data_SMR-8f3500aa71455c546b4964e89e7f3e18_2
_entry.id SMR-8f3500aa71455c546b4964e89e7f3e18_2
_struct.entry_id SMR-8f3500aa71455c546b4964e89e7f3e18_2
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - A6IAV5/ A6IAV5_RAT, Transforming growth factor alpha, isoform CRA_a
  - P01134/ TGFA_RAT, Protransforming growth factor alpha

Estimated model accuracy of this model is 0.055, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries A6IAV5, P01134'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 19828.639 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP TGFA_RAT P01134 1
;MVPAAGQLALLALGILVAVCQALENSTSPLSDSPVAAAVVSHFNKCPDSHTQYCFHGTCRFLVQEEKPAC
VCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQVRKHCEWCRALVCRHE
KPSALLKGRTACCHSETVV
;
'Protransforming growth factor alpha'
2 1 UNP A6IAV5_RAT A6IAV5 1
;MVPAAGQLALLALGILVAVCQALENSTSPLSDSPVAAAVVSHFNKCPDSHTQYCFHGTCRFLVQEEKPAC
VCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQVRKHCEWCRALVCRHE
KPSALLKGRTACCHSETVV
;
'Transforming growth factor alpha, isoform CRA_a'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 159 1 159
2 2 1 159 1 159
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . TGFA_RAT P01134 . 1 159 10116 'Rattus norvegicus (Rat)' 1998-07-15
E9664EF04DFCF4D5
1 UNP . A6IAV5_RAT A6IAV5 . 1 159 10116 'Rattus norvegicus (Rat)' 2023-06-28
E9664EF04DFCF4D5
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A
;MVPAAGQLALLALGILVAVCQALENSTSPLSDSPVAAAVVSHFNKCPDSHTQYCFHGTCRFLVQEEKPAC
VCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQVRKHCEWCRALVCRHE
KPSALLKGRTACCHSETVV
;

;MVPAAGQLALLALGILVAVCQALENSTSPLSDSPVAAAVVSHFNKCPDSHTQYCFHGTCRFLVQEEKPAC
VCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQVRKHCEWCRALVCRHE
KPSALLKGRTACCHSETVV
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 VAL .
1 3 PRO .
1 4 ALA .
1 5 ALA .
1 6 GLY .
1 7 GLN .
1 8 LEU .
1 9 ALA .
1 10 LEU .
1 11 LEU .
1 12 ALA .
1 13 LEU .
1 14 GLY .
1 15 ILE .
1 16 LEU .
1 17 VAL .
1 18 ALA .
1 19 VAL .
1 20 CYS .
1 21 GLN .
1 22 ALA .
1 23 LEU .
1 24 GLU .
1 25 ASN .
1 26 SER .
1 27 THR .
1 28 SER .
1 29 PRO .
1 30 LEU .
1 31 SER .
1 32 ASP .
1 33 SER .
1 34 PRO .
1 35 VAL .
1 36 ALA .
1 37 ALA .
1 38 ALA .
1 39 VAL .
1 40 VAL .
1 41 SER .
1 42 HIS .
1 43 PHE .
1 44 ASN .
1 45 LYS .
1 46 CYS .
1 47 PRO .
1 48 ASP .
1 49 SER .
1 50 HIS .
1 51 THR .
1 52 GLN .
1 53 TYR .
1 54 CYS .
1 55 PHE .
1 56 HIS .
1 57 GLY .
1 58 THR .
1 59 CYS .
1 60 ARG .
1 61 PHE .
1 62 LEU .
1 63 VAL .
1 64 GLN .
1 65 GLU .
1 66 GLU .
1 67 LYS .
1 68 PRO .
1 69 ALA .
1 70 CYS .
1 71 VAL .
1 72 CYS .
1 73 HIS .
1 74 SER .
1 75 GLY .
1 76 TYR .
1 77 VAL .
1 78 GLY .
1 79 VAL .
1 80 ARG .
1 81 CYS .
1 82 GLU .
1 83 HIS .
1 84 ALA .
1 85 ASP .
1 86 LEU .
1 87 LEU .
1 88 ALA .
1 89 VAL .
1 90 VAL .
1 91 ALA .
1 92 ALA .
1 93 SER .
1 94 GLN .
1 95 LYS .
1 96 LYS .
1 97 GLN .
1 98 ALA .
1 99 ILE .
1 100 THR .
1 101 ALA .
1 102 LEU .
1 103 VAL .
1 104 VAL .
1 105 VAL .
1 106 SER .
1 107 ILE .
1 108 VAL .
1 109 ALA .
1 110 LEU .
1 111 ALA .
1 112 VAL .
1 113 LEU .
1 114 ILE .
1 115 ILE .
1 116 THR .
1 117 CYS .
1 118 VAL .
1 119 LEU .
1 120 ILE .
1 121 HIS .
1 122 CYS .
1 123 CYS .
1 124 GLN .
1 125 VAL .
1 126 ARG .
1 127 LYS .
1 128 HIS .
1 129 CYS .
1 130 GLU .
1 131 TRP .
1 132 CYS .
1 133 ARG .
1 134 ALA .
1 135 LEU .
1 136 VAL .
1 137 CYS .
1 138 ARG .
1 139 HIS .
1 140 GLU .
1 141 LYS .
1 142 PRO .
1 143 SER .
1 144 ALA .
1 145 LEU .
