1 A ARG 0.320 1
ATOM 128 N N . LYS 185 185 ? A 2.098 -3.826 -16.398 1 1 A LYS 0.520 1
ATOM 129 C CA . LYS 185 185 ? A 2.133 -2.902 -15.283 1 1 A LYS 0.520 1
ATOM 130 C C . LYS 185 185 ? A 1.532 -1.574 -15.744 1 1 A LYS 0.520 1
ATOM 131 O O . LYS 185 185 ? A 2.182 -0.875 -16.520 1 1 A LYS 0.520 1
ATOM 132 C CB . LYS 185 185 ? A 3.580 -2.679 -14.758 1 1 A LYS 0.520 1
ATOM 133 C CG . LYS 185 185 ? A 4.179 -3.969 -14.173 1 1 A LYS 0.520 1
ATOM 134 C CD . LYS 185 185 ? A 5.592 -3.797 -13.606 1 1 A LYS 0.520 1
ATOM 135 C CE . LYS 185 185 ? A 6.163 -5.105 -13.047 1 1 A LYS 0.520 1
ATOM 136 N NZ . LYS 185 185 ? A 7.530 -4.874 -12.529 1 1 A LYS 0.520 1
ATOM 137 N N . PRO 186 186 ? A 0.339 -1.163 -15.297 1 1 A PRO 0.720 1
ATOM 138 C CA . PRO 186 186 ? A -0.260 0.114 -15.672 1 1 A PRO 0.720 1
ATOM 139 C C . PRO 186 186 ? A 0.163 1.156 -14.678 1 1 A PRO 0.720 1
ATOM 140 O O . PRO 186 186 ? A -0.188 2.314 -14.833 1 1 A PRO 0.720 1
ATOM 141 C CB . PRO 186 186 ? A -1.775 -0.119 -15.565 1 1 A PRO 0.720 1
ATOM 142 C CG . PRO 186 186 ? A -1.922 -1.235 -14.530 1 1 A PRO 0.720 1
ATOM 143 C CD . PRO 186 186 ? A -0.637 -2.054 -14.672 1 1 A PRO 0.720 1
ATOM 144 N N . SER 187 187 ? A 0.909 0.775 -13.634 1 1 A SER 0.720 1
ATOM 145 C CA . SER 187 187 ? A 1.366 1.672 -12.598 1 1 A SER 0.720 1
ATOM 146 C C . SER 187 187 ? A 2.840 1.985 -12.730 1 1 A SER 0.720 1
ATOM 147 O O . SER 187 187 ? A 3.499 1.633 -13.707 1 1 A SER 0.720 1
ATOM 148 C CB . SER 187 187 ? A 1.020 1.136 -11.179 1 1 A SER 0.720 1
ATOM 149 O OG . SER 187 187 ? A 1.760 -0.041 -10.845 1 1 A SER 0.720 1
ATOM 150 N N . SER 188 188 ? A 3.402 2.702 -11.734 1 1 A SER 0.710 1
ATOM 151 C CA . SER 188 188 ? A 4.824 3.013 -11.666 1 1 A SER 0.710 1
ATOM 152 C C . SER 188 188 ? A 5.302 3.921 -12.804 1 1 A SER 0.710 1
ATOM 153 O O . SER 188 188 ? A 4.913 5.083 -12.899 1 1 A SER 0.710 1
ATOM 154 C CB . SER 188 188 ? A 5.667 1.716 -11.476 1 1 A SER 0.710 1
ATOM 155 O OG . SER 188 188 ? A 7.036 1.990 -11.177 1 1 A SER 0.710 1
ATOM 156 N N . ALA 189 189 ? A 6.141 3.383 -13.708 1 1 A ALA 0.720 1
ATOM 157 C CA . ALA 189 189 ? A 6.655 4.011 -14.907 1 1 A ALA 0.720 1
ATOM 158 C C . ALA 189 189 ? A 5.637 4.207 -16.039 1 1 A ALA 0.720 1
ATOM 159 O O . ALA 189 189 ? A 5.879 4.961 -16.970 1 1 A ALA 0.720 1
ATOM 160 C CB . ALA 189 189 ? A 7.817 3.154 -15.450 1 1 A ALA 0.720 1
ATOM 161 N N . ALA 190 190 ? A 4.467 3.536 -15.995 1 1 A ALA 0.540 1
ATOM 162 C CA . ALA 190 190 ? A 3.415 3.720 -16.974 1 1 A ALA 0.540 1
ATOM 163 C C . ALA 190 190 ? A 2.683 5.062 -16.853 1 1 A ALA 0.540 1
ATOM 164 O O . ALA 190 190 ? A 2.256 5.652 -17.842 1 1 A ALA 0.540 1
