data_SMR-68ce8b1b3c1762504214be075b089672_1
_entry.id SMR-68ce8b1b3c1762504214be075b089672_1
_struct.entry_id SMR-68ce8b1b3c1762504214be075b089672_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - Q86YL7 (isoform 2)/ PDPN_HUMAN, Podoplanin

Estimated model accuracy of this model is 0.036, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries Q86YL7 (isoform 2)'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 29192.147 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP PDPN_HUMAN Q86YL7 1
;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRYSP
;
Podoplanin
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 238 1 238
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . PDPN_HUMAN Q86YL7 Q86YL7-2 1 238 9606 'Homo sapiens (Human)' 2008-11-25
F6A351B5583198FC
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A
;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRYSP
;

;MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQES
NNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGL
TTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGI
IVGVLLAIGFIGAIIVVVMRKMSGRYSP
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 LEU .
1 3 THR .
1 4 PRO .
1 5 LEU .
1 6 GLY .
1 7 LYS .
1 8 PHE .
1 9 SER .
1 10 THR .
1 11 ALA .
1 12 LYS .
1 13 PHE .
1 14 ALA .
1 15 VAL .
1 16 ARG .
1 17 LEU .
1 18 PRO .
1 19 ARG .
1 20 VAL .
1 21 TRP .
1 22 GLU .
1 23 ALA .
1 24 ARG .
1 25 ALA .
1 26 PRO .
1 27 SER .
1 28 LEU .
1 29 SER .
1 30 GLY .
1 31 ALA .
1 32 PRO .
1 33 ALA .
1 34 PRO .
1 35 THR .
1 36 PRO .
1 37 PRO .
1 38 ALA .
1 39 PRO .
1 40 PRO .
1 41 PRO .
1 42 SER .
1 43 ARG .
1 44 SER .
1 45 SER .
1 46 ARG .
1 47 LEU .
1 48 GLY .
1 49 LEU .
1 50 TRP .
1 51 PRO .
1 52 ARG .
1 53 CYS .
1 54 PHE .
1 55 LEU .
1 56 ILE .
1 57 PHE .
1 58 PRO .
1 59 GLN .
1 60 LEU .
1 61 ARG .
1 62 ILE .
1 63 LEU .
1 64 LEU .
1 65 LEU .
1 66 GLY .
1 67 PRO .
1 68 GLN .
1 69 GLU .
1 70 SER .
1 71 ASN .
1 72 ASN .
1 73 SER .
1 74 THR .
1 75 GLY .
1 76 THR .
1 77 MET .
1 78 TRP .
1 79 LYS .
1 80 VAL .
1 81 SER .
1 82 ALA .
1 83 LEU .
1 84 LEU .
1 85 PHE .
1 86 VAL .
1 87 LEU .
1 88 GLY .
1 89 SER .
1 90 ALA .
1 91 SER .
1 92 LEU .
1 93 TRP .
1 94 VAL .
1 95 LEU .
1 96 ALA .
1 97 GLU .
1 98 GLY .
1 99 ALA .
1 100 SER .
1 101 THR .
1 102 GLY .
1 103 GLN .
1 104 PRO .
1 105 GLU .
1 106 ASP .
1 107 ASP .
1 108 THR .
1 109 GLU .
1 110 THR .
1 111 THR .
1 112 GLY .
1 113 LEU .
1 114 GLU .
1 115 GLY .
1 116 GLY .
1 117 VAL .
1 118 ALA .
1 119 MET .
1 120 PRO .
1 121 GLY .
1 122 ALA .
1 123 GLU .
1 124 ASP .
1 125 ASP .
1 126 VAL .
1 127 VAL .
1 128 THR .
1 129 PRO .
1 130 GLY .
1 131 THR .
1 132 SER .
1 133 GLU .
1 134 ASP .
1 135 ARG .
1 136 TYR .
1 137 LYS .
1 138 SER .
1 139 GLY .
1 140 LEU .
1 141 THR .
1 142 THR .
1 143 LEU .
1 144 VAL .
1 145 ALA .
1 146 THR .
1 147 SER .
1 148 VAL .
1 149 ASN .
1 150 SER .
1 151 VAL .
1 152 THR .
1 153 GLY .
1 154 ILE .
1 155 ARG .
1 156 ILE .
1 157 GLU .
1 158 ASP .
1 159 LEU .
1 160 PRO .
1 161 THR .
1 162 SER .
1 163 GLU .
