data_SMR-dbf06e207321622b875b562e1f14f776_1
_entry.id SMR-dbf06e207321622b875b562e1f14f776_1
_struct.entry_id SMR-dbf06e207321622b875b562e1f14f776_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - O09133/ SMR2A_MOUSE, Submaxillary gland androgen-regulated protein 2, isoform alpha

Estimated model accuracy of this model is 0.036, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries O09133'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 19337.147 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP SMR2A_MOUSE O09133 1
;MKALYMVFVLWVLIGCFLSGECHRAPRGQHGPRRTLAPSTHHRHYHLYPLPDPNHVQFGVPPFLPTSSGF
CKPHSLSLYAPPFEIVIQPSSIIVTIPGLILTLSSDPSPQRNCPARTPPRVKANIIPGPITAQLLPKLKI
PLIILDDSRK
;
'Submaxillary gland androgen-regulated protein 2, isoform alpha'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 150 1 150
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . SMR2A_MOUSE O09133 . 1 150 10090 'Mus musculus (Mouse)' 1997-07-01
61585A8262BF6550
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A
;MKALYMVFVLWVLIGCFLSGECHRAPRGQHGPRRTLAPSTHHRHYHLYPLPDPNHVQFGVPPFLPTSSGF
CKPHSLSLYAPPFEIVIQPSSIIVTIPGLILTLSSDPSPQRNCPARTPPRVKANIIPGPITAQLLPKLKI
PLIILDDSRK
;

;MKALYMVFVLWVLIGCFLSGECHRAPRGQHGPRRTLAPSTHHRHYHLYPLPDPNHVQFGVPPFLPTSSGF
CKPHSLSLYAPPFEIVIQPSSIIVTIPGLILTLSSDPSPQRNCPARTPPRVKANIIPGPITAQLLPKLKI
PLIILDDSRK
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 LYS .
1 3 ALA .
1 4 LEU .
1 5 TYR .
1 6 MET .
1 7 VAL .
1 8 PHE .
1 9 VAL .
1 10 LEU .
1 11 TRP .
1 12 VAL .
1 13 LEU .
1 14 ILE .
1 15 GLY .
1 16 CYS .
1 17 PHE .
1 18 LEU .
1 19 SER .
1 20 GLY .
1 21 GLU .
1 22 CYS .
1 23 HIS .
1 24 ARG .
1 25 ALA .
1 26 PRO .
1 27 ARG .
1 28 GLY .
1 29 GLN .
1 30 HIS .
1 31 GLY .
1 32 PRO .
1 33 ARG .
1 34 ARG .
1 35 THR .
1 36 LEU .
1 37 ALA .
1 38 PRO .
1 39 SER .
1 40 THR .
1 41 HIS .
1 42 HIS .
1 43 ARG .
1 44 HIS .
1 45 TYR .
1 46 HIS .
1 47 LEU .
1 48 TYR .
1 49 PRO .
1 50 LEU .
1 51 PRO .
1 52 ASP .
1 53 PRO .
1 54 ASN .
1 55 HIS .
1 56 VAL .
1 57 GLN .
1 58 PHE .
1 59 GLY .
1 60 VAL .
1 61 PRO .
1 62 PRO .
1 63 PHE .
1 64 LEU .
1 65 PRO .
1 66 THR .
1 67 SER .
1 68 SER .
1 69 GLY .
1 70 PHE .
1 71 CYS .
1 72 LYS .
1 73 PRO .
1 74 HIS .
1 75 SER .
1 76 LEU .
1 77 SER .
1 78 LEU .
1 79 TYR .
1 80 ALA .
1 81 PRO .
1 82 PRO .
1 83 PHE .
1 84 GLU .
1 85 ILE .
1 86 VAL .
1 87 ILE .
1 88 GLN .
1 89 PRO .
1 90 SER .
1 91 SER .
1 92 ILE .
1 93 ILE .
1 94 VAL .
