data_SMR-970a1da9e6a33b679a32e9f000a3ef0c_2 _entry.id SMR-970a1da9e6a33b679a32e9f000a3ef0c_2 _struct.entry_id SMR-970a1da9e6a33b679a32e9f000a3ef0c_2 _struct.pdbx_model_details ;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries: - Q8N4Q1/ MIA40_HUMAN, Mitochondrial intermembrane space import and assembly protein 40 Estimated model accuracy of this model is 0.087, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE). ; _struct.pdbx_structure_determination_methodology computational _struct.title 'Model for UniProtKB entries Q8N4Q1' _audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic _audit_conform.dict_name mmcif_ma.dic _audit_conform.dict_version 1.4.6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SWISS-MODEL Repository - new features and functionality' 'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132 2 'SWISS-MODEL: homology modelling of protein structures and complexes' 'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427 3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1) 1 18 2021 33507980 10.1371/journal.pcbi.1008667 4 'QMEANDisCo - distance constraints applied on model quality estimation' Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828 5 'OpenStructure: an integrated software framework for computational structural biology' 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579 10.1107/S0907444913007051 6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500 10.1186/1471-2105-10-421 7 'HH-suite3 for fast remote homology detection and deep protein annotation' 'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7 # # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bienert, S.' 1 primary 'Waterhouse, A.' 2 primary 'de Beer, T.A.P.' 3 primary 'Tauriello, G.' 4 primary 'Studer, G.' 5 primary 'Bordoli, L.' 6 primary 'Schwede, T.' 7 2 'Waterhouse, A.' 8 2 'Bertoni, M.' 9 2 'Bienert, S.' 10 2 'Studer, G.' 11 2 'Tauriello, G.' 12 2 'Gumienny, R.' 13 2 'Heer, F.T.' 14 2 'de Beer, T.A.P.' 15 2 'Rempfer, C.' 16 2 'Bordoli, L.' 17 2 'Lepore, R.' 18 2 'Schwede, T.' 19 3 'Studer, G.' 20 3 'Tauriello, G.' 21 3 'Bienert, S.' 22 3 'Biasini, M.' 23 3 'Johner, N.' 24 3 'Schwede, T.' 25 4 'Studer, G.' 26 4 'Rempfer, C.' 27 4 'Waterhouse, A.M.' 28 4 'Gumienny, R.' 29 4 'Haas, J.' 30 4 'Schwede, T.' 31 5 'Biasini, M.' 32 5 'Schmidt, T.' 33 5 'Bienert, S.' 34 5 'Mariani, V.' 35 5 'Studer, G.' 36 5 'Haas, J.' 37 5 'Johner, N.' 38 5 'Schenk, A.D.' 39 5 'Philippsen, A.' 40 5 'Schwede, T.' 41 6 'Camacho, C.' 42 6 'Coulouris, G.' 43 6 'Avagyan, V.' 44 6 'Ma, N.' 45 6 'Papadopoulos, J.' 46 6 'Bealer, K.' 47 6 'Madden, T.L.' 48 7 'Steinegger, M.' 49 7 'Meier, M.' 50 7 'Mirdita, M.' 51 7 'Vohringer, H.' 52 7 'Haunsberger, S.J.' 53 7 'Soding, J.' 54 # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location _software.citation_id 1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3 package https://swissmodel.expasy.org 2 2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library https://git.scicore.unibas.ch/schwede/ProMod3 3 3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1 library https://git.scicore.unibas.ch/schwede/QMEAN 4 4 OpenStructure 'data processing' 'Open-Source Computational Structural Biology Framework' 2.8.0 package https://openstructure.org/ 5 5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6 6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0 package https://github.com/soedinglab/hh-suite 7 # # loop_ _ma_software_group.ordinal_id _ma_software_group.group_id _ma_software_group.software_id _ma_software_group.parameter_group_id 1 1 5 . 2 2 1 . 3 2 4 . 