data_SMR-6f5acf18097b258cbe58bd89701912fd_3 _entry.id SMR-6f5acf18097b258cbe58bd89701912fd_3 _struct.entry_id SMR-6f5acf18097b258cbe58bd89701912fd_3 _struct.pdbx_model_details ;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries: - A6KL13/ A6KL13_RAT, Vesicle-associated membrane protein, associated protein B and C - Q9Z269/ VAPB_RAT, Vesicle-associated membrane protein-associated protein B Estimated model accuracy of this model is 0.039, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE). ; _struct.pdbx_structure_determination_methodology computational _struct.title 'Model for UniProtKB entries A6KL13, Q9Z269' _audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic _audit_conform.dict_name mmcif_ma.dic _audit_conform.dict_version 1.4.6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SWISS-MODEL Repository - new features and functionality' 'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132 2 'SWISS-MODEL: homology modelling of protein structures and complexes' 'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427 3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1) 1 18 2021 33507980 10.1371/journal.pcbi.1008667 4 'QMEANDisCo - distance constraints applied on model quality estimation' Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828 5 'OpenStructure: an integrated software framework for computational structural biology' 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579 10.1107/S0907444913007051 6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500 10.1186/1471-2105-10-421 7 'HH-suite3 for fast remote homology detection and deep protein annotation' 'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7 # # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bienert, S.' 1 primary 'Waterhouse, A.' 2 primary 'de Beer, T.A.P.' 3 primary 'Tauriello, G.' 4 primary 'Studer, G.' 5 primary 'Bordoli, L.' 6 primary 'Schwede, T.' 7 2 'Waterhouse, A.' 8 2 'Bertoni, M.' 9 2 'Bienert, S.' 10 2 'Studer, G.' 11 2 'Tauriello, G.' 12 2 'Gumienny, R.' 13 2 'Heer, F.T.' 14 2 'de Beer, T.A.P.' 15 2 'Rempfer, C.' 16 2 'Bordoli, L.' 17 2 'Lepore, R.' 18 2 'Schwede, T.' 19 3 'Studer, G.' 20 3 'Tauriello, G.' 21 3 'Bienert, S.' 22 3 'Biasini, M.' 23 3 'Johner, N.' 24 3 'Schwede, T.' 25 4 'Studer, G.' 26 4 'Rempfer, C.' 27 4 'Waterhouse, A.M.' 28 4 'Gumienny, R.' 29 4 'Haas, J.' 30 4 'Schwede, T.' 31 5 'Biasini, M.' 32 5 'Schmidt, T.' 33 5 'Bienert, S.' 34 5 'Mariani, V.' 35 5 'Studer, G.' 36 5 'Haas, J.' 37 5 'Johner, N.' 38 5 'Schenk, A.D.' 39 5 'Philippsen, A.' 40 5 'Schwede, T.' 41 6 'Camacho, C.' 42 6 'Coulouris, G.' 43 6 'Avagyan, V.' 44 6 'Ma, N.' 45 6 'Papadopoulos, J.' 46 6 'Bealer, K.' 47 6 'Madden, T.L.' 48 7 'Steinegger, M.' 49 7 'Meier, M.' 50 7 'Mirdita, M.' 51 7 'Vohringer, H.' 52 7 'Haunsberger, S.J.' 53 7 'Soding, J.' 54 # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location _software.citation_id 1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3 package https://swissmodel.expasy.org 2 2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library https://git.scicore.unibas.ch/schwede/ProMod3 3 3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1 library https://git.scicore.unibas.ch/schwede/QMEAN 4 4 OpenStructure 'data processing' 'Open-Source Computational Structural Biology Framework' 2.8.0 package https://openstructure.org/ 5 5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6 6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0 package https://github.com/soedinglab/hh-suite 7 # # loop_ _ma_software_group.ordinal_id _ma_software_group.group_id _ma_software_group.software_id _ma_software_group.parameter_group_id 1 1 6 . 2 2 1 . 3 2 4 . 4 2 5 . 5 2 6 . 6 3 1 . 7 3 4 . 8 4 1 . 9 4 2 . 10 4 4 . 11 5 3 . 12 6 1 . 13 6 3 . 14 6 4 . # # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bienert, S.' 1 'Waterhouse, A.' 2 'de Beer, T.A.P.' 3 'Tauriello, G.' 4 'Studer, G.' 5 'Bordoli, L.' 6 'Schwede, T.' 7 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight _chem_comp.ma_provenance ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core' ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core' ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core' ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core' CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core' GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core' GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core' GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core' HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core' ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core' MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core' PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core' PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core' SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core' THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core' TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core' TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core' VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core' # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man . 