1 146 LEU .
1 147 LYS .
1 148 GLY .
1 149 ARG .
1 150 THR .
1 151 ALA .
1 152 CYS .
1 153 CYS .
1 154 HIS .
1 155 SER .
1 156 GLU .
1 157 THR .
1 158 VAL .
1 159 VAL .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 VAL 2 ? ? ? A .
A 1 3 PRO 3 ? ? ? A .
A 1 4 ALA 4 ? ? ? A .
A 1 5 ALA 5 ? ? ? A .
A 1 6 GLY 6 ? ? ? A .
A 1 7 GLN 7 ? ? ? A .
A 1 8 LEU 8 ? ? ? A .
A 1 9 ALA 9 ? ? ? A .
A 1 10 LEU 10 ? ? ? A .
A 1 11 LEU 11 ? ? ? A .
A 1 12 ALA 12 ? ? ? A .
A 1 13 LEU 13 ? ? ? A .
A 1 14 GLY 14 ? ? ? A .
A 1 15 ILE 15 ? ? ? A .
A 1 16 LEU 16 ? ? ? A .
A 1 17 VAL 17 ? ? ? A .
A 1 18 ALA 18 ? ? ? A .
A 1 19 VAL 19 ? ? ? A .
A 1 20 CYS 20 ? ? ? A .
A 1 21 GLN 21 ? ? ? A .
A 1 22 ALA 22 ? ? ? A .
A 1 23 LEU 23 ? ? ? A .
A 1 24 GLU 24 ? ? ? A .
A 1 25 ASN 25 ? ? ? A .
A 1 26 SER 26 ? ? ? A .
A 1 27 THR 27 ? ? ? A .
A 1 28 SER 28 ? ? ? A .
A 1 29 PRO 29 ? ? ? A .
A 1 30 LEU 30 ? ? ? A .
A 1 31 SER 31 ? ? ? A .
A 1 32 ASP 32 ? ? ? A .
A 1 33 SER 33 ? ? ? A .
A 1 34 PRO 34 ? ? ? A .
A 1 35 VAL 35 ? ? ? A .
A 1 36 ALA 36 ? ? ? A .
A 1 37 ALA 37 ? ? ? A .
A 1 38 ALA 38 ? ? ? A .
A 1 39 VAL 39 ? ? ? A .
A 1 40 VAL 40 ? ? ? A .
A 1 41 SER 41 ? ? ? A .
A 1 42 HIS 42 ? ? ? A .
A 1 43 PHE 43 ? ? ? A .
A 1 44 ASN 44 ? ? ? A .
A 1 45 LYS 45 ? ? ? A .
A 1 46 CYS 46 ? ? ? A .
A 1 47 PRO 47 ? ? ? A .
A 1 48 ASP 48 ? ? ? A .
A 1 49 SER 49 ? ? ? A .
A 1 50 HIS 50 ? ? ? A .
A 1 51 THR 51 ? ? ? A .
A 1 52 GLN 52 ? ? ? A .
A 1 53 TYR 53 ? ? ? A .
A 1 54 CYS 54 ? ? ? A .
A 1 55 PHE 55 ? ? ? A .
A 1 56 HIS 56 ? ? ? A .
A 1 57 GLY 57 ? ? ? A .
A 1 58 THR 58 ? ? ? A .
A 1 59 CYS 59 ? ? ? A .
A 1 60 ARG 60 ? ? ? A .
A 1 61 PHE 61 ? ? ? A .
A 1 62 LEU 62 ? ? ? A .
A 1 63 VAL 63 ? ? ? A .
A 1 64 GLN 64 ? ? ? A .
A 1 65 GLU 65 ? ? ? A .
A 1 66 GLU 66 ? ? ? A .
A 1 67 LYS 67 ? ? ? A .
A 1 68 PRO 68 ? ? ? A .
A 1 69 ALA 69 ? ? ? A .
A 1 70 CYS 70 ? ? ? A .
A 1 71 VAL 71 ? ? ? A .
A 1 72 CYS 72 ? ? ? A .
A 1 73 HIS 73 ? ? ? A .
A 1 74 SER 74 ? ? ? A .
A 1 75 GLY 75 ? ? ? A .
A 1 76 TYR 76 ? ? ? A .
A 1 77 VAL 77 ? ? ? A .
A 1 78 GLY 78 ? ? ? A .
A 1 79 VAL 79 ? ? ? A .
A 1 80 ARG 80 ? ? ? A .
A 1 81 CYS 81 ? ? ? A .
A 1 82 GLU 82 ? ? ? A .
A 1 83 HIS 83 ? ? ? A .
A 1 84 ALA 84 ? ? ? A .
A 1 85 ASP 85 ? ? ? A .
A 1 86 LEU 86 ? ? ? A .
A 1 87 LEU 87 ? ? ? A .
A 1 88 ALA 88 ? ? ? A .
A 1 89 VAL 89 ? ? ? A .
A 1 90 VAL 90 ? ? ? A .
A 1 91 ALA 91 ? ? ? A .
A 1 92 ALA 92 ? ? ? A .
A 1 93 SER 93 ? ? ? A .
A 1 94 GLN 94 ? ? ? A .
A 1 95 LYS 95 ? ? ? A .
A 1 96 LYS 96 ? ? ? A .
A 1 97 GLN 97 ? ? ? A .
A 1 98 ALA 98 ? ? ? A .