4 2 5 . 5 2 6 . 6 3 1 . 7 3 4 . 8 4 1 . 9 4 2 . 10 4 4 . 11 5 3 . 12 6 1 . 13 6 3 . 14 6 4 . # # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bienert, S.' 1 'Waterhouse, A.' 2 'de Beer, T.A.P.' 3 'Tauriello, G.' 4 'Studer, G.' 5 'Bordoli, L.' 6 'Schwede, T.' 7 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight _chem_comp.ma_provenance ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core' ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core' ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core' ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core' CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core' GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core' GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core' GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core' HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core' ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core' MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core' PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core' PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core' SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core' THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core' TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core' TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core' VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core' # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man . 18551.630 1 . # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP MIA40_HUMAN Q8N4Q1 1 ;MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKS AFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKPAEQAEETAPIEATATKEEEG SS ; 'Mitochondrial intermembrane space import and assembly protein 40' # # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 142 1 142 # # loop_ _ma_target_ref_db_details.target_entity_id _ma_target_ref_db_details.db_name _ma_target_ref_db_details.db_name_other_details _ma_target_ref_db_details.db_code _ma_target_ref_db_details.db_accession _ma_target_ref_db_details.seq_db_isoform _ma_target_ref_db_details.seq_db_align_begin _ma_target_ref_db_details.seq_db_align_end _ma_target_ref_db_details.ncbi_taxonomy_id _ma_target_ref_db_details.organism_scientific _ma_target_ref_db_details.seq_db_sequence_version_date _ma_target_ref_db_details.seq_db_sequence_checksum 1 UNP . MIA40_HUMAN Q8N4Q1 . 1 142 9606 'Homo sapiens (Human)' 2002-10-01 87563CADF249800C # # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polypeptide(L) no no B ;MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKS AFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKPAEQAEETAPIEATATKEEEG SS ; ;MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKS AFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKPAEQAEETAPIEATATKEEEG SS ; # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET . 1 2 SER . 1 3 TYR . 1 4 CYS . 1 5 ARG . 1 6 GLN . 1 7 GLU . 1 8 GLY . 1 9 LYS . 1 10 ASP . 1 11 ARG . 1 12 ILE . 1 13 ILE . 1 14 PHE . 1 15 VAL . 1 16 THR . 1 17 LYS . 1 18 GLU . 1 19 ASP . 1 20 HIS . 1 21 GLU . 1 22 THR . 1 23 PRO . 1 24 SER . 1 25 SER . 1 26 ALA . 1 27 GLU . 1 28 LEU . 1 29 VAL . 1 30 ALA . 1 31 ASP . 1 32 ASP . 1 33 PRO . 1 34 ASN . 1 35 ASP . 1 36 PRO . 1 37 TYR . 1 38 GLU . 1 39 GLU . 1 40 HIS . 1 41 GLY . 1 42 LEU . 1 43 ILE . 1 44 LEU . 1 45 PRO . 1 46 ASN . 1 47 GLY . 1 48 ASN . 1 49 ILE . 1 50 ASN . 1 51 TRP . 1 52 ASN . 1 53 CYS . 1 54 PRO . 1 55 CYS . 1 56 LEU . 1 57 GLY . 1 58 GLY . 1 59 MET . 1 60 ALA . 1 61 SER . 1 62 GLY . 1 63 PRO . 1 64 CYS . 1 65 GLY . 