31314.187 1 . # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP VAPB_RAT Q9Z269 1 ;MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVS VMLQPFDYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVFELPAENAKPHDVEINKI MPTSASKTEAPVAAKPLTSPLDDAEVKKVMEECRRLQGEVQRLREESRQLKEEDGLRARKALPSNSPMAA LAASGKEEGLSARLLALVVLFFIVGVIIGKIAL ; 'Vesicle-associated membrane protein-associated protein B' 2 1 UNP A6KL13_RAT A6KL13 1 ;MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVS VMLQPFDYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVFELPAENAKPHDVEINKI MPTSASKTEAPVAAKPLTSPLDDAEVKKVMEECRRLQGEVQRLREESRQLKEEDGLRARKALPSNSPMAA LAASGKEEGLSARLLALVVLFFIVGVIIGKIAL ; 'Vesicle-associated membrane protein, associated protein B and C' # # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 243 1 243 2 2 1 243 1 243 # # loop_ _ma_target_ref_db_details.target_entity_id _ma_target_ref_db_details.db_name _ma_target_ref_db_details.db_name_other_details _ma_target_ref_db_details.db_code _ma_target_ref_db_details.db_accession _ma_target_ref_db_details.seq_db_isoform _ma_target_ref_db_details.seq_db_align_begin _ma_target_ref_db_details.seq_db_align_end _ma_target_ref_db_details.ncbi_taxonomy_id _ma_target_ref_db_details.organism_scientific _ma_target_ref_db_details.seq_db_sequence_version_date _ma_target_ref_db_details.seq_db_sequence_checksum 1 UNP . VAPB_RAT Q9Z269 . 1 243 10116 'Rattus norvegicus (Rat)' 2007-01-23 870B177B0798B4EA 1 UNP . A6KL13_RAT A6KL13 . 1 243 10116 'Rattus norvegicus (Rat)' 2023-06-28 870B177B0798B4EA # # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polypeptide(L) no no A ;MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVS VMLQPFDYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVFELPAENAKPHDVEINKI MPTSASKTEAPVAAKPLTSPLDDAEVKKVMEECRRLQGEVQRLREESRQLKEEDGLRARKALPSNSPMAA LAASGKEEGLSARLLALVVLFFIVGVIIGKIAL ; ;MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVS VMLQPFDYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVFELPAENAKPHDVEINKI MPTSASKTEAPVAAKPLTSPLDDAEVKKVMEECRRLQGEVQRLREESRQLKEEDGLRARKALPSNSPMAA LAASGKEEGLSARLLALVVLFFIVGVIIGKIAL ; # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET . 1 2 ALA . 1 3 LYS . 1 4 VAL . 1 5 GLU . 1 6 GLN . 1 7 VAL . 1 8 LEU . 1 9 SER . 1 10 LEU . 1 11 GLU . 1 12 PRO . 1 13 GLN . 1 14 HIS . 1 15 GLU . 1 16 LEU . 1 17 LYS . 1 18 PHE . 1 19 ARG . 1 20 GLY . 1 21 PRO . 1 22 PHE . 1 23 THR . 1 24 ASP . 1 25 VAL . 1 26 VAL . 1 27 THR . 1 28 THR . 1 29 ASN . 1 30 LEU . 1 31 LYS . 1 32 LEU . 1 33 GLY . 1 34 ASN . 1 35 PRO . 1 36 THR . 1 37 ASP . 1 38 ARG . 1 39 ASN . 1 40 VAL . 1 41 CYS . 1 42 PHE . 1 43 LYS . 1 44 VAL . 1 45 LYS . 1 46 THR . 1 47 THR . 1 48 ALA . 1 49 PRO . 1 50 ARG . 1 51 ARG . 1 52 TYR . 1 53 CYS . 1 54 VAL . 1 55 ARG . 1 56 PRO . 1 57 ASN . 1 58 SER . 1 59 GLY . 1 60 VAL . 1 61 ILE . 1 62 ASP . 1 63 ALA . 1 64 GLY . 1 65 ALA . 1 66 SER . 1 67 LEU . 1 68 ASN . 1 69 VAL . 1 70 SER . 1 71 VAL . 1 72 MET . 1 73 LEU . 1 74 GLN . 1 75 PRO . 1 76 PHE . 1 77 ASP . 1 78 TYR . 1 79 ASP . 1 80 PRO . 1 81 ASN . 1 82 GLU . 1 83 LYS . 1 84 SER . 1 85 LYS . 1 86 HIS . 1 87 LYS . 1 88 PHE . 1 89 MET . 1 90 VAL . 1 91 GLN . 1 92 SER . 1 93 MET . 1 94 PHE . 1 95 ALA . 1 96 PRO . 1 97 PRO . 1 98 ASP . 1 99 THR . 1 100 SER . 1 101 ASP . 1 102 MET . 1 103 GLU . 1 104 ALA . 1 105 VAL . 1 106 TRP . 1 107 LYS . 1 108 GLU . 1 109 ALA . 1 110 LYS . 1 111 PRO . 1 112 GLU . 1 113 ASP . 1 114 LEU . 1 115 MET . 1 116 ASP . 1 117 SER . 1 118 LYS . 1 119 LEU . 1 120 ARG . 1 121 CYS . 1 122 VAL . 1 123 PHE . 1 124 GLU . 1 125 LEU . 1 126 PRO . 1 127 ALA . 1 128 GLU . 1 129 ASN . 1 130 ALA . 1 131 LYS . 1 132 PRO . 1 133 HIS . 1 134 ASP . 1 135 VAL . 1 136 GLU . 1 137 ILE . 1 138 ASN . 1 139 LYS . 1 140 ILE . 1 141 MET . 1 142 PRO . 1 143 THR . 1 144 SER . 1 145 ALA . 1 146 SER . 1 147 LYS . 1 148 THR . 1 149 GLU . 1 150 ALA . 1 151 PRO . 1 152 VAL . 1 153 ALA . 1 154 ALA . 1 155 LYS . 1 156 PRO . 1 157 LEU . 1 158 THR . 1 159 SER . 1 160 PRO . 1 161 LEU . 1 162 ASP . 1 163 ASP . 1 164 ALA . 1 165 GLU . 1 166 VAL . 1 167 LYS . 1 168 LYS . 1 169 VAL . 1 170 MET . 1 171 GLU . 1 172 GLU . 1 173 CYS . 1 174 ARG . 1 175 ARG . 1 176 LEU . 1 177 GLN . 1 178 GLY . 1 179 GLU . 1 180 VAL . 1 181 GLN . 1 182 ARG . 1 183 LEU . 1 184 ARG . 1 185 GLU . 1 186 GLU . 1 187 SER . 1 188 ARG . 1 189 GLN . 1 190 LEU . 1 191 LYS . 1 192 GLU . 1 193 GLU . 1 194 ASP . 1 195 GLY . 1 196 LEU . 1 197 ARG . 1 198 ALA . 1 199 ARG . 1 200 LYS . 1 201 ALA . 1 202 LEU . 1 203 PRO . 1 204 SER . 1 205 ASN . 1 206 SER . 1 207 PRO . 1 208 MET . 1 209 ALA . 1 210 ALA . 1 211 LEU . 1 212 ALA . 1 213 ALA . 1 214 SER . 1 215 GLY . 1 216 LYS . 1 217 GLU . 1 218 GLU . 1 219 GLY . 1 220 LEU . 1 221 SER . 1 222 ALA . 1 223 ARG . 1 224 LEU . 1 225 LEU . 1 226 ALA . 1 227 LEU . 1 228 VAL . 1 229 VAL . 1 230 LEU . 1 231 PHE . 1 232 PHE . 1 233 ILE . 1 234 VAL . 1 235 GLY . 1 236 VAL . 1 237 ILE . 1 238 ILE . 1 239 GLY . 1 240 LYS . 1 241 ILE . 1 242 ALA . 