A 1 99 ILE 99 99 ILE ILE A .
A 1 100 THR 100 100 THR THR A .
A 1 101 ALA 101 101 ALA ALA A .
A 1 102 LEU 102 102 LEU LEU A .
A 1 103 VAL 103 103 VAL VAL A .
A 1 104 VAL 104 104 VAL VAL A .
A 1 105 VAL 105 105 VAL VAL A .
A 1 106 SER 106 106 SER SER A .
A 1 107 ILE 107 107 ILE ILE A .
A 1 108 VAL 108 108 VAL VAL A .
A 1 109 ALA 109 109 ALA ALA A .
A 1 110 LEU 110 110 LEU LEU A .
A 1 111 ALA 111 111 ALA ALA A .
A 1 112 VAL 112 112 VAL VAL A .
A 1 113 LEU 113 113 LEU LEU A .
A 1 114 ILE 114 114 ILE ILE A .
A 1 115 ILE 115 115 ILE ILE A .
A 1 116 THR 116 116 THR THR A .
A 1 117 CYS 117 117 CYS CYS A .
A 1 118 VAL 118 118 VAL VAL A .
A 1 119 LEU 119 119 LEU LEU A .
A 1 120 ILE 120 120 ILE ILE A .
A 1 121 HIS 121 121 HIS HIS A .
A 1 122 CYS 122 122 CYS CYS A .
A 1 123 CYS 123 123 CYS CYS A .
A 1 124 GLN 124 124 GLN GLN A .
A 1 125 VAL 125 125 VAL VAL A .
A 1 126 ARG 126 126 ARG ARG A .
A 1 127 LYS 127 127 LYS LYS A .
A 1 128 HIS 128 ? ? ? A .
A 1 129 CYS 129 ? ? ? A .
A 1 130 GLU 130 ? ? ? A .
A 1 131 TRP 131 ? ? ? A .
A 1 132 CYS 132 ? ? ? A .
A 1 133 ARG 133 ? ? ? A .
A 1 134 ALA 134 ? ? ? A .
A 1 135 LEU 135 ? ? ? A .
A 1 136 VAL 136 ? ? ? A .
A 1 137 CYS 137 ? ? ? A .
A 1 138 ARG 138 ? ? ? A .
A 1 139 HIS 139 ? ? ? A .
A 1 140 GLU 140 ? ? ? A .
A 1 141 LYS 141 ? ? ? A .
A 1 142 PRO 142 ? ? ? A .
A 1 143 SER 143 ? ? ? A .
A 1 144 ALA 144 ? ? ? A .
A 1 145 LEU 145 ? ? ? A .
A 1 146 LEU 146 ? ? ? A .
A 1 147 LYS 147 ? ? ? A .
A 1 148 GLY 148 ? ? ? A .
A 1 149 ARG 149 ? ? ? A .
A 1 150 THR 150 ? ? ? A .
A 1 151 ALA 151 ? ? ? A .
A 1 152 CYS 152 ? ? ? A .
A 1 153 CYS 153 ? ? ? A .
A 1 154 HIS 154 ? ? ? A .
A 1 155 SER 155 ? ? ? A .
A 1 156 GLU 156 ? ? ? A .
A 1 157 THR 157 ? ? ? A .
A 1 158 VAL 158 ? ? ? A .
A 1 159 VAL 159 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1 'Syndecan-2 {PDB ID=6ith, label_asym_id=A, auth_asym_id=A, SMTL ID=6ith.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 6ith, label_asym_id=A'
'target-template alignment' .
4 'model 2' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-14
6 PDB https://www.wwpdb.org . 2024-11-08
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 MEQSTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKHHHHHH
MEQSTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKHHHHHH
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 8 35
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 6ith 2024-05-15
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 159
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 159 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 5.300 14.286
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MVPAAGQLALLALGILVAVCQALENSTSPLSDSPVAAAVVSHFNKCPDSHTQYCFHGTCRFLVQEEKPACVCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQVRKHCEWCRALVCRHEKPSALLKGRTACCHSETVV
2 1 2
--------------------------------------------------------------------------------------------------LAAVIAGGVIGFLFAIFLIL-LLVYRMRK--------------------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 6ith.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 2' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ILE 99 99 ? A 4.986 6.435 2.281 1 1 A ILE 0.210 1