1 164 SER .
1 165 THR .
1 166 VAL .
1 167 HIS .
1 168 ALA .
1 169 GLN .
1 170 GLU .
1 171 GLN .
1 172 SER .
1 173 PRO .
1 174 SER .
1 175 ALA .
1 176 THR .
1 177 ALA .
1 178 SER .
1 179 ASN .
1 180 VAL .
1 181 ALA .
1 182 THR .
1 183 SER .
1 184 HIS .
1 185 SER .
1 186 THR .
1 187 GLU .
1 188 LYS .
1 189 VAL .
1 190 ASP .
1 191 GLY .
1 192 ASP .
1 193 THR .
1 194 GLN .
1 195 THR .
1 196 THR .
1 197 VAL .
1 198 GLU .
1 199 LYS .
1 200 ASP .
1 201 GLY .
1 202 LEU .
1 203 SER .
1 204 THR .
1 205 VAL .
1 206 THR .
1 207 LEU .
1 208 VAL .
1 209 GLY .
1 210 ILE .
1 211 ILE .
1 212 VAL .
1 213 GLY .
1 214 VAL .
1 215 LEU .
1 216 LEU .
1 217 ALA .
1 218 ILE .
1 219 GLY .
1 220 PHE .
1 221 ILE .
1 222 GLY .
1 223 ALA .
1 224 ILE .
1 225 ILE .
1 226 VAL .
1 227 VAL .
1 228 VAL .
1 229 MET .
1 230 ARG .
1 231 LYS .
1 232 MET .
1 233 SER .
1 234 GLY .
1 235 ARG .
1 236 TYR .
1 237 SER .
1 238 PRO .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 LEU 2 ? ? ? A .
A 1 3 THR 3 ? ? ? A .
A 1 4 PRO 4 ? ? ? A .
A 1 5 LEU 5 ? ? ? A .
A 1 6 GLY 6 ? ? ? A .
A 1 7 LYS 7 ? ? ? A .
A 1 8 PHE 8 ? ? ? A .
A 1 9 SER 9 ? ? ? A .
A 1 10 THR 10 ? ? ? A .
A 1 11 ALA 11 ? ? ? A .
A 1 12 LYS 12 ? ? ? A .
A 1 13 PHE 13 ? ? ? A .
A 1 14 ALA 14 ? ? ? A .
A 1 15 VAL 15 ? ? ? A .
A 1 16 ARG 16 ? ? ? A .
A 1 17 LEU 17 ? ? ? A .
A 1 18 PRO 18 ? ? ? A .
A 1 19 ARG 19 ? ? ? A .
A 1 20 VAL 20 ? ? ? A .
A 1 21 TRP 21 ? ? ? A .
A 1 22 GLU 22 ? ? ? A .
A 1 23 ALA 23 ? ? ? A .
A 1 24 ARG 24 ? ? ? A .
A 1 25 ALA 25 ? ? ? A .
A 1 26 PRO 26 ? ? ? A .
A 1 27 SER 27 ? ? ? A .
A 1 28 LEU 28 ? ? ? A .
A 1 29 SER 29 ? ? ? A .
A 1 30 GLY 30 ? ? ? A .
A 1 31 ALA 31 ? ? ? A .
A 1 32 PRO 32 ? ? ? A .
A 1 33 ALA 33 ? ? ? A .
A 1 34 PRO 34 ? ? ? A .
A 1 35 THR 35 ? ? ? A .
A 1 36 PRO 36 ? ? ? A .
A 1 37 PRO 37 ? ? ? A .
A 1 38 ALA 38 ? ? ? A .
A 1 39 PRO 39 ? ? ? A .
A 1 40 PRO 40 ? ? ? A .
A 1 41 PRO 41 ? ? ? A .
A 1 42 SER 42 ? ? ? A .
A 1 43 ARG 43 ? ? ? A .
A 1 44 SER 44 ? ? ? A .
A 1 45 SER 45 ? ? ? A .
A 1 46 ARG 46 ? ? ? A .
A 1 47 LEU 47 ? ? ? A .
A 1 48 GLY 48 ? ? ? A .
A 1 49 LEU 49 ? ? ? A .
A 1 50 TRP 50 ? ? ? A .
A 1 51 PRO 51 ? ? ? A .
A 1 52 ARG 52 ? ? ? A .
A 1 53 CYS 53 ? ? ? A .
A 1 54 PHE 54 ? ? ? A .
