data_SMR-c7c95da56dd0a07918ecc5868db080a7_1
_entry.id SMR-c7c95da56dd0a07918ecc5868db080a7_1
_struct.entry_id SMR-c7c95da56dd0a07918ecc5868db080a7_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - A0A2I3TJ74/ A0A2I3TJ74_PANTR, Decorin
  - A0A2R9BU55/ A0A2R9BU55_PANPA, Decorin
  - P07585/ PGS2_HUMAN, Decorin

Estimated model accuracy of this model is 0.203, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries A0A2I3TJ74, A0A2R9BU55, P07585'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 5 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 9604.756 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP A0A2I3TJ74_PANTR A0A2I3TJ74 1
;MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDL
GCLPS
;
Decorin
2 1 UNP A0A2R9BU55_PANPA A0A2R9BU55 1
;MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDL
GCLPS
;
Decorin
3 1 UNP PGS2_HUMAN P07585 1
;MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDL
GCLPS
;
Decorin
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 75 1 75
2 2 1 75 1 75
3 3 1 75 1 75
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . A0A2I3TJ74_PANTR A0A2I3TJ74 . 1 75 9598 'Pan troglodytes (Chimpanzee)'
2018-02-28 781856DC9E377479
1 UNP . A0A2R9BU55_PANPA A0A2R9BU55 . 1 75 9597
'Pan paniscus (Pygmy chimpanzee) (Bonobo)' 2018-06-20 781856DC9E377479
1 UNP . PGS2_HUMAN P07585 P07585-2 1 75 9606 'Homo sapiens (Human)' 1988-04-01
781856DC9E377479
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no B
;MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDL
GCLPS
;

;MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDL
GCLPS
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 LYS .
1 3 ALA .
1 4 THR .
1 5 ILE .
1 6 ILE .
1 7 LEU .
1 8 LEU .
1 9 LEU .
1 10 LEU .
1 11 ALA .
1 12 GLN .
1 13 VAL .
1 14 SER .
1 15 TRP .
1 16 ALA .
1 17 GLY .
1 18 PRO .
1 19 PHE .
1 20 GLN .
1 21 GLN .
1 22 ARG .
1 23 GLY .
1 24 LEU .
1 25 PHE .
1 26 ASP .
1 27 PHE .
1 28 MET .
1 29 LEU .
1 30 GLU .
1 31 ASP .
1 32 GLU .
1 33 ALA .
1 34 SER .
1 35 GLY .
1 36 ILE .
1 37 GLY .
1 38 PRO .
1 39 GLU .
1 40 VAL .
1 41 PRO .
1 42 ASP .
1 43 ASP .
1 44 ARG .
1 45 ASP .
1 46 PHE .
1 47 GLU .
1 48 PRO .
1 49 SER .
1 50 LEU .
1 51 GLY .
1 52 PRO .
1 53 VAL .
1 54 CYS .
1 55 PRO .
1 56 PHE .
1 57 ARG .
1 58 CYS .
1 59 GLN .
1 60 CYS .
1 61 HIS .
1 62 LEU .
1 63 ARG .
1 64 VAL .
1 65 VAL .
1 66 GLN .
1 67 CYS .
1 68 SER .
1 69 ASP .
1 70 LEU .
1 71 GLY .
1 72 CYS .
1 73 LEU .
1 74 PRO .
1 75 SER .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? B .
A 1 2 LYS 2 ? ? ? B .
A 1 3 ALA 3 ? ? ? B .
A 1 4 THR 4 ? ? ? B .
A 1 5 ILE 5 ? ? ? B .
A 1 6 ILE 6 ? ? ? B .
A 1 7 LEU 7 ? ? ? B .
A 1 8 LEU 8 ? ? ? B .
A 1 9 LEU 9 ? ? ? B .
A 1 10 LEU 10 ? ? ? B .
A 1 11 ALA 11 ? ? ? B .
A 1 12 GLN 12 ? ? ? B .
A 1 13 VAL 13 ? ? ? B .
A 1 14 SER 14 ? ? ? B .
A 1 15 TRP 15 ? ? ? B .
A 1 16 ALA 16 ? ? ? B .
A 1 17 GLY 17 ? ? ? B .