ATOM 165 C CB . ALA 190 190 ? A 2.450 2.543 -16.810 1 1 A ALA 0.540 1
ATOM 166 N N . TYR 191 191 ? A 2.547 5.597 -15.619 1 1 A TYR 0.400 1
ATOM 167 C CA . TYR 191 191 ? A 1.895 6.873 -15.348 1 1 A TYR 0.400 1
ATOM 168 C C . TYR 191 191 ? A 2.883 8.031 -15.404 1 1 A TYR 0.400 1
ATOM 169 O O . TYR 191 191 ? A 3.105 8.723 -14.419 1 1 A TYR 0.400 1
ATOM 170 C CB . TYR 191 191 ? A 1.237 6.917 -13.941 1 1 A TYR 0.400 1
ATOM 171 C CG . TYR 191 191 ? A 0.074 5.986 -13.811 1 1 A TYR 0.400 1
ATOM 172 C CD1 . TYR 191 191 ? A -0.998 6.030 -14.715 1 1 A TYR 0.400 1
ATOM 173 C CD2 . TYR 191 191 ? A 0.017 5.097 -12.730 1 1 A TYR 0.400 1
ATOM 174 C CE1 . TYR 191 191 ? A -2.088 5.164 -14.565 1 1 A TYR 0.400 1
ATOM 175 C CE2 . TYR 191 191 ? A -1.089 4.250 -12.562 1 1 A TYR 0.400 1
ATOM 176 C CZ . TYR 191 191 ? A -2.132 4.272 -13.493 1 1 A TYR 0.400 1
ATOM 177 O OH . TYR 191 191 ? A -3.214 3.381 -13.368 1 1 A TYR 0.400 1
ATOM 178 N N . GLN 192 192 ? A 3.515 8.259 -16.570 1 1 A GLN 0.460 1
ATOM 179 C CA . GLN 192 192 ? A 4.606 9.205 -16.701 1 1 A GLN 0.460 1
ATOM 180 C C . GLN 192 192 ? A 4.475 9.955 -17.995 1 1 A GLN 0.460 1
ATOM 181 O O . GLN 192 192 ? A 4.085 9.384 -19.016 1 1 A GLN 0.460 1
ATOM 182 C CB . GLN 192 192 ? A 5.986 8.508 -16.770 1 1 A GLN 0.460 1
ATOM 183 C CG . GLN 192 192 ? A 6.332 7.659 -15.533 1 1 A GLN 0.460 1
ATOM 184 C CD . GLN 192 192 ? A 6.562 8.511 -14.289 1 1 A GLN 0.460 1
ATOM 185 O OE1 . GLN 192 192 ? A 7.068 9.619 -14.344 1 1 A GLN 0.460 1
ATOM 186 N NE2 . GLN 192 192 ? A 6.190 7.942 -13.111 1 1 A GLN 0.460 1
ATOM 187 N N . LYS 193 193 ? A 4.821 11.254 -17.987 1 1 A LYS 0.520 1
ATOM 188 C CA . LYS 193 193 ? A 4.595 12.137 -19.109 1 1 A LYS 0.520 1
ATOM 189 C C . LYS 193 193 ? A 4.984 13.567 -18.790 1 1 A LYS 0.520 1
ATOM 190 O O . LYS 193 193 ? A 4.425 14.171 -17.872 1 1 A LYS 0.520 1
ATOM 191 C CB . LYS 193 193 ? A 3.094 12.166 -19.540 1 1 A LYS 0.520 1
ATOM 192 C CG . LYS 193 193 ? A 2.880 11.575 -20.941 1 1 A LYS 0.520 1
ATOM 193 C CD . LYS 193 193 ? A 2.126 12.540 -21.864 1 1 A LYS 0.520 1
ATOM 194 C CE . LYS 193 193 ? A 2.653 12.535 -23.301 1 1 A LYS 0.520 1
ATOM 195 N NZ . LYS 193 193 ? A 2.426 13.868 -23.902 1 1 A LYS 0.520 1
ATOM 196 N N . ALA 194 194 ? A 5.915 14.179 -19.549 1 1 A ALA 0.490 1
ATOM 197 C CA . ALA 194 194 ? A 6.294 15.555 -19.319 1 1 A ALA 0.490 1
ATOM 198 C C . ALA 194 194 ? A 6.895 16.161 -20.602 1 1 A ALA 0.490 1
ATOM 199 O O . ALA 194 194 ? A 7.410 15.393 -21.416 1 1 A ALA 0.490 1
ATOM 200 C CB . ALA 194 194 ? A 7.266 15.617 -18.122 1 1 A ALA 0.490 1
ATOM 201 N N . PRO 195 195 ? A 6.804 17.474 -20.879 1 1 A PRO 0.490 1