1 95 THR .
1 96 ILE .
1 97 PRO .
1 98 GLY .
1 99 LEU .
1 100 ILE .
1 101 LEU .
1 102 THR .
1 103 LEU .
1 104 SER .
1 105 SER .
1 106 ASP .
1 107 PRO .
1 108 SER .
1 109 PRO .
1 110 GLN .
1 111 ARG .
1 112 ASN .
1 113 CYS .
1 114 PRO .
1 115 ALA .
1 116 ARG .
1 117 THR .
1 118 PRO .
1 119 PRO .
1 120 ARG .
1 121 VAL .
1 122 LYS .
1 123 ALA .
1 124 ASN .
1 125 ILE .
1 126 ILE .
1 127 PRO .
1 128 GLY .
1 129 PRO .
1 130 ILE .
1 131 THR .
1 132 ALA .
1 133 GLN .
1 134 LEU .
1 135 LEU .
1 136 PRO .
1 137 LYS .
1 138 LEU .
1 139 LYS .
1 140 ILE .
1 141 PRO .
1 142 LEU .
1 143 ILE .
1 144 ILE .
1 145 LEU .
1 146 ASP .
1 147 ASP .
1 148 SER .
1 149 ARG .
1 150 LYS .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 LYS 2 ? ? ? A .
A 1 3 ALA 3 ? ? ? A .
A 1 4 LEU 4 ? ? ? A .
A 1 5 TYR 5 ? ? ? A .
A 1 6 MET 6 ? ? ? A .
A 1 7 VAL 7 ? ? ? A .
A 1 8 PHE 8 8 PHE PHE A .
A 1 9 VAL 9 9 VAL VAL A .
A 1 10 LEU 10 10 LEU LEU A .
A 1 11 TRP 11 11 TRP TRP A .
A 1 12 VAL 12 12 VAL VAL A .
A 1 13 LEU 13 13 LEU LEU A .
A 1 14 ILE 14 14 ILE ILE A .
A 1 15 GLY 15 15 GLY GLY A .
A 1 16 CYS 16 16 CYS CYS A .
A 1 17 PHE 17 17 PHE PHE A .
A 1 18 LEU 18 18 LEU LEU A .
A 1 19 SER 19 19 SER SER A .
A 1 20 GLY 20 20 GLY GLY A .
A 1 21 GLU 21 21 GLU GLU A .
A 1 22 CYS 22 22 CYS CYS A .
A 1 23 HIS 23 23 HIS HIS A .
A 1 24 ARG 24 ? ? ? A .
A 1 25 ALA 25 ? ? ? A .
A 1 26 PRO 26 ? ? ? A .
A 1 27 ARG 27 ? ? ? A .
A 1 28 GLY 28 ? ? ? A .
A 1 29 GLN 29 ? ? ? A .
A 1 30 HIS 30 ? ? ? A .
A 1 31 GLY 31 ? ? ? A .
A 1 32 PRO 32 ? ? ? A .
A 1 33 ARG 33 ? ? ? A .
A 1 34 ARG 34 ? ? ? A .
A 1 35 THR 35 ? ? ? A .
A 1 36 LEU 36 ? ? ? A .
A 1 37 ALA 37 ? ? ? A .
A 1 38 PRO 38 ? ? ? A .
A 1 39 SER 39 ? ? ? A .
A 1 40 THR 40 ? ? ? A .
A 1 41 HIS 41 ? ? ? A .
A 1 42 HIS 42 ? ? ? A .
A 1 43 ARG 43 ? ? ? A .
A 1 44 HIS 44 ? ? ? A .
A 1 45 TYR 45 ? ? ? A .
A 1 46 HIS 46 ? ? ? A .
A 1 47 LEU 47 ? ? ? A .
A 1 48 TYR 48 ? ? ? A .
A 1 49 PRO 49 ? ? ? A .
A 1 50 LEU 50 ? ? ? A .