1 66 GLU . 1 67 GLN . 1 68 PHE . 1 69 LYS . 1 70 SER . 1 71 ALA . 1 72 PHE . 1 73 SER . 1 74 CYS . 1 75 PHE . 1 76 HIS . 1 77 TYR . 1 78 SER . 1 79 THR . 1 80 GLU . 1 81 GLU . 1 82 ILE . 1 83 LYS . 1 84 GLY . 1 85 SER . 1 86 ASP . 1 87 CYS . 1 88 VAL . 1 89 ASP . 1 90 GLN . 1 91 PHE . 1 92 ARG . 1 93 ALA . 1 94 MET . 1 95 GLN . 1 96 GLU . 1 97 CYS . 1 98 MET . 1 99 GLN . 1 100 LYS . 1 101 TYR . 1 102 PRO . 1 103 ASP . 1 104 LEU . 1 105 TYR . 1 106 PRO . 1 107 GLN . 1 108 GLU . 1 109 ASP . 1 110 GLU . 1 111 ASP . 1 112 GLU . 1 113 GLU . 1 114 GLU . 1 115 GLU . 1 116 ARG . 1 117 GLU . 1 118 LYS . 1 119 LYS . 1 120 PRO . 1 121 ALA . 1 122 GLU . 1 123 GLN . 1 124 ALA . 1 125 GLU . 1 126 GLU . 1 127 THR . 1 128 ALA . 1 129 PRO . 1 130 ILE . 1 131 GLU . 1 132 ALA . 1 133 THR . 1 134 ALA . 1 135 THR . 1 136 LYS . 1 137 GLU . 1 138 GLU . 1 139 GLU . 1 140 GLY . 1 141 SER . 1 142 SER . # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 . # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 ? ? ? B . A 1 2 SER 2 2 SER SER B . A 1 3 TYR 3 3 TYR TYR B . A 1 4 CYS 4 4 CYS CYS B . A 1 5 ARG 5 5 ARG ARG B . A 1 6 GLN 6 6 GLN GLN B . A 1 7 GLU 7 7 GLU GLU B . A 1 8 GLY 8 8 GLY GLY B . A 1 9 LYS 9 9 LYS LYS B . A 1 10 ASP 10 10 ASP ASP B . A 1 11 ARG 11 11 ARG ARG B . A 1 12 ILE 12 12 ILE ILE B . A 1 13 ILE 13 13 ILE ILE B . A 1 14 PHE 14 14 PHE PHE B . A 1 15 VAL 15 15 VAL VAL B . A 1 16 THR 16 16 THR THR B . A 1 17 LYS 17 17 LYS LYS B . A 1 18 GLU 18 18 GLU GLU B . A 1 19 ASP 19 19 ASP ASP B . A 1 20 HIS 20 ? ? ? B . A 1 21 GLU 21 ? ? ? B . A 1 22 THR 22 ? ? ? B . A 1 23 PRO 23 ? ? ? B . A 1 24 SER 24 ? ? ? B . A 1 25 SER 25 ? ? ? B . A 1 26 ALA 26 ? ? ? B . A 1 27 GLU 27 ? ? ? B . A 1 28 LEU 28 ? ? ? B . A 1 29 VAL 29 ? ? ? B . A 1 30 ALA 30 ? ? ? B . A 1 31 ASP 31 ? ? ? B . A 1 32 ASP 32 ? ? ? B . A 1 33 PRO 33 ? ? ? B . A 1 34 ASN 34 ? ? ? B . A 1 35 ASP 35 ? ? ? B . A 1 36 PRO 36 ? ? ? B . A 1 37 TYR 37 ? ? ? B . A 1 38 GLU 38 ? ? ? B . A 1 39 GLU 39 ? ? ? B . A 1 40 HIS 40 ? ? ? B . A 1 41 GLY 41 ? ? ? B . A 1 42 LEU 42 ? ? ? B . A 1 43 ILE 43 ? ? ? B . A 1 44 LEU 44 ? ? ? B . A 1 45 PRO 45 ? ? ? B . A 1 46 ASN 46 ? ? ? B . A 1 47 GLY 47 ? ? ? B . A 1 48 ASN 48 ? ? ? B . A 1 49 ILE 49 ? ? ? B . A 1 50 ASN 50 ? ? ? B . A 1 51 TRP 51 ? ? ? B . A 1 52 ASN 52 ? ? ? B . A 1 53 CYS 53 ? ? ? B . A 1 54 PRO 54 ? ? ? B . A 1 55 CYS 55 ? ? ? B . A 1 56 LEU 56 ? ? ? B . A 1 57 GLY 57 ? ? ? B . A 1 58 GLY 58 ? ? ? B . A 1 59 MET 59 ? ? ? B . A 1 60 ALA 60 ? ? ? B . A 1 61 SER 61 ? ? ? B . A 1 62 GLY 62 ? ? ? B . A 1 63 PRO 63 ? ? ? B . A 1 64 CYS 64 ? ? ? B . A 1 65 GLY 65 ? ? ? B . A 1 66 GLU 66 ? ? ? B . A 1 67 GLN 67 ? ? ? B . A 1 68 PHE 68 ? ? ? B . A 1 69 LYS 69 ? ? ? B . A 1 70 SER 70 ? ? ? B . A 1 71 ALA 71 ? ? ? B . A 1 72 PHE 72 ? ? ? B . A 1 73 SER 73 ? ? ? B . A 1 74 CYS 74 ? ? ? B . A 1 75 PHE 75 ? ? ? B . A 1 76 HIS 76 ? ? ? B . A 1 77 TYR 77 ? ? ? B . A 1 78 SER 78 ? ? ? B . A 1 79 THR 79 ? ? ? B . A 1 80 GLU 80 ? ? ? B . A 1 81 GLU 81 ? ? ? B . A 1 82 ILE 82 ? ? ? B . A 1 83 LYS 83 ? ? ? B . A 1 84 GLY 84 ? ? ? B . A 1 85 SER 85 ? ? ? B . A 1 86 ASP 86 ? ? ? B . A 1 87 CYS 87 ? ? ? B . A 1 88 VAL 88 ? ? ? B . A 1 89 ASP 89 ? ? ? B . A 1 90 GLN 90 ? ? ? B . A 1 91 PHE 91 ? ? ? B . A 1 92 ARG 92 ? ? ? B . A 1 93 ALA 93 ? ? ? B . A 1 94 MET 94 ? ? ? B . A 1 95 GLN 95 ? ? ? B . A 1 96 GLU 96 ? ? ? B . A 1 97 CYS 97 ? ? ? B . A 1 98 MET 98 ? ? ? B . A 1 99 GLN 99 ? ? ? B . A 1 100 LYS 100 ? ? ? B . A 1 101 TYR 101 ? ? ? B . A 1 102 PRO 102 ? ? ? B . A 1 103 ASP 103 ? ? ? B . A 1 104 LEU 104 ? ? ? B . A 1 105 TYR 105 ? ? ? B . A 1 