data_SMR-b209809ec35b2e789d1738963c4fdc03_1
_entry.id SMR-b209809ec35b2e789d1738963c4fdc03_1
_struct.entry_id SMR-b209809ec35b2e789d1738963c4fdc03_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - Q14697 (isoform 2)/ GANAB_HUMAN, Neutral alpha-glucosidase AB

Estimated model accuracy of this model is 0.299, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries Q14697 (isoform 2)'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 6598.579 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP GANAB_HUMAN Q14697 1
MAAVAAVAARRRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKCCWC
'Neutral alpha-glucosidase AB'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 52 1 52
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . GANAB_HUMAN Q14697 Q14697-2 1 52 9606 'Homo sapiens (Human)' 2004-07-05
012B4BAD808BCD74
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A MAAVAAVAARRRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKCCWC
MAAVAAVAARRRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKCCWC
#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 ALA .
1 3 ALA .
1 4 VAL .
1 5 ALA .
1 6 ALA .
1 7 VAL .
1 8 ALA .
1 9 ALA .
1 10 ARG .
1 11 ARG .
1 12 ARG .
1 13 ARG .
1 14 SER .
1 15 TRP .
1 16 ALA .
1 17 SER .
1 18 LEU .
1 19 VAL .
1 20 LEU .
1 21 ALA .
1 22 PHE .
1 23 LEU .
1 24 GLY .
1 25 VAL .
1 26 CYS .
1 27 LEU .
1 28 GLY .
1 29 ILE .
1 30 THR .
1 31 LEU .
1 32 ALA .
1 33 VAL .
1 34 ASP .
1 35 ARG .
1 36 SER .
1 37 ASN .
1 38 PHE .
1 39 LYS .
1 40 THR .
1 41 CYS .
1 42 GLU .
1 43 GLU .
1 44 SER .
1 45 SER .
1 46 PHE .
1 47 CYS .
1 48 LYS .
1 49 CYS .
1 50 CYS .
1 51 TRP .
1 52 CYS .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 ALA 2 ? ? ? A .
A 1 3 ALA 3 ? ? ? A .
A 1 4 VAL 4 ? ? ? A .
A 1 5 ALA 5 ? ? ? A .
A 1 6 ALA 6 ? ? ? A .
A 1 7 VAL 7 ? ? ? A .
A 1 8 ALA 8 ? ? ? A .
A 1 9 ALA 9 ? ? ? A .
A 1 10 ARG 10 ? ? ? A .
A 1 11 ARG 11 ? ? ? A .
A 1 12 ARG 12 ? ? ? A .
A 1 13 ARG 13 ? ? ? A .
A 1 14 SER 14 ? ? ? A .
A 1 15 TRP 15 ? ? ? A .
A 1 16 ALA 16 ? ? ? A .
A 1 17 SER 17 ? ? ? A .
A 1 18 LEU 18 ? ? ? A .
A 1 19 VAL 19 ? ? ? A .
A 1 20 LEU 20 ? ? ? A .
A 1 21 ALA 21 ? ? ? A .
A 1 22 PHE 22 ? ? ? A .
A 1 23 LEU 23 ? ? ? A .
A 1 24 GLY 24 ? ? ? A .
A 1 25 VAL 25 ? ? ? A .
A 1 26 CYS 26 ? ? ? A .
A 1 27 LEU 27 ? ? ? A .
A 1 28 GLY 28 ? ? ? A .
A 1 29 ILE 29 ? ? ? A .
A 1 30 THR 30 ? ? ? A .
A 1 31 LEU 31 ? ? ? A .
A 1 32 ALA 32 ? ? ? A .
A 1 33 VAL 33 33 VAL VAL A .
A 1 34 ASP 34 34 ASP ASP A .
A 1 35 ARG 35 35 ARG ARG A .
A 1 36 SER 36 36 SER SER A .
A 1 37 ASN 37 37 ASN ASN A .
A 1 38 PHE 38 38 PHE PHE A .
A 1 39 LYS 39 39 LYS LYS A .
A 1 40 THR 40 40 THR THR A .
A 1 41 CYS 41 41 CYS CYS A .
A 1 42 GLU 42 42 GLU GLU A .
A 1 43 GLU 43 43 GLU GLU A .