A 1 18 PRO 18 ? ? ? B .
A 1 19 PHE 19 ? ? ? B .
A 1 20 GLN 20 ? ? ? B .
A 1 21 GLN 21 ? ? ? B .
A 1 22 ARG 22 ? ? ? B .
A 1 23 GLY 23 ? ? ? B .
A 1 24 LEU 24 ? ? ? B .
A 1 25 PHE 25 ? ? ? B .
A 1 26 ASP 26 ? ? ? B .
A 1 27 PHE 27 ? ? ? B .
A 1 28 MET 28 ? ? ? B .
A 1 29 LEU 29 ? ? ? B .
A 1 30 GLU 30 ? ? ? B .
A 1 31 ASP 31 ? ? ? B .
A 1 32 GLU 32 ? ? ? B .
A 1 33 ALA 33 ? ? ? B .
A 1 34 SER 34 ? ? ? B .
A 1 35 GLY 35 ? ? ? B .
A 1 36 ILE 36 ? ? ? B .
A 1 37 GLY 37 ? ? ? B .
A 1 38 PRO 38 ? ? ? B .
A 1 39 GLU 39 ? ? ? B .
A 1 40 VAL 40 ? ? ? B .
A 1 41 PRO 41 ? ? ? B .
A 1 42 ASP 42 ? ? ? B .
A 1 43 ASP 43 ? ? ? B .
A 1 44 ARG 44 ? ? ? B .
A 1 45 ASP 45 ? ? ? B .
A 1 46 PHE 46 ? ? ? B .
A 1 47 GLU 47 ? ? ? B .
A 1 48 PRO 48 ? ? ? B .
A 1 49 SER 49 ? ? ? B .
A 1 50 LEU 50 ? ? ? B .
A 1 51 GLY 51 51 GLY GLY B .
A 1 52 PRO 52 52 PRO PRO B .
A 1 53 VAL 53 53 VAL VAL B .
A 1 54 CYS 54 54 CYS CYS B .
A 1 55 PRO 55 55 PRO PRO B .
A 1 56 PHE 56 56 PHE PHE B .
A 1 57 ARG 57 57 ARG ARG B .
A 1 58 CYS 58 58 CYS CYS B .
A 1 59 GLN 59 59 GLN GLN B .
A 1 60 CYS 60 60 CYS CYS B .
A 1 61 HIS 61 61 HIS HIS B .
A 1 62 LEU 62 62 LEU LEU B .
A 1 63 ARG 63 63 ARG ARG B .
A 1 64 VAL 64 64 VAL VAL B .
A 1 65 VAL 65 65 VAL VAL B .
A 1 66 GLN 66 66 GLN GLN B .
A 1 67 CYS 67 67 CYS CYS B .
A 1 68 SER 68 68 SER SER B .
A 1 69 ASP 69 69 ASP ASP B .
A 1 70 LEU 70 70 LEU LEU B .
A 1 71 GLY 71 71 GLY GLY B .
A 1 72 CYS 72 ? ? ? B .
A 1 73 LEU 73 ? ? ? B .
A 1 74 PRO 74 ? ? ? B .
A 1 75 SER 75 ? ? ? B .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1 'Decorin {PDB ID=1xcd, label_asym_id=A, auth_asym_id=A, SMTL ID=1xcd.1.B}'
'template structure' .
2 . target .