ATOM 202 C CA . PRO 195 195 ? A 7.585 18.174 -21.901 1 1 A PRO 0.490 1
ATOM 203 C C . PRO 195 195 ? A 8.973 18.529 -21.397 1 1 A PRO 0.490 1
ATOM 204 O O . PRO 195 195 ? A 9.272 18.305 -20.233 1 1 A PRO 0.490 1
ATOM 205 C CB . PRO 195 195 ? A 6.776 19.463 -22.126 1 1 A PRO 0.490 1
ATOM 206 C CG . PRO 195 195 ? A 6.201 19.775 -20.743 1 1 A PRO 0.490 1
ATOM 207 C CD . PRO 195 195 ? A 5.950 18.392 -20.137 1 1 A PRO 0.490 1
ATOM 208 N N . THR 196 196 ? A 9.813 19.116 -22.272 1 1 A THR 0.450 1
ATOM 209 C CA . THR 196 196 ? A 11.247 19.318 -22.069 1 1 A THR 0.450 1
ATOM 210 C C . THR 196 196 ? A 11.590 20.476 -22.967 1 1 A THR 0.450 1
ATOM 211 O O . THR 196 196 ? A 11.997 20.289 -24.112 1 1 A THR 0.450 1
ATOM 212 C CB . THR 196 196 ? A 12.097 18.096 -22.458 1 1 A THR 0.450 1
ATOM 213 O OG1 . THR 196 196 ? A 11.845 17.044 -21.544 1 1 A THR 0.450 1
ATOM 214 C CG2 . THR 196 196 ? A 13.620 18.309 -22.392 1 1 A THR 0.450 1
ATOM 215 N N . LYS 197 197 ? A 11.363 21.727 -22.530 1 1 A LYS 0.430 1
ATOM 216 C CA . LYS 197 197 ? A 11.759 22.896 -23.285 1 1 A LYS 0.430 1
ATOM 217 C C . LYS 197 197 ? A 11.735 24.123 -22.401 1 1 A LYS 0.430 1
ATOM 218 O O . LYS 197 197 ? A 10.922 24.209 -21.464 1 1 A LYS 0.430 1
ATOM 219 C CB . LYS 197 197 ? A 10.839 23.144 -24.518 1 1 A LYS 0.430 1
ATOM 220 C CG . LYS 197 197 ? A 9.366 23.379 -24.145 1 1 A LYS 0.430 1
ATOM 221 C CD . LYS 197 197 ? A 8.429 23.423 -25.356 1 1 A LYS 0.430 1
ATOM 222 C CE . LYS 197 197 ? A 6.983 23.675 -24.928 1 1 A LYS 0.430 1
ATOM 223 N NZ . LYS 197 197 ? A 6.111 23.728 -26.118 1 1 A LYS 0.430 1
ATOM 224 N N . GLU 198 198 ? A 12.583 25.121 -22.680 1 1 A GLU 0.400 1
ATOM 225 C CA . GLU 198 198 ? A 12.610 26.391 -21.992 1 1 A GLU 0.400 1
ATOM 226 C C . GLU 198 198 ? A 11.730 27.409 -22.690 1 1 A GLU 0.400 1
ATOM 227 O O . GLU 198 198 ? A 11.576 27.415 -23.915 1 1 A GLU 0.400 1
ATOM 228 C CB . GLU 198 198 ? A 14.064 26.901 -21.836 1 1 A GLU 0.400 1
ATOM 229 C CG . GLU 198 198 ? A 14.941 25.912 -21.018 1 1 A GLU 0.400 1
ATOM 230 C CD . GLU 198 198 ? A 16.018 25.153 -21.802 1 1 A GLU 0.400 1
ATOM 231 O OE1 . GLU 198 198 ? A 16.467 25.636 -22.868 1 1 A GLU 0.400 1
ATOM 232 O OE2 . GLU 198 198 ? A 16.394 24.059 -21.308 1 1 A GLU 0.400 1
ATOM 233 N N . PHE 199 199 ? A 11.101 28.319 -21.930 1 1 A PHE 0.390 1
ATOM 234 C CA . PHE 199 199 ? A 10.201 29.344 -22.446 1 1 A PHE 0.390 1
ATOM 235 C C . PHE 199 199 ? A 10.939 30.590 -22.965 1 1 A PHE 0.390 1
ATOM 236 O O . PHE 199 199 ? A 10.409 31.699 -22.987 1 1 A PHE 0.390 1
ATOM 237 C CB . PHE 199 199 ? A 9.083 29.673 -21.391 1 1 A PHE 0.390 1
ATOM 238 C CG . PHE 199 199 ? A 9.509 30.590 -20.260 1 1 A PHE 0.390 1