A 1 44 SER 44 44 SER SER A .
A 1 45 SER 45 45 SER SER A .
A 1 46 PHE 46 46 PHE PHE A .
A 1 47 CYS 47 47 CYS CYS A .
A 1 48 LYS 48 48 LYS LYS A .
A 1 49 CYS 49 49 CYS CYS A .
A 1 50 CYS 50 50 CYS CYS A .
A 1 51 TRP 51 51 TRP TRP A .
A 1 52 CYS 52 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Neutral alpha-glucosidase AB {PDB ID=8emr, label_asym_id=A, auth_asym_id=A, SMTL ID=8emr.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 8emr, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-11-27
6 PDB https://www.wwpdb.org . 2024-11-22
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1
;MAAVAAVAARRRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKRQRSIRPGLSPYRALLDSLQLG
PDSLTVHLIHEVTKVLLVLELQGLQKNMTRFRIDELEPRRPRYRVPDVLVADPPIARLSVSGRDENSVEL
TMAEGPYKIILTARPFRLDLLEDRSLLLSVNARGLLEFEHQRAPRVSQGSKDPAEGDGAQPEETPRDGDK
PEETQGKAEKDEPGAWEETFKTHSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLRLKVTEGGEPYRLY
NLDVFQYELYNPMALYGSVPVLLAHNPHRDLGIFWLNAAETWVDISSNTAGKTLFGKMMDYLQGSGETPQ
TDVRWMSETGIIDVFLLLGPSISDVFRQYASLTGTQALPPLFSLGYHQSRWNYRDEADVLEVDQGFDDHN
LPCDVIWLDIEHADGKRYFTWDPSRFPQPRTMLERLASKRRKLVAIVDPHIKVDSGYRVHEELRNLGLYV
KTRDGSDYEGWCWPGSAGYPDFTNPTMRAWWANMFSYDNYEGSAPNLFVWNDMNEPSVFNGPEVTMLKDA
QHYGGWEHRDVHNIYGLYVHMATADGLRQRSGGMERPFVLARAFFAGSQRFGAVWTGDNTAEWDHLKISI
PMCLSLGLVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLPSQHNDIIRDA
LGQRYSLLPFWYTLLYQAHREGIPVMRPLWVQYPQDVTTFNIDDQYLLGDALLVHPVSDSGAHGVQVYLP
GQGEVWYDIQSYQKHHGPQTLYLPVTLSSIPVFQRGGTIVPRWMRVRRSSECMKDDPITLFVALSPQGTA
QGELFLDDGHTFNYQTRQEFLLRRFSFSGNTLVSSSADPEGHFETPIWIERVVIIGAGKPAAVVLQTKGS
PESRLSFQHDPETSVLVLRKPGINVASDWSIHLR
;

;MAAVAAVAARRRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKRQRSIRPGLSPYRALLDSLQLG
PDSLTVHLIHEVTKVLLVLELQGLQKNMTRFRIDELEPRRPRYRVPDVLVADPPIARLSVSGRDENSVEL
TMAEGPYKIILTARPFRLDLLEDRSLLLSVNARGLLEFEHQRAPRVSQGSKDPAEGDGAQPEETPRDGDK
PEETQGKAEKDEPGAWEETFKTHSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLRLKVTEGGEPYRLY
NLDVFQYELYNPMALYGSVPVLLAHNPHRDLGIFWLNAAETWVDISSNTAGKTLFGKMMDYLQGSGETPQ
TDVRWMSETGIIDVFLLLGPSISDVFRQYASLTGTQALPPLFSLGYHQSRWNYRDEADVLEVDQGFDDHN
LPCDVIWLDIEHADGKRYFTWDPSRFPQPRTMLERLASKRRKLVAIVDPHIKVDSGYRVHEELRNLGLYV
KTRDGSDYEGWCWPGSAGYPDFTNPTMRAWWANMFSYDNYEGSAPNLFVWNDMNEPSVFNGPEVTMLKDA
QHYGGWEHRDVHNIYGLYVHMATADGLRQRSGGMERPFVLARAFFAGSQRFGAVWTGDNTAEWDHLKISI
PMCLSLGLVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLPSQHNDIIRDA
LGQRYSLLPFWYTLLYQAHREGIPVMRPLWVQYPQDVTTFNIDDQYLLGDALLVHPVSDSGAHGVQVYLP
GQGEVWYDIQSYQKHHGPQTLYLPVTLSSIPVFQRGGTIVPRWMRVRRSSECMKDDPITLFVALSPQGTA
