data_SMR-56a1302b3afc06213f1bd619447509cc_1 _entry.id SMR-56a1302b3afc06213f1bd619447509cc_1 _struct.entry_id SMR-56a1302b3afc06213f1bd619447509cc_1 _struct.pdbx_model_details ;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries: - P11836/ CD20_HUMAN, B-lymphocyte antigen CD20 Estimated model accuracy of this model is 0.197, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE). ; _struct.pdbx_structure_determination_methodology computational _struct.title 'Model for UniProtKB entries P11836' _audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic _audit_conform.dict_name mmcif_ma.dic _audit_conform.dict_version 1.4.6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SWISS-MODEL Repository - new features and functionality' 'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132 2 'SWISS-MODEL: homology modelling of protein structures and complexes' 'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427 3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1) 1 18 2021 33507980 10.1371/journal.pcbi.1008667 4 'QMEANDisCo - distance constraints applied on model quality estimation' Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828 5 'OpenStructure: an integrated software framework for computational structural biology' 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579 10.1107/S0907444913007051 6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500 10.1186/1471-2105-10-421 7 'HH-suite3 for fast remote homology detection and deep protein annotation' 'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7 # # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bienert, S.' 1 primary 'Waterhouse, A.' 2 primary 'de Beer, T.A.P.' 3 primary 'Tauriello, G.' 4 primary 'Studer, G.' 5 primary 'Bordoli, L.' 6 primary 'Schwede, T.' 7 2 'Waterhouse, A.' 8 2 'Bertoni, M.' 9 2 'Bienert, S.' 10 2 'Studer, G.' 11 2 'Tauriello, G.' 12 2 'Gumienny, R.' 13 2 'Heer, F.T.' 14 2 'de Beer, T.A.P.' 15 2 'Rempfer, C.' 16 2 'Bordoli, L.' 17 2 'Lepore, R.' 18 2 'Schwede, T.' 19 3 'Studer, G.' 20 3 'Tauriello, G.' 21 3 'Bienert, S.' 22 3 'Biasini, M.' 23 3 'Johner, N.' 24 3 'Schwede, T.' 25 4 'Studer, G.' 26 4 'Rempfer, C.' 27 4 'Waterhouse, A.M.' 28 4 'Gumienny, R.' 29 4 'Haas, J.' 30 4 'Schwede, T.' 31 5 'Biasini, M.' 32 5 'Schmidt, T.' 33 5 'Bienert, S.' 34 5 'Mariani, V.' 35 5 'Studer, G.' 36 5 'Haas, J.' 37 5 'Johner, N.' 38 5 'Schenk, A.D.' 39 5 'Philippsen, A.' 40 5 'Schwede, T.' 41 6 'Camacho, C.' 42 6 'Coulouris, G.' 43 6 'Avagyan, V.' 44 6 'Ma, N.' 45 6 'Papadopoulos, J.' 46 6 'Bealer, K.' 47 6 'Madden, T.L.' 48 7 'Steinegger, M.' 49 7 'Meier, M.' 50 7 'Mirdita, M.' 51 7 'Vohringer, H.' 52 7 'Haunsberger, S.J.' 53 7 'Soding, J.' 54 # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location _software.citation_id 1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3 package https://swissmodel.expasy.org 2 2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library https://git.scicore.unibas.ch/schwede/ProMod3 3 3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1 library https://git.scicore.unibas.ch/schwede/QMEAN 4 4 OpenStructure 'data processing' 'Open-Source Computational Structural Biology Framework' 2.8.0 package https://openstructure.org/ 5 5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6 6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0 package https://github.com/soedinglab/hh-suite 7 # # loop_ _ma_software_group.ordinal_id _ma_software_group.group_id _ma_software_group.software_id _ma_software_group.parameter_group_id 1 1 5 . 2 2 1 . 3 2 4 . 4 2 5 . 5 2 6 . 6 3 1 . 7 3 4 . 8 4 1 . 