ATOM 2 C CA . ILE 99 99 ? A 4.887 5.636 3.556 1 1 A ILE 0.210 1
ATOM 3 C C . ILE 99 99 ? A 5.828 6.171 4.612 1 1 A ILE 0.210 1
ATOM 4 O O . ILE 99 99 ? A 5.368 6.689 5.598 1 1 A ILE 0.210 1
ATOM 5 C CB . ILE 99 99 ? A 5.038 4.139 3.313 1 1 A ILE 0.210 1
ATOM 6 C CG1 . ILE 99 99 ? A 3.886 3.661 2.401 1 1 A ILE 0.210 1
ATOM 7 C CG2 . ILE 99 99 ? A 5.042 3.335 4.643 1 1 A ILE 0.210 1
ATOM 8 C CD1 . ILE 99 99 ? A 4.115 2.267 1.818 1 1 A ILE 0.210 1
ATOM 9 N N . THR 100 100 ? A 7.175 6.118 4.379 1 1 A THR 0.240 1
ATOM 10 C CA . THR 100 100 ? A 8.189 6.597 5.330 1 1 A THR 0.240 1
ATOM 11 C C . THR 100 100 ? A 7.931 7.967 5.901 1 1 A THR 0.240 1
ATOM 12 O O . THR 100 100 ? A 7.937 8.145 7.112 1 1 A THR 0.240 1
ATOM 13 C CB . THR 100 100 ? A 9.562 6.622 4.677 1 1 A THR 0.240 1
ATOM 14 O OG1 . THR 100 100 ? A 9.811 5.347 4.103 1 1 A THR 0.240 1
ATOM 15 C CG2 . THR 100 100 ? A 10.688 6.931 5.676 1 1 A THR 0.240 1
ATOM 16 N N . ALA 101 101 ? A 7.601 8.955 5.042 1 1 A ALA 0.410 1
ATOM 17 C CA . ALA 101 101 ? A 7.224 10.276 5.496 1 1 A ALA 0.410 1
ATOM 18 C C . ALA 101 101 ? A 6.033 10.287 6.471 1 1 A ALA 0.410 1
ATOM 19 O O . ALA 101 101 ? A 6.124 10.848 7.552 1 1 A ALA 0.410 1
ATOM 20 C CB . ALA 101 101 ? A 6.936 11.165 4.267 1 1 A ALA 0.410 1
ATOM 21 N N . LEU 102 102 ? A 4.925 9.578 6.147 1 1 A LEU 0.380 1
ATOM 22 C CA . LEU 102 102 ? A 3.752 9.460 7.002 1 1 A LEU 0.380 1
ATOM 23 C C . LEU 102 102 ? A 4.037 8.824 8.358 1 1 A LEU 0.380 1
ATOM 24 O O . LEU 102 102 ? A 3.588 9.314 9.393 1 1 A LEU 0.380 1
ATOM 25 C CB . LEU 102 102 ? A 2.639 8.634 6.303 1 1 A LEU 0.380 1
ATOM 26 C CG . LEU 102 102 ? A 2.010 9.271 5.048 1 1 A LEU 0.380 1
ATOM 27 C CD1 . LEU 102 102 ? A 1.074 8.259 4.367 1 1 A LEU 0.380 1
ATOM 28 C CD2 . LEU 102 102 ? A 1.229 10.543 5.402 1 1 A LEU 0.380 1
ATOM 29 N N . VAL 103 103 ? A 4.830 7.733 8.389 1 1 A VAL 0.530 1
ATOM 30 C CA . VAL 103 103 ? A 5.252 7.082 9.624 1 1 A VAL 0.530 1
ATOM 31 C C . VAL 103 103 ? A 6.060 8.010 10.516 1 1 A VAL 0.530 1
ATOM 32 O O . VAL 103 103 ? A 5.777 8.139 11.709 1 1 A VAL 0.530 1
ATOM 33 C CB . VAL 103 103 ? A 6.080 5.834 9.329 1 1 A VAL 0.530 1
ATOM 34 C CG1 . VAL 103 103 ? A 6.669 5.215 10.613 1 1 A VAL 0.530 1
ATOM 35 C CG2 . VAL 103 103 ? A 5.195 4.787 8.633 1 1 A VAL 0.530 1
ATOM 36 N N . VAL 104 104 ? A 7.055 8.724 9.938 1 1 A VAL 0.610 1
ATOM 37 C CA . VAL 104 104 ? A 7.889 9.676 10.659 1 1 A VAL 0.610 1
ATOM 38 C C . VAL 104 104 ? A 7.049 10.794 11.253 1 1 A VAL 0.610 1
ATOM 39 O O . VAL 104 104 ? A 7.134 11.064 12.442 1 1 A VAL 0.610 1
ATOM 40 C CB . VAL 104 104 ? A 9.007 10.248 9.782 1 1 A VAL 0.610 1
ATOM 41 C CG1 . VAL 104 104 ? A 9.789 11.384 10.477 1 1 A VAL 0.610 1
ATOM 42 C CG2 . VAL 104 104 ? A 9.995 9.120 9.429 1 1 A VAL 0.610 1
ATOM 43 N N . VAL 105 105 ? A 6.144 11.401 10.440 1 1 A VAL 0.650 1
ATOM 44 C CA . VAL 105 105 ? A 5.246 12.467 10.868 1 1 A VAL 0.650 1
ATOM 45 C C . VAL 105 105 ? A 4.377 12.023 12.039 1 1 A VAL 0.650 1
ATOM 46 O O . VAL 105 105 ? A 4.329 12.693 13.059 1 1 A VAL 0.650 1
ATOM 47 C CB . VAL 105 105 ? A 4.381 12.988 9.712 1 1 A VAL 0.650 1