106 PRO 106 ? ? ? B . A 1 107 GLN 107 ? ? ? B . A 1 108 GLU 108 ? ? ? B . A 1 109 ASP 109 ? ? ? B . A 1 110 GLU 110 ? ? ? B . A 1 111 ASP 111 ? ? ? B . A 1 112 GLU 112 ? ? ? B . A 1 113 GLU 113 ? ? ? B . A 1 114 GLU 114 ? ? ? B . A 1 115 GLU 115 ? ? ? B . A 1 116 ARG 116 ? ? ? B . A 1 117 GLU 117 ? ? ? B . A 1 118 LYS 118 ? ? ? B . A 1 119 LYS 119 ? ? ? B . A 1 120 PRO 120 ? ? ? B . A 1 121 ALA 121 ? ? ? B . A 1 122 GLU 122 ? ? ? B . A 1 123 GLN 123 ? ? ? B . A 1 124 ALA 124 ? ? ? B . A 1 125 GLU 125 ? ? ? B . A 1 126 GLU 126 ? ? ? B . A 1 127 THR 127 ? ? ? B . A 1 128 ALA 128 ? ? ? B . A 1 129 PRO 129 ? ? ? B . A 1 130 ILE 130 ? ? ? B . A 1 131 GLU 131 ? ? ? B . A 1 132 ALA 132 ? ? ? B . A 1 133 THR 133 ? ? ? B . A 1 134 ALA 134 ? ? ? B . A 1 135 THR 135 ? ? ? B . A 1 136 LYS 136 ? ? ? B . A 1 137 GLU 137 ? ? ? B . A 1 138 GLU 138 ? ? ? B . A 1 139 GLU 139 ? ? ? B . A 1 140 GLY 140 ? ? ? B . A 1 141 SER 141 ? ? ? B . A 1 142 SER 142 ? ? ? B . # # loop_ _ma_data.id _ma_data.name _ma_data.content_type _ma_data.content_type_other_details 1 'Mitochondrial intermembrane space import and assembly protein 40 {PDB ID=8qns, label_asym_id=E, auth_asym_id=M, SMTL ID=8qns.1.B}' 'template structure' . 2 . target . 3 'Target-template alignment by BLAST to 8qns, label_asym_id=E' 'target-template alignment' . 4 'model 2' 'model coordinates' . 5 SMTL 'reference database' . 6 PDB 'reference database' . 7 'Template search output' other 'Results of the sequence search' # # loop_ _ma_data_group.ordinal_id _ma_data_group.group_id _ma_data_group.data_id 1 1 2 2 1 5 3 1 6 4 2 7 5 3 2 6 3 1 7 3 3 8 4 1 9 4 3 10 5 4 # # loop_ _ma_data_ref_db.data_id _ma_data_ref_db.name _ma_data_ref_db.location_url _ma_data_ref_db.version _ma_data_ref_db.release_date 5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-14 6 PDB https://www.wwpdb.org . 2024-11-08 # # loop_ _ma_target_entity.entity_id _ma_target_entity.data_id _ma_target_entity.origin 1 2 'reference database' # # loop_ _ma_target_entity_instance.asym_id _ma_target_entity_instance.entity_id _ma_target_entity_instance.details A 1 . # # loop_ _ma_template_trans_matrix.id _ma_template_trans_matrix.rot_matrix[1][1] _ma_template_trans_matrix.rot_matrix[2][1] _ma_template_trans_matrix.rot_matrix[3][1] _ma_template_trans_matrix.rot_matrix[1][2] _ma_template_trans_matrix.rot_matrix[2][2] _ma_template_trans_matrix.rot_matrix[3][2] _ma_template_trans_matrix.rot_matrix[1][3] _ma_template_trans_matrix.rot_matrix[2][3] _ma_template_trans_matrix.rot_matrix[3][3] _ma_template_trans_matrix.tr_vector[1] _ma_template_trans_matrix.tr_vector[2] _ma_template_trans_matrix.tr_vector[3] 1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0 0 0 # # loop_ _ma_template_details.ordinal_id _ma_template_details.template_id _ma_template_details.template_origin _ma_template_details.template_entity_type _ma_template_details.template_trans_matrix_id _ma_template_details.template_data_id _ma_template_details.target_asym_id _ma_template_details.template_label_asym_id _ma_template_details.template_label_entity_id _ma_template_details.template_model_num _ma_template_details.template_auth_asym_id 1 1 'reference database' polymer 1 1 A E 2 1 M # # loop_ _ma_template_poly.template_id _ma_template_poly.seq_one_letter_code _ma_template_poly.seq_one_letter_code_can 1 MSYCRQEGKDRIIFVTKEDHETPSSAE MSYCRQEGKDRIIFVTKEDHETPSSAE # # loop_ _ma_template_poly_segment.id _ma_template_poly_segment.template_id _ma_template_poly_segment.residue_number_begin _ma_template_poly_segment.residue_number_end 1 1 1 27 # # loop_ _ma_template_ref_db_details.template_id _ma_template_ref_db_details.db_name _ma_template_ref_db_details.db_name_other_details _ma_template_ref_db_details.db_accession_code _ma_template_ref_db_details.db_version_date 1 PDB . 