A 1 51 PRO 51 ? ? ? A .
A 1 52 ASP 52 ? ? ? A .
A 1 53 PRO 53 ? ? ? A .
A 1 54 ASN 54 ? ? ? A .
A 1 55 HIS 55 ? ? ? A .
A 1 56 VAL 56 ? ? ? A .
A 1 57 GLN 57 ? ? ? A .
A 1 58 PHE 58 ? ? ? A .
A 1 59 GLY 59 ? ? ? A .
A 1 60 VAL 60 ? ? ? A .
A 1 61 PRO 61 ? ? ? A .
A 1 62 PRO 62 ? ? ? A .
A 1 63 PHE 63 ? ? ? A .
A 1 64 LEU 64 ? ? ? A .
A 1 65 PRO 65 ? ? ? A .
A 1 66 THR 66 ? ? ? A .
A 1 67 SER 67 ? ? ? A .
A 1 68 SER 68 ? ? ? A .
A 1 69 GLY 69 ? ? ? A .
A 1 70 PHE 70 ? ? ? A .
A 1 71 CYS 71 ? ? ? A .
A 1 72 LYS 72 ? ? ? A .
A 1 73 PRO 73 ? ? ? A .
A 1 74 HIS 74 ? ? ? A .
A 1 75 SER 75 ? ? ? A .
A 1 76 LEU 76 ? ? ? A .
A 1 77 SER 77 ? ? ? A .
A 1 78 LEU 78 ? ? ? A .
A 1 79 TYR 79 ? ? ? A .
A 1 80 ALA 80 ? ? ? A .
A 1 81 PRO 81 ? ? ? A .
A 1 82 PRO 82 ? ? ? A .
A 1 83 PHE 83 ? ? ? A .
A 1 84 GLU 84 ? ? ? A .
A 1 85 ILE 85 ? ? ? A .
A 1 86 VAL 86 ? ? ? A .
A 1 87 ILE 87 ? ? ? A .
A 1 88 GLN 88 ? ? ? A .
A 1 89 PRO 89 ? ? ? A .
A 1 90 SER 90 ? ? ? A .
A 1 91 SER 91 ? ? ? A .
A 1 92 ILE 92 ? ? ? A .
A 1 93 ILE 93 ? ? ? A .
A 1 94 VAL 94 ? ? ? A .
A 1 95 THR 95 ? ? ? A .
A 1 96 ILE 96 ? ? ? A .
A 1 97 PRO 97 ? ? ? A .
A 1 98 GLY 98 ? ? ? A .
A 1 99 LEU 99 ? ? ? A .
A 1 100 ILE 100 ? ? ? A .
A 1 101 LEU 101 ? ? ? A .
A 1 102 THR 102 ? ? ? A .
A 1 103 LEU 103 ? ? ? A .
A 1 104 SER 104 ? ? ? A .
A 1 105 SER 105 ? ? ? A .
A 1 106 ASP 106 ? ? ? A .
A 1 107 PRO 107 ? ? ? A .
A 1 108 SER 108 ? ? ? A .
A 1 109 PRO 109 ? ? ? A .
A 1 110 GLN 110 ? ? ? A .
A 1 111 ARG 111 ? ? ? A .
A 1 112 ASN 112 ? ? ? A .
A 1 113 CYS 113 ? ? ? A .
A 1 114 PRO 114 ? ? ? A .
A 1 115 ALA 115 ? ? ? A .
A 1 116 ARG 116 ? ? ? A .
A 1 117 THR 117 ? ? ? A .
A 1 118 PRO 118 ? ? ? A .
A 1 119 PRO 119 ? ? ? A .
A 1 120 ARG 120 ? ? ? A .
A 1 121 VAL 121 ? ? ? A .
A 1 122 LYS 122 ? ? ? A .
A 1 123 ALA 123 ? ? ? A .
A 1 124 ASN 124 ? ? ? A .
A 1 125 ILE 125 ? ? ? A .