ATOM 48 C CG1 . VAL 105 105 ? A 3.309 13.999 10.172 1 1 A VAL 0.650 1
ATOM 49 C CG2 . VAL 105 105 ? A 5.289 13.694 8.687 1 1 A VAL 0.650 1
ATOM 50 N N . SER 106 106 ? A 3.744 10.825 11.940 1 1 A SER 0.650 1
ATOM 51 C CA . SER 106 106 ? A 2.909 10.260 13.000 1 1 A SER 0.650 1
ATOM 52 C C . SER 106 106 ? A 3.631 10.010 14.310 1 1 A SER 0.650 1
ATOM 53 O O . SER 106 106 ? A 3.136 10.385 15.372 1 1 A SER 0.650 1
ATOM 54 C CB . SER 106 106 ? A 2.248 8.919 12.582 1 1 A SER 0.650 1
ATOM 55 O OG . SER 106 106 ? A 1.288 9.120 11.543 1 1 A SER 0.650 1
ATOM 56 N N . ILE 107 107 ? A 4.837 9.400 14.277 1 1 A ILE 0.670 1
ATOM 57 C CA . ILE 107 107 ? A 5.662 9.177 15.462 1 1 A ILE 0.670 1
ATOM 58 C C . ILE 107 107 ? A 6.125 10.478 16.081 1 1 A ILE 0.670 1
ATOM 59 O O . ILE 107 107 ? A 5.988 10.680 17.289 1 1 A ILE 0.670 1
ATOM 60 C CB . ILE 107 107 ? A 6.877 8.295 15.160 1 1 A ILE 0.670 1
ATOM 61 C CG1 . ILE 107 107 ? A 6.411 6.881 14.748 1 1 A ILE 0.670 1
ATOM 62 C CG2 . ILE 107 107 ? A 7.848 8.217 16.367 1 1 A ILE 0.670 1
ATOM 63 C CD1 . ILE 107 107 ? A 7.533 6.027 14.150 1 1 A ILE 0.670 1
ATOM 64 N N . VAL 108 108 ? A 6.644 11.421 15.260 1 1 A VAL 0.690 1
ATOM 65 C CA . VAL 108 108 ? A 7.096 12.719 15.736 1 1 A VAL 0.690 1
ATOM 66 C C . VAL 108 108 ? A 5.957 13.504 16.368 1 1 A VAL 0.690 1
ATOM 67 O O . VAL 108 108 ? A 6.057 13.941 17.506 1 1 A VAL 0.690 1
ATOM 68 C CB . VAL 108 108 ? A 7.763 13.542 14.630 1 1 A VAL 0.690 1
ATOM 69 C CG1 . VAL 108 108 ? A 8.097 14.978 15.085 1 1 A VAL 0.690 1
ATOM 70 C CG2 . VAL 108 108 ? A 9.072 12.856 14.196 1 1 A VAL 0.690 1
ATOM 71 N N . ALA 109 109 ? A 4.801 13.619 15.666 1 1 A ALA 0.700 1
ATOM 72 C CA . ALA 109 109 ? A 3.642 14.342 16.146 1 1 A ALA 0.700 1
ATOM 73 C C . ALA 109 109 ? A 3.112 13.777 17.446 1 1 A ALA 0.700 1
ATOM 74 O O . ALA 109 109 ? A 2.900 14.510 18.408 1 1 A ALA 0.700 1
ATOM 75 C CB . ALA 109 109 ? A 2.523 14.333 15.079 1 1 A ALA 0.700 1
ATOM 76 N N . LEU 110 110 ? A 2.972 12.437 17.528 1 1 A LEU 0.680 1
ATOM 77 C CA . LEU 110 110 ? A 2.537 11.771 18.735 1 1 A LEU 0.680 1
ATOM 78 C C . LEU 110 110 ? A 3.469 12.006 19.917 1 1 A LEU 0.680 1
ATOM 79 O O . LEU 110 110 ? A 3.024 12.401 20.991 1 1 A LEU 0.680 1
ATOM 80 C CB . LEU 110 110 ? A 2.384 10.258 18.467 1 1 A LEU 0.680 1
ATOM 81 C CG . LEU 110 110 ? A 1.821 9.436 19.641 1 1 A LEU 0.680 1
ATOM 82 C CD1 . LEU 110 110 ? A 0.427 9.912 20.081 1 1 A LEU 0.680 1
ATOM 83 C CD2 . LEU 110 110 ? A 1.815 7.936 19.312 1 1 A LEU 0.680 1
ATOM 84 N N . ALA 111 111 ? A 4.800 11.850 19.719 1 1 A ALA 0.710 1
ATOM 85 C CA . ALA 111 111 ? A 5.791 12.115 20.740 1 1 A ALA 0.710 1
ATOM 86 C C . ALA 111 111 ? A 5.725 13.556 21.252 1 1 A ALA 0.710 1
ATOM 87 O O . ALA 111 111 ? A 5.647 13.786 22.452 1 1 A ALA 0.710 1
ATOM 88 C CB . ALA 111 111 ? A 7.198 11.783 20.192 1 1 A ALA 0.710 1
ATOM 89 N N . VAL 112 112 ? A 5.651 14.553 20.336 1 1 A VAL 0.700 1
ATOM 90 C CA . VAL 112 112 ? A 5.502 15.964 20.684 1 1 A VAL 0.700 1
ATOM 91 C C . VAL 112 112 ? A 4.245 16.248 21.511 1 1 A VAL 0.700 1
ATOM 92 O O . VAL 112 112 ? A 4.307 16.915 22.538 1 1 A VAL 0.700 1
ATOM 93 C CB . VAL 112 112 ? A 5.529 16.860 19.440 1 1 A VAL 0.700 1