3 'Target-template alignment by BLAST to 1xcd, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-14
6 PDB https://www.wwpdb.org . 2024-11-08
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1
;DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG
DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV
FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA
SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS
NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY
;

;DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG
DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV
FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA
SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS
NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY
;

#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 1 42
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 1xcd 2024-10-09
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 75
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 77 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'BLAST e-value' . 1.83e-16 82.500
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPE--VPDDRDFEPSLGPVCPFRCQCHLRVVQCSDLGCLPS
2 1 2
------------------------------DEASGIGPEEHFPEVPEIEP-MGPVCPFRCQCHLRVVQCSDLG----
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 1xcd.1, oligomeric state (monomer) as predicted'
4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY 51 51 ? A 14.667 -0.480 54.010 1 1 B GLY 0.520 1
ATOM 2 C CA . GLY 51 51 ? A 13.181 -0.251 54.144 1 1 B GLY 0.520 1
ATOM 3 C C . GLY 51 51 ? A 12.716 0.757 53.125 1 1 B GLY 0.520 1
ATOM 4 O O . GLY 51 51 ? A 13.159 1.892 53.256 1 1 B GLY 0.520 1
ATOM 5 N N . PRO 52 52 ? A 11.929 0.457 52.101 1 1 B PRO 0.500 1
ATOM 6 C CA . PRO 52 52 ? A 11.453 1.458 51.148 1 1 B PRO 0.500 1
ATOM 7 C C . PRO 52 52 ? A 10.336 2.298 51.753 1 1 B PRO 0.500 1
ATOM 8 O O . PRO 52 52 ? A 9.576 1.790 52.578 1 1 B PRO 0.500 1
ATOM 9 C CB . PRO 52 52 ? A 10.956 0.601 49.974 1 1 B PRO 0.500 1
ATOM 10 C CG . PRO 52 52 ? A 10.406 -0.651 50.657 1 1 B PRO 0.500 1
ATOM 11 C CD . PRO 52 52 ? A 11.396 -0.876 51.801 1 1 B PRO 0.500 1
ATOM 12 N N . VAL 53 53 ? A 10.234 3.594 51.394 1 1 B VAL 0.810 1
ATOM 13 C CA . VAL 53 53 ? A 9.220 4.471 51.945 1 1 B VAL 0.810 1
ATOM 14 C C . VAL 53 53 ? A 8.382 5.037 50.823 1 1 B VAL 0.810 1
ATOM 15 O O . VAL 53 53 ? A 8.857 5.271 49.714 1 1 B VAL 0.810 1
ATOM 16 C CB . VAL 53 53 ? A 9.776 5.589 52.833 1 1 B VAL 0.810 1
ATOM 17 C CG1 . VAL 53 53 ? A 10.555 4.931 53.986 1 1 B VAL 0.810 1