A 1 55 LEU 55 ? ? ? A .
A 1 56 ILE 56 ? ? ? A .
A 1 57 PHE 57 ? ? ? A .
A 1 58 PRO 58 ? ? ? A .
A 1 59 GLN 59 ? ? ? A .
A 1 60 LEU 60 ? ? ? A .
A 1 61 ARG 61 ? ? ? A .
A 1 62 ILE 62 ? ? ? A .
A 1 63 LEU 63 ? ? ? A .
A 1 64 LEU 64 ? ? ? A .
A 1 65 LEU 65 ? ? ? A .
A 1 66 GLY 66 ? ? ? A .
A 1 67 PRO 67 ? ? ? A .
A 1 68 GLN 68 ? ? ? A .
A 1 69 GLU 69 ? ? ? A .
A 1 70 SER 70 ? ? ? A .
A 1 71 ASN 71 ? ? ? A .
A 1 72 ASN 72 ? ? ? A .
A 1 73 SER 73 ? ? ? A .
A 1 74 THR 74 ? ? ? A .
A 1 75 GLY 75 ? ? ? A .
A 1 76 THR 76 ? ? ? A .
A 1 77 MET 77 ? ? ? A .
A 1 78 TRP 78 ? ? ? A .
A 1 79 LYS 79 ? ? ? A .
A 1 80 VAL 80 ? ? ? A .
A 1 81 SER 81 ? ? ? A .
A 1 82 ALA 82 ? ? ? A .
A 1 83 LEU 83 ? ? ? A .
A 1 84 LEU 84 ? ? ? A .
A 1 85 PHE 85 ? ? ? A .
A 1 86 VAL 86 ? ? ? A .
A 1 87 LEU 87 ? ? ? A .
A 1 88 GLY 88 ? ? ? A .
A 1 89 SER 89 ? ? ? A .
A 1 90 ALA 90 ? ? ? A .
A 1 91 SER 91 ? ? ? A .
A 1 92 LEU 92 ? ? ? A .
A 1 93 TRP 93 ? ? ? A .
A 1 94 VAL 94 ? ? ? A .
A 1 95 LEU 95 ? ? ? A .
A 1 96 ALA 96 ? ? ? A .
A 1 97 GLU 97 ? ? ? A .
A 1 98 GLY 98 ? ? ? A .
A 1 99 ALA 99 ? ? ? A .
A 1 100 SER 100 ? ? ? A .
A 1 101 THR 101 ? ? ? A .
A 1 102 GLY 102 ? ? ? A .
A 1 103 GLN 103 ? ? ? A .
A 1 104 PRO 104 ? ? ? A .
A 1 105 GLU 105 ? ? ? A .
A 1 106 ASP 106 ? ? ? A .
A 1 107 ASP 107 ? ? ? A .
A 1 108 THR 108 ? ? ? A .
A 1 109 GLU 109 ? ? ? A .
A 1 110 THR 110 ? ? ? A .
A 1 111 THR 111 ? ? ? A .
A 1 112 GLY 112 ? ? ? A .
A 1 113 LEU 113 ? ? ? A .
A 1 114 GLU 114 ? ? ? A .
A 1 115 GLY 115 ? ? ? A .
A 1 116 GLY 116 ? ? ? A .
A 1 117 VAL 117 ? ? ? A .
A 1 118 ALA 118 ? ? ? A .
A 1 119 MET 119 ? ? ? A .
A 1 120 PRO 120 ? ? ? A .
A 1 121 GLY 121 ? ? ? A .
A 1 122 ALA 122 ? ? ? A .
A 1 123 GLU 123 ? ? ? A .
A 1 124 ASP 124 ? ? ? A .
A 1 125 ASP 125 ? ? ? A .
A 1 126 VAL 126 ? ? ? A .
A 1 127 VAL 127 ? ? ? A .
A 1 128 THR 128 ? ? ? A .
A 1 129 PRO 129 ? ? ? A .
A 1 130 GLY 130 ? ? ? A .
A 1 131 THR 131 ? ? ? A .
A 1 132 SER 132 ? ? ? A .
A 1 133 GLU 133 ? ? ? A .
A 1 134 ASP 134 ? ? ? A .
A 1 135 ARG 135 ? ? ? A .
A 1 136 TYR 136 ? ? ? A .
A 1 137 LYS 137 ? ? ? A .
A 1 138 SER 138 ? ? ? A .
A 1 139 GLY 139 ? ? ? A .