QGELFLDDGHTFNYQTRQEFLLRRFSFSGNTLVSSSADPEGHFETPIWIERVVIIGAGKPAAVVLQTKGS
PESRLSFQHDPETSVLVLRKPGINVASDWSIHLR
;

#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 1 51
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 8emr 2024-11-13
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 52
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 52 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 4.2e-12 94.118
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1 MAAVAAVAARRRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKCCWC
2 1 2 MAAVAAVAARRRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKRQR-
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 8emr.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . VAL 33 33 ? A 179.146 178.165 171.557 1 1 A VAL 0.890 1
ATOM 2 C CA . VAL 33 33 ? A 178.238 177.836 172.723 1 1 A VAL 0.890 1
ATOM 3 C C . VAL 33 33 ? A 178.753 178.525 173.962 1 1 A VAL 0.890 1
ATOM 4 O O . VAL 33 33 ? A 179.962 178.719 174.041 1 1 A VAL 0.890 1
ATOM 5 C CB . VAL 33 33 ? A 178.188 176.303 172.949 1 1 A VAL 0.890 1
ATOM 6 C CG1 . VAL 33 33 ? A 179.548 175.682 173.373 1 1 A VAL 0.890 1
ATOM 7 C CG2 . VAL 33 33 ? A 177.080 175.903 173.955 1 1 A VAL 0.890 1
ATOM 8 N N . ASP 34 34 ? A 177.902 178.907 174.935 1 1 A ASP 0.740 1
ATOM 9 C CA . ASP 34 34 ? A 178.350 179.404 176.198 1 1 A ASP 0.740 1
ATOM 10 C C . ASP 34 34 ? A 177.744 178.407 177.180 1 1 A ASP 0.740 1
ATOM 11 O O . ASP 34 34 ? A 176.532 178.207 177.189 1 1 A ASP 0.740 1
ATOM 12 C CB . ASP 34 34 ? A 177.885 180.863 176.395 1 1 A ASP 0.740 1
ATOM 13 C CG . ASP 34 34 ? A 178.565 181.318 177.662 1 1 A ASP 0.740 1
ATOM 14 O OD1 . ASP 34 34 ? A 179.794 181.565 177.604 1 1 A ASP 0.740 1
ATOM 15 O OD2 . ASP 34 34 ? A 177.896 181.261 178.720 1 1 A ASP 0.740 1
ATOM 16 N N . ARG 35 35 ? A 178.584 177.680 177.954 1 1 A ARG 0.730 1
ATOM 17 C CA . ARG 35 35 ? A 178.114 176.707 178.927 1 1 A ARG 0.730 1
ATOM 18 C C . ARG 35 35 ? A 177.767 177.362 180.256 1 1 A ARG 0.730 1
ATOM 19 O O . ARG 35 35 ? A 177.105 176.737 181.076 1 1 A ARG 0.730 1
ATOM 20 C CB . ARG 35 35 ? A 179.170 175.601 179.189 1 1 A ARG 0.730 1
ATOM 21 C CG . ARG 35 35 ? A 179.337 174.582 178.043 1 1 A ARG 0.730 1
ATOM 22 C CD . ARG 35 35 ? A 180.528 173.647 178.276 1 1 A ARG 0.730 1
ATOM 23 N NE . ARG 35 35 ? A 180.642 172.722 177.092 1 1 A ARG 0.730 1
ATOM 24 C CZ . ARG 35 35 ? A 180.227 171.447 177.042 1 1 A ARG 0.730 1
ATOM 25 N NH1 . ARG 35 35 ? A 179.592 170.871 178.057 1 1 A ARG 0.730 1