1 243 LEU . # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 . # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 ? ? ? A . A 1 2 ALA 2 ? ? ? A . A 1 3 LYS 3 ? ? ? A . A 1 4 VAL 4 ? ? ? A . A 1 5 GLU 5 ? ? ? A . A 1 6 GLN 6 ? ? ? A . A 1 7 VAL 7 ? ? ? A . A 1 8 LEU 8 ? ? ? A . A 1 9 SER 9 ? ? ? A . A 1 10 LEU 10 ? ? ? A . A 1 11 GLU 11 ? ? ? A . A 1 12 PRO 12 ? ? ? A . A 1 13 GLN 13 ? ? ? A . A 1 14 HIS 14 ? ? ? A . A 1 15 GLU 15 ? ? ? A . A 1 16 LEU 16 ? ? ? A . A 1 17 LYS 17 ? ? ? A . A 1 18 PHE 18 ? ? ? A . A 1 19 ARG 19 ? ? ? A . A 1 20 GLY 20 ? ? ? A . A 1 21 PRO 21 ? ? ? A . A 1 22 PHE 22 ? ? ? A . A 1 23 THR 23 ? ? ? A . A 1 24 ASP 24 ? ? ? A . A 1 25 VAL 25 ? ? ? A . A 1 26 VAL 26 ? ? ? A . A 1 27 THR 27 ? ? ? A . A 1 28 THR 28 ? ? ? A . A 1 29 ASN 29 ? ? ? A . A 1 30 LEU 30 ? ? ? A . A 1 31 LYS 31 ? ? ? A . A 1 32 LEU 32 ? ? ? A . A 1 33 GLY 33 ? ? ? A . A 1 34 ASN 34 ? ? ? A . A 1 35 PRO 35 ? ? ? A . A 1 36 THR 36 ? ? ? A . A 1 37 ASP 37 ? ? ? A . A 1 38 ARG 38 ? ? ? A . A 1 39 ASN 39 ? ? ? A . A 1 40 VAL 40 ? ? ? A . A 1 41 CYS 41 ? ? ? A . A 1 42 PHE 42 ? ? ? A . A 1 43 LYS 43 ? ? ? A . A 1 44 VAL 44 ? ? ? A . A 1 45 LYS 45 ? ? ? A . A 1 46 THR 46 ? ? ? A . A 1 47 THR 47 ? ? ? A . A 1 48 ALA 48 ? ? ? A . A 1 49 PRO 49 ? ? ? A . A 1 50 ARG 50 ? ? ? A . A 1 51 ARG 51 ? ? ? A . A 1 52 TYR 52 ? ? ? A . A 1 53 CYS 53 ? ? ? A . A 1 54 VAL 54 ? ? ? A . A 1 55 ARG 55 ? ? ? A . A 1 56 PRO 56 ? ? ? A . A 1 57 ASN 57 ? ? ? A . A 1 58 SER 58 ? ? ? A . A 1 59 GLY 59 ? ? ? A . A 1 60 VAL 60 ? ? ? A . A 1 61 ILE 61 ? ? ? A . A 1 62 ASP 62 ? ? ? A . A 1 63 ALA 63 ? ? ? A . A 1 64 GLY 64 ? ? ? A . A 1 65 ALA 65 ? ? ? A . A 1 66 SER 66 ? ? ? A . A 1 67 LEU 67 ? ? ? A . A 1 68 ASN 68 ? ? ? A . A 1 69 VAL 69 ? ? ? A . A 1 70 SER 70 ? ? ? A . A 1 71 VAL 71 ? ? ? A . A 1 72 MET 72 ? ? ? A . A 1 73 LEU 73 ? ? ? A . A 1 74 GLN 74 ? ? ? A . A 1 75 PRO 75 ? ? ? A . A 1 76 PHE 76 ? ? ? A . A 1 77 ASP 77 ? ? ? A . A 1 78 TYR 78 ? ? ? A . A 1 79 ASP 79 ? ? ? A . A 1 80 PRO 80 ? ? ? A . A 1 81 ASN 81 ? ? ? A . A 1 82 GLU 82 ? ? ? A . A 1 83 LYS 83 ? ? ? A . A 1 84 SER 84 ? ? ? A . A 1 85 LYS 85 ? ? ? A . A 1 86 HIS 86 ? ? ? A . A 1 87 LYS 87 ? ? ? A . A 1 88 PHE 88 ? ? ? A . A 1 89 MET 89 ? ? ? A . A 1 90 VAL 90 ? ? ? A . A 1 91 GLN 91 ? ? ? A . A 1 92 SER 92 ? ? ? A . A 1 93 MET 93 ? ? ? A . A 1 94 PHE 94 ? ? ? A . A 1 95 ALA 95 ? ? ? A . A 1 96 PRO 96 ? ? ? A . A 1 97 PRO 97 ? ? ? A . A 1 98 ASP 98 ? ? ? A . A 1 99 THR 99 ? ? ? A . A 1 100 SER 100 ? ? ? A . A 1 101 ASP 101 ? ? ? A . A 1 102 MET 102 ? ? ? A . A 1 103 GLU 103 ? ? ? A . A 1 104 ALA 104 ? ? ? A . A 1 105 VAL 105 ? ? ? A . A 1 106 TRP 106 ? ? ? A . A 1 107 LYS 107 ? ? ? A . A 1 108 GLU 108 ? ? ? A . A 1 109 ALA 109 ? ? ? A . A 1 110 LYS 110 ? ? ? A . A 1 111 PRO 111 ? ? ? A . A 1 112 GLU 112 ? ? ? A . A 1 113 ASP 113 ? ? ? A . A 1 114 LEU 114 ? ? ? A . A 1 115 MET 115 ? ? ? A . A 1 116 ASP 116 ? ? ? A . A 1 117 SER 117 ? ? ? A . A 1 118 LYS 118 ? ? ? A . A 1 119 LEU 119 ? ? ? A . A 1 120 ARG 120 ? ? ? A . A 1 121 CYS 121 ? ? ? A . A 1 122 VAL 122 ? ? ? A . A 1 123 PHE 123 ? ? ? A . A 1 124 GLU 124 ? ? ? A . A 1 125 LEU 125 ? ? ? A . A 1 126 PRO 126 ? ? ? A . A 1 127 ALA 127 ? ? ? A . A 1 128 GLU 128 ? ? ? A . A 1 129 ASN 129 ? ? ? A . A 1 130 ALA 130 ? ? ? A . A 1 131 LYS 131 ? ? ? A . A 1 132 PRO 132 ? ? ? A . A 1 133 HIS 133 ? ? ? A . A 1 134 ASP 134 ? ? ? A . A 1 135 VAL 135 ? ? ? A . A 1 136 GLU 136 ? ? ? A . A 1 137 ILE 137 ? ? ? A . A 1 138 ASN 138 ? ? ? A . A 1 139 LYS 139 ? ? ? A . A 1 140 ILE 140 ? ? ? A . A 1 141 MET 141 ? ? ? A . A 1 142 PRO 142 ? ? ? A . A 1 143 THR 143 ? ? ? A . A 1 144 SER 144 ? ? ? A . A 1 145 ALA 145 ? ? ? A . A 1 146 SER 146 ? ? ? A . A 1 147 LYS 147 ? ? ? A . A 1 148 THR 148 ? ? ? A . A 1 149 GLU 149 ? ? ? A . A 1 150 ALA 150 ? ? ? A . A 1 151 PRO 151 ? ? ? A . A 1 152 VAL 152 ? ? ? A . A 1 153 ALA 153 ? ? ? A . A 1 154 ALA 154 ? ? ? A . A 1 155 LYS 155 ? ? ? A . A 1 156 PRO 156 ? ? ? A . A 1 157 LEU 157 ? ? ? A . A 1 158 THR 158 ? ? ? A . A 1 159 SER 159 ? ? ? A . A 1 160 PRO 160 ? ? ? A . A 1 161 LEU 161 ? ? ? A . A 1 162 ASP 162 ? ? ? A . A 1 163 ASP 163 ? ? ? A . A 1 164 ALA 164 ? ? ? A . A 1 165 GLU 165 ? ? ? A . A 1 166 VAL 166 ? ? ? A . A 1 167 LYS 167 ? ? ? A . A 1 168 LYS 168 ? ? ? A . A 1 169 VAL 169 ? ? ? A . A 1 170 MET 170 170 MET MET A . A 1 171 GLU 171 171 GLU GLU A . A 1 172 GLU 172 172 GLU GLU A . A 1 173 CYS 173 173 CYS CYS A . A 1 174 ARG 174 174 ARG ARG A . A 1 175 ARG 175 175 ARG ARG A . A 1 176 LEU 176 176 LEU LEU A . A 1 177 GLN 177 177 GLN GLN A . A 1 178 GLY 178 178 GLY GLY A . A 1 179 GLU 179 179 GLU GLU A . A 1 180 VAL 180 180 VAL VAL A . A 1 181 GLN 181 181 GLN GLN A . A 1 182 ARG 182 182 ARG ARG A . A 1 183 LEU 183 183 LEU LEU A . A 1 184 ARG 184 184 ARG ARG A . A 1 185 GLU 185 185 GLU GLU A . A 1 186 GLU 186 186 GLU GLU A . A 1 187 SER 187 187 SER SER A . A 1 188 ARG 188 188 ARG ARG A . A 1 189 GLN 189 189 GLN GLN A . A 1 190 LEU 190 190 LEU LEU A . A 1 191 LYS 191 191 LYS LYS A . A 1 192 GLU 192 192 GLU GLU A . A 1 193 GLU 193 193 GLU GLU A . A 1 194 ASP 194 194 ASP ASP A . A 1 195 GLY 195 195 GLY GLY A . A 1 196 LEU 196 196 LEU LEU A . A 1 197 ARG 197 197 ARG ARG A . A 1 198 ALA 198 198 ALA ALA A . A 1 199 ARG 199 199 ARG ARG A . A 1 200 LYS 200 200 LYS LYS A . A 1 201 ALA 201 201 ALA ALA A . A 1 202 LEU 202 ? ? ? A . A 1 203 PRO 203 ? ? ? A . A 1 204 SER 204 ? ? ? A . A 1 205 ASN 205 ? ? ? A . A 1 206 SER 206 ? ? ? A . A 1 207 PRO 207 ? ? ? A . A 1 208 MET 208 ? ? ? A . A 1 209 ALA 209 ? ? ? A . A 1 210 ALA 210 ? ? ? A . A 1 211 LEU 211 ? ? ? A . A 1 212 ALA 212 ? ? ? A . A 1 213 ALA 213 ? ? ? A . A 1 214 SER 214 ? ? ? A . A 1 215 GLY 215 ? ? ? A . A 1 216 LYS 216 ? ? ? A . A 1 217 GLU 217 ? ? ? A . A 1 218 GLU 218 ? ? ? A . A 1 219 GLY 219 ? ? ? A . A 1 220 LEU 220 ? ? ? A . A 1 221 SER 221 ? ? ? A . A 1 222 ALA 222 ? ? ? A . A 1 223 ARG 223 ? ? ? A . A 1 224 LEU 224 ? ? ? A . A 1 225 LEU 225 ? ? ? A . A 1 226 ALA 226 ? ? ? A . A 1 227 LEU 227 ? ? ? A . A 1 228 VAL 228 ? ? ? A . A 1 229 VAL 229 ? ? ? A . A 1 230 LEU 230 ? ? ? A . A 1 231 PHE 231 ? ? ? A . A 1 232 PHE 232 ? ? ? A . A 1 233 ILE 233 ? ? ? A . A 1 234 VAL 234 ? ? ? A . A 1 235 GLY 235 ? ? ? A . A 1 236 VAL 236 ? ? ? A . A 1 237 ILE 237 ? ? ? A . A 1 238 ILE 238 ? ? ? A . A 1 239 GLY 239 ? ? ? A . A 1 240 LYS 240 ? ? ? A . A 1 241 ILE 241 ? ? ? A . A 1 242 ALA 242 ? ? ? A . A 1 243 LEU 243 ? ? ? A . # # loop_ _ma_data.id _ma_data.name _ma_data.content_type _ma_data.content_type_other_details 1 'GENERAL CONTROL PROTEIN GCN4 {PDB ID=5apt, label_asym_id=A, auth_asym_id=A, SMTL ID=5apt.1.A}' 'template structure' . 