ATOM 18 C CG2 . VAL 53 53 ? A 10.662 6.590 52.063 1 1 B VAL 0.810 1
ATOM 19 N N . CYS 54 54 ? A 7.081 5.263 51.082 1 1 B CYS 0.890 1
ATOM 20 C CA . CYS 54 54 ? A 6.221 6.001 50.181 1 1 B CYS 0.890 1
ATOM 21 C C . CYS 54 54 ? A 6.280 7.450 50.671 1 1 B CYS 0.890 1
ATOM 22 O O . CYS 54 54 ? A 6.034 7.645 51.864 1 1 B CYS 0.890 1
ATOM 23 C CB . CYS 54 54 ? A 4.771 5.453 50.230 1 1 B CYS 0.890 1
ATOM 24 S SG . CYS 54 54 ? A 3.737 6.054 48.864 1 1 B CYS 0.890 1
ATOM 25 N N . PRO 55 55 ? A 6.643 8.488 49.911 1 1 B PRO 0.880 1
ATOM 26 C CA . PRO 55 55 ? A 6.662 9.869 50.398 1 1 B PRO 0.880 1
ATOM 27 C C . PRO 55 55 ? A 5.320 10.357 50.915 1 1 B PRO 0.880 1
ATOM 28 O O . PRO 55 55 ? A 4.288 9.940 50.393 1 1 B PRO 0.880 1
ATOM 29 C CB . PRO 55 55 ? A 7.114 10.699 49.185 1 1 B PRO 0.880 1
ATOM 30 C CG . PRO 55 55 ? A 7.817 9.694 48.270 1 1 B PRO 0.880 1
ATOM 31 C CD . PRO 55 55 ? A 7.034 8.404 48.506 1 1 B PRO 0.880 1
ATOM 32 N N . PHE 56 56 ? A 5.291 11.257 51.921 1 1 B PHE 0.780 1
ATOM 33 C CA . PHE 56 56 ? A 4.047 11.768 52.478 1 1 B PHE 0.780 1
ATOM 34 C C . PHE 56 56 ? A 3.154 12.450 51.433 1 1 B PHE 0.780 1
ATOM 35 O O . PHE 56 56 ? A 3.569 13.414 50.782 1 1 B PHE 0.780 1
ATOM 36 C CB . PHE 56 56 ? A 4.335 12.758 53.633 1 1 B PHE 0.780 1
ATOM 37 C CG . PHE 56 56 ? A 3.136 12.965 54.518 1 1 B PHE 0.780 1
ATOM 38 C CD1 . PHE 56 56 ? A 2.397 14.160 54.492 1 1 B PHE 0.780 1
ATOM 39 C CD2 . PHE 56 56 ? A 2.761 11.953 55.412 1 1 B PHE 0.780 1
ATOM 40 C CE1 . PHE 56 56 ? A 1.305 14.338 55.352 1 1 B PHE 0.780 1
ATOM 41 C CE2 . PHE 56 56 ? A 1.678 12.132 56.278 1 1 B PHE 0.780 1
ATOM 42 C CZ . PHE 56 56 ? A 0.951 13.326 56.252 1 1 B PHE 0.780 1
ATOM 43 N N . ARG 57 57 ? A 1.912 11.934 51.281 1 1 B ARG 0.700 1
ATOM 44 C CA . ARG 57 57 ? A 0.897 12.316 50.304 1 1 B ARG 0.700 1
ATOM 45 C C . ARG 57 57 ? A 0.929 11.489 49.033 1 1 B ARG 0.700 1
ATOM 46 O O . ARG 57 57 ? A -0.075 11.406 48.330 1 1 B ARG 0.700 1
ATOM 47 C CB . ARG 57 57 ? A 0.820 13.815 49.913 1 1 B ARG 0.700 1
ATOM 48 C CG . ARG 57 57 ? A 0.637 14.777 51.098 1 1 B ARG 0.700 1
ATOM 49 C CD . ARG 57 57 ? A 0.941 16.242 50.769 1 1 B ARG 0.700 1
ATOM 50 N NE . ARG 57 57 ? A 2.413 16.327 50.473 1 1 B ARG 0.700 1
ATOM 51 C CZ . ARG 57 57 ? A 2.997 17.382 49.886 1 1 B ARG 0.700 1
ATOM 52 N NH1 . ARG 57 57 ? A 2.322 18.490 49.605 1 1 B ARG 0.700 1
ATOM 53 N NH2 . ARG 57 57 ? A 4.259 17.328 49.467 1 1 B ARG 0.700 1
ATOM 54 N N . CYS 58 58 ? A 2.056 10.834 48.696 1 1 B CYS 0.820 1
ATOM 55 C CA . CYS 58 58 ? A 2.095 9.956 47.543 1 1 B CYS 0.820 1