ATOM 94 C CG1 . VAL 112 112 ? A 5.260 18.344 19.772 1 1 A VAL 0.700 1
ATOM 95 C CG2 . VAL 112 112 ? A 6.914 16.769 18.772 1 1 A VAL 0.700 1
ATOM 96 N N . LEU 113 113 ? A 3.072 15.701 21.114 1 1 A LEU 0.690 1
ATOM 97 C CA . LEU 113 113 ? A 1.819 15.872 21.842 1 1 A LEU 0.690 1
ATOM 98 C C . LEU 113 113 ? A 1.820 15.295 23.249 1 1 A LEU 0.690 1
ATOM 99 O O . LEU 113 113 ? A 1.365 15.932 24.205 1 1 A LEU 0.690 1
ATOM 100 C CB . LEU 113 113 ? A 0.657 15.210 21.070 1 1 A LEU 0.690 1
ATOM 101 C CG . LEU 113 113 ? A 0.279 15.892 19.742 1 1 A LEU 0.690 1
ATOM 102 C CD1 . LEU 113 113 ? A -0.704 15.002 18.965 1 1 A LEU 0.690 1
ATOM 103 C CD2 . LEU 113 113 ? A -0.287 17.306 19.944 1 1 A LEU 0.690 1
ATOM 104 N N . ILE 114 114 ? A 2.360 14.070 23.414 1 1 A ILE 0.690 1
ATOM 105 C CA . ILE 114 114 ? A 2.537 13.416 24.706 1 1 A ILE 0.690 1
ATOM 106 C C . ILE 114 114 ? A 3.490 14.181 25.593 1 1 A ILE 0.690 1
ATOM 107 O O . ILE 114 114 ? A 3.205 14.388 26.768 1 1 A ILE 0.690 1
ATOM 108 C CB . ILE 114 114 ? A 3.057 11.994 24.588 1 1 A ILE 0.690 1
ATOM 109 C CG1 . ILE 114 114 ? A 2.077 11.128 23.781 1 1 A ILE 0.690 1
ATOM 110 C CG2 . ILE 114 114 ? A 3.283 11.356 25.984 1 1 A ILE 0.690 1
ATOM 111 C CD1 . ILE 114 114 ? A 2.766 9.888 23.212 1 1 A ILE 0.690 1
ATOM 112 N N . ILE 115 115 ? A 4.630 14.661 25.012 1 1 A ILE 0.690 1
ATOM 113 C CA . ILE 115 115 ? A 5.545 15.564 25.688 1 1 A ILE 0.690 1
ATOM 114 C C . ILE 115 115 ? A 4.782 16.790 26.216 1 1 A ILE 0.690 1
ATOM 115 O O . ILE 115 115 ? A 4.606 16.934 27.404 1 1 A ILE 0.690 1
ATOM 116 C CB . ILE 115 115 ? A 6.810 15.900 24.865 1 1 A ILE 0.690 1
ATOM 117 C CG1 . ILE 115 115 ? A 7.714 14.652 24.676 1 1 A ILE 0.690 1
ATOM 118 C CG2 . ILE 115 115 ? A 7.645 17.033 25.507 1 1 A ILE 0.690 1
ATOM 119 C CD1 . ILE 115 115 ? A 8.760 14.742 23.552 1 1 A ILE 0.690 1
ATOM 120 N N . THR 116 116 ? A 4.147 17.594 25.323 1 1 A THR 0.680 1
ATOM 121 C CA . THR 116 116 ? A 3.455 18.836 25.689 1 1 A THR 0.680 1
ATOM 122 C C . THR 116 116 ? A 2.396 18.711 26.756 1 1 A THR 0.680 1
ATOM 123 O O . THR 116 116 ? A 2.350 19.498 27.692 1 1 A THR 0.680 1
ATOM 124 C CB . THR 116 116 ? A 2.790 19.476 24.472 1 1 A THR 0.680 1
ATOM 125 O OG1 . THR 116 116 ? A 3.792 19.829 23.529 1 1 A THR 0.680 1
ATOM 126 C CG2 . THR 116 116 ? A 2.041 20.777 24.815 1 1 A THR 0.680 1
ATOM 127 N N . CYS 117 117 ? A 1.518 17.697 26.657 1 1 A CYS 0.650 1
ATOM 128 C CA . CYS 117 117 ? A 0.392 17.619 27.558 1 1 A CYS 0.650 1
ATOM 129 C C . CYS 117 117 ? A 0.666 16.844 28.850 1 1 A CYS 0.650 1
ATOM 130 O O . CYS 117 117 ? A 0.364 17.320 29.943 1 1 A CYS 0.650 1
ATOM 131 C CB . CYS 117 117 ? A -0.845 17.106 26.786 1 1 A CYS 0.650 1
ATOM 132 S SG . CYS 117 117 ? A -1.278 18.266 25.442 1 1 A CYS 0.650 1
ATOM 133 N N . VAL 118 118 ? A 1.268 15.635 28.766 1 1 A VAL 0.520 1
ATOM 134 C CA . VAL 118 118 ? A 1.382 14.730 29.908 1 1 A VAL 0.520 1
ATOM 135 C C . VAL 118 118 ? A 2.643 15.035 30.696 1 1 A VAL 0.520 1
ATOM 136 O O . VAL 118 118 ? A 2.603 15.289 31.900 1 1 A VAL 0.520 1
ATOM 137 C CB . VAL 118 118 ? A 1.384 13.259 29.466 1 1 A VAL 0.520 1