9 4 2 . 10 4 4 . 11 5 3 . 12 6 1 . 13 6 3 . 14 6 4 . # # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bienert, S.' 1 'Waterhouse, A.' 2 'de Beer, T.A.P.' 3 'Tauriello, G.' 4 'Studer, G.' 5 'Bordoli, L.' 6 'Schwede, T.' 7 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight _chem_comp.ma_provenance ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core' ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core' ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core' ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core' CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core' GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core' GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core' GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core' HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core' ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core' MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core' PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core' PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core' SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core' THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core' TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core' TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core' VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core' # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man . 16918.284 1 . # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP CD20_HUMAN P11836 1 ;MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKE QTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP ; 'B-lymphocyte antigen CD20' # # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 130 1 130 # # loop_ _ma_target_ref_db_details.target_entity_id _ma_target_ref_db_details.db_name _ma_target_ref_db_details.db_name_other_details _ma_target_ref_db_details.db_code _ma_target_ref_db_details.db_accession _ma_target_ref_db_details.seq_db_isoform _ma_target_ref_db_details.seq_db_align_begin _ma_target_ref_db_details.seq_db_align_end _ma_target_ref_db_details.ncbi_taxonomy_id _ma_target_ref_db_details.organism_scientific _ma_target_ref_db_details.seq_db_sequence_version_date _ma_target_ref_db_details.seq_db_sequence_checksum 1 UNP . CD20_HUMAN P11836 P11836-2 1 130 9606 'Homo sapiens (Human)' 1989-10-01 7B38C8639E2D3744 # # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polypeptide(L) no no E ;MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKE QTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP ; ;MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKE QTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP ; # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET . 1 2 THR . 1 3 THR . 1 4 PRO . 1 5 ARG . 1 6 ASN . 1 7 SER . 1 8 VAL . 1 9 ASN . 1 10 GLY . 1 11 THR . 1 12 PHE . 1 13 PRO . 1 14 ALA . 1 15 GLU . 1 16 PRO . 1 17 MET . 1 18 LYS . 1 19 GLY . 1 20 PRO . 1 21 ILE . 1 22 ALA . 1 23 MET . 1 24 GLN . 1 25 SER . 1 26 GLY . 1 27 PRO . 1 28 LYS . 1 29 PRO . 1 30 LEU . 1 31 PHE . 1 32 ARG . 1 33 ARG . 1 34 MET . 1 35 SER . 1 36 SER . 1 37 LEU . 1 38 GLU . 1 39 LEU . 1 40 VAL . 1 41 ILE . 1 42 ALA . 1 43 GLY . 1 44 ILE . 1 45 VAL . 1 46 GLU . 1 47 ASN . 1 48 GLU . 1 49 TRP . 1 50 LYS . 1 51 ARG . 1 52 THR . 1 53 CYS . 1 54 SER . 1 55 ARG . 1 56 PRO . 1 57 LYS . 1 58 SER . 1 59 ASN . 1 60 ILE . 1 61 VAL . 1 62 LEU . 1 63 LEU . 1 64 SER . 1 65 ALA . 1 66 GLU . 1 67 GLU . 1 68 LYS . 1 69 LYS . 1 70 GLU . 1 71 GLN . 1 72 THR . 1 73 ILE . 1 74 GLU . 1 75 ILE . 1 76 LYS . 1 77 GLU . 1 78 GLU . 