2 . target . 3 'Target-template alignment by HHblits to 5apt, label_asym_id=A' 'target-template alignment' . 4 'model 3' 'model coordinates' . 5 SMTL 'reference database' . 6 PDB 'reference database' . 7 'Template search output' other 'Results of the sequence search' # # loop_ _ma_data_group.ordinal_id _ma_data_group.group_id _ma_data_group.data_id 1 1 2 2 1 5 3 1 6 4 2 7 5 3 2 6 3 1 7 3 3 8 4 1 9 4 3 10 5 4 # # loop_ _ma_data_ref_db.data_id _ma_data_ref_db.name _ma_data_ref_db.location_url _ma_data_ref_db.version _ma_data_ref_db.release_date 5 SMTL https://swissmodel.expasy.org/templates/ . 2024-12-11 6 PDB https://www.wwpdb.org . 2024-12-06 # # loop_ _ma_target_entity.entity_id _ma_target_entity.data_id _ma_target_entity.origin 1 2 'reference database' # # loop_ _ma_target_entity_instance.asym_id _ma_target_entity_instance.entity_id _ma_target_entity_instance.details A 1 . # # loop_ _ma_template_trans_matrix.id _ma_template_trans_matrix.rot_matrix[1][1] _ma_template_trans_matrix.rot_matrix[2][1] _ma_template_trans_matrix.rot_matrix[3][1] _ma_template_trans_matrix.rot_matrix[1][2] _ma_template_trans_matrix.rot_matrix[2][2] _ma_template_trans_matrix.rot_matrix[3][2] _ma_template_trans_matrix.rot_matrix[1][3] _ma_template_trans_matrix.rot_matrix[2][3] _ma_template_trans_matrix.rot_matrix[3][3] _ma_template_trans_matrix.tr_vector[1] _ma_template_trans_matrix.tr_vector[2] _ma_template_trans_matrix.tr_vector[3] 1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0 0 0 # # loop_ _ma_template_details.ordinal_id _ma_template_details.template_id _ma_template_details.template_origin _ma_template_details.template_entity_type _ma_template_details.template_trans_matrix_id _ma_template_details.template_data_id _ma_template_details.target_asym_id _ma_template_details.template_label_asym_id _ma_template_details.template_label_entity_id _ma_template_details.template_model_num _ma_template_details.template_auth_asym_id 1 1 'reference database' polymer 1 1 A A 1 1 A # # loop_ _ma_template_poly.template_id _ma_template_poly.seq_one_letter_code _ma_template_poly.seq_one_letter_code_can 1 ;MKHHHHHHPMSDYDIPTTENLYFQGHMKQLEDKVEELLSKVYHLENEVARLKKLIENKADKADMKQLEDK VEELLSKVYHLENEVARLKKLVGER ; ;MKHHHHHHPMSDYDIPTTENLYFQGHMKQLEDKVEELLSKVYHLENEVARLKKLIENKADKADMKQLEDK VEELLSKVYHLENEVARLKKLVGER ; # # loop_ _ma_template_poly_segment.id _ma_template_poly_segment.template_id _ma_template_poly_segment.residue_number_begin _ma_template_poly_segment.residue_number_end 1 1 61 91 # # loop_ _ma_template_ref_db_details.template_id _ma_template_ref_db_details.db_name _ma_template_ref_db_details.db_name_other_details _ma_template_ref_db_details.db_accession_code _ma_template_ref_db_details.db_version_date 1 PDB . 5apt 2024-01-10 # # loop_ _ma_target_template_poly_mapping.id _ma_target_template_poly_mapping.template_segment_id _ma_target_template_poly_mapping.target_asym_id _ma_target_template_poly_mapping.target_seq_id_begin _ma_target_template_poly_mapping.target_seq_id_end 1 1 A 1 243 # # loop_ _ma_alignment_info.alignment_id _ma_alignment_info.data_id _ma_alignment_info.software_group_id _ma_alignment_info.alignment_length _ma_alignment_info.alignment_type _ma_alignment_info.alignment_mode 1 3 1 243 'target-template pairwise alignment' local # # loop_ _ma_alignment_details.ordinal_id _ma_alignment_details.alignment_id _ma_alignment_details.template_segment_id _ma_alignment_details.target_asym_id _ma_alignment_details.score_type _ma_alignment_details.score_type_other_details _ma_alignment_details.score_value _ma_alignment_details.percent_sequence_identity _ma_alignment_details.sequence_identity_denominator _ma_alignment_details.sequence_identity_denominator_other_details 1 1 1 A 'HHblits e-value' . 6.800 22.581 'Number of aligned residue pairs (not including the gaps)' . # # loop_ _ma_alignment.ordinal_id _ma_alignment.alignment_id _ma_alignment.target_template_flag _ma_alignment.sequence 1 1 1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSVMLQPFDYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVFELPAENAKPHDVEINKIMPTSASKTEAPVAAKPLTSPLDDAEVKKVMEECRRLQGEVQRLREESRQLKEEDGLRARKALPSNSPMAALAASGKEEGLSARLLALVVLFFIVGVIIGKIAL 2 1 2 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------KADMKQLEDKVEELLSKVYHLENE-VARLKKL------------------------------------------ # # loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.step_name _ma_protocol_step.details _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2 1 2 2 1 2 'template selection' 'template selection' 'Automatic template selection by SWISS-MODEL {QSQE=0.098}' 3 2 4 3 1 3 modeling 'homology modeling' 'SWISS-MODEL auto-model mode using ProMod3 on 5apt.1, oligomeric state (monomer) as predicted' 4 3 5 # # loop_ _ma_model_list.ordinal_id _ma_model_list.model_id _ma_model_list.model_group_id _ma_model_list.model_name _ma_model_list.model_group_name _ma_model_list.data_id _ma_model_list.model_type _ma_model_list.model_type_other_details 1 1 1 'model 3' . 