ATOM 239 C CD1 . PHE 199 199 ? A 10.437 30.203 -19.277 1 1 A PHE 0.390 1
ATOM 240 C CD2 . PHE 199 199 ? A 9.046 31.918 -20.258 1 1 A PHE 0.390 1
ATOM 241 C CE1 . PHE 199 199 ? A 10.946 31.143 -18.369 1 1 A PHE 0.390 1
ATOM 242 C CE2 . PHE 199 199 ? A 9.563 32.860 -19.364 1 1 A PHE 0.390 1
ATOM 243 C CZ . PHE 199 199 ? A 10.517 32.473 -18.420 1 1 A PHE 0.390 1
ATOM 244 N N . TYR 200 200 ? A 12.190 30.441 -23.415 1 1 A TYR 0.240 1
ATOM 245 C CA . TYR 200 200 ? A 13.104 31.510 -23.708 1 1 A TYR 0.240 1
ATOM 246 C C . TYR 200 200 ? A 13.745 31.143 -25.034 1 1 A TYR 0.240 1
ATOM 247 O O . TYR 200 200 ? A 13.939 29.966 -25.331 1 1 A TYR 0.240 1
ATOM 248 C CB . TYR 200 200 ? A 14.090 31.702 -22.509 1 1 A TYR 0.240 1
ATOM 249 C CG . TYR 200 200 ? A 15.177 32.717 -22.751 1 1 A TYR 0.240 1
ATOM 250 C CD1 . TYR 200 200 ? A 14.920 33.969 -23.339 1 1 A TYR 0.240 1
ATOM 251 C CD2 . TYR 200 200 ? A 16.507 32.365 -22.471 1 1 A TYR 0.240 1
ATOM 252 C CE1 . TYR 200 200 ? A 15.981 34.812 -23.705 1 1 A TYR 0.240 1
ATOM 253 C CE2 . TYR 200 200 ? A 17.562 33.223 -22.803 1 1 A TYR 0.240 1
ATOM 254 C CZ . TYR 200 200 ? A 17.298 34.450 -23.416 1 1 A TYR 0.240 1
ATOM 255 O OH . TYR 200 200 ? A 18.367 35.297 -23.765 1 1 A TYR 0.240 1
ATOM 256 N N . ALA 201 201 ? A 13.979 32.170 -25.867 1 1 A ALA 0.270 1
ATOM 257 C CA . ALA 201 201 ? A 14.687 32.135 -27.125 1 1 A ALA 0.270 1
ATOM 258 C C . ALA 201 201 ? A 16.235 32.065 -26.979 1 1 A ALA 0.270 1
ATOM 259 O O . ALA 201 201 ? A 16.759 32.184 -25.841 1 1 A ALA 0.270 1
ATOM 260 C CB . ALA 201 201 ? A 14.362 33.429 -27.908 1 1 A ALA 0.270 1
ATOM 261 O OXT . ALA 201 201 ? A 16.907 31.925 -28.040 1 1 A ALA 0.270 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.508
2 1 3 0.033
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 170 ARG 1 0.690
2 1 A 171 MET 1 0.470
3 1 A 172 ARG 1 0.330
4 1 A 173 LYS 1 0.390
5 1 A 174 LYS 1 0.620
6 1 A 175 ASP 1 0.600
7 1 A 176 GLU 1 0.600
8 1 A 177 GLY 1 0.580
9 1 A 178 SER 1 0.520
10 1 A 179 TYR 1 0.380
11 1 A 180 ASP 1 0.540
12 1 A 181 LEU 1 0.540
13 1 A 182 GLY 1 0.600
14 1 A 183 GLU 1 0.600
15 1 A 184 ARG 1 0.320
16 1 A 185 LYS 1 0.520
17 1 A 186 PRO 1 0.720
18 1 A 187 SER 1 0.720
19 1 A 188 SER 1 0.710
20 1 A 189 ALA 1 0.720
21 1 A 190 ALA 1 0.540
22 1 A 191 TYR 1 0.400
23 1 A 192 GLN 1 0.460
24 1 A 193 LYS 1 0.520
25 1 A 194 ALA 1 0.490
26 1 A 195 PRO 1 0.490
27 1 A 196 THR 1 0.450
28 1 A 197 LYS 1 0.430
29 1 A 198 GLU 1 0.400
30 1 A 199 PHE 1 0.390
31 1 A 200 TYR 1 0.240
32 1 A 201 ALA 1 0.270
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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