1 79 VAL . 1 80 VAL . 1 81 GLY . 1 82 LEU . 1 83 THR . 1 84 GLU . 1 85 THR . 1 86 SER . 1 87 SER . 1 88 GLN . 1 89 PRO . 1 90 LYS . 1 91 ASN . 1 92 GLU . 1 93 GLU . 1 94 ASP . 1 95 ILE . 1 96 GLU . 1 97 ILE . 1 98 ILE . 1 99 PRO . 1 100 ILE . 1 101 GLN . 1 102 GLU . 1 103 GLU . 1 104 GLU . 1 105 GLU . 1 106 GLU . 1 107 GLU . 1 108 THR . 1 109 GLU . 1 110 THR . 1 111 ASN . 1 112 PHE . 1 113 PRO . 1 114 GLU . 1 115 PRO . 1 116 PRO . 1 117 GLN . 1 118 ASP . 1 119 GLN . 1 120 GLU . 1 121 SER . 1 122 SER . 1 123 PRO . 1 124 ILE . 1 125 GLU . 1 126 ASN . 1 127 ASP . 1 128 SER . 1 129 SER . 1 130 PRO . # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 . # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 ? ? ? E . A 1 2 THR 2 ? ? ? E . A 1 3 THR 3 ? ? ? E . A 1 4 PRO 4 ? ? ? E . A 1 5 ARG 5 ? ? ? E . A 1 6 ASN 6 ? ? ? E . A 1 7 SER 7 ? ? ? E . A 1 8 VAL 8 ? ? ? E . A 1 9 ASN 9 ? ? ? E . A 1 10 GLY 10 ? ? ? E . A 1 11 THR 11 ? ? ? E . A 1 12 PHE 12 ? ? ? E . A 1 13 PRO 13 ? ? ? E . A 1 14 ALA 14 ? ? ? E . A 1 15 GLU 15 ? ? ? E . A 1 16 PRO 16 ? ? ? E . A 1 17 MET 17 ? ? ? E . A 1 18 LYS 18 ? ? ? E . A 1 19 GLY 19 ? ? ? E . A 1 20 PRO 20 ? ? ? E . A 1 21 ILE 21 ? ? ? E . A 1 22 ALA 22 ? ? ? E . A 1 23 MET 23 ? ? ? E . A 1 24 GLN 24 ? ? ? E . A 1 25 SER 25 ? ? ? E . A 1 26 GLY 26 ? ? ? E . A 1 27 PRO 27 ? ? ? E . A 1 28 LYS 28 ? ? ? E . A 1 29 PRO 29 ? ? ? E . A 1 30 LEU 30 ? ? ? E . A 1 31 PHE 31 ? ? ? E . A 1 32 ARG 32 ? ? ? E . A 1 33 ARG 33 ? ? ? E . A 1 34 MET 34 ? ? ? E . A 1 35 SER 35 ? ? ? E . A 1 36 SER 36 ? ? ? E . A 1 37 LEU 37 ? ? ? E . A 1 38 GLU 38 38 GLU GLU E . A 1 39 LEU 39 39 LEU LEU E . A 1 40 VAL 40 40 VAL VAL E . A 1 41 ILE 41 41 ILE ILE E . A 1 42 ALA 42 42 ALA ALA E . A 1 43 GLY 43 43 GLY GLY E . A 1 44 ILE 44 44 ILE ILE E . A 1 45 VAL 45 45 VAL VAL E . A 1 46 GLU 46 46 GLU GLU E . A 1 47 ASN 47 47 ASN ASN E . A 1 48 GLU 48 48 GLU GLU E . A 1 49 TRP 49 49 TRP TRP E . A 1 50 LYS 50 50 LYS LYS E . A 1 51 ARG 51 51 ARG ARG E . A 1 52 THR 52 52 THR THR E . A 1 53 CYS 53 ? ? ? E . A 1 54 SER 54 ? ? ? E . A 1 55 ARG 55 ? ? ? E . A 1 56 PRO 56 ? ? ? E . A 1 57 LYS 57 ? ? ? E . A 1 58 SER 58 ? ? ? E . A 1 59 ASN 59 ? ? ? E . A 1 60 ILE 60 ? ? ? E . A 1 61 VAL 61 ? ? ? E . A 1 62 LEU 62 ? ? ? E . A 1 63 LEU 63 ? ? ? E . A 1 64 SER 64 ? ? ? E . A 1 65 ALA 65 ? ? ? E . A 1 66 GLU 66 ? ? ? E . A 1 67 GLU 67 ? ? ? E . A 1 68 LYS 68 ? ? ? E . A 1 69 LYS 69 ? ? ? E . A 1 70 GLU 70 ? ? ? E . A 1 71 GLN 71 ? ? ? E . A 1 72 THR 72 ? ? ? E . A 1 73 ILE 73 ? ? ? E . A 1 74 GLU 74 ? ? ? E . A 1 75 ILE 75 ? ? ? E . A 1 76 LYS 76 ? ? ? E . A 1 77 GLU 77 ? ? ? E . A 1 78 GLU 78 ? ? ? E . A 1 79 VAL 79 ? ? ? E . A 1 80 VAL 80 ? ? ? E . A 1 81 GLY 81 ? ? ? E . A 1 82 LEU 82 ? ? ? E . A 1 83 THR 83 ? ? ? E . A 1 84 GLU 84 ? ? ? E . A 1 85 THR 85 ? ? ? E . A 1 86 SER 86 ? ? ? E . A 1 87 SER 87 ? ? ? E . A 1 88 GLN 88 ? ? ? E . A 1 89 PRO 89 ? ? ? E . A 1 90 LYS 90 ? ? ? E . A 1 91 ASN 91 ? ? ? E . A 1 92 GLU 92 ? ? ? E . A 1 93 GLU 93 ? ? ? E . A 1 94 ASP 94 ? ? ? E . A 1 95 ILE 95 ? ? ? E . A 1 96 GLU 96 ? ? ? E . A 1 97 ILE 97 ? ? ? E . A 1 98 ILE 98 ? ? ? E . A 1 99 PRO 99 ? ? ? E . A 1 100 ILE 100 ? ? ? E . A 1 101 GLN 101 ? ? ? E . A 1 102 GLU 102 ? ? ? E . A 1 103 GLU 103 ? ? ? E . A 1 104 GLU 104 ? ? ? E . A 1 105 GLU 105 ? ? ? E . A 1 106 GLU 106 ? ? ? E . A 1 107 GLU 107 ? ? ? E . A 1 108 THR 108 ? ? ? E . A 1 109 GLU 109 ? ? ? E . A 1 110 THR 110 ? ? ? E . A 1 111 ASN 111 ? ? ? E . A 1 112 PHE 112 ? ? ? E . A 1 113 PRO 113 ? ? ? E . A 1 114 GLU 114 ? ? ? E . A 1 115 PRO 115 ? ? ? E . A 1 116 PRO 116 ? ? ? E . A 1 117 