A 1 126 ILE 126 ? ? ? A .
A 1 127 PRO 127 ? ? ? A .
A 1 128 GLY 128 ? ? ? A .
A 1 129 PRO 129 ? ? ? A .
A 1 130 ILE 130 ? ? ? A .
A 1 131 THR 131 ? ? ? A .
A 1 132 ALA 132 ? ? ? A .
A 1 133 GLN 133 ? ? ? A .
A 1 134 LEU 134 ? ? ? A .
A 1 135 LEU 135 ? ? ? A .
A 1 136 PRO 136 ? ? ? A .
A 1 137 LYS 137 ? ? ? A .
A 1 138 LEU 138 ? ? ? A .
A 1 139 LYS 139 ? ? ? A .
A 1 140 ILE 140 ? ? ? A .
A 1 141 PRO 141 ? ? ? A .
A 1 142 LEU 142 ? ? ? A .
A 1 143 ILE 143 ? ? ? A .
A 1 144 ILE 144 ? ? ? A .
A 1 145 LEU 145 ? ? ? A .
A 1 146 ASP 146 ? ? ? A .
A 1 147 ASP 147 ? ? ? A .
A 1 148 SER 148 ? ? ? A .
A 1 149 ARG 149 ? ? ? A .
A 1 150 LYS 150 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1 'Claudin-4 {PDB ID=8u5b, label_asym_id=A, auth_asym_id=A, SMTL ID=8u5b.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 8u5b, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-14
6 PDB https://www.wwpdb.org . 2024-11-08
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1
;MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKVYDSL
LALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIVAGVVFLLAGLMVIVPVSWTA
HNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGLLCCNCPPRTDKPYSAKYSAARSAAASNYVG
LVPR
;

;MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKVYDSL
LALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIVAGVVFLLAGLMVIVPVSWTA
HNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGLLCCNCPPRTDKPYSAKYSAARSAAASNYVG
LVPR
;

#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 171 208
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 8u5b 2024-10-30
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 150
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 150 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 16.000 21.053
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MKALYMVFVLWVLIGCFLSGECHRAPRGQHGPRRTLAPSTHHRHYHLYPLPDPNHVQFGVPPFLPTSSGFCKPHSLSLYAPPFEIVIQPSSIIVTIPGLILTLSSDPSPQRNCPARTPPRVKANIIPGPITAQLLPKLKIPLIILDDSRK
2 1 2
-------SGLLLLGGGLLCCNCPPRTDKPYSAKYSAARSAAASNY---------------------------------------------------------------------------------------------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 8u5b.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . PHE 8 8 ? A 124.179 123.382 157.394 1 1 A PHE 1.000 1
ATOM 2 C CA . PHE 8 8 ? A 124.094 123.571 158.887 1 1 A PHE 1.000 1
ATOM 3 C C . PHE 8 8 ? A 122.915 122.815 159.508 1 1 A PHE 1.000 1