8qns 2024-05-08 # # loop_ _ma_target_template_poly_mapping.id _ma_target_template_poly_mapping.template_segment_id _ma_target_template_poly_mapping.target_asym_id _ma_target_template_poly_mapping.target_seq_id_begin _ma_target_template_poly_mapping.target_seq_id_end 1 1 A 1 142 # # loop_ _ma_alignment_info.alignment_id _ma_alignment_info.data_id _ma_alignment_info.software_group_id _ma_alignment_info.alignment_length _ma_alignment_info.alignment_type _ma_alignment_info.alignment_mode 1 3 1 142 'target-template pairwise alignment' local # # loop_ _ma_alignment_details.ordinal_id _ma_alignment_details.alignment_id _ma_alignment_details.template_segment_id _ma_alignment_details.target_asym_id _ma_alignment_details.score_type _ma_alignment_details.score_type_other_details _ma_alignment_details.score_value _ma_alignment_details.percent_sequence_identity _ma_alignment_details.sequence_identity_denominator _ma_alignment_details.sequence_identity_denominator_other_details 1 1 1 A 'BLAST e-value' . 6.53e-12 100.000 'Number of aligned residue pairs (not including the gaps)' . # # loop_ _ma_alignment.ordinal_id _ma_alignment.alignment_id _ma_alignment.target_template_flag _ma_alignment.sequence 1 1 1 MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKPAEQAEETAPIEATATKEEEGSS 2 1 2 MSYCRQEGKDRIIFVTKEDHETPSSAE------------------------------------------------------------------------------------------------------------------- # # loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.step_name _ma_protocol_step.details _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2 1 2 2 1 2 'template selection' 'template selection' 'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4 3 1 3 modeling 'homology modeling' 'SWISS-MODEL auto-model mode using ProMod3 on 8qns.1' 4 3 5 # # loop_ _ma_model_list.ordinal_id _ma_model_list.model_id _ma_model_list.model_group_id _ma_model_list.model_name _ma_model_list.model_group_name _ma_model_list.data_id _ma_model_list.model_type _ma_model_list.model_type_other_details 1 1 1 'model 2' . 4 'Homology model' . # # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.auth_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.label_entity_id _atom_site.auth_asym_id _atom_site.auth_comp_id _atom_site.B_iso_or_equiv _atom_site.pdbx_PDB_model_num ATOM 1 N N . SER 2 2 ? A -31.431 38.520 38.743 1 1 B SER 0.470 1 ATOM 2 C CA . SER 2 2 ? A -30.871 37.893 37.480 1 1 B SER 0.470 1 ATOM 3 C C . SER 2 2 ? A -30.045 38.859 36.614 1 1 B SER 0.470 1 ATOM 4 O O . SER 2 2 ? A -29.978 38.707 35.414 1 1 B SER 0.470 1 ATOM 5 C CB . SER 2 2 ? A -32.023 37.249 36.620 1 1 B SER 0.470 1 ATOM 6 O OG . SER 2 2 ? A -31.558 36.290 35.669 1 1 B SER 0.470 1 ATOM 7 N N . TYR 3 3 ? A -29.416 39.928 37.203 1 1 B TYR 0.480 1 ATOM 8 C CA . TYR 3 3 ? A -28.504 40.843 36.525 1 1 B TYR 0.480 1 ATOM 9 C C . TYR 3 3 ? A -27.349 40.096 35.832 1 1 B TYR 0.480 1 ATOM 10 O O . TYR 3 3 ? A -26.373 39.704 36.449 1 1 B TYR 0.480 1 ATOM 11 C CB . TYR 3 3 ? A -27.984 41.852 37.610 1 1 B TYR 0.480 1 ATOM 12 C CG . TYR 3 3 ? A -26.944 42.841 37.155 1 1 B TYR 0.480 1 ATOM 13 C CD1 . TYR 3 3 ? A -25.852 43.130 37.993 1 1 B TYR 0.480 1 ATOM 14 C CD2 . TYR 3 3 ? A -27.042 43.506 35.925 1 1 B TYR 0.480 1 ATOM 15 C CE1 . TYR 3 3 ? A -24.866 44.041 37.596 1 1 B TYR 0.480 1 ATOM 16 C CE2 . TYR 3 3 ? A -26.057 44.421 35.526 1 1 B TYR 0.480 1 ATOM 17 C CZ . TYR 3 3 ? A -24.965 