GLN 117 ? ? ? E . A 1 118 ASP 118 ? ? ? E . A 1 119 GLN 119 ? ? ? E . A 1 120 GLU 120 ? ? ? E . A 1 121 SER 121 ? ? ? E . A 1 122 SER 122 ? ? ? E . A 1 123 PRO 123 ? ? ? E . A 1 124 ILE 124 ? ? ? E . A 1 125 GLU 125 ? ? ? E . A 1 126 ASN 126 ? ? ? E . A 1 127 ASP 127 ? ? ? E . A 1 128 SER 128 ? ? ? E . A 1 129 SER 129 ? ? ? E . A 1 130 PRO 130 ? ? ? E . # # loop_ _ma_data.id _ma_data.name _ma_data.content_type _ma_data.content_type_other_details 1 'B-lymphocyte antigen CD20 {PDB ID=8vgo, label_asym_id=E, auth_asym_id=I, SMTL ID=8vgo.1.E}' 'template structure' . 2 . target . 3 'Target-template alignment by BLAST to 8vgo, label_asym_id=E' 'target-template alignment' . 4 'model 1' 'model coordinates' . 5 SMTL 'reference database' . 6 PDB 'reference database' . 7 'Template search output' other 'Results of the sequence search' # # loop_ _ma_data_group.ordinal_id _ma_data_group.group_id _ma_data_group.data_id 1 1 2 2 1 5 3 1 6 4 2 7 5 3 2 6 3 1 7 3 3 8 4 1 9 4 3 10 5 4 # # loop_ _ma_data_ref_db.data_id _ma_data_ref_db.name _ma_data_ref_db.location_url _ma_data_ref_db.version _ma_data_ref_db.release_date 5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-14 6 PDB https://www.wwpdb.org . 2024-11-08 # # loop_ _ma_target_entity.entity_id _ma_target_entity.data_id _ma_target_entity.origin 1 2 'reference database' # # loop_ _ma_target_entity_instance.asym_id _ma_target_entity_instance.entity_id _ma_target_entity_instance.details A 1 . # # loop_ _ma_template_trans_matrix.id _ma_template_trans_matrix.rot_matrix[1][1] _ma_template_trans_matrix.rot_matrix[2][1] _ma_template_trans_matrix.rot_matrix[3][1] _ma_template_trans_matrix.rot_matrix[1][2] _ma_template_trans_matrix.rot_matrix[2][2] _ma_template_trans_matrix.rot_matrix[3][2] _ma_template_trans_matrix.rot_matrix[1][3] _ma_template_trans_matrix.rot_matrix[2][3] _ma_template_trans_matrix.rot_matrix[3][3] _ma_template_trans_matrix.tr_vector[1] _ma_template_trans_matrix.tr_vector[2] _ma_template_trans_matrix.tr_vector[3] 1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0 0 0 # # loop_ _ma_template_details.ordinal_id _ma_template_details.template_id _ma_template_details.template_origin _ma_template_details.template_entity_type _ma_template_details.template_trans_matrix_id _ma_template_details.template_data_id _ma_template_details.target_asym_id _ma_template_details.template_label_asym_id _ma_template_details.template_label_entity_id _ma_template_details.template_model_num _ma_template_details.template_auth_asym_id 1 1 'reference database' polymer 1 1 A E 3 1 I # # loop_ _ma_template_poly.template_id _ma_template_poly.seq_one_letter_code _ma_template_poly.seq_one_letter_code_can 1 ;MGSTQSFFMRESKTLGAVQIMNGLFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKN SRKCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNS PSTQYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTIEIKEEVV GLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSPGNSENLYFQGHHHHHHHH ; ;MGSTQSFFMRESKTLGAVQIMNGLFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKN SRKCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNS PSTQYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTIEIKEEVV GLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSPGNSENLYFQGHHHHHHHH ; # # loop_ _ma_template_poly_segment.id _ma_template_poly_segment.template_id _ma_template_poly_segment.residue_number_begin _ma_template_poly_segment.residue_number_end 1 1 168 260 # # loop_ _ma_template_ref_db_details.template_id _ma_template_ref_db_details.db_name _ma_template_ref_db_details.db_name_other_details _ma_template_ref_db_details.db_accession_code _ma_template_ref_db_details.db_version_date 1 PDB . 