ATOM 4 O O . PHE 8 8 ? A 123.147 121.957 160.335 1 1 A PHE 1.000 1
ATOM 5 C CB . PHE 8 8 ? A 124.135 125.086 159.247 1 1 A PHE 1.000 1
ATOM 6 C CG . PHE 8 8 ? A 124.213 125.313 160.742 1 1 A PHE 1.000 1
ATOM 7 C CD1 . PHE 8 8 ? A 123.073 125.704 161.465 1 1 A PHE 1.000 1
ATOM 8 C CD2 . PHE 8 8 ? A 125.420 125.143 161.441 1 1 A PHE 1.000 1
ATOM 9 C CE1 . PHE 8 8 ? A 123.142 125.941 162.844 1 1 A PHE 1.000 1
ATOM 10 C CE2 . PHE 8 8 ? A 125.491 125.377 162.821 1 1 A PHE 1.000 1
ATOM 11 C CZ . PHE 8 8 ? A 124.355 125.787 163.521 1 1 A PHE 1.000 1
ATOM 12 N N . VAL 9 9 ? A 121.644 123.056 159.063 1 1 A VAL 0.990 1
ATOM 13 C CA . VAL 9 9 ? A 120.425 122.454 159.619 1 1 A VAL 0.990 1
ATOM 14 C C . VAL 9 9 ? A 120.472 120.942 159.797 1 1 A VAL 0.990 1
ATOM 15 O O . VAL 9 9 ? A 120.317 120.432 160.901 1 1 A VAL 0.990 1
ATOM 16 C CB . VAL 9 9 ? A 119.225 122.820 158.734 1 1 A VAL 0.990 1
ATOM 17 C CG1 . VAL 9 9 ? A 117.918 122.136 159.206 1 1 A VAL 0.990 1
ATOM 18 C CG2 . VAL 9 9 ? A 119.041 124.355 158.731 1 1 A VAL 0.990 1
ATOM 19 N N . LEU 10 10 ? A 120.760 120.171 158.726 1 1 A LEU 0.760 1
ATOM 20 C CA . LEU 10 10 ? A 120.803 118.728 158.852 1 1 A LEU 0.760 1
ATOM 21 C C . LEU 10 10 ? A 122.068 118.185 159.527 1 1 A LEU 0.760 1
ATOM 22 O O . LEU 10 10 ? A 122.025 117.135 160.144 1 1 A LEU 0.760 1
ATOM 23 C CB . LEU 10 10 ? A 120.411 118.031 157.521 1 1 A LEU 0.760 1
ATOM 24 C CG . LEU 10 10 ? A 121.464 117.904 156.396 1 1 A LEU 0.760 1
ATOM 25 C CD1 . LEU 10 10 ? A 120.792 117.158 155.227 1 1 A LEU 0.760 1
ATOM 26 C CD2 . LEU 10 10 ? A 122.111 119.214 155.887 1 1 A LEU 0.760 1
ATOM 27 N N . TRP 11 11 ? A 123.201 118.938 159.531 1 1 A TRP 0.590 1
ATOM 28 C CA . TRP 11 11 ? A 124.376 118.628 160.345 1 1 A TRP 0.590 1
ATOM 29 C C . TRP 11 11 ? A 124.057 118.692 161.841 1 1 A TRP 0.590 1
ATOM 30 O O . TRP 11 11 ? A 124.357 117.765 162.588 1 1 A TRP 0.590 1
ATOM 31 C CB . TRP 11 11 ? A 125.551 119.607 160.024 1 1 A TRP 0.590 1
ATOM 32 C CG . TRP 11 11 ? A 126.849 119.326 160.782 1 1 A TRP 0.590 1
ATOM 33 C CD1 . TRP 11 11 ? A 127.811 118.398 160.503 1 1 A TRP 0.590 1
ATOM 34 C CD2 . TRP 11 11 ? A 127.225 119.926 162.038 1 1 A TRP 0.590 1
ATOM 35 N NE1 . TRP 11 11 ? A 128.772 118.385 161.491 1 1 A TRP 0.590 1
ATOM 36 C CE2 . TRP 11 11 ? A 128.424 119.308 162.452 1 1 A TRP 0.590 1
ATOM 37 C CE3 . TRP 11 11 ? A 126.615 120.896 162.824 1 1 A TRP 0.590 1