ATOM 56 C C . CYS 58 58 ? A 1.323 8.684 47.798 1 1 B CYS 0.820 1
ATOM 57 O O . CYS 58 58 ? A 1.109 8.260 48.934 1 1 B CYS 0.820 1
ATOM 58 C CB . CYS 58 58 ? A 3.508 9.566 47.059 1 1 B CYS 0.820 1
ATOM 59 S SG . CYS 58 58 ? A 4.532 10.986 46.584 1 1 B CYS 0.820 1
ATOM 60 N N . GLN 59 59 ? A 0.871 8.041 46.719 1 1 B GLN 0.840 1
ATOM 61 C CA . GLN 59 59 ? A 0.172 6.788 46.814 1 1 B GLN 0.840 1
ATOM 62 C C . GLN 59 59 ? A 1.047 5.735 46.175 1 1 B GLN 0.840 1
ATOM 63 O O . GLN 59 59 ? A 1.482 5.875 45.033 1 1 B GLN 0.840 1
ATOM 64 C CB . GLN 59 59 ? A -1.222 6.820 46.143 1 1 B GLN 0.840 1
ATOM 65 C CG . GLN 59 59 ? A -2.115 8.007 46.589 1 1 B GLN 0.840 1
ATOM 66 C CD . GLN 59 59 ? A -1.974 9.216 45.655 1 1 B GLN 0.840 1
ATOM 67 O OE1 . GLN 59 59 ? A -2.432 9.149 44.513 1 1 B GLN 0.840 1
ATOM 68 N NE2 . GLN 59 59 ? A -1.358 10.332 46.098 1 1 B GLN 0.840 1
ATOM 69 N N . CYS 60 60 ? A 1.357 4.654 46.909 1 1 B CYS 0.910 1
ATOM 70 C CA . CYS 60 60 ? A 2.228 3.613 46.408 1 1 B CYS 0.910 1
ATOM 71 C C . CYS 60 60 ? A 1.458 2.311 46.448 1 1 B CYS 0.910 1
ATOM 72 O O . CYS 60 60 ? A 1.307 1.695 47.500 1 1 B CYS 0.910 1
ATOM 73 C CB . CYS 60 60 ? A 3.521 3.491 47.256 1 1 B CYS 0.910 1
ATOM 74 S SG . CYS 60 60 ? A 4.492 5.035 47.280 1 1 B CYS 0.910 1
ATOM 75 N N . HIS 61 61 ? A 0.945 1.855 45.292 1 1 B HIS 0.820 1
ATOM 76 C CA . HIS 61 61 ? A 0.085 0.690 45.228 1 1 B HIS 0.820 1
ATOM 77 C C . HIS 61 61 ? A 0.393 -0.056 43.943 1 1 B HIS 0.820 1
ATOM 78 O O . HIS 61 61 ? A 0.429 0.536 42.872 1 1 B HIS 0.820 1
ATOM 79 C CB . HIS 61 61 ? A -1.407 1.111 45.262 1 1 B HIS 0.820 1
ATOM 80 C CG . HIS 61 61 ? A -2.399 0.012 45.066 1 1 B HIS 0.820 1
ATOM 81 N ND1 . HIS 61 61 ? A -2.404 -1.052 45.944 1 1 B HIS 0.820 1
ATOM 82 C CD2 . HIS 61 61 ? A -3.400 -0.116 44.160 1 1 B HIS 0.820 1
ATOM 83 C CE1 . HIS 61 61 ? A -3.412 -1.805 45.559 1 1 B HIS 0.820 1
ATOM 84 N NE2 . HIS 61 61 ? A -4.052 -1.287 44.481 1 1 B HIS 0.820 1
ATOM 85 N N . LEU 62 62 ? A 0.658 -1.377 44.022 1 1 B LEU 0.470 1
ATOM 86 C CA . LEU 62 62 ? A 0.858 -2.260 42.871 1 1 B LEU 0.470 1
ATOM 87 C C . LEU 62 62 ? A 1.961 -1.901 41.881 1 1 B LEU 0.470 1
ATOM 88 O O . LEU 62 62 ? A 1.775 -1.964 40.669 1 1 B LEU 0.470 1
ATOM 89 C CB . LEU 62 62 ? A -0.444 -2.516 42.084 1 1 B LEU 0.470 1
ATOM 90 C CG . LEU 62 62 ? A -1.528 -3.255 42.876 1 1 B LEU 0.470 1
ATOM 91 C CD1 . LEU 62 62 ? A -2.842 -3.173 42.091 1 1 B LEU 0.470 1
ATOM 92 C CD2 . LEU 62 62 ? A -1.141 -4.718 43.149 1 1 B LEU 0.470 1
ATOM 93 N N . ARG 63 63 ? A 3.165 -1.549 42.380 1 1 B ARG 0.430 1
ATOM 94 C CA . ARG 63 63 ? A 4.316 -1.192 41.555 1 1 B ARG 0.430 1