8vgo 2024-11-06 # # loop_ _ma_target_template_poly_mapping.id _ma_target_template_poly_mapping.template_segment_id _ma_target_template_poly_mapping.target_asym_id _ma_target_template_poly_mapping.target_seq_id_begin _ma_target_template_poly_mapping.target_seq_id_end 1 1 A 1 130 # # loop_ _ma_alignment_info.alignment_id _ma_alignment_info.data_id _ma_alignment_info.software_group_id _ma_alignment_info.alignment_length _ma_alignment_info.alignment_type _ma_alignment_info.alignment_mode 1 3 1 130 'target-template pairwise alignment' local # # loop_ _ma_alignment_details.ordinal_id _ma_alignment_details.alignment_id _ma_alignment_details.template_segment_id _ma_alignment_details.target_asym_id _ma_alignment_details.score_type _ma_alignment_details.score_type_other_details _ma_alignment_details.score_value _ma_alignment_details.percent_sequence_identity _ma_alignment_details.sequence_identity_denominator _ma_alignment_details.sequence_identity_denominator_other_details 1 1 1 A 'BLAST e-value' . 7.83e-22 100.000 'Number of aligned residue pairs (not including the gaps)' . # # loop_ _ma_alignment.ordinal_id _ma_alignment.alignment_id _ma_alignment.target_template_flag _ma_alignment.sequence 1 1 1 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP 2 1 2 -------------------------------------ELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP # # loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.step_name _ma_protocol_step.details _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2 1 2 2 1 2 'template selection' 'template selection' 'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4 3 1 3 modeling 'homology modeling' 'SWISS-MODEL auto-model mode using ProMod3 on 8vgo.1' 4 3 5 # # loop_ _ma_model_list.ordinal_id _ma_model_list.model_id _ma_model_list.model_group_id _ma_model_list.model_name _ma_model_list.model_group_name _ma_model_list.data_id _ma_model_list.model_type _ma_model_list.model_type_other_details 1 1 1 'model 1' . 4 'Homology model' . # # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.auth_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.label_entity_id _atom_site.auth_asym_id _atom_site.auth_comp_id _atom_site.B_iso_or_equiv _atom_site.pdbx_PDB_model_num ATOM 1 N N . GLU 38 38 ? A 197.985 179.704 215.025 1 1 E GLU 0.580 1 ATOM 2 C CA . GLU 38 38 ? A 199.257 179.161 215.604 1 1 E GLU 0.580 1 ATOM 3 C C . GLU 38 38 ? A 199.603 179.904 216.889 1 1 E GLU 0.580 1 ATOM 4 O O . GLU 38 38 ? A 199.521 179.298 217.945 1 1 E GLU 0.580 1 ATOM 5 C CB . GLU 38 38 ? A 200.334 179.098 214.486 1 1 E GLU 0.580 1 ATOM 6 C CG . GLU 38 38 ? A 201.480 178.093 214.778 1 1 E GLU 0.580 1 ATOM 7 C CD . GLU 38 38 ? A 202.404 178.601 215.877 1 1 E GLU 0.580 1 ATOM 8 O OE1 . GLU 38 38 ? A 202.554 179.846 215.962 1 1 E GLU 0.580 1 ATOM 9 O OE2 . GLU 38 38 ? A 202.886 177.757 216.666 1 1 E GLU 0.580 1 ATOM 10 N N . LEU 39 39 ? A 199.826 181.248 216.854 1 1 E LEU 0.590 1 ATOM 11 C CA . LEU 39 39 ? A 200.250 182.062 217.992 1 1 E LEU 0.590 1 ATOM 12 C C . LEU 39 39 ? A 199.433 181.886 219.266 1 1 E LEU 0.590 1 ATOM 13 O O . LEU 39 39 ? A 199.961 181.676 220.359 1 1 E LEU 0.590 1 ATOM 14 C CB . LEU 39 39 ? A 200.186 183.564 217.573 1 1 E LEU 0.590 1 ATOM 15 C CG . LEU 39 39 ? A 201.529 184.144 217.079 1 1 E LEU 0.590 1 ATOM 16 C CD1 . LEU 39 39 ? A 202.122 183.410 215.860 1 1 E LEU 0.590 1 ATOM 17 C CD2 . LEU 39 39 ? A 201.386 185.649 216.788 1 1 E LEU 0.590 1 ATOM 18 N N . VAL 40 40 ? A 198.096 181.936 219.147 1 1 E VAL 0.630 1 ATOM 19 C CA . VAL 