ATOM 26 N NH2 . ARG 35 35 ? A 180.455 170.725 175.944 1 1 A ARG 0.730 1
ATOM 27 N N . SER 36 36 ? A 178.169 178.633 180.484 1 1 A SER 0.820 1
ATOM 28 C CA . SER 36 36 ? A 177.916 179.368 181.725 1 1 A SER 0.820 1
ATOM 29 C C . SER 36 36 ? A 176.453 179.739 181.884 1 1 A SER 0.820 1
ATOM 30 O O . SER 36 36 ? A 175.975 179.973 182.994 1 1 A SER 0.820 1
ATOM 31 C CB . SER 36 36 ? A 178.669 180.724 181.807 1 1 A SER 0.820 1
ATOM 32 O OG . SER 36 36 ? A 180.097 180.595 181.788 1 1 A SER 0.820 1
ATOM 33 N N . ASN 37 37 ? A 175.677 179.806 180.781 1 1 A ASN 0.750 1
ATOM 34 C CA . ASN 37 37 ? A 174.257 180.113 180.850 1 1 A ASN 0.750 1
ATOM 35 C C . ASN 37 37 ? A 173.360 178.878 180.993 1 1 A ASN 0.750 1
ATOM 36 O O . ASN 37 37 ? A 172.136 178.997 180.915 1 1 A ASN 0.750 1
ATOM 37 C CB . ASN 37 37 ? A 173.755 180.894 179.598 1 1 A ASN 0.750 1
ATOM 38 C CG . ASN 37 37 ? A 174.504 182.193 179.307 1 1 A ASN 0.750 1
ATOM 39 O OD1 . ASN 37 37 ? A 174.683 182.558 178.139 1 1 A ASN 0.750 1
ATOM 40 N ND2 . ASN 37 37 ? A 174.905 182.948 180.349 1 1 A ASN 0.750 1
ATOM 41 N N . PHE 38 38 ? A 173.912 177.672 181.235 1 1 A PHE 0.780 1
ATOM 42 C CA . PHE 38 38 ? A 173.140 176.445 181.326 1 1 A PHE 0.780 1
ATOM 43 C C . PHE 38 38 ? A 173.600 175.694 182.544 1 1 A PHE 0.780 1
ATOM 44 O O . PHE 38 38 ? A 174.782 175.682 182.858 1 1 A PHE 0.780 1
ATOM 45 C CB . PHE 38 38 ? A 173.338 175.494 180.119 1 1 A PHE 0.780 1
ATOM 46 C CG . PHE 38 38 ? A 172.880 176.164 178.863 1 1 A PHE 0.780 1
ATOM 47 C CD1 . PHE 38 38 ? A 171.521 176.429 178.650 1 1 A PHE 0.780 1
ATOM 48 C CD2 . PHE 38 38 ? A 173.809 176.595 177.907 1 1 A PHE 0.780 1
ATOM 49 C CE1 . PHE 38 38 ? A 171.095 177.091 177.494 1 1 A PHE 0.780 1
ATOM 50 C CE2 . PHE 38 38 ? A 173.388 177.259 176.750 1 1 A PHE 0.780 1
ATOM 51 C CZ . PHE 38 38 ? A 172.028 177.496 176.535 1 1 A PHE 0.780 1
ATOM 52 N N . LYS 39 39 ? A 172.667 175.041 183.259 1 1 A LYS 0.800 1
ATOM 53 C CA . LYS 39 39 ? A 172.993 174.338 184.481 1 1 A LYS 0.800 1
ATOM 54 C C . LYS 39 39 ? A 173.481 172.924 184.247 1 1 A LYS 0.800 1
ATOM 55 O O . LYS 39 39 ? A 172.910 172.167 183.466 1 1 A LYS 0.800 1
ATOM 56 C CB . LYS 39 39 ? A 171.766 174.184 185.414 1 1 A LYS 0.800 1
ATOM 57 C CG . LYS 39 39 ? A 171.085 175.512 185.763 1 1 A LYS 0.800 1
ATOM 58 C CD . LYS 39 39 ? A 169.947 175.325 186.780 1 1 A LYS 0.800 1
ATOM 59 C CE . LYS 39 39 ? A 168.916 176.458 186.761 1 1 A LYS 0.800 1
ATOM 60 N NZ . LYS 39 39 ? A 167.769 176.112 187.632 1 1 A LYS 0.800 1