A 1 140 LEU 140 ? ? ? A .
A 1 141 THR 141 ? ? ? A .
A 1 142 THR 142 ? ? ? A .
A 1 143 LEU 143 ? ? ? A .
A 1 144 VAL 144 ? ? ? A .
A 1 145 ALA 145 ? ? ? A .
A 1 146 THR 146 ? ? ? A .
A 1 147 SER 147 ? ? ? A .
A 1 148 VAL 148 ? ? ? A .
A 1 149 ASN 149 ? ? ? A .
A 1 150 SER 150 ? ? ? A .
A 1 151 VAL 151 ? ? ? A .
A 1 152 THR 152 ? ? ? A .
A 1 153 GLY 153 ? ? ? A .
A 1 154 ILE 154 ? ? ? A .
A 1 155 ARG 155 ? ? ? A .
A 1 156 ILE 156 ? ? ? A .
A 1 157 GLU 157 ? ? ? A .
A 1 158 ASP 158 ? ? ? A .
A 1 159 LEU 159 ? ? ? A .
A 1 160 PRO 160 ? ? ? A .
A 1 161 THR 161 ? ? ? A .
A 1 162 SER 162 ? ? ? A .
A 1 163 GLU 163 ? ? ? A .
A 1 164 SER 164 ? ? ? A .
A 1 165 THR 165 ? ? ? A .
A 1 166 VAL 166 ? ? ? A .
A 1 167 HIS 167 ? ? ? A .
A 1 168 ALA 168 ? ? ? A .
A 1 169 GLN 169 ? ? ? A .
A 1 170 GLU 170 ? ? ? A .
A 1 171 GLN 171 ? ? ? A .
A 1 172 SER 172 ? ? ? A .
A 1 173 PRO 173 ? ? ? A .
A 1 174 SER 174 ? ? ? A .
A 1 175 ALA 175 ? ? ? A .
A 1 176 THR 176 ? ? ? A .
A 1 177 ALA 177 ? ? ? A .
A 1 178 SER 178 ? ? ? A .
A 1 179 ASN 179 ? ? ? A .
A 1 180 VAL 180 ? ? ? A .
A 1 181 ALA 181 ? ? ? A .
A 1 182 THR 182 ? ? ? A .
A 1 183 SER 183 ? ? ? A .
A 1 184 HIS 184 ? ? ? A .
A 1 185 SER 185 ? ? ? A .
A 1 186 THR 186 ? ? ? A .
A 1 187 GLU 187 ? ? ? A .
A 1 188 LYS 188 ? ? ? A .
A 1 189 VAL 189 ? ? ? A .
A 1 190 ASP 190 ? ? ? A .
A 1 191 GLY 191 ? ? ? A .
A 1 192 ASP 192 ? ? ? A .
A 1 193 THR 193 ? ? ? A .
A 1 194 GLN 194 ? ? ? A .
A 1 195 THR 195 ? ? ? A .
A 1 196 THR 196 ? ? ? A .
A 1 197 VAL 197 ? ? ? A .
A 1 198 GLU 198 ? ? ? A .
A 1 199 LYS 199 199 LYS LYS A .
A 1 200 ASP 200 200 ASP ASP A .
A 1 201 GLY 201 201 GLY GLY A .
A 1 202 LEU 202 202 LEU LEU A .
A 1 203 SER 203 203 SER SER A .
A 1 204 THR 204 204 THR THR A .
A 1 205 VAL 205 205 VAL VAL A .
A 1 206 THR 206 206 THR THR A .
A 1 207 LEU 207 207 LEU LEU A .
A 1 208 VAL 208 208 VAL VAL A .
A 1 209 GLY 209 209 GLY GLY A .
A 1 210 ILE 210 210 ILE ILE A .
A 1 211 ILE 211 211 ILE ILE A .
A 1 212 VAL 212 212 VAL VAL A .
A 1 213 GLY 213 213 GLY GLY A .
A 1 214 VAL 214 214 VAL VAL A .
A 1 215 LEU 215 215 LEU LEU A .
A 1 216 LEU 216 216 LEU LEU A .
A 1 217 ALA 217 217 ALA ALA A .
A 1 218 ILE 218 218 ILE ILE A .
A 1 219 GLY 219 219 GLY GLY A .
A 1 220 PHE 220 220 PHE PHE A .
A 1 221 ILE 221 221 ILE ILE A .
A 1 222 GLY 222 222 GLY GLY A .