40 40 ? A 197.185 181.749 220.260 1 1 E VAL 0.630 1 ATOM 20 C C . VAL 40 40 ? A 197.168 180.335 220.830 1 1 E VAL 0.630 1 ATOM 21 O O . VAL 40 40 ? A 197.154 180.146 222.045 1 1 E VAL 0.630 1 ATOM 22 C CB . VAL 40 40 ? A 195.778 182.250 219.931 1 1 E VAL 0.630 1 ATOM 23 C CG1 . VAL 40 40 ? A 195.873 183.747 219.563 1 1 E VAL 0.630 1 ATOM 24 C CG2 . VAL 40 40 ? A 195.068 181.447 218.814 1 1 E VAL 0.630 1 ATOM 25 N N . ILE 41 41 ? A 197.209 179.298 219.964 1 1 E ILE 0.650 1 ATOM 26 C CA . ILE 41 41 ? A 197.264 177.889 220.332 1 1 E ILE 0.650 1 ATOM 27 C C . ILE 41 41 ? A 198.604 177.558 220.976 1 1 E ILE 0.650 1 ATOM 28 O O . ILE 41 41 ? A 198.647 176.856 221.982 1 1 E ILE 0.650 1 ATOM 29 C CB . ILE 41 41 ? A 196.951 176.946 219.165 1 1 E ILE 0.650 1 ATOM 30 C CG1 . ILE 41 41 ? A 195.569 177.275 218.538 1 1 E ILE 0.650 1 ATOM 31 C CG2 . ILE 41 41 ? A 196.967 175.474 219.659 1 1 E ILE 0.650 1 ATOM 32 C CD1 . ILE 41 41 ? A 195.394 176.703 217.124 1 1 E ILE 0.650 1 ATOM 33 N N . ALA 42 42 ? A 199.732 178.113 220.470 1 1 E ALA 0.700 1 ATOM 34 C CA . ALA 42 42 ? A 201.047 178.033 221.077 1 1 E ALA 0.700 1 ATOM 35 C C . ALA 42 42 ? A 201.039 178.613 222.485 1 1 E ALA 0.700 1 ATOM 36 O O . ALA 42 42 ? A 201.548 177.991 223.416 1 1 E ALA 0.700 1 ATOM 37 C CB . ALA 42 42 ? A 202.092 178.770 220.208 1 1 E ALA 0.700 1 ATOM 38 N N . GLY 43 43 ? A 200.336 179.744 222.712 1 1 E GLY 0.670 1 ATOM 39 C CA . GLY 43 43 ? A 200.193 180.374 224.027 1 1 E GLY 0.670 1 ATOM 40 C C . GLY 43 43 ? A 199.305 179.625 224.999 1 1 E GLY 0.670 1 ATOM 41 O O . GLY 43 43 ? A 199.154 180.019 226.155 1 1 E GLY 0.670 1 ATOM 42 N N . ILE 44 44 ? A 198.699 178.512 224.549 1 1 E ILE 0.690 1 ATOM 43 C CA . ILE 44 44 ? A 197.939 177.578 225.359 1 1 E ILE 0.690 1 ATOM 44 C C . ILE 44 44 ? A 198.700 176.271 225.493 1 1 E ILE 0.690 1 ATOM 45 O O . ILE 44 44 ? A 198.999 175.844 226.603 1 1 E ILE 0.690 1 ATOM 46 C CB . ILE 44 44 ? A 196.559 177.331 224.759 1 1 E ILE 0.690 1 ATOM 47 C CG1 . ILE 44 44 ? A 195.753 178.651 224.802 1 1 E ILE 0.690 1 ATOM 48 C CG2 . ILE 44 44 ? A 195.807 176.191 225.498 1 1 E ILE 0.690 1 ATOM 49 C CD1 . ILE 44 44 ? A 194.551 178.652 223.851 1 1 E ILE 0.690 1 ATOM 50 N N . VAL 45 45 ? A 199.055 175.600 224.371 1 1 E VAL 0.700 1 ATOM 51 C CA . VAL 45 45 ? A 199.632 174.256 224.326 1 1 E VAL 0.700 1 ATOM 52 C C . VAL 45 45 ? A 201.021 174.169 224.936 1 1 E VAL 0.700 1 ATOM 53 O O . VAL 45 45 ? A 201.374 173.163 225.555 1 1 E VAL 0.700 1 ATOM 54 C CB . VAL 45 45 ? A 199.553 173.624 222.936 1 1 E VAL 0.700 1 ATOM 55 C CG1 . VAL 45 45 ? A 200.139 172.194 222.926 1 1 E VAL 0.700 1 ATOM 56 C CG2 . VAL 45 45 ? A 198.064 173.540 222.541 1 1 E VAL 0.700 1 ATOM 57 N N . GLU 46 46 ? A 201.807 175.265 224.860 1 1 E GLU 0.710 1 ATOM 58 C CA . GLU 46 46 ? A 203.068 175.435 225.570 1 1 E GLU 0.710 1 ATOM 59 C C . GLU 46 46 ? A 202.857 175.311 227.077 1 1 E GLU 0.710 1 ATOM 60 O O . GLU 46 46 ? A 203.611 174.657 227.799 1 1 E GLU 0.710 1 ATOM 61 C CB . GLU 46 46 ? A 203.676 176.813 225.187 1 1 E GLU 0.710 1 ATOM 62 C CG . GLU 46 46 ? A 204.920 177.290 225.984 1 1 E GLU 0.710 1 ATOM 63 C CD . GLU 46 46 ? A 206.135 176.373 226.025 1 1 E GLU 0.710 1 ATOM 64 O OE1 . GLU 46 46 ? A 206.134 175.221 225.533 1 1 E GLU 0.710 1 ATOM 65 O OE2 . GLU 46 46 ? A 207.121 176.784 226.697 1 1 E GLU 0.710 1 ATOM 66 N N . ASN 47 47 ? A 201.743 175.871 227.589 1 1 E ASN 0.710 1 ATOM 67 C CA . ASN 47 47 ? A 201.352 175.717 228.973 1 1 E ASN 0.710 1 ATOM 68 C C . ASN 47 47 ? A 200.732 174.351 229.243 1 1 E ASN 0.710 1 ATOM 69 O O . ASN 47 47 ? A 200.897 173.834 230.345 1 1 E ASN 0.710 