ATOM 38 C CZ2 . TRP 11 11 ? A 129.034 119.667 163.650 1 1 A TRP 0.590 1
ATOM 39 C CZ3 . TRP 11 11 ? A 127.218 121.242 164.041 1 1 A TRP 0.590 1
ATOM 40 C CH2 . TRP 11 11 ? A 128.417 120.643 164.446 1 1 A TRP 0.590 1
ATOM 41 N N . VAL 12 12 ? A 123.369 119.778 162.287 1 1 A VAL 0.770 1
ATOM 42 C CA . VAL 12 12 ? A 122.898 119.946 163.659 1 1 A VAL 0.770 1
ATOM 43 C C . VAL 12 12 ? A 121.910 118.852 164.007 1 1 A VAL 0.770 1
ATOM 44 O O . VAL 12 12 ? A 122.038 118.200 165.034 1 1 A VAL 0.770 1
ATOM 45 C CB . VAL 12 12 ? A 122.283 121.331 163.913 1 1 A VAL 0.770 1
ATOM 46 C CG1 . VAL 12 12 ? A 121.667 121.443 165.327 1 1 A VAL 0.770 1
ATOM 47 C CG2 . VAL 12 12 ? A 123.383 122.401 163.794 1 1 A VAL 0.770 1
ATOM 48 N N . LEU 13 13 ? A 120.944 118.563 163.102 1 1 A LEU 0.730 1
ATOM 49 C CA . LEU 13 13 ? A 119.943 117.533 163.306 1 1 A LEU 0.730 1
ATOM 50 C C . LEU 13 13 ? A 120.543 116.144 163.531 1 1 A LEU 0.730 1
ATOM 51 O O . LEU 13 13 ? A 120.202 115.459 164.494 1 1 A LEU 0.730 1
ATOM 52 C CB . LEU 13 13 ? A 118.951 117.518 162.110 1 1 A LEU 0.730 1
ATOM 53 C CG . LEU 13 13 ? A 117.571 116.849 162.358 1 1 A LEU 0.730 1
ATOM 54 C CD1 . LEU 13 13 ? A 117.593 115.307 162.443 1 1 A LEU 0.730 1
ATOM 55 C CD2 . LEU 13 13 ? A 116.840 117.473 163.562 1 1 A LEU 0.730 1
ATOM 56 N N . ILE 14 14 ? A 121.517 115.740 162.681 1 1 A ILE 0.730 1
ATOM 57 C CA . ILE 14 14 ? A 122.276 114.497 162.807 1 1 A ILE 0.730 1
ATOM 58 C C . ILE 14 14 ? A 123.071 114.450 164.102 1 1 A ILE 0.730 1
ATOM 59 O O . ILE 14 14 ? A 123.014 113.468 164.840 1 1 A ILE 0.730 1
ATOM 60 C CB . ILE 14 14 ? A 123.203 114.275 161.603 1 1 A ILE 0.730 1
ATOM 61 C CG1 . ILE 14 14 ? A 122.358 114.059 160.322 1 1 A ILE 0.730 1
ATOM 62 C CG2 . ILE 14 14 ? A 124.163 113.074 161.824 1 1 A ILE 0.730 1
ATOM 63 C CD1 . ILE 14 14 ? A 123.179 114.172 159.029 1 1 A ILE 0.730 1
ATOM 64 N N . GLY 15 15 ? A 123.788 115.545 164.450 1 1 A GLY 0.770 1
ATOM 65 C CA . GLY 15 15 ? A 124.586 115.608 165.670 1 1 A GLY 0.770 1
ATOM 66 C C . GLY 15 15 ? A 123.770 115.551 166.944 1 1 A GLY 0.770 1
ATOM 67 O O . GLY 15 15 ? A 124.180 114.923 167.913 1 1 A GLY 0.770 1
ATOM 68 N N . CYS 16 16 ? A 122.575 116.184 166.938 1 1 A CYS 0.790 1
ATOM 69 C CA . CYS 16 16 ? A 121.549 116.110 167.975 1 1 A CYS 0.790 1
ATOM 70 C C . CYS 16 16 ? A 120.913 114.733 168.142 1 1 A CYS 0.790 1
ATOM 71 O O . CYS 16 16 ? A 120.687 114.295 169.264 1 1 A CYS 0.790 1