ATOM 61 N N . THR 40 40 ? A 174.507 172.536 185.019 1 1 A THR 0.860 1
ATOM 62 C CA . THR 40 40 ? A 174.952 171.169 185.226 1 1 A THR 0.860 1
ATOM 63 C C . THR 40 40 ? A 174.152 170.476 186.330 1 1 A THR 0.860 1
ATOM 64 O O . THR 40 40 ? A 173.189 171.011 186.885 1 1 A THR 0.860 1
ATOM 65 C CB . THR 40 40 ? A 176.451 171.081 185.515 1 1 A THR 0.860 1
ATOM 66 O OG1 . THR 40 40 ? A 176.812 171.607 186.796 1 1 A THR 0.860 1
ATOM 67 C CG2 . THR 40 40 ? A 177.194 171.868 184.418 1 1 A THR 0.860 1
ATOM 68 N N . CYS 41 41 ? A 174.501 169.209 186.664 1 1 A CYS 0.880 1
ATOM 69 C CA . CYS 41 41 ? A 173.918 168.468 187.772 1 1 A CYS 0.880 1
ATOM 70 C C . CYS 41 41 ? A 174.321 169.063 189.123 1 1 A CYS 0.880 1
ATOM 71 O O . CYS 41 41 ? A 173.552 168.991 190.076 1 1 A CYS 0.880 1
ATOM 72 C CB . CYS 41 41 ? A 174.261 166.954 187.673 1 1 A CYS 0.880 1
ATOM 73 S SG . CYS 41 41 ? A 173.308 165.852 188.778 1 1 A CYS 0.880 1
ATOM 74 N N . GLU 42 42 ? A 175.518 169.681 189.258 1 1 A GLU 0.800 1
ATOM 75 C CA . GLU 42 42 ? A 175.923 170.378 190.469 1 1 A GLU 0.800 1
ATOM 76 C C . GLU 42 42 ? A 175.157 171.662 190.781 1 1 A GLU 0.800 1
ATOM 77 O O . GLU 42 42 ? A 174.773 171.886 191.932 1 1 A GLU 0.800 1
ATOM 78 C CB . GLU 42 42 ? A 177.441 170.699 190.471 1 1 A GLU 0.800 1
ATOM 79 C CG . GLU 42 42 ? A 178.343 169.444 190.352 1 1 A GLU 0.800 1
ATOM 80 C CD . GLU 42 42 ? A 178.534 168.907 188.930 1 1 A GLU 0.800 1
ATOM 81 O OE1 . GLU 42 42 ? A 178.082 169.555 187.947 1 1 A GLU 0.800 1
ATOM 82 O OE2 . GLU 42 42 ? A 179.097 167.789 188.844 1 1 A GLU 0.800 1
ATOM 83 N N . GLU 43 43 ? A 174.934 172.530 189.768 1 1 A GLU 0.800 1
ATOM 84 C CA . GLU 43 43 ? A 174.138 173.750 189.838 1 1 A GLU 0.800 1
ATOM 85 C C . GLU 43 43 ? A 172.647 173.482 189.982 1 1 A GLU 0.800 1
ATOM 86 O O . GLU 43 43 ? A 171.914 174.194 190.671 1 1 A GLU 0.800 1
ATOM 87 C CB . GLU 43 43 ? A 174.377 174.596 188.570 1 1 A GLU 0.800 1
ATOM 88 C CG . GLU 43 43 ? A 175.818 175.146 188.482 1 1 A GLU 0.800 1
ATOM 89 C CD . GLU 43 43 ? A 176.216 175.499 187.050 1 1 A GLU 0.800 1
ATOM 90 O OE1 . GLU 43 43 ? A 175.808 174.748 186.126 1 1 A GLU 0.800 1
ATOM 91 O OE2 . GLU 43 43 ? A 176.942 176.510 186.889 1 1 A GLU 0.800 1
ATOM 92 N N . SER 44 44 ? A 172.137 172.436 189.302 1 1 A SER 0.870 1
ATOM 93 C CA . SER 44 44 ? A 170.780 171.946 189.507 1 1 A SER 0.870 1
ATOM 94 C C . SER 44 44 ? A 170.608 171.235 190.848 1 1 A SER 0.870 1
ATOM 95 O O . SER 44 44 ? A 171.125 170.144 191.071 1 1 A SER 0.870 1