1 ATOM 70 C CB . ASN 47 47 ? A 200.348 176.798 229.443 1 1 E ASN 0.710 1 ATOM 71 C CG . ASN 47 47 ? A 200.944 178.190 229.322 1 1 E ASN 0.710 1 ATOM 72 O OD1 . ASN 47 47 ? A 202.162 178.384 229.222 1 1 E ASN 0.710 1 ATOM 73 N ND2 . ASN 47 47 ? A 200.077 179.220 229.362 1 1 E ASN 0.710 1 ATOM 74 N N . GLU 48 48 ? A 199.980 173.744 228.284 1 1 E GLU 0.690 1 ATOM 75 C CA . GLU 48 48 ? A 199.288 172.464 228.463 1 1 E GLU 0.690 1 ATOM 76 C C . GLU 48 48 ? A 200.224 171.342 228.827 1 1 E GLU 0.690 1 ATOM 77 O O . GLU 48 48 ? A 200.064 170.764 229.896 1 1 E GLU 0.690 1 ATOM 78 C CB . GLU 48 48 ? A 198.473 171.995 227.215 1 1 E GLU 0.690 1 ATOM 79 C CG . GLU 48 48 ? A 197.261 172.885 226.833 1 1 E GLU 0.690 1 ATOM 80 C CD . GLU 48 48 ? A 196.020 172.677 227.688 1 1 E GLU 0.690 1 ATOM 81 O OE1 . GLU 48 48 ? A 196.138 172.890 228.926 1 1 E GLU 0.690 1 ATOM 82 O OE2 . GLU 48 48 ? A 194.946 172.382 227.122 1 1 E GLU 0.690 1 ATOM 83 N N . TRP 49 49 ? A 201.272 171.101 228.016 1 1 E TRP 0.590 1 ATOM 84 C CA . TRP 49 49 ? A 202.223 170.017 228.236 1 1 E TRP 0.590 1 ATOM 85 C C . TRP 49 49 ? A 203.306 170.368 229.222 1 1 E TRP 0.590 1 ATOM 86 O O . TRP 49 49 ? A 204.087 169.506 229.615 1 1 E TRP 0.590 1 ATOM 87 C CB . TRP 49 49 ? A 202.939 169.581 226.936 1 1 E TRP 0.590 1 ATOM 88 C CG . TRP 49 49 ? A 202.023 168.949 225.907 1 1 E TRP 0.590 1 ATOM 89 C CD1 . TRP 49 49 ? A 201.436 169.560 224.842 1 1 E TRP 0.590 1 ATOM 90 C CD2 . TRP 49 49 ? A 201.628 167.571 225.870 1 1 E TRP 0.590 1 ATOM 91 N NE1 . TRP 49 49 ? A 200.696 168.649 224.125 1 1 E TRP 0.590 1 ATOM 92 C CE2 . TRP 49 49 ? A 200.795 167.416 224.724 1 1 E TRP 0.590 1 ATOM 93 C CE3 . TRP 49 49 ? A 201.905 166.490 226.696 1 1 E TRP 0.590 1 ATOM 94 C CZ2 . TRP 49 49 ? A 200.261 166.178 224.408 1 1 E TRP 0.590 1 ATOM 95 C CZ3 . TRP 49 49 ? A 201.366 165.241 226.367 1 1 E TRP 0.590 1 ATOM 96 C CH2 . TRP 49 49 ? A 200.555 165.082 225.232 1 1 E TRP 0.590 1 ATOM 97 N N . LYS 50 50 ? A 203.424 171.614 229.691 1 1 E LYS 0.680 1 ATOM 98 C CA . LYS 50 50 ? A 204.205 171.902 230.874 1 1 E LYS 0.680 1 ATOM 99 C C . LYS 50 50 ? A 203.410 171.758 232.155 1 1 E LYS 0.680 1 ATOM 100 O O . LYS 50 50 ? A 203.985 171.664 233.239 1 1 E LYS 0.680 1 ATOM 101 C CB . LYS 50 50 ? A 204.803 173.310 230.800 1 1 E LYS 0.680 1 ATOM 102 C CG . LYS 50 50 ? A 205.939 173.334 229.776 1 1 E LYS 0.680 1 ATOM 103 C CD . LYS 50 50 ? A 206.684 174.669 229.822 1 1 E LYS 0.680 1 ATOM 104 C CE . LYS 50 50 ? A 208.037 174.657 229.110 1 1 E LYS 0.680 1 ATOM 105 N NZ . LYS 50 50 ? A 207.843 174.472 227.665 1 1 E LYS 0.680 1 ATOM 106 N N . ARG 51 51 ? A 202.071 171.699 232.064 1 1 E ARG 0.830 1 ATOM 107 C CA . ARG 51 51 ? A 201.213 171.337 233.166 1 1 E ARG 0.830 1 ATOM 108 C C . ARG 51 51 ? A 200.920 169.832 233.163 1 1 E ARG 0.830 1 ATOM 109 O O . ARG 51 51 ? A 200.254 169.366 234.090 1 1 E ARG 0.830 1 ATOM 110 C CB . ARG 51 51 ? A 199.862 172.111 233.050 1 1 E ARG 0.830 1 ATOM 111 C CG . ARG 51 51 ? A 199.921 173.566 233.577 1 1 E ARG 0.830 1 ATOM 112 C CD . ARG 51 51 ? A 198.591 174.346 233.564 1 1 E ARG 0.830 1 ATOM 113 N NE . ARG 51 51 ? A 198.366 174.914 232.185 1 1 E ARG 0.830 1 ATOM 114 C CZ . ARG 51 51 ? A 197.562 174.381 231.266 1 1 E ARG 0.830 1 ATOM 115 N NH1 . ARG 51 51 ? A 196.950 173.206 231.411 1 1 E ARG 0.830 1 ATOM 116 N NH2 . ARG 51 51 ? A 197.380 174.922 230.061 1 1 E ARG 0.830 1 ATOM 117 N N . THR 52 52 ? A 201.372 169.043 232.156 1 1 E THR 0.860 1 ATOM 118 C CA . THR 52 52 ? A 201.000 167.632 232.005 1 1 E THR 0.860 1 ATOM 119 C C . THR 52 52 ? A 202.146 166.695 231.538 1 1 E THR 0.860 1 ATOM 120 O O . THR 52 52 ? A 203.332 167.091 231.580 1 1 E THR 0.860 1 ATOM 121 C CB . THR 52 52 ? A 199.776 167.367 231.107 1 1 E THR 0.860 1 ATOM 122 O OG1 . THR 52 52 ? A 199.858 167.898 229.793 1 1 E THR 0.860 1 ATOM 123 C CG2 . THR 52 52 ? A 198.537 168.009 231.738 1 1 E THR 0.860 1 ATOM 124 O OXT . THR 52 52 ? A 201.835 165.518 231.206 1 1 E THR 0.860 1 # # loop_ _atom_type.symbol C N O # # loop_ _ma_qa_metric.id _ma_qa_metric.name _ma_qa_metric.description _ma_qa_metric.type _ma_qa_metric.mode _ma_qa_metric.type_other_details _ma_qa_metric.software_group_id 1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' local . 5 2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' global . 5 3 GMQE 'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.' 'normalized score' global . 6 # # loop_ _ma_qa_metric_global.ordinal_id _ma_qa_metric_global.model_id _ma_qa_metric_global.metric_id _ma_qa_metric_global.metric_value 1 1 2 0.685 2 1 3 0.197 # # loop_ _ma_qa_metric_local.ordinal_id _ma_qa_metric_local.model_id _ma_qa_metric_local.label_asym_id _ma_qa_metric_local.label_seq_id _ma_qa_metric_local.label_comp_id _ma_qa_metric_local.metric_id _ma_qa_metric_local.metric_value 1 1 A 38 GLU 1 0.580 2 1 A 39 LEU 1 0.590 3 1 A 40 VAL 1 0.630 4 1 A 41 ILE 1 0.650 5 1 A 42 ALA 1 0.700 6 1 A 43 GLY 1 0.670 7 1 A 44 ILE 1 0.690 8 1 A 45 VAL 1 0.700 9 1 A 46 GLU 1 0.710 10 1 A 47 ASN 1 0.710 11 1 A 48 GLU 1 0.690 12 1 A 49 TRP 1 0.590 13 1 A 50 LYS 1 0.680 14 1 A 51 ARG 1 0.830 15 1 A 52 THR 1 0.860 # # loop_ _pdbx_data_usage.id _pdbx_data_usage.type _pdbx_data_usage.details _pdbx_data_usage.url 1 license ;This SWISS-MODEL protein model is copyright. It is produced by the SWISS-MODEL server, developed by the Computational Structural Biology Group at the SIB Swiss Institute of Bioinformatics at the Biozentrum, University of Basel (https://swissmodel.expasy.org). This model is licensed under the CC BY-SA 4.0 Creative Commons Attribution-ShareAlike 4.0 International License (https://creativecommons.org/licenses/by-sa/4.0/legalcode), i.e. you can copy and redistribute the model in any medium or format, transform and build upon the model for any purpose, even commercially, under the following terms: Attribution - You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. When you publish, patent or distribute results that were fully or partially based on the model, please cite the corresponding papers mentioned under JRNL. ShareAlike - If you remix, transform, or build upon the material, you must distribute your contributions under the same license as the original. No additional restrictions - you may not apply legal terms or technological measures that legally restrict others from doing anything the license permits. Find a human-readable summary of (and not a substitute for) the CC BY-SA 4.0 license at this link: https://creativecommons.org/licenses/by-sa/4.0/ ; https://creativecommons.org/licenses/by-sa/4.0/legalcode 2 disclaimer ;The SWISS-MODEL SERVER produces theoretical models for proteins. The results of any theoretical modelling procedure is NON-EXPERIMENTAL and MUST be considered with care. These models may contain significant errors. This is especially true for automated modeling since there is no human intervention during model building. Please read the header section and the logfile carefully to know what templates and alignments were used during the model building process. All information by the SWISS-MODEL SERVER is provided "AS-IS", without any warranty, expressed or implied. ; https://swissmodel.expasy.org/docs/terms_of_use#disclaimer #