ATOM 72 C CB . CYS 16 16 ? A 120.414 117.158 167.767 1 1 A CYS 0.790 1
ATOM 73 S SG . CYS 16 16 ? A 120.921 118.878 168.081 1 1 A CYS 0.790 1
ATOM 74 N N . PHE 17 17 ? A 120.606 114.010 167.036 1 1 A PHE 0.600 1
ATOM 75 C CA . PHE 17 17 ? A 120.143 112.627 167.075 1 1 A PHE 0.600 1
ATOM 76 C C . PHE 17 17 ? A 121.194 111.668 167.641 1 1 A PHE 0.600 1
ATOM 77 O O . PHE 17 17 ? A 120.891 110.832 168.477 1 1 A PHE 0.600 1
ATOM 78 C CB . PHE 17 17 ? A 119.728 112.173 165.640 1 1 A PHE 0.600 1
ATOM 79 C CG . PHE 17 17 ? A 119.248 110.738 165.592 1 1 A PHE 0.600 1
ATOM 80 C CD1 . PHE 17 17 ? A 120.124 109.716 165.192 1 1 A PHE 0.600 1
ATOM 81 C CD2 . PHE 17 17 ? A 117.971 110.382 166.049 1 1 A PHE 0.600 1
ATOM 82 C CE1 . PHE 17 17 ? A 119.741 108.371 165.259 1 1 A PHE 0.600 1
ATOM 83 C CE2 . PHE 17 17 ? A 117.569 109.039 166.084 1 1 A PHE 0.600 1
ATOM 84 C CZ . PHE 17 17 ? A 118.455 108.032 165.688 1 1 A PHE 0.600 1
ATOM 85 N N . LEU 18 18 ? A 122.463 111.784 167.189 1 1 A LEU 0.620 1
ATOM 86 C CA . LEU 18 18 ? A 123.566 110.979 167.689 1 1 A LEU 0.620 1
ATOM 87 C C . LEU 18 18 ? A 123.938 111.238 169.145 1 1 A LEU 0.620 1
ATOM 88 O O . LEU 18 18 ? A 124.330 110.332 169.868 1 1 A LEU 0.620 1
ATOM 89 C CB . LEU 18 18 ? A 124.840 111.135 166.817 1 1 A LEU 0.620 1
ATOM 90 C CG . LEU 18 18 ? A 124.812 110.475 165.415 1 1 A LEU 0.620 1
ATOM 91 C CD1 . LEU 18 18 ? A 126.259 110.282 164.923 1 1 A LEU 0.620 1
ATOM 92 C CD2 . LEU 18 18 ? A 124.091 109.114 165.375 1 1 A LEU 0.620 1
ATOM 93 N N . SER 19 19 ? A 123.881 112.500 169.618 1 1 A SER 0.590 1
ATOM 94 C CA . SER 19 19 ? A 124.117 112.788 171.025 1 1 A SER 0.590 1
ATOM 95 C C . SER 19 19 ? A 122.971 112.374 171.939 1 1 A SER 0.590 1
ATOM 96 O O . SER 19 19 ? A 123.167 111.696 172.944 1 1 A SER 0.590 1
ATOM 97 C CB . SER 19 19 ? A 124.425 114.298 171.245 1 1 A SER 0.590 1
ATOM 98 O OG . SER 19 19 ? A 123.335 115.150 170.878 1 1 A SER 0.590 1
ATOM 99 N N . GLY 20 20 ? A 121.734 112.771 171.578 1 1 A GLY 0.640 1
ATOM 100 C CA . GLY 20 20 ? A 120.516 112.506 172.321 1 1 A GLY 0.640 1
ATOM 101 C C . GLY 20 20 ? A 119.624 111.535 171.615 1 1 A GLY 0.640 1
ATOM 102 O O . GLY 20 20 ? A 118.494 111.861 171.257 1 1 A GLY 0.640 1
ATOM 103 N N . GLU 21 21 ? A 120.098 110.280 171.467 1 1 A GLU 0.530 1
ATOM 104 C CA . GLU 21 21 ? A 119.339 109.133 170.987 1 1 A GLU 0.530 1