44.679 36.360 1 1 B TYR 0.480 1 ATOM 18 O OH . TYR 3 3 ? A -23.955 45.574 35.963 1 1 B TYR 0.480 1 ATOM 19 N N . CYS 4 4 ? A -27.502 39.902 34.500 1 1 B CYS 0.870 1 ATOM 20 C CA . CYS 4 4 ? A -26.598 39.159 33.653 1 1 B CYS 0.870 1 ATOM 21 C C . CYS 4 4 ? A -25.959 40.185 32.783 1 1 B CYS 0.870 1 ATOM 22 O O . CYS 4 4 ? A -26.620 41.006 32.148 1 1 B CYS 0.870 1 ATOM 23 C CB . CYS 4 4 ? A -27.317 38.069 32.782 1 1 B CYS 0.870 1 ATOM 24 S SG . CYS 4 4 ? A -26.256 37.116 31.627 1 1 B CYS 0.870 1 ATOM 25 N N . ARG 5 5 ? A -24.630 40.162 32.755 1 1 B ARG 0.840 1 ATOM 26 C CA . ARG 5 5 ? A -23.889 41.023 31.896 1 1 B ARG 0.840 1 ATOM 27 C C . ARG 5 5 ? A -22.731 40.231 31.352 1 1 B ARG 0.840 1 ATOM 28 O O . ARG 5 5 ? A -22.211 39.304 31.993 1 1 B ARG 0.840 1 ATOM 29 C CB . ARG 5 5 ? A -23.520 42.329 32.637 1 1 B ARG 0.840 1 ATOM 30 C CG . ARG 5 5 ? A -22.226 42.285 33.459 1 1 B ARG 0.840 1 ATOM 31 C CD . ARG 5 5 ? A -22.135 43.474 34.405 1 1 B ARG 0.840 1 ATOM 32 N NE . ARG 5 5 ? A -20.710 43.622 34.778 1 1 B ARG 0.840 1 ATOM 33 C CZ . ARG 5 5 ? A -20.202 43.759 35.995 1 1 B ARG 0.840 1 ATOM 34 N NH1 . ARG 5 5 ? A -20.972 43.678 37.076 1 1 B ARG 0.840 1 ATOM 35 N NH2 . ARG 5 5 ? A -18.910 44.053 36.102 1 1 B ARG 0.840 1 ATOM 36 N N . GLN 6 6 ? A -22.318 40.530 30.123 1 1 B GLN 0.970 1 ATOM 37 C CA . GLN 6 6 ? A -21.306 39.799 29.404 1 1 B GLN 0.970 1 ATOM 38 C C . GLN 6 6 ? A -20.129 40.707 29.150 1 1 B GLN 0.970 1 ATOM 39 O O . GLN 6 6 ? A -20.252 41.671 28.384 1 1 B GLN 0.970 1 ATOM 40 C CB . GLN 6 6 ? A -21.871 39.359 28.032 1 1 B GLN 0.970 1 ATOM 41 C CG . GLN 6 6 ? A -20.863 38.623 27.114 1 1 B GLN 0.970 1 ATOM 42 C CD . GLN 6 6 ? A -20.622 37.192 27.586 1 1 B GLN 0.970 1 ATOM 43 O OE1 . GLN 6 6 ? A -21.501 36.342 27.479 1 1 B GLN 0.970 1 ATOM 44 N NE2 . GLN 6 6 ? A -19.414 36.905 28.124 1 1 B GLN 0.970 1 ATOM 45 N N . GLU 7 7 ? A -18.961 40.420 29.746 1 1 B GLU 0.930 1 ATOM 46 C CA . GLU 7 7 ? A -17.791 41.267 29.689 1 1 B GLU 0.930 1 ATOM 47 C C . GLU 7 7 ? A -16.698 40.500 28.955 1 1 B GLU 0.930 1 ATOM 48 O O . GLU 7 7 ? A -15.853 39.817 29.536 1 1 B GLU 0.930 1 ATOM 49 C CB . GLU 7 7 ? A -17.320 41.662 31.116 1 1 B GLU 0.930 1 ATOM 50 C CG . GLU 7 7 ? A -18.432 42.203 32.059 1 1 B GLU 0.930 1 ATOM 51 C CD . GLU 7 7 ? A -18.824 43.665 31.868 1 1 B GLU 0.930 1 ATOM 52 O OE1 . GLU 7 7 ? A -19.010 44.323 32.935 1 1 B GLU 0.930 1 ATOM 53 O OE2 . GLU 7 7 ? A -18.986 44.125 30.718 1 1 B GLU 0.930 1 ATOM 54 N N . GLY 8 8 ? A -16.697 40.546 27.608 1 1 B GLY 0.790 1 ATOM 55 C CA . GLY 8 8 ? A -15.762 39.762 26.802 1 1 B GLY 0.790 1 ATOM 56 C C . GLY 8 8 ? A -16.056 38.284 26.818 1 1 B GLY 0.790 1 ATOM 57 O O . GLY 8 8 ? A -17.178 37.867 26.538 1 1 B GLY 0.790 1 ATOM 58 N N . LYS 9 9 ? A -15.060 37.435 27.136 1 1 B LYS 0.760 1 ATOM 59 C CA . LYS 9 9 ? A -15.261 36.002 27.253 1 1 B LYS 0.760 1 ATOM 60 C C . LYS 9 9 ? A -15.928 35.627 28.577 1 1 B LYS 0.760 1 ATOM 61 O O . LYS 9 9 ? A -16.504 34.549 28.707 1 1 B LYS 0.760 1 ATOM 62 C CB . LYS 9 9 ? A -13.901 35.254 27.107 1 1 B LYS 0.760 1 ATOM 63 C CG . LYS 9 9 ? A -12.944 35.490 28.285 1 1 B LYS 0.760 1 ATOM 64 C CD . LYS 9 9 ? A -11.577 34.809 28.152 1 1 B LYS 0.760 1 ATOM 65 C CE . LYS 9 9 ? A -10.595 35.218 29.266 1 1 B LYS 0.760 1 ATOM 66 N NZ . LYS 9 9 ? A -11.177 35.033 30.616 1 1 B LYS 0.760 1 ATOM 67 N N . ASP 10 10 ? A -15.895 36.525 29.588 1 1 B ASP 0.970 1 ATOM 68 C CA . ASP 10 10 ? A -16.317 36.221 30.932 1 1 B ASP 0.970 1 ATOM 69 C C . ASP 10 10 ? A -17.744 36.744 31.119 1 1 B ASP 0.970 1 ATOM 70 O O . ASP 10 10 ? A -18.057 37.909 30.840 1 1 B ASP 0.970 1 ATOM 71 C CB . ASP 