ATOM 96 C CB . SER 44 44 ? A 170.300 171.015 188.368 1 1 A SER 0.870 1
ATOM 97 O OG . SER 44 44 ? A 168.901 170.730 188.485 1 1 A SER 0.870 1
ATOM 98 N N . SER 45 45 ? A 169.839 171.840 191.785 1 1 A SER 0.870 1
ATOM 99 C CA . SER 45 45 ? A 169.742 171.378 193.167 1 1 A SER 0.870 1
ATOM 100 C C . SER 45 45 ? A 169.169 169.979 193.334 1 1 A SER 0.870 1
ATOM 101 O O . SER 45 45 ? A 169.728 169.143 194.042 1 1 A SER 0.870 1
ATOM 102 C CB . SER 45 45 ? A 168.933 172.374 194.052 1 1 A SER 0.870 1
ATOM 103 O OG . SER 45 45 ? A 167.579 172.538 193.617 1 1 A SER 0.870 1
ATOM 104 N N . PHE 46 46 ? A 168.057 169.671 192.639 1 1 A PHE 0.800 1
ATOM 105 C CA . PHE 46 46 ? A 167.397 168.375 192.668 1 1 A PHE 0.800 1
ATOM 106 C C . PHE 46 46 ? A 168.243 167.244 192.079 1 1 A PHE 0.800 1
ATOM 107 O O . PHE 46 46 ? A 168.293 166.155 192.641 1 1 A PHE 0.800 1
ATOM 108 C CB . PHE 46 46 ? A 165.944 168.446 192.086 1 1 A PHE 0.800 1
ATOM 109 C CG . PHE 46 46 ? A 165.870 168.428 190.576 1 1 A PHE 0.800 1
ATOM 110 C CD1 . PHE 46 46 ? A 166.038 169.587 189.801 1 1 A PHE 0.800 1
ATOM 111 C CD2 . PHE 46 46 ? A 165.662 167.208 189.911 1 1 A PHE 0.800 1
ATOM 112 C CE1 . PHE 46 46 ? A 166.007 169.522 188.400 1 1 A PHE 0.800 1
ATOM 113 C CE2 . PHE 46 46 ? A 165.645 167.141 188.514 1 1 A PHE 0.800 1
ATOM 114 C CZ . PHE 46 46 ? A 165.816 168.299 187.755 1 1 A PHE 0.800 1
ATOM 115 N N . CYS 47 47 ? A 168.965 167.478 190.954 1 1 A CYS 0.860 1
ATOM 116 C CA . CYS 47 47 ? A 169.859 166.500 190.333 1 1 A CYS 0.860 1
ATOM 117 C C . CYS 47 47 ? A 170.982 166.108 191.276 1 1 A CYS 0.860 1
ATOM 118 O O . CYS 47 47 ? A 171.233 164.926 191.492 1 1 A CYS 0.860 1
ATOM 119 C CB . CYS 47 47 ? A 170.449 167.039 188.992 1 1 A CYS 0.860 1
ATOM 120 S SG . CYS 47 47 ? A 171.421 165.835 188.007 1 1 A CYS 0.860 1
ATOM 121 N N . LYS 48 48 ? A 171.622 167.103 191.918 1 1 A LYS 0.830 1
ATOM 122 C CA . LYS 48 48 ? A 172.632 166.892 192.937 1 1 A LYS 0.830 1
ATOM 123 C C . LYS 48 48 ? A 172.159 166.152 194.182 1 1 A LYS 0.830 1
ATOM 124 O O . LYS 48 48 ? A 172.895 165.341 194.735 1 1 A LYS 0.830 1
ATOM 125 C CB . LYS 48 48 ? A 173.169 168.260 193.417 1 1 A LYS 0.830 1
ATOM 126 C CG . LYS 48 48 ? A 174.264 168.161 194.493 1 1 A LYS 0.830 1
ATOM 127 C CD . LYS 48 48 ? A 174.502 169.504 195.198 1 1 A LYS 0.830 1
ATOM 128 C CE . LYS 48 48 ? A 175.724 169.537 196.110 1 1 A LYS 0.830 1
ATOM 129 N NZ . LYS 48 48 ? A 176.888 169.246 195.260 1 1 A LYS 0.830 1
ATOM 130 N N . CYS 49 49 ? A 170.952 166.458 194.691 1 1 A CYS 0.820 1