ATOM 105 C C . GLU 21 21 ? A 118.125 108.875 171.879 1 1 A GLU 0.530 1
ATOM 106 O O . GLU 21 21 ? A 117.033 108.520 171.439 1 1 A GLU 0.530 1
ATOM 107 C CB . GLU 21 21 ? A 120.240 107.867 170.955 1 1 A GLU 0.530 1
ATOM 108 C CG . GLU 21 21 ? A 121.293 107.838 169.813 1 1 A GLU 0.530 1
ATOM 109 C CD . GLU 21 21 ? A 122.114 106.545 169.783 1 1 A GLU 0.530 1
ATOM 110 O OE1 . GLU 21 21 ? A 121.970 105.714 170.718 1 1 A GLU 0.530 1
ATOM 111 O OE2 . GLU 21 21 ? A 122.880 106.371 168.798 1 1 A GLU 0.530 1
ATOM 112 N N . CYS 22 22 ? A 118.331 109.113 173.188 1 1 A CYS 0.800 1
ATOM 113 C CA . CYS 22 22 ? A 117.337 109.166 174.227 1 1 A CYS 0.800 1
ATOM 114 C C . CYS 22 22 ? A 117.319 110.586 174.788 1 1 A CYS 0.800 1
ATOM 115 O O . CYS 22 22 ? A 118.158 110.972 175.593 1 1 A CYS 0.800 1
ATOM 116 C CB . CYS 22 22 ? A 117.664 108.099 175.322 1 1 A CYS 0.800 1
ATOM 117 S SG . CYS 22 22 ? A 119.420 108.002 175.836 1 1 A CYS 0.800 1
ATOM 118 N N . HIS 23 23 ? A 116.337 111.379 174.302 1 1 A HIS 0.840 1
ATOM 119 C CA . HIS 23 23 ? A 116.001 112.719 174.766 1 1 A HIS 0.840 1
ATOM 120 C C . HIS 23 23 ? A 115.180 112.721 176.089 1 1 A HIS 0.840 1
ATOM 121 O O . HIS 23 23 ? A 114.707 111.635 176.518 1 1 A HIS 0.840 1
ATOM 122 C CB . HIS 23 23 ? A 115.156 113.431 173.673 1 1 A HIS 0.840 1
ATOM 123 C CG . HIS 23 23 ? A 114.814 114.869 173.908 1 1 A HIS 0.840 1
ATOM 124 N ND1 . HIS 23 23 ? A 115.751 115.864 173.684 1 1 A HIS 0.840 1
ATOM 125 C CD2 . HIS 23 23 ? A 113.643 115.411 174.324 1 1 A HIS 0.840 1
ATOM 126 C CE1 . HIS 23 23 ? A 115.133 116.981 173.990 1 1 A HIS 0.840 1
ATOM 127 N NE2 . HIS 23 23 ? A 113.849 116.774 174.379 1 1 A HIS 0.840 1
ATOM 128 O OXT . HIS 23 23 ? A 114.990 113.831 176.661 1 1 A HIS 0.840 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.734
2 1 3 0.036
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 8 PHE 1 1.000
2 1 A 9 VAL 1 0.990
3 1 A 10 LEU 1 0.760
4 1 A 11 TRP 1 0.590
5 1 A 12 VAL 1 0.770
6 1 A 13 LEU 1 0.730
7 1 A 14 ILE 1 0.730
8 1 A 15 GLY 1 0.770
9 1 A 16 CYS 1 0.790
10 1 A 17 PHE 1 0.600
11 1 A 18 LEU 1 0.620
12 1 A 19 SER 1 0.590
13 1 A 20 GLY 1 0.640
14 1 A 21 GLU 1 0.530
15 1 A 22 CYS 1 0.800
16 1 A 23 HIS 1 0.840
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
1 license
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2 disclaimer
;The SWISS-MODEL SERVER produces theoretical models for
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