4 'Homology model' . # # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.auth_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.label_entity_id _atom_site.auth_asym_id _atom_site.auth_comp_id _atom_site.B_iso_or_equiv _atom_site.pdbx_PDB_model_num ATOM 1 N N . MET 170 170 ? A 6.245 -4.531 22.430 1 1 A MET 0.720 1 ATOM 2 C CA . MET 170 170 ? A 5.128 -5.527 22.578 1 1 A MET 0.720 1 ATOM 3 C C . MET 170 170 ? A 4.833 -6.009 23.982 1 1 A MET 0.720 1 ATOM 4 O O . MET 170 170 ? A 3.673 -6.005 24.365 1 1 A MET 0.720 1 ATOM 5 C CB . MET 170 170 ? A 5.338 -6.718 21.611 1 1 A MET 0.720 1 ATOM 6 C CG . MET 170 170 ? A 5.210 -6.339 20.122 1 1 A MET 0.720 1 ATOM 7 S SD . MET 170 170 ? A 3.614 -5.556 19.711 1 1 A MET 0.720 1 ATOM 8 C CE . MET 170 170 ? A 2.550 -7.015 19.934 1 1 A MET 0.720 1 ATOM 9 N N . GLU 171 171 ? A 5.849 -6.364 24.808 1 1 A GLU 0.690 1 ATOM 10 C CA . GLU 171 171 ? A 5.611 -6.808 26.179 1 1 A GLU 0.690 1 ATOM 11 C C . GLU 171 171 ? A 4.868 -5.774 27.035 1 1 A GLU 0.690 1 ATOM 12 O O . GLU 171 171 ? A 3.877 -6.083 27.685 1 1 A GLU 0.690 1 ATOM 13 C CB . GLU 171 171 ? A 6.943 -7.254 26.830 1 1 A GLU 0.690 1 ATOM 14 C CG . GLU 171 171 ? A 6.837 -7.905 28.250 1 1 A GLU 0.690 1 ATOM 15 C CD . GLU 171 171 ? A 5.880 -9.098 28.466 1 1 A GLU 0.690 1 ATOM 16 O OE1 . GLU 171 171 ? A 5.208 -9.564 27.509 1 1 A GLU 0.690 1 ATOM 17 O OE2 . GLU 171 171 ? A 5.747 -9.554 29.632 1 1 A GLU 0.690 1 ATOM 18 N N . GLU 172 172 ? A 5.250 -4.473 26.951 1 1 A GLU 0.550 1 ATOM 19 C CA . GLU 172 172 ? A 4.519 -3.406 27.632 1 1 A GLU 0.550 1 ATOM 20 C C . GLU 172 172 ? A 3.060 -3.248 27.178 1 1 A GLU 0.550 1 ATOM 21 O O . GLU 172 172 ? A 2.142 -3.100 27.981 1 1 A GLU 0.550 1 ATOM 22 C CB . GLU 172 172 ? A 5.282 -2.060 27.539 1 1 A GLU 0.550 1 ATOM 23 C CG . GLU 172 172 ? A 4.693 -0.898 28.409 1 1 A GLU 0.550 1 ATOM 24 C CD . GLU 172 172 ? A 4.520 -1.130 29.923 1 1 A GLU 0.550 1 ATOM 25 O OE1 . GLU 172 172 ? A 4.923 -2.194 30.459 1 1 A GLU 0.550 1 ATOM 26 O OE2 . GLU 172 172 ? A 3.921 -0.254 30.595 1 1 A GLU 0.550 1 ATOM 27 N N . CYS 173 173 ? A 2.786 -3.352 25.854 1 1 A CYS 0.550 1 ATOM 28 C CA . CYS 173 173 ? A 1.435 -3.347 25.304 1 1 A CYS 0.550 1 ATOM 29 C C . CYS 173 173 ? A 0.596 -4.510 25.828 1 1 A CYS 0.550 1 ATOM 30 O O . CYS 173 173 ? A -0.562 -4.333 26.189 1 1 A CYS 0.550 1 ATOM 31 C CB . CYS 173 173 ? A 1.425 -3.333 23.745 1 1 A CYS 0.550 1 ATOM 32 S SG . CYS 173 173 ? A 2.273 -1.894 23.011 1 1 A CYS 0.550 1 ATOM 33 N N . ARG 174 174 ? A 1.182 -5.718 25.945 1 1 A ARG 0.550 1 ATOM 34 C CA . ARG 174 174 ? A 0.568 -6.871 26.576 1 1 A ARG 0.550 1 ATOM 35 C C . ARG 174 174 ? A 0.222 -6.658 28.050 1 1 A ARG 0.550 1 ATOM 36 O O . ARG 174 174 ? A -0.854 -7.039 28.513 1 1 A ARG 0.550 1 ATOM 37 C CB . ARG 174 174 ? A 1.503 -8.088 26.421 1 1 A ARG 0.550 1 ATOM 38 C CG . ARG 174 174 ? A 0.866 -9.414 26.864 1 1 A ARG 0.550 1 ATOM 39 C CD . ARG 174 174 ? A 1.781 -10.622 26.653 1 1 A ARG 0.550 1 ATOM 40 N NE . ARG 174 174 ? A 2.759 -10.650 27.789 1 1 A ARG 0.550 1 ATOM 41 C CZ . ARG 174 174 ? A 2.545 -11.240 28.970 1 1 A ARG 0.550 1 ATOM 42 N NH1 . ARG 174 174 ? A 1.361 -11.794 29.246 1 1 A ARG 0.550 1 ATOM 43 N NH2 . ARG 174 174 ? A 3.507 -11.227 29.887 1 1 A ARG 0.550 1 ATOM 44 N N . ARG 175 175 ? A 1.110 -6.000 28.824 1 1 A ARG 0.570 1 ATOM 45 C CA . ARG 175 175 ? A 0.826 -5.591 30.188 1 1 A ARG 0.570 1 ATOM 46 C C . ARG 175 175 ? A -0.354 -4.627 30.296 1 1 A ARG 0.570 1 ATOM 47 O O . ARG 175 175 ? A -1.236 -4.788 31.140 1 1 A ARG 0.570 1 ATOM 48 C CB . ARG 175 175 ? A 2.084 -4.950 30.815 1 1 A ARG 0.570 1 ATOM 49 C CG . ARG 175 175 ? A 1.940 -4.645 32.317 1 1 A ARG 0.570 1 ATOM 50 C CD . ARG 175 175 ? A 3.210 -4.062 32.947 1 1 A ARG 0.570 1 ATOM 51 N NE . ARG 175 175 ? A 3.258 -2.605 32.625 1 1 A ARG 0.570 1 ATOM 52 C CZ . ARG 175 175 ? A 2.655 -1.635 33.324 1 1 A ARG 0.570 1 ATOM 53 N NH1 . ARG 175 175 ? A 1.870 -1.920 34.365 1 1 A ARG 0.570 1 ATOM 54 N NH2 . ARG 175 175 ? A 2.816 -0.376 32.940 1 1 A ARG 0.570 1 ATOM 55 N N . LEU 176 176 ? A -0.420 -3.624 29.397 1 1 A LEU 0.600 1 ATOM 56 C CA . LEU 176 176 ? A -1.552 -2.724 29.265 1 1 A LEU 0.600 1 ATOM 57 C C . LEU 176 176 ? A -2.857 -3.419 28.881 1 1 A LEU 0.600 1 ATOM 58 O O . LEU 176 176 ? A -3.912 -3.135 29.444 1 1 A LEU 0.600 1 ATOM 59 C CB . LEU 176 176 ? A -1.222 -1.591 28.271 1 1 A LEU 0.600 1 ATOM 60 C CG . LEU 176 176 ? A -2.303 -0.498 28.128 1 1 A LEU 0.600 1 ATOM 61 C CD1 . LEU 176 176 ? A -2.743 0.107 29.475 1 1 A LEU 0.600 1 ATOM 62 C CD2 . LEU 176 176 ? A -1.803 0.607 27.185 1 1 A LEU 0.600 1 ATOM 63 N N . GLN 177 177 ? A -2.818 -4.401 27.954 1 1 A GLN 0.580 1 ATOM 64 C CA . GLN 177 177 ? A -3.955 -5.251 27.625 1 1 A GLN 0.580 1 ATOM 65 C C . GLN 177 177 ? A -4.488 -6.021 28.830 1 1 A GLN 0.580 1 ATOM 66 O O . GLN 177 177 ? A -5.697 -6.085 29.048 1 1 A GLN 0.580 1 ATOM 67 C CB . GLN 177 177 ? A -3.591 -6.230 26.479 1 1 A GLN 0.580 1 ATOM 68 C CG . GLN 177 177 ? A -3.401 -5.531 25.111 1 1 A GLN 0.580 1 ATOM 69 C CD . GLN 177 177 ? A -2.923 -6.506 24.034 1 1 A GLN 0.580 1 ATOM 70 O OE1 . GLN 177 177 ? A -2.282 -7.523 24.295 1 1 A GLN 0.580 1 ATOM 71 N NE2 . GLN 177 177 ? A -3.234 -6.181 