ATOM 138 C CG1 . VAL 118 118 ? A 1.555 12.305 30.670 1 1 A VAL 0.520 1
ATOM 139 C CG2 . VAL 118 118 ? A 0.062 12.957 28.732 1 1 A VAL 0.520 1
ATOM 140 N N . LEU 119 119 ? A 3.803 15.049 30.007 1 1 A LEU 0.430 1
ATOM 141 C CA . LEU 119 119 ? A 5.107 15.304 30.599 1 1 A LEU 0.430 1
ATOM 142 C C . LEU 119 119 ? A 5.328 16.733 31.068 1 1 A LEU 0.430 1
ATOM 143 O O . LEU 119 119 ? A 5.995 16.973 32.060 1 1 A LEU 0.430 1
ATOM 144 C CB . LEU 119 119 ? A 6.267 14.977 29.628 1 1 A LEU 0.430 1
ATOM 145 C CG . LEU 119 119 ? A 6.453 13.489 29.287 1 1 A LEU 0.430 1
ATOM 146 C CD1 . LEU 119 119 ? A 7.520 13.319 28.201 1 1 A LEU 0.430 1
ATOM 147 C CD2 . LEU 119 119 ? A 6.894 12.670 30.504 1 1 A LEU 0.430 1
ATOM 148 N N . ILE 120 120 ? A 4.793 17.719 30.320 1 1 A ILE 0.510 1
ATOM 149 C CA . ILE 120 120 ? A 5.101 19.121 30.553 1 1 A ILE 0.510 1
ATOM 150 C C . ILE 120 120 ? A 3.956 19.803 31.259 1 1 A ILE 0.510 1
ATOM 151 O O . ILE 120 120 ? A 4.080 20.099 32.449 1 1 A ILE 0.510 1
ATOM 152 C CB . ILE 120 120 ? A 5.453 19.824 29.246 1 1 A ILE 0.510 1
ATOM 153 C CG1 . ILE 120 120 ? A 6.639 19.118 28.528 1 1 A ILE 0.510 1
ATOM 154 C CG2 . ILE 120 120 ? A 5.663 21.348 29.414 1 1 A ILE 0.510 1
ATOM 155 C CD1 . ILE 120 120 ? A 8.012 19.167 29.217 1 1 A ILE 0.510 1
ATOM 156 N N . HIS 121 121 ? A 2.812 20.086 30.599 1 1 A HIS 0.430 1
ATOM 157 C CA . HIS 121 121 ? A 1.767 20.921 31.186 1 1 A HIS 0.430 1
ATOM 158 C C . HIS 121 121 ? A 1.216 20.384 32.521 1 1 A HIS 0.430 1
ATOM 159 O O . HIS 121 121 ? A 1.221 21.061 33.533 1 1 A HIS 0.430 1
ATOM 160 C CB . HIS 121 121 ? A 0.624 21.145 30.165 1 1 A HIS 0.430 1
ATOM 161 C CG . HIS 121 121 ? A -0.479 22.029 30.650 1 1 A HIS 0.430 1
ATOM 162 N ND1 . HIS 121 121 ? A -0.227 23.372 30.808 1 1 A HIS 0.430 1
ATOM 163 C CD2 . HIS 121 121 ? A -1.746 21.734 31.046 1 1 A HIS 0.430 1
ATOM 164 C CE1 . HIS 121 121 ? A -1.339 23.876 31.298 1 1 A HIS 0.430 1
ATOM 165 N NE2 . HIS 121 121 ? A -2.291 22.928 31.462 1 1 A HIS 0.430 1
ATOM 166 N N . CYS 122 122 ? A 0.834 19.083 32.572 1 1 A CYS 0.480 1
ATOM 167 C CA . CYS 122 122 ? A 0.389 18.430 33.804 1 1 A CYS 0.480 1
ATOM 168 C C . CYS 122 122 ? A 1.447 18.388 34.918 1 1 A CYS 0.480 1
ATOM 169 O O . CYS 122 122 ? A 1.118 18.476 36.105 1 1 A CYS 0.480 1
ATOM 170 C CB . CYS 122 122 ? A -0.162 16.999 33.530 1 1 A CYS 0.480 1
ATOM 171 S SG . CYS 122 122 ? A -1.718 16.977 32.580 1 1 A CYS 0.480 1
ATOM 172 N N . CYS 123 123 ? A 2.747 18.242 34.580 1 1 A CYS 0.440 1
ATOM 173 C CA . CYS 123 123 ? A 3.855 18.355 35.525 1 1 A CYS 0.440 1
ATOM 174 C C . CYS 123 123 ? A 4.078 19.778 36.031 1 1 A CYS 0.440 1
ATOM 175 O O . CYS 123 123 ? A 4.285 20.004 37.218 1 1 A CYS 0.440 1
ATOM 176 C CB . CYS 123 123 ? A 5.173 17.812 34.909 1 1 A CYS 0.440 1
ATOM 177 S SG . CYS 123 123 ? A 6.559 17.568 36.070 1 1 A CYS 0.440 1
ATOM 178 N N . GLN 124 124 ? A 4.017 20.797 35.152 1 1 A GLN 0.350 1
ATOM 179 C CA . GLN 124 124 ? A 4.146 22.192 35.542 1 1 A GLN 0.350 1
ATOM 180 C C . GLN 124 124 ? A 3.041 22.686 36.458 1 1 A GLN 0.350 1
ATOM 181 O O . GLN 124 124 ? A 3.307 23.429 37.395 1 1 A GLN 0.350 1
ATOM 182 C CB . GLN 124 124 ? A 4.228 23.124 34.321 1 1 A GLN 0.350 1