ATOM 95 C C . ARG 63 63 ? A 4.186 0.190 40.916 1 1 B ARG 0.430 1
ATOM 96 O O . ARG 63 63 ? A 4.961 0.559 40.037 1 1 B ARG 0.430 1
ATOM 97 C CB . ARG 63 63 ? A 4.695 -2.247 40.474 1 1 B ARG 0.430 1
ATOM 98 C CG . ARG 63 63 ? A 4.647 -3.713 40.951 1 1 B ARG 0.430 1
ATOM 99 C CD . ARG 63 63 ? A 5.051 -4.716 39.873 1 1 B ARG 0.430 1
ATOM 100 N NE . ARG 63 63 ? A 6.521 -4.516 39.687 1 1 B ARG 0.430 1
ATOM 101 C CZ . ARG 63 63 ? A 7.209 -4.874 38.596 1 1 B ARG 0.430 1
ATOM 102 N NH1 . ARG 63 63 ? A 6.614 -5.483 37.576 1 1 B ARG 0.430 1
ATOM 103 N NH2 . ARG 63 63 ? A 8.512 -4.606 38.521 1 1 B ARG 0.430 1
ATOM 104 N N . VAL 64 64 ? A 3.219 0.997 41.391 1 1 B VAL 0.880 1
ATOM 105 C CA . VAL 64 64 ? A 2.913 2.308 40.865 1 1 B VAL 0.880 1
ATOM 106 C C . VAL 64 64 ? A 3.113 3.276 42.008 1 1 B VAL 0.880 1
ATOM 107 O O . VAL 64 64 ? A 2.526 3.137 43.082 1 1 B VAL 0.880 1
ATOM 108 C CB . VAL 64 64 ? A 1.475 2.411 40.352 1 1 B VAL 0.880 1
ATOM 109 C CG1 . VAL 64 64 ? A 1.175 3.814 39.789 1 1 B VAL 0.880 1
ATOM 110 C CG2 . VAL 64 64 ? A 1.235 1.337 39.274 1 1 B VAL 0.880 1
ATOM 111 N N . VAL 65 65 ? A 3.980 4.280 41.803 1 1 B VAL 0.900 1
ATOM 112 C CA . VAL 65 65 ? A 4.236 5.339 42.756 1 1 B VAL 0.900 1
ATOM 113 C C . VAL 65 65 ? A 3.634 6.585 42.153 1 1 B VAL 0.900 1
ATOM 114 O O . VAL 65 65 ? A 4.058 7.074 41.106 1 1 B VAL 0.900 1
ATOM 115 C CB . VAL 65 65 ? A 5.724 5.526 43.046 1 1 B VAL 0.900 1
ATOM 116 C CG1 . VAL 65 65 ? A 5.962 6.748 43.956 1 1 B VAL 0.900 1
ATOM 117 C CG2 . VAL 65 65 ? A 6.254 4.243 43.716 1 1 B VAL 0.900 1
ATOM 118 N N . GLN 66 66 ? A 2.584 7.105 42.803 1 1 B GLN 0.840 1
ATOM 119 C CA . GLN 66 66 ? A 1.825 8.237 42.346 1 1 B GLN 0.840 1
ATOM 120 C C . GLN 66 66 ? A 2.101 9.428 43.252 1 1 B GLN 0.840 1
ATOM 121 O O . GLN 66 66 ? A 1.687 9.455 44.409 1 1 B GLN 0.840 1
ATOM 122 C CB . GLN 66 66 ? A 0.315 7.872 42.345 1 1 B GLN 0.840 1
ATOM 123 C CG . GLN 66 66 ? A -0.631 9.009 41.908 1 1 B GLN 0.840 1
ATOM 124 C CD . GLN 66 66 ? A -0.198 9.595 40.573 1 1 B GLN 0.840 1
ATOM 125 O OE1 . GLN 66 66 ? A 0.715 10.419 40.524 1 1 B GLN 0.840 1
ATOM 126 N NE2 . GLN 66 66 ? A -0.804 9.145 39.452 1 1 B GLN 0.840 1
ATOM 127 N N . CYS 67 67 ? A 2.832 10.436 42.725 1 1 B CYS 0.770 1
ATOM 128 C CA . CYS 67 67 ? A 3.263 11.635 43.427 1 1 B CYS 0.770 1
ATOM 129 C C . CYS 67 67 ? A 2.859 12.903 42.673 1 1 B CYS 0.770 1
ATOM 130 O O . CYS 67 67 ? A 3.438 13.969 42.877 1 1 B CYS 0.770 1
ATOM 131 C CB . CYS 67 67 ? A 4.801 11.657 43.663 1 1 B CYS 0.770 1
ATOM 132 S SG . CYS 67 67 ? A 5.412 10.417 44.849 1 1 B CYS 0.770 1