22.755 1 1 A GLN 0.580 1 ATOM 72 N N . GLY 178 178 ? A -3.593 -6.568 29.682 1 1 A GLY 0.660 1 ATOM 73 C CA . GLY 178 178 ? A -3.976 -7.207 30.940 1 1 A GLY 0.660 1 ATOM 74 C C . GLY 178 178 ? A -4.565 -6.284 31.990 1 1 A GLY 0.660 1 ATOM 75 O O . GLY 178 178 ? A -5.484 -6.666 32.710 1 1 A GLY 0.660 1 ATOM 76 N N . GLU 179 179 ? A -4.089 -5.022 32.082 1 1 A GLU 0.630 1 ATOM 77 C CA . GLU 179 179 ? A -4.714 -3.982 32.899 1 1 A GLU 0.630 1 ATOM 78 C C . GLU 179 179 ? A -6.115 -3.620 32.404 1 1 A GLU 0.630 1 ATOM 79 O O . GLU 179 179 ? A -7.071 -3.516 33.170 1 1 A GLU 0.630 1 ATOM 80 C CB . GLU 179 179 ? A -3.820 -2.713 32.996 1 1 A GLU 0.630 1 ATOM 81 C CG . GLU 179 179 ? A -4.410 -1.524 33.816 1 1 A GLU 0.630 1 ATOM 82 C CD . GLU 179 179 ? A -4.704 -1.813 35.287 1 1 A GLU 0.630 1 ATOM 83 O OE1 . GLU 179 179 ? A -5.399 -0.971 35.922 1 1 A GLU 0.630 1 ATOM 84 O OE2 . GLU 179 179 ? A -4.289 -2.867 35.822 1 1 A GLU 0.630 1 ATOM 85 N N . VAL 180 180 ? A -6.313 -3.481 31.076 1 1 A VAL 0.660 1 ATOM 86 C CA . VAL 180 180 ? A -7.633 -3.268 30.485 1 1 A VAL 0.660 1 ATOM 87 C C . VAL 180 180 ? A -8.601 -4.428 30.742 1 1 A VAL 0.660 1 ATOM 88 O O . VAL 180 180 ? A -9.792 -4.222 30.991 1 1 A VAL 0.660 1 ATOM 89 C CB . VAL 180 180 ? A -7.536 -2.931 28.999 1 1 A VAL 0.660 1 ATOM 90 C CG1 . VAL 180 180 ? A -8.928 -2.857 28.325 1 1 A VAL 0.660 1 ATOM 91 C CG2 . VAL 180 180 ? A -6.812 -1.575 28.847 1 1 A VAL 0.660 1 ATOM 92 N N . GLN 181 181 ? A -8.110 -5.689 30.720 1 1 A GLN 0.630 1 ATOM 93 C CA . GLN 181 181 ? A -8.863 -6.858 31.157 1 1 A GLN 0.630 1 ATOM 94 C C . GLN 181 181 ? A -9.273 -6.789 32.617 1 1 A GLN 0.630 1 ATOM 95 O O . GLN 181 181 ? A -10.432 -7.044 32.941 1 1 A GLN 0.630 1 ATOM 96 C CB . GLN 181 181 ? A -8.065 -8.165 30.952 1 1 A GLN 0.630 1 ATOM 97 C CG . GLN 181 181 ? A -7.889 -8.558 29.473 1 1 A GLN 0.630 1 ATOM 98 C CD . GLN 181 181 ? A -7.024 -9.812 29.356 1 1 A GLN 0.630 1 ATOM 99 O OE1 . GLN 181 181 ? A -6.178 -10.119 30.193 1 1 A GLN 0.630 1 ATOM 100 N NE2 . GLN 181 181 ? A -7.239 -10.580 28.263 1 1 A GLN 0.630 1 ATOM 101 N N . ARG 182 182 ? A -8.344 -6.377 33.511 1 1 A ARG 0.610 1 ATOM 102 C CA . ARG 182 182 ? A -8.606 -6.156 34.924 1 1 A ARG 0.610 1 ATOM 103 C C . ARG 182 182 ? A -9.722 -5.144 35.132 1 1 A ARG 0.610 1 ATOM 104 O O . ARG 182 182 ? A -10.712 -5.427 35.801 1 1 A ARG 0.610 1 ATOM 105 C CB . ARG 182 182 ? A -7.313 -5.667 35.640 1 1 A ARG 0.610 1 ATOM 106 C CG . ARG 182 182 ? A -7.430 -5.501 37.170 1 1 A ARG 0.610 1 ATOM 107 C CD . ARG 182 182 ? A -6.167 -4.965 37.865 1 1 A ARG 0.610 1 ATOM 108 N NE . ARG 182 182 ? A -6.130 -3.488 37.723 1 1 A ARG 0.610 1 ATOM 109 C CZ . ARG 182 182 ? A -6.792 -2.617 38.505 1 1 A ARG 0.610 1 ATOM 110 N NH1 . ARG 182 182 ? A -7.607 -2.960 39.493 1 1 A ARG 0.610 1 ATOM 111 N NH2 . ARG 182 182 ? A -6.646 -1.322 38.211 1 1 A ARG 0.610 1 ATOM 112 N N . LEU 183 183 ? A -9.634 -3.978 34.457 1 1 A LEU 0.630 1 ATOM 113 C CA . LEU 183 183 ? A -10.654 -2.951 34.521 1 1 A LEU 0.630 1 ATOM 114 C C . LEU 183 183 ? A -12.034 -3.382 34.033 1 1 A LEU 0.630 1 ATOM 115 O O . LEU 183 183 ? A -13.047 -3.154 34.691 1 1 A LEU 0.630 1 ATOM 116 C CB . LEU 183 183 ? A -10.199 -1.729 33.687 1 1 A LEU 0.630 1 ATOM 117 C CG . LEU 183 183 ? A -11.164 -0.523 33.705 1 1 A LEU 0.630 1 ATOM 118 C CD1 . LEU 183 183 ? A -11.462 -0.049 35.139 1 1 A LEU 0.630 1 ATOM 119 C CD2 . LEU 183 183 ? A -10.614 0.628 32.848 1 1 A LEU 0.630 1 ATOM 120 N N . ARG 184 184 ? A -12.126 -4.051 32.864 1 1 A ARG 0.560 1 ATOM 121 C CA . ARG 184 184 ? A -13.396 -4.520 32.336 1 1 A ARG 0.560 1 ATOM 122 C C . ARG 184 184 ? A -14.066 -5.577 33.193 1 1 A ARG 0.560 1 ATOM 123 O O . ARG 184 184 ? A -15.284 -5.544 33.365 1 1 A ARG 0.560 1 ATOM 124 C CB . ARG 184 184 ? A -13.269 -5.024 30.886 1 1 A ARG 0.560 1 ATOM 125 C CG . ARG 184 184 ? A -13.009 -3.889 29.878 1 1 A ARG 0.560 1 ATOM 126 C CD . ARG 184 184 ? A -12.860 -4.423 28.457 1 1 A ARG 0.560 1 ATOM 127 N NE . ARG 184 184 ? A -12.631 -3.255 27.542 1 1 A ARG 0.560 1 ATOM 128 C CZ . ARG 184 184 ? A -12.329 -3.387 26.243 1 1 A ARG 0.560 1 ATOM 129 N NH1 . ARG 184 184 ? A -12.214 -4.590 25.689 1 1 A ARG 0.560 1 ATOM 130 N NH2 . ARG 184 184 ? A -12.147 -2.313 25.477 1 1 A ARG 0.560 1 ATOM 131 N N . GLU 185 185 ? A -13.283 -6.519 33.755 1 1 A GLU 0.600 1 ATOM 132 C CA . GLU 185 185 ? A -13.777 -7.495 34.701 1 1 A GLU 0.600 1 ATOM 133 C C . GLU 185 185 ? A -14.314 -6.859 35.987 1 1 A GLU 0.600 1 ATOM 134 O O . GLU 185 185 ? A -15.458 -7.103 36.371 1 1 A GLU 0.600 1 ATOM 135 C CB . GLU 185 185 ? A -12.655 -8.513 35.020 1 1 A GLU 0.600 1 ATOM 136 C CG . GLU 185 185 ? A -13.116 -9.675 35.931 1 1 A GLU 0.600 1 ATOM 137 C CD . GLU 185 185 ? A -14.252 -10.523 35.357 1 1 A GLU 0.600 1 ATOM 138 O OE1 . GLU 185 185 ? A -14.924 -11.174 36.201 1 1 A GLU 0.600 1 ATOM 139 O OE2 . GLU 185 185 ? A -14.470 -10.522 34.119 1 1 A GLU 0.600 1 ATOM 140 N N . GLU 186 186 ? A -13.546 -5.939 36.629 1 1 A GLU 0.590 1 ATOM 141 C CA . GLU 186 186 ? A -13.961 -5.203 37.821 1 1 A GLU 0.590 1 ATOM 142 C C . GLU 186 186 ? A -15.219 -4.365 37.570 1 1 A GLU 0.590 1 ATOM 143 O O . GLU 186 186 ? A -16.169 -4.390 38.349 1 1 A GLU 0.590 1 ATOM 144 C CB . GLU 186 186 ? A -12.810 -4.293 38.359 1 1 A GLU 0.590 1 ATOM 145 C CG . GLU 186 186 ? A -11.603 -5.066 38.970 1 1 A GLU 0.590 1 ATOM 146 C CD . GLU 186 186 ? A -10.387 -4.229 39.384 1 1 A GLU 0.590 1 ATOM 147 O OE1 . GLU 186 186 ? A -10.408 -2.968 39.335 1 1 A GLU 0.590 1 ATOM 148 O OE2 . GLU 186 186 ? A -9.359 -4.867 39.739 1 1 A GLU 0.590 1 ATOM 149 N N . SER 187 187 ? A -15.285 -3.651 36.423 1 1 A SER 0.590 1 ATOM 150 C CA . SER 187 187 ? A -16.461 -2.884 36.007 1 1 A SER 0.590 1 ATOM 151 C C . SER 187 187 ? A -17.704 -3.695 35.767 1 1 A SER 0.590 1 ATOM 152 O O . SER 187 187 ? A -18.808 -3.252 36.090 1 1 A SER 0.590 1 ATOM 153 C CB . SER 187 187 ? A -16.282 -2.116 34.687 1 1 A SER 0.590 1 ATOM 154 O OG . SER 187 187 ? A -15.372 -1.032 34.860 1 1 A SER 0.590 1 ATOM 155 N N . ARG 188 188 ? A -17.571 -4.892 35.160 1 1 A ARG 0.490 1 ATOM 156 C CA . ARG 188 188 ? A -18.655 -5.848 35.123 1 1 A ARG 0.490 1 ATOM 157 C C . ARG 188 188 ? A -19.066 -6.294 36.507 1 1 A ARG 0.490 1 ATOM 158 O O . ARG 188 188 ? A -20.193 -6.059 36.893 1 1 A ARG 0.490 1 ATOM 159 C CB . ARG 188 188 ? A -18.315 -7.065 34.244 1 1 A ARG 0.490 1 ATOM 160 C CG . ARG 188 188 ? A -18.375 -6.743 32.741 1 1 A ARG 0.490 1 ATOM 161 C CD . ARG 188 188 ? A -17.972 -7.907 31.834 1 1 A ARG 0.490 1 ATOM 162 N NE . ARG 188 188 ? A -19.068 -8.906 31.896 1 1 A ARG 0.490 1 ATOM 163 C CZ . ARG 188 188 ? A -19.154 -10.041 31.206 1 1 A ARG 0.490 1 ATOM 164 N NH1 . ARG 188 188 ? A -18.167 -10.370 30.375 1 1 A ARG 0.490 1 ATOM 165 N NH2 . ARG 188 188 ? A -20.177 -10.862 31.429 1 1 A ARG 0.490 1 ATOM 166 N N . GLN 189 189 ? A -18.152 -6.831 37.353 1 1 A GLN 0.520 1 ATOM 167 C CA . GLN 189 189 ? A -18.518 -7.302 38.678 1 1 A GLN 0.520 1 ATOM 168 C C . GLN 189 189 ? A -19.258 -6.267 39.526 1 1 A GLN 0.520 1 ATOM 169 O O . GLN 189 189 ? A -20.307 -6.556 40.107 1 1 A GLN 0.520 1 ATOM 170 C CB . GLN 189 189 ? A -17.250 -7.802 39.406 1 1 A GLN 0.520 1 ATOM 171 C CG . GLN 189 189 ? A -16.698 -9.110 38.792 1 1 A GLN 0.520 1 ATOM 172 C CD . GLN 189 189 ? A -15.388 -9.503 39.466 1 1 A GLN 0.520 1 ATOM 173 O OE1 . GLN 189 189 ? A -15.009 -8.978 40.515 1 1 A GLN 0.520 1 ATOM 174 N NE2 . GLN 189 189 ? A -14.645 -10.450 38.855 1 1 A GLN 0.520 1 ATOM 175 N N . LEU 190 190 ? A -18.760 -5.014 39.517 1 1 A LEU 0.500 1 ATOM 176 C CA . LEU 190 190 ? A -19.372 -3.850 40.122 1 1 A LEU 0.500 1 ATOM 177 C C . LEU 190 190 ? A -20.718 -3.400 39.555 1 1 A LEU 0.500 1 ATOM 178 O O . LEU 190 190 ? A -21.658 -3.132 40.298 1 1 A LEU 0.500 1 ATOM 179 C CB . LEU 190 190 ? A -18.381 -2.673 40.015 1 1 A LEU 0.500 1 ATOM 180 C CG . LEU 190 190 ? A -18.809 -1.392 40.757 1 1 A LEU 0.500 1 ATOM 181 C CD1 . LEU 190 190 ? A -18.966 -1.633 42.269 1 1 A LEU 0.500 1 ATOM 182 C CD2 . LEU 190 190 ? A -17.815 -0.259 40.461 1 1 A LEU 0.500 1 ATOM 183 N N . LYS 191 191 ? A -20.887 -3.287 38.222 1 1 A LYS 0.510 1 ATOM 184 C CA . LYS 191 191 ? A -22.113 -2.720 37.698 1 1 A LYS 0.510 1 ATOM 185 C C . LYS 191 191 ? A -23.143 -3.749 37.216 1 1 A LYS 0.510 1 ATOM 186 O O . LYS 191 191 ? A -24.341 -3.537 37.406 1 1 A LYS 0.510 1 ATOM 187 C CB . LYS 191 191 ? A -21.832 -1.750 36.540 1 1 A LYS 0.510 1 ATOM 188 C CG . LYS 191 191 ? A -23.133 -1.161 35.981 1 1 A LYS 0.510 1 ATOM 189 C CD . LYS 191 191 ? A -22.870 -0.134 34.896 1 1 A LYS 0.510 1 ATOM 190 C CE . LYS 191 191 ? A -24.164 0.425 34.320 1 1 A LYS 0.510 1 ATOM 191 N NZ . LYS 191 191 ? A -23.818 1.406 33.278 1 1 A LYS 0.510 1 ATOM 192 N N . GLU 192 192 ? A -22.683 -4.882 36.599 1 1 A GLU 0.460 1 ATOM 193 C CA . GLU 192 192 ? A -23.463 -5.954 35.928 1 1 A GLU 0.460 1 ATOM 194 C C . GLU 192 192 ? A -24.357 -6.532 36.964 1 1 A GLU 0.460 1 ATOM 195 O O . GLU 192 192 ? A -25.541 -6.795 36.760 1 1 A GLU 0.460 1 ATOM 196 C CB . GLU 192 192 ? A -22.564 -7.121 35.336 1 1 A GLU 0.460 1 ATOM 197 C CG . GLU 192 192 ? A -23.229 -8.306 34.522 1 1 A GLU 0.460 1 ATOM 198 C CD . GLU 192 192 ? A -22.290 -9.120 33.602 1 1 A GLU 0.460 1 ATOM 199 O OE1 . GLU 192 192 ? A -22.686 -10.161 33.008 1 1 A GLU 0.460 1 ATOM 200 O OE2 . GLU 192 192 ? A -21.137 -8.672 33.423 1 1 A GLU 0.460 1 ATOM 201 N N . GLU 193 193 ? A -23.753 -6.673 38.153 1 1 A GLU 0.550 1 ATOM 202 C CA . GLU 193 193 ? A -24.429 -7.267 39.253 1 1 A GLU 0.550 1 ATOM 203 C C . GLU 193 193 ? A -24.351 -6.606 40.637 1 1 A GLU 0.550 1 ATOM 204 O O . GLU 193 193 ? A -25.382 -6.537 41.304 1 1 A GLU 0.550 1 ATOM 205 C CB . GLU 193 193 ? A -23.819 -8.651 39.372 1 1 A GLU 0.550 1 ATOM 206 C CG . GLU 193 193 ? A -23.970 -9.635 38.190 1 1 A GLU 0.550 1 ATOM 207 C CD . GLU 193 193 ? A -23.475 -11.008 38.666 1 1 A GLU 0.550 1 ATOM 208 O OE1 . GLU 193 193 ? A -23.035 -11.811 37.823 1 1 A GLU 0.550 1 ATOM 209 O OE2 . GLU 193 193 ? A -23.530 -11.257 39.911 1 1 A GLU 0.550 1 ATOM 210 N N . ASP 194 194 ? A -23.190 -6.126 41.158 1 1 A ASP 0.540 1 ATOM 211 C CA . ASP 194 194 ? A -23.086 -5.685 42.548 1 1 A ASP 0.540 1 ATOM 212 C C . ASP 194 194 ? A -23.993 -4.504 42.908 1 1 A ASP 0.540 1 ATOM 213 O O . ASP 194 194 ? A -24.873 -4.595 43.767 1 1 A ASP 0.540 1 ATOM 214 C CB . ASP 194 194 ? A -21.597 -5.355 42.817 1 1 A ASP 0.540 1 ATOM 215 C CG . ASP 194 194 ? A -21.325 -4.953 44.252 1 1 A ASP 0.540 1 ATOM 216 O OD1 . ASP 194 194 ? A -21.033 -3.753 44.480 1 1 A ASP 0.540 1 ATOM 217 O OD2 . ASP 194 194 ? A -21.425 -5.861 45.112 1 1 A ASP 0.540 1 ATOM 218 N N . GLY 195 195 ? A -23.871 -3.395 42.154 1 1 A GLY 0.580 1 ATOM 219 C CA . GLY 195 195 ? A -24.691 -2.208 42.356 1 1 A GLY 0.580 1 ATOM 220 C C . GLY 195 195 ? A -26.128 -2.360 41.942 1 1 A GLY 0.580 1 ATOM 221 O O . GLY 195 195 ? A -27.009 -1.690 42.470 1 1 A