A 1 223 ALA 223 223 ALA ALA A .
A 1 224 ILE 224 224 ILE ILE A .
A 1 225 ILE 225 225 ILE ILE A .
A 1 226 VAL 226 226 VAL VAL A .
A 1 227 VAL 227 227 VAL VAL A .
A 1 228 VAL 228 228 VAL VAL A .
A 1 229 MET 229 229 MET MET A .
A 1 230 ARG 230 230 ARG ARG A .
A 1 231 LYS 231 231 LYS LYS A .
A 1 232 MET 232 232 MET MET A .
A 1 233 SER 233 233 SER SER A .
A 1 234 GLY 234 234 GLY GLY A .
A 1 235 ARG 235 ? ? ? A .
A 1 236 TYR 236 ? ? ? A .
A 1 237 SER 237 ? ? ? A .
A 1 238 PRO 238 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Integrin beta-2 {PDB ID=5zaz, label_asym_id=A, auth_asym_id=A, SMTL ID=5zaz.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 5zaz, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-12-11
6 PDB https://www.wwpdb.org . 2024-12-06
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 PVDESRESVAGPNIAAIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFE
PVDESRESVAGPNIAAIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFE
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 9 44
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 5zaz 2024-05-15
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 238
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 238 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 0.005 22.222
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRSSRLGLWPRCFLIFPQLRILLLGPQESNNSTGTMWKVSALLFVLGSASLWVLAEGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGRYSP
2 1 2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VAGPNIAAIVGGTVAGIVLIGILLLVIWKALIHLSD----
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 5zaz.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . LYS 199 199 ? A 15.582 1.020 -19.623 1 1 A LYS 0.280 1
ATOM 2 C CA . LYS 199 199 ? A 16.747 1.559 -20.424 1 1 A LYS 0.280 1
ATOM 3 C C . LYS 199 199 ? A 17.058 0.613 -21.555 1 1 A LYS 0.280 1
ATOM 4 O O . LYS 199 199 ? A 16.847 -0.574 -21.347 1 1 A LYS 0.280 1
ATOM 5 C CB . LYS 199 199 ? A 18.016 1.647 -19.527 1 1 A LYS 0.280 1
ATOM 6 C CG . LYS 199 199 ? A 17.951 2.739 -18.449 1 1 A LYS 0.280 1
ATOM 7 C CD . LYS 199 199 ? A 19.263 2.842 -17.648 1 1 A LYS 0.280 1
ATOM 8 C CE . LYS 199 199 ? A 19.213 3.939 -16.573 1 1 A LYS 0.280 1
ATOM 9 N NZ . LYS 199 199 ? A 20.479 3.990 -15.807 1 1 A LYS 0.280 1
ATOM 10 N N . ASP 200 200 ? A 17.528 1.118 -22.719 1 1 A ASP 0.340 1
ATOM 11 C CA . ASP 200 200 ? A 17.845 0.322 -23.887 1 1 A ASP 0.340 1
ATOM 12 C C . ASP 200 200 ? A 18.534 1.293 -24.862 1 1 A ASP 0.340 1
ATOM 13 O O . ASP 200 200 ? A 19.725 1.230 -25.115 1 1 A ASP 0.340 1
ATOM 14 C CB . ASP 200 200 ? A 16.533 -0.314 -24.453 1 1 A ASP 0.340 1
ATOM 15 C CG . ASP 200 200 ? A 16.780 -1.343 -25.544 1 1 A ASP 0.340 1
ATOM 16 O OD1 . ASP 200 200 ? A 17.960 -1.651 -25.819 1 1 A ASP 0.340 1
ATOM 17 O OD2 . ASP 200 200 ? A 15.758 -1.829 -26.089 1 1 A ASP 0.340 1