10 10 ? A -15.302 36.817 31.957 1 1 B ASP 0.970 1 ATOM 72 C CG . ASP 10 10 ? A -13.892 36.321 31.663 1 1 B ASP 0.970 1 ATOM 73 O OD1 . ASP 10 10 ? A -13.679 35.081 31.610 1 1 B ASP 0.970 1 ATOM 74 O OD2 . ASP 10 10 ? A -12.951 37.126 31.435 1 1 B ASP 0.970 1 ATOM 75 N N . ARG 11 11 ? A -18.691 35.896 31.559 1 1 B ARG 0.840 1 ATOM 76 C CA . ARG 11 11 ? A -20.087 36.267 31.706 1 1 B ARG 0.840 1 ATOM 77 C C . ARG 11 11 ? A -20.458 36.259 33.163 1 1 B ARG 0.840 1 ATOM 78 O O . ARG 11 11 ? A -20.145 35.312 33.896 1 1 B ARG 0.840 1 ATOM 79 C CB . ARG 11 11 ? A -20.996 35.300 30.915 1 1 B ARG 0.840 1 ATOM 80 C CG . ARG 11 11 ? A -22.516 35.547 31.017 1 1 B ARG 0.840 1 ATOM 81 C CD . ARG 11 11 ? A -23.219 35.014 29.768 1 1 B ARG 0.840 1 ATOM 82 N NE . ARG 11 11 ? A -24.631 34.664 30.102 1 1 B ARG 0.840 1 ATOM 83 C CZ . ARG 11 11 ? A -25.490 34.210 29.182 1 1 B ARG 0.840 1 ATOM 84 N NH1 . ARG 11 11 ? A -25.115 34.078 27.912 1 1 B ARG 0.840 1 ATOM 85 N NH2 . ARG 11 11 ? A -26.732 33.880 29.527 1 1 B ARG 0.840 1 ATOM 86 N N . ILE 12 12 ? A -21.105 37.324 33.647 1 1 B ILE 0.900 1 ATOM 87 C CA . ILE 12 12 ? A -21.333 37.538 35.052 1 1 B ILE 0.900 1 ATOM 88 C C . ILE 12 12 ? A -22.815 37.548 35.271 1 1 B ILE 0.900 1 ATOM 89 O O . ILE 12 12 ? A -23.541 38.363 34.682 1 1 B ILE 0.900 1 ATOM 90 C CB . ILE 12 12 ? A -20.717 38.849 35.519 1 1 B ILE 0.900 1 ATOM 91 C CG1 . ILE 12 12 ? A -19.207 38.885 35.172 1 1 B ILE 0.900 1 ATOM 92 C CG2 . ILE 12 12 ? A -20.961 39.028 37.038 1 1 B ILE 0.900 1 ATOM 93 C CD1 . ILE 12 12 ? A -18.585 40.272 35.356 1 1 B ILE 0.900 1 ATOM 94 N N . ILE 13 13 ? A -23.313 36.642 36.117 1 1 B ILE 0.880 1 ATOM 95 C CA . ILE 13 13 ? A -24.707 36.526 36.472 1 1 B ILE 0.880 1 ATOM 96 C C . ILE 13 13 ? A -24.823 36.701 37.961 1 1 B ILE 0.880 1 ATOM 97 O O . ILE 13 13 ? A -24.255 35.922 38.747 1 1 B ILE 0.880 1 ATOM 98 C CB . ILE 13 13 ? A -25.301 35.184 36.038 1 1 B ILE 0.880 1 ATOM 99 C CG1 . ILE 13 13 ? A -25.301 35.125 34.489 1 1 B ILE 0.880 1 ATOM 100 C CG2 . ILE 13 13 ? A -26.721 34.987 36.635 1 1 B ILE 0.880 1 ATOM 101 C CD1 . ILE 13 13 ? A -25.891 33.845 33.883 1 1 B ILE 0.880 1 ATOM 102 N N . PHE 14 14 ? A -25.563 37.721 38.402 1 1 B PHE 0.810 1 ATOM 103 C CA . PHE 14 14 ? A -25.932 37.936 39.784 1 1 B PHE 0.810 1 ATOM 104 C C . PHE 14 14 ? A -27.357 37.461 40.025 1 1 B PHE 0.810 1 ATOM 105 O O . PHE 14 14 ? A -28.282 37.745 39.242 1 1 B PHE 0.810 1 ATOM 106 C CB . PHE 14 14 ? A -25.912 39.436 40.159 1 1 B PHE 0.810 1 ATOM 107 C CG . PHE 14 14 ? A -24.534 39.942 40.437 1 1 B PHE 0.810 1 ATOM 108 C CD1 . PHE 14 14 ? A -24.003 39.838 41.730 1 1 B PHE 0.810 1 ATOM 109 C CD2 . PHE 14 14 ? A -23.785 40.591 39.445 1 1 B PHE 0.810 1 ATOM 110 C CE1 . PHE 14 14 ? A -22.751 40.384 42.033 1 1 B PHE 0.810 1 ATOM 111 C CE2 . PHE 14 14 ? A -22.537 41.150 39.747 1 1 B PHE 0.810 1 ATOM 112 C CZ . PHE 14 14 ? A -22.021 41.049 41.043 1 1 B PHE 0.810 1 ATOM 113 N N . VAL 15 15 ? A -27.596 36.755 41.139 1 1 B VAL 0.690 1 ATOM 114 C CA . VAL 15 15 ? A -28.878 36.206 41.530 1 1 B VAL 0.690 1 ATOM 115 C C . VAL 15 15 ? A -29.043 36.431 43.009 1 1 B VAL 0.690 1 ATOM 116 O O . VAL 15 15 ? A -28.066 36.500 43.762 1 1 B VAL 0.690 1 ATOM 117 C CB . VAL 15 15 ? A -29.084 34.721 41.194 1 1 B VAL 0.690 1 ATOM 118 C CG1 . VAL 15 15 ? A -29.832 34.607 39.850 1 1 B VAL 0.690 1 ATOM 119 C CG2 . VAL 15 15 ? A -27.743 33.951 41.180 1 1 B VAL 0.690 1 ATOM 120 N N . THR 16 16 ? A -30.309 36.610 43.425 1 1 B THR 0.580 1 ATOM 121 C CA . THR 16 16 ? A -30.770 37.118 44.702 1 1 B THR 0.580 1 ATOM 122 C C . THR 16 16 ? A -31.454 36.038 45.507 1 1 B THR 0.580 