ATOM 131 C CA . CYS 49 49 ? A 170.404 165.817 195.878 1 1 A CYS 0.820 1
ATOM 132 C C . CYS 49 49 ? A 169.775 164.442 195.626 1 1 A CYS 0.820 1
ATOM 133 O O . CYS 49 49 ? A 169.470 163.727 196.582 1 1 A CYS 0.820 1
ATOM 134 C CB . CYS 49 49 ? A 169.328 166.722 196.539 1 1 A CYS 0.820 1
ATOM 135 S SG . CYS 49 49 ? A 169.975 168.287 197.214 1 1 A CYS 0.820 1
ATOM 136 N N . CYS 50 50 ? A 169.535 164.059 194.353 1 1 A CYS 0.810 1
ATOM 137 C CA . CYS 50 50 ? A 169.022 162.745 193.973 1 1 A CYS 0.810 1
ATOM 138 C C . CYS 50 50 ? A 170.075 161.771 193.411 1 1 A CYS 0.810 1
ATOM 139 O O . CYS 50 50 ? A 169.827 160.563 193.406 1 1 A CYS 0.810 1
ATOM 140 C CB . CYS 50 50 ? A 167.925 162.883 192.873 1 1 A CYS 0.810 1
ATOM 141 S SG . CYS 50 50 ? A 166.358 163.625 193.436 1 1 A CYS 0.810 1
ATOM 142 N N . TRP 51 51 ? A 171.239 162.257 192.919 1 1 A TRP 0.770 1
ATOM 143 C CA . TRP 51 51 ? A 172.395 161.439 192.565 1 1 A TRP 0.770 1
ATOM 144 C C . TRP 51 51 ? A 173.287 161.160 193.816 1 1 A TRP 0.770 1
ATOM 145 O O . TRP 51 51 ? A 173.180 161.914 194.822 1 1 A TRP 0.770 1
ATOM 146 C CB . TRP 51 51 ? A 173.186 162.109 191.389 1 1 A TRP 0.770 1
ATOM 147 C CG . TRP 51 51 ? A 174.317 161.285 190.767 1 1 A TRP 0.770 1
ATOM 148 C CD1 . TRP 51 51 ? A 174.262 160.241 189.887 1 1 A TRP 0.770 1
ATOM 149 C CD2 . TRP 51 51 ? A 175.700 161.397 191.147 1 1 A TRP 0.770 1
ATOM 150 N NE1 . TRP 51 51 ? A 175.521 159.698 189.679 1 1 A TRP 0.770 1
ATOM 151 C CE2 . TRP 51 51 ? A 176.411 160.398 190.470 1 1 A TRP 0.770 1
ATOM 152 C CE3 . TRP 51 51 ? A 176.326 162.240 192.053 1 1 A TRP 0.770 1
ATOM 153 C CZ2 . TRP 51 51 ? A 177.778 160.217 190.688 1 1 A TRP 0.770 1
ATOM 154 C CZ3 . TRP 51 51 ? A 177.697 162.068 192.270 1 1 A TRP 0.770 1
ATOM 155 C CH2 . TRP 51 51 ? A 178.416 161.075 191.600 1 1 A TRP 0.770 1
ATOM 156 O OXT . TRP 51 51 ? A 174.056 160.162 193.784 1 1 A TRP 0.770 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.815
2 1 3 0.299
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 33 VAL 1 0.890
2 1 A 34 ASP 1 0.740
3 1 A 35 ARG 1 0.730
4 1 A 36 SER 1 0.820
5 1 A 37 ASN 1 0.750
6 1 A 38 PHE 1 0.780
7 1 A 39 LYS 1 0.800
8 1 A 40 THR 1 0.860
9 1 A 41 CYS 1 0.880
10 1 A 42 GLU 1 0.800
11 1 A 43 GLU 1 0.800
12 1 A 44 SER 1 0.870
13 1 A 45 SER 1 0.870
14 1 A 46 PHE 1 0.800
15 1 A 47 CYS 1 0.860
16 1 A 48 LYS 1 0.830
17 1 A 49 CYS 1 0.820
18 1 A 50 CYS 1 0.810
19 1 A 51 TRP 1 0.770
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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