GLY 0.580 1 ATOM 222 N N . LEU 196 196 ? A -26.414 -3.271 40.993 1 1 A LEU 0.520 1 ATOM 223 C CA . LEU 196 196 ? A -27.761 -3.683 40.635 1 1 A LEU 0.520 1 ATOM 224 C C . LEU 196 196 ? A -28.472 -4.430 41.764 1 1 A LEU 0.520 1 ATOM 225 O O . LEU 196 196 ? A -29.641 -4.175 42.053 1 1 A LEU 0.520 1 ATOM 226 C CB . LEU 196 196 ? A -27.753 -4.568 39.365 1 1 A LEU 0.520 1 ATOM 227 C CG . LEU 196 196 ? A -29.152 -5.032 38.892 1 1 A LEU 0.520 1 ATOM 228 C CD1 . LEU 196 196 ? A -30.080 -3.852 38.547 1 1 A LEU 0.520 1 ATOM 229 C CD2 . LEU 196 196 ? A -29.030 -6.000 37.706 1 1 A LEU 0.520 1 ATOM 230 N N . ARG 197 197 ? A -27.768 -5.366 42.444 1 1 A ARG 0.480 1 ATOM 231 C CA . ARG 197 197 ? A -28.259 -6.055 43.628 1 1 A ARG 0.480 1 ATOM 232 C C . ARG 197 197 ? A -28.473 -5.133 44.819 1 1 A ARG 0.480 1 ATOM 233 O O . ARG 197 197 ? A -29.499 -5.214 45.486 1 1 A ARG 0.480 1 ATOM 234 C CB . ARG 197 197 ? A -27.306 -7.190 44.080 1 1 A ARG 0.480 1 ATOM 235 C CG . ARG 197 197 ? A -27.381 -8.468 43.228 1 1 A ARG 0.480 1 ATOM 236 C CD . ARG 197 197 ? A -26.659 -9.659 43.866 1 1 A ARG 0.480 1 ATOM 237 N NE . ARG 197 197 ? A -25.181 -9.501 43.606 1 1 A ARG 0.480 1 ATOM 238 C CZ . ARG 197 197 ? A -24.572 -10.231 42.666 1 1 A ARG 0.480 1 ATOM 239 N NH1 . ARG 197 197 ? A -25.273 -11.022 41.846 1 1 A ARG 0.480 1 ATOM 240 N NH2 . ARG 197 197 ? A -23.259 -10.119 42.405 1 1 A ARG 0.480 1 ATOM 241 N N . ALA 198 198 ? A -27.511 -4.224 45.091 1 1 A ALA 0.610 1 ATOM 242 C CA . ALA 198 198 ? A -27.613 -3.224 46.139 1 1 A ALA 0.610 1 ATOM 243 C C . ALA 198 198 ? A -28.733 -2.209 45.933 1 1 A ALA 0.610 1 ATOM 244 O O . ALA 198 198 ? A -29.380 -1.793 46.880 1 1 A ALA 0.610 1 ATOM 245 C CB . ALA 198 198 ? A -26.288 -2.447 46.287 1 1 A ALA 0.610 1 ATOM 246 N N . ARG 199 199 ? A -28.968 -1.774 44.679 1 1 A ARG 0.450 1 ATOM 247 C CA . ARG 199 199 ? A -30.056 -0.890 44.291 1 1 A ARG 0.450 1 ATOM 248 C C . ARG 199 199 ? A -31.461 -1.469 44.429 1 1 A ARG 0.450 1 ATOM 249 O O . ARG 199 199 ? A -32.441 -0.746 44.579 1 1 A ARG 0.450 1 ATOM 250 C CB . ARG 199 199 ? A -29.863 -0.523 42.804 1 1 A ARG 0.450 1 ATOM 251 C CG . ARG 199 199 ? A -30.882 0.471 42.224 1 1 A ARG 0.450 1 ATOM 252 C CD . ARG 199 199 ? A -30.578 0.785 40.768 1 1 A ARG 0.450 1 ATOM 253 N NE . ARG 199 199 ? A -31.642 1.732 40.303 1 1 A ARG 0.450 1 ATOM 254 C CZ . ARG 199 199 ? A -31.703 2.217 39.057 1 1 A ARG 0.450 1 ATOM 255 N NH1 . ARG 199 199 ? A -30.796 1.869 38.151 1 1 A ARG 0.450 1 ATOM 256 N NH2 . ARG 199 199 ? A -32.675 3.055 38.703 1 1 A ARG 0.450 1 ATOM 257 N N . LYS 200 200 ? A -31.582 -2.795 44.255 1 1 A LYS 0.430 1 ATOM 258 C CA . LYS 200 200 ? A -32.789 -3.549 44.514 1 1 A LYS 0.430 1 ATOM 259 C C . LYS 200 200 ? A -33.151 -3.730 45.989 1 1 A LYS 0.430 1 ATOM 260 O O . LYS 200 200 ? A -34.331 -3.845 46.318 1 1 A LYS 0.430 1 ATOM 261 C CB . LYS 200 200 ? A -32.642 -4.946 43.880 1 1 A LYS 0.430 1 ATOM 262 C CG . LYS 200 200 ? A -33.918 -5.797 43.984 1 1 A LYS 0.430 1 ATOM 263 C CD . LYS 200 200 ? A -34.125 -6.703 42.770 1 1 A LYS 0.430 1 ATOM 264 C CE . LYS 200 200 ? A -34.624 -5.903 41.565 1 1 A LYS 0.430 1 ATOM 265 N NZ . LYS 200 200 ? A -34.691 -6.771 40.374 1 1 A LYS 0.430 1 ATOM 266 N N . ALA 201 201 ? A -32.125 -3.848 46.850 1 1 A ALA 0.480 1 ATOM 267 C CA . ALA 201 201 ? A -32.220 -3.995 48.287 1 1 A ALA 0.480 1 ATOM 268 C C . ALA 201 201 ? A -32.496 -2.689 49.090 1 1 A ALA 0.480 1 ATOM 269 O O . ALA 201 201 ? A -32.570 -1.584 48.494 1 1 A ALA 0.480 1 ATOM 270 C CB . ALA 201 201 ? A -30.879 -4.578 48.787 1 1 A ALA 0.480 1 ATOM 271 O OXT . ALA 201 201 ? A -32.634 -2.811 50.342 1 1 A ALA 0.480 1 # # loop_ _atom_type.symbol C N O S # # loop_ _ma_qa_metric.id _ma_qa_metric.name _ma_qa_metric.description _ma_qa_metric.type _ma_qa_metric.mode _ma_qa_metric.type_other_details _ma_qa_metric.software_group_id 1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' local . 5 2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' global . 5 3 GMQE 'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.' 'normalized score' global . 6 # # loop_ _ma_qa_metric_global.ordinal_id _ma_qa_metric_global.model_id _ma_qa_metric_global.metric_id _ma_qa_metric_global.metric_value 1 1 2 0.565 2 1 3 0.039 # # loop_ _ma_qa_metric_local.ordinal_id _ma_qa_metric_local.model_id _ma_qa_metric_local.label_asym_id _ma_qa_metric_local.label_seq_id _ma_qa_metric_local.label_comp_id _ma_qa_metric_local.metric_id _ma_qa_metric_local.metric_value 1 1 A 170 MET 1 0.720 2 1 A 171 GLU 1 0.690 3 1 A 172 GLU 1 0.550 4 1 A 173 CYS 1 0.550 5 1 A 174 ARG 1 0.550 6 1 A 175 ARG 1 0.570 7 1 A 176 LEU 1 0.600 8 1 A 177 GLN 1 0.580 9 1 A 178 GLY 1 0.660 10 1 A 179 GLU 1 0.630 11 1 A 180 VAL 1 0.660 12 1 A 181 GLN 1 0.630 13 1 A 182 ARG 1 0.610 14 1 A 183 LEU 1 0.630 15 1 A 184 ARG 1 0.560 16 1 A 185 GLU 1 0.600 17 1 A 186 GLU 1 0.590 18 1 A 187 SER 1 0.590 19 1 A 188 ARG 1 0.490 20 1 A 189 GLN 1 0.520 21 1 A 190 LEU 1 0.500 22 1 A 191 LYS 1 0.510 23 1 A 192 GLU 1 0.460 24 1 A 193 GLU 1 0.550 25 1 A 194 ASP 1 0.540 26 1 A 195 GLY 1 0.580 27 1 A 196 LEU 1 0.520 28 1 A 197 ARG 1 0.480 29 1 A 198 ALA 1 0.610 30 1 A 199 ARG 1 0.450 31 1 A 200 LYS 1 0.430 32 1 A 201 ALA 1 0.480 # # loop_ _pdbx_data_usage.id _pdbx_data_usage.type _pdbx_data_usage.details _pdbx_data_usage.url 1 license ;This SWISS-MODEL protein model is copyright. 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