1 ATOM 123 O O . THR 16 16 ? A -32.300 36.382 46.325 1 1 B THR 0.580 1 ATOM 124 C CB . THR 16 16 ? A -31.698 38.347 44.571 1 1 B THR 0.580 1 ATOM 125 O OG1 . THR 16 16 ? A -32.347 38.343 43.297 1 1 B THR 0.580 1 ATOM 126 C CG2 . THR 16 16 ? A -30.944 39.688 44.671 1 1 B THR 0.580 1 ATOM 127 N N . LYS 17 17 ? A -31.159 34.722 45.378 1 1 B LYS 0.550 1 ATOM 128 C CA . LYS 17 17 ? A -31.711 33.645 46.220 1 1 B LYS 0.550 1 ATOM 129 C C . LYS 17 17 ? A -33.139 33.190 45.897 1 1 B LYS 0.550 1 ATOM 130 O O . LYS 17 17 ? A -33.524 32.094 46.269 1 1 B LYS 0.550 1 ATOM 131 C CB . LYS 17 17 ? A -31.601 33.951 47.771 1 1 B LYS 0.550 1 ATOM 132 C CG . LYS 17 17 ? A -32.906 34.071 48.625 1 1 B LYS 0.550 1 ATOM 133 C CD . LYS 17 17 ? A -33.146 35.429 49.332 1 1 B LYS 0.550 1 ATOM 134 C CE . LYS 17 17 ? A -34.484 36.125 48.969 1 1 B LYS 0.550 1 ATOM 135 N NZ . LYS 17 17 ? A -34.390 36.905 47.714 1 1 B LYS 0.550 1 ATOM 136 N N . GLU 18 18 ? A -33.987 34.078 45.308 1 1 B GLU 0.340 1 ATOM 137 C CA . GLU 18 18 ? A -35.393 33.818 45.043 1 1 B GLU 0.340 1 ATOM 138 C C . GLU 18 18 ? A -35.524 32.924 43.829 1 1 B GLU 0.340 1 ATOM 139 O O . GLU 18 18 ? A -34.951 33.202 42.772 1 1 B GLU 0.340 1 ATOM 140 C CB . GLU 18 18 ? A -36.288 35.108 44.960 1 1 B GLU 0.340 1 ATOM 141 C CG . GLU 18 18 ? A -36.290 35.934 43.648 1 1 B GLU 0.340 1 ATOM 142 C CD . GLU 18 18 ? A -35.007 36.718 43.476 1 1 B GLU 0.340 1 ATOM 143 O OE1 . GLU 18 18 ? A -35.038 37.913 43.870 1 1 B GLU 0.340 1 ATOM 144 O OE2 . GLU 18 18 ? A -33.952 36.198 43.032 1 1 B GLU 0.340 1 ATOM 145 N N . ASP 19 19 ? A -36.240 31.806 43.976 1 1 B ASP 0.430 1 ATOM 146 C CA . ASP 19 19 ? A -36.243 30.720 43.036 1 1 B ASP 0.430 1 ATOM 147 C C . ASP 19 19 ? A -37.731 30.341 42.739 1 1 B ASP 0.430 1 ATOM 148 O O . ASP 19 19 ? A -38.652 30.941 43.370 1 1 B ASP 0.430 1 ATOM 149 C CB . ASP 19 19 ? A -35.430 29.554 43.685 1 1 B ASP 0.430 1 ATOM 150 C CG . ASP 19 19 ? A -34.042 29.351 43.084 1 1 B ASP 0.430 1 ATOM 151 O OD1 . ASP 19 19 ? A -33.127 30.172 43.355 1 1 B ASP 0.430 1 ATOM 152 O OD2 . ASP 19 19 ? A -33.851 28.305 42.404 1 1 B ASP 0.430 1 ATOM 153 O OXT . ASP 19 19 ? A -37.970 29.463 41.864 1 1 B ASP 0.430 1 # # loop_ _atom_type.symbol C N O S # # loop_ _ma_qa_metric.id _ma_qa_metric.name _ma_qa_metric.description _ma_qa_metric.type _ma_qa_metric.mode _ma_qa_metric.type_other_details _ma_qa_metric.software_group_id 1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' local . 5 2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' global . 5 3 GMQE 'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.' 'normalized score' global . 6 # # loop_ _ma_qa_metric_global.ordinal_id _ma_qa_metric_global.model_id _ma_qa_metric_global.metric_id _ma_qa_metric_global.metric_value 1 1 2 0.728 2 1 3 0.087 # # loop_ _ma_qa_metric_local.ordinal_id _ma_qa_metric_local.model_id _ma_qa_metric_local.label_asym_id _ma_qa_metric_local.label_seq_id _ma_qa_metric_local.label_comp_id _ma_qa_metric_local.metric_id _ma_qa_metric_local.metric_value 1 1 A 2 SER 1 0.470 2 1 A 3 TYR 1 0.480 3 1 A 4 CYS 1 0.870 4 1 A 5 ARG 1 0.840 5 1 A 6 GLN 1 0.970 6 1 A 7 GLU 1 0.930 7 1 A 8 GLY 1 0.790 8 1 A 9 LYS 1 0.760 9 1 A 10 ASP 1 0.970 10 1 A 11 ARG 1 0.840 11 1 A 12 ILE 1 0.900 12 1 A 13 ILE 1 0.880 13 1 A 14 PHE 1 0.810 14 1 A 15 VAL 1 0.690 15 1 A 16 THR 1 0.580 16 1 A 17 LYS 1 0.550 17 1 A 18 GLU 1 0.340 18 1 A 19 ASP 1 0.430 # # loop_ _pdbx_data_usage.id _pdbx_data_usage.type _pdbx_data_usage.details _pdbx_data_usage.url 1 license ;This SWISS-MODEL protein model is copyright. 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