ATOM 133 N N . SER 68 68 ? A 1.865 12.836 41.759 1 1 B SER 0.780 1
ATOM 134 C CA . SER 68 68 ? A 1.327 14.026 41.094 1 1 B SER 0.780 1
ATOM 135 C C . SER 68 68 ? A 0.739 15.061 42.034 1 1 B SER 0.780 1
ATOM 136 O O . SER 68 68 ? A 0.233 14.751 43.112 1 1 B SER 0.780 1
ATOM 137 C CB . SER 68 68 ? A 0.245 13.772 40.014 1 1 B SER 0.780 1
ATOM 138 O OG . SER 68 68 ? A 0.789 13.038 38.914 1 1 B SER 0.780 1
ATOM 139 N N . ASP 69 69 ? A 0.841 16.339 41.624 1 1 B ASP 0.650 1
ATOM 140 C CA . ASP 69 69 ? A 0.147 17.459 42.234 1 1 B ASP 0.650 1
ATOM 141 C C . ASP 69 69 ? A 0.597 17.834 43.660 1 1 B ASP 0.650 1
ATOM 142 O O . ASP 69 69 ? A -0.139 18.463 44.420 1 1 B ASP 0.650 1
ATOM 143 C CB . ASP 69 69 ? A -1.395 17.301 42.118 1 1 B ASP 0.650 1
ATOM 144 C CG . ASP 69 69 ? A -1.762 16.739 40.750 1 1 B ASP 0.650 1
ATOM 145 O OD1 . ASP 69 69 ? A -2.445 15.685 40.700 1 1 B ASP 0.650 1
ATOM 146 O OD2 . ASP 69 69 ? A -1.295 17.325 39.736 1 1 B ASP 0.650 1
ATOM 147 N N . LEU 70 70 ? A 1.851 17.506 44.068 1 1 B LEU 0.910 1
ATOM 148 C CA . LEU 70 70 ? A 2.261 17.667 45.464 1 1 B LEU 0.910 1
ATOM 149 C C . LEU 70 70 ? A 3.147 18.875 45.766 1 1 B LEU 0.910 1
ATOM 150 O O . LEU 70 70 ? A 3.347 19.222 46.940 1 1 B LEU 0.910 1
ATOM 151 C CB . LEU 70 70 ? A 2.983 16.393 45.969 1 1 B LEU 0.910 1
ATOM 152 C CG . LEU 70 70 ? A 2.113 15.122 45.931 1 1 B LEU 0.910 1
ATOM 153 C CD1 . LEU 70 70 ? A 2.871 13.957 46.571 1 1 B LEU 0.910 1
ATOM 154 C CD2 . LEU 70 70 ? A 0.730 15.289 46.581 1 1 B LEU 0.910 1
ATOM 155 N N . GLY 71 71 ? A 3.638 19.547 44.708 1 1 B GLY 1.000 1
ATOM 156 C CA . GLY 71 71 ? A 4.640 20.609 44.777 1 1 B GLY 1.000 1
ATOM 157 C C . GLY 71 71 ? A 6.070 20.126 45.093 1 1 B GLY 1.000 1
ATOM 158 O O . GLY 71 71 ? A 6.309 18.890 45.155 1 1 B GLY 1.000 1
ATOM 159 O OXT . GLY 71 71 ? A 6.944 21.018 45.264 1 1 B GLY 1.000 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.767
2 1 3 0.203
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 51 GLY 1 0.520
2 1 A 52 PRO 1 0.500
3 1 A 53 VAL 1 0.810
4 1 A 54 CYS 1 0.890
5 1 A 55 PRO 1 0.880
6 1 A 56 PHE 1 0.780
7 1 A 57 ARG 1 0.700
8 1 A 58 CYS 1 0.820
9 1 A 59 GLN 1 0.840
10 1 A 60 CYS 1 0.910
11 1 A 61 HIS 1 0.820
12 1 A 62 LEU 1 0.470
13 1 A 63 ARG 1 0.430
14 1 A 64 VAL 1 0.880
15 1 A 65 VAL 1 0.900
16 1 A 66 GLN 1 0.840
17 1 A 67 CYS 1 0.770
18 1 A 68 SER 1 0.780
19 1 A 69 ASP 1 0.650
20 1 A 70 LEU 1 0.910
21 1 A 71 GLY 1 1.000
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
1 license
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