ATOM 183 C CG . GLN 124 124 ? A 5.531 22.943 33.519 1 1 A GLN 0.350 1
ATOM 184 C CD . GLN 124 124 ? A 5.503 23.831 32.279 1 1 A GLN 0.350 1
ATOM 185 O OE1 . GLN 124 124 ? A 4.455 24.195 31.756 1 1 A GLN 0.350 1
ATOM 186 N NE2 . GLN 124 124 ? A 6.704 24.205 31.776 1 1 A GLN 0.350 1
ATOM 187 N N . VAL 125 125 ? A 1.787 22.256 36.216 1 1 A VAL 0.310 1
ATOM 188 C CA . VAL 125 125 ? A 0.616 22.532 37.052 1 1 A VAL 0.310 1
ATOM 189 C C . VAL 125 125 ? A 0.699 21.853 38.424 1 1 A VAL 0.310 1
ATOM 190 O O . VAL 125 125 ? A 0.027 22.246 39.370 1 1 A VAL 0.310 1
ATOM 191 C CB . VAL 125 125 ? A -0.679 22.125 36.328 1 1 A VAL 0.310 1
ATOM 192 C CG1 . VAL 125 125 ? A -1.947 22.308 37.189 1 1 A VAL 0.310 1
ATOM 193 C CG2 . VAL 125 125 ? A -0.859 22.990 35.067 1 1 A VAL 0.310 1
ATOM 194 N N . ARG 126 126 ? A 1.564 20.827 38.594 1 1 A ARG 0.190 1
ATOM 195 C CA . ARG 126 126 ? A 1.744 20.102 39.845 1 1 A ARG 0.190 1
ATOM 196 C C . ARG 126 126 ? A 2.268 20.924 41.040 1 1 A ARG 0.190 1
ATOM 197 O O . ARG 126 126 ? A 2.196 20.502 42.183 1 1 A ARG 0.190 1
ATOM 198 C CB . ARG 126 126 ? A 2.756 18.948 39.629 1 1 A ARG 0.190 1
ATOM 199 C CG . ARG 126 126 ? A 2.660 17.819 40.669 1 1 A ARG 0.190 1
ATOM 200 C CD . ARG 126 126 ? A 2.096 16.542 40.057 1 1 A ARG 0.190 1
ATOM 201 N NE . ARG 126 126 ? A 1.065 15.991 40.997 1 1 A ARG 0.190 1
ATOM 202 C CZ . ARG 126 126 ? A 0.225 15.007 40.650 1 1 A ARG 0.190 1
ATOM 203 N NH1 . ARG 126 126 ? A 0.321 14.424 39.458 1 1 A ARG 0.190 1
ATOM 204 N NH2 . ARG 126 126 ? A -0.730 14.611 41.487 1 1 A ARG 0.190 1
ATOM 205 N N . LYS 127 127 ? A 2.869 22.086 40.716 1 1 A LYS 0.210 1
ATOM 206 C CA . LYS 127 127 ? A 3.372 23.078 41.646 1 1 A LYS 0.210 1
ATOM 207 C C . LYS 127 127 ? A 2.341 23.923 42.445 1 1 A LYS 0.210 1
ATOM 208 O O . LYS 127 127 ? A 1.113 23.818 42.198 1 1 A LYS 0.210 1
ATOM 209 C CB . LYS 127 127 ? A 4.192 24.116 40.836 1 1 A LYS 0.210 1
ATOM 210 C CG . LYS 127 127 ? A 3.334 25.109 40.011 1 1 A LYS 0.210 1
ATOM 211 C CD . LYS 127 127 ? A 4.168 25.997 39.074 1 1 A LYS 0.210 1
ATOM 212 C CE . LYS 127 127 ? A 4.994 27.043 39.818 1 1 A LYS 0.210 1
ATOM 213 N NZ . LYS 127 127 ? A 6.355 27.103 39.242 1 1 A LYS 0.210 1
ATOM 214 O OXT . LYS 127 127 ? A 2.824 24.756 43.269 1 1 A LYS 0.210 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.521
2 1 3 0.055
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 99 ILE 1 0.210
2 1 A 100 THR 1 0.240
3 1 A 101 ALA 1 0.410
4 1 A 102 LEU 1 0.380
5 1 A 103 VAL 1 0.530
6 1 A 104 VAL 1 0.610
7 1 A 105 VAL 1 0.650
8 1 A 106 SER 1 0.650
9 1 A 107 ILE 1 0.670
10 1 A 108 VAL 1 0.690
11 1 A 109 ALA 1 0.700
12 1 A 110 LEU 1 0.680
13 1 A 111 ALA 1 0.710
14 1 A 112 VAL 1 0.700
15 1 A 113 LEU 1 0.690
16 1 A 114 ILE 1 0.690
17 1 A 115 ILE 1 0.690
18 1 A 116 THR 1 0.680
19 1 A 117 CYS 1 0.650
20 1 A 118 VAL 1 0.520
21 1 A 119 LEU 1 0.430
22 1 A 120 ILE 1 0.510
23 1 A 121 HIS 1 0.430
24 1 A 122 CYS 1 0.480
25 1 A 123 CYS 1 0.440
26 1 A 124 GLN 1 0.350
27 1 A 125 VAL 1 0.310
28 1 A 126 ARG 1 0.190
29 1 A 127 LYS 1 0.210
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
1 license
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