ATOM 18 N N . GLY 201 201 ? A 17.783 2.327 -25.327 1 1 A GLY 0.300 1
ATOM 19 C CA . GLY 201 201 ? A 18.271 3.246 -26.357 1 1 A GLY 0.300 1
ATOM 20 C C . GLY 201 201 ? A 17.997 2.685 -27.720 1 1 A GLY 0.300 1
ATOM 21 O O . GLY 201 201 ? A 18.909 2.304 -28.444 1 1 A GLY 0.300 1
ATOM 22 N N . LEU 202 202 ? A 16.701 2.657 -28.100 1 1 A LEU 0.230 1
ATOM 23 C CA . LEU 202 202 ? A 16.190 2.321 -29.419 1 1 A LEU 0.230 1
ATOM 24 C C . LEU 202 202 ? A 16.762 3.181 -30.551 1 1 A LEU 0.230 1
ATOM 25 O O . LEU 202 202 ? A 17.655 4.008 -30.363 1 1 A LEU 0.230 1
ATOM 26 C CB . LEU 202 202 ? A 14.628 2.331 -29.440 1 1 A LEU 0.230 1
ATOM 27 C CG . LEU 202 202 ? A 14.006 1.425 -28.357 1 1 A LEU 0.230 1
ATOM 28 C CD1 . LEU 202 202 ? A 12.488 1.654 -28.281 1 1 A LEU 0.230 1
ATOM 29 C CD2 . LEU 202 202 ? A 14.345 -0.057 -28.603 1 1 A LEU 0.230 1
ATOM 30 N N . SER 203 203 ? A 16.234 3.020 -31.783 1 1 A SER 0.210 1
ATOM 31 C CA . SER 203 203 ? A 16.491 3.889 -32.936 1 1 A SER 0.210 1
ATOM 32 C C . SER 203 203 ? A 16.265 5.390 -32.686 1 1 A SER 0.210 1
ATOM 33 O O . SER 203 203 ? A 15.996 5.844 -31.571 1 1 A SER 0.210 1
ATOM 34 C CB . SER 203 203 ? A 15.695 3.439 -34.210 1 1 A SER 0.210 1
ATOM 35 O OG . SER 203 203 ? A 14.296 3.732 -34.119 1 1 A SER 0.210 1
ATOM 36 N N . THR 204 204 ? A 16.308 6.240 -33.735 1 1 A THR 0.430 1
ATOM 37 C CA . THR 204 204 ? A 16.010 7.677 -33.659 1 1 A THR 0.430 1
ATOM 38 C C . THR 204 204 ? A 14.694 8.010 -32.970 1 1 A THR 0.430 1
ATOM 39 O O . THR 204 204 ? A 14.576 9.035 -32.301 1 1 A THR 0.430 1
ATOM 40 C CB . THR 204 204 ? A 15.984 8.323 -35.036 1 1 A THR 0.430 1
ATOM 41 O OG1 . THR 204 204 ? A 17.221 8.078 -35.679 1 1 A THR 0.430 1
ATOM 42 C CG2 . THR 204 204 ? A 15.815 9.851 -34.962 1 1 A THR 0.430 1
ATOM 43 N N . VAL 205 205 ? A 13.701 7.084 -33.050 1 1 A VAL 0.510 1
ATOM 44 C CA . VAL 205 205 ? A 12.413 7.103 -32.360 1 1 A VAL 0.510 1
ATOM 45 C C . VAL 205 205 ? A 12.551 7.399 -30.878 1 1 A VAL 0.510 1
ATOM 46 O O . VAL 205 205 ? A 11.721 8.115 -30.330 1 1 A VAL 0.510 1
ATOM 47 C CB . VAL 205 205 ? A 11.657 5.776 -32.508 1 1 A VAL 0.510 1
ATOM 48 C CG1 . VAL 205 205 ? A 10.340 5.762 -31.685 1 1 A VAL 0.510 1
ATOM 49 C CG2 . VAL 205 205 ? A 11.328 5.562 -33.999 1 1 A VAL 0.510 1
ATOM 50 N N . THR 206 206 ? A 13.633 6.909 -30.207 1 1 A THR 0.580 1
ATOM 51 C CA . THR 206 206 ? A 13.954 7.230 -28.812 1 1 A THR 0.580 1
ATOM 52 C C . THR 206 206 ? A 13.915 8.722 -28.561 1 1 A THR 0.580 1
ATOM 53 O O . THR 206 206 ? A 13.114 9.200 -27.779 1 1 A THR 0.580 1
ATOM 54 C CB . THR 206 206 ? A 15.345 6.749 -28.380 1 1 A THR 0.580 1
ATOM 55 O OG1 . THR 206 206 ? A 15.430 5.344 -28.430 1 1 A THR 0.580 1
ATOM 56 C CG2 . THR 206 206 ? A 15.691 7.078 -26.922 1 1 A THR 0.580 1
ATOM 57 N N . LEU 207 207 ? A 14.714 9.529 -29.302 1 1 A LEU 0.590 1
ATOM 58 C CA . LEU 207 207 ? A 14.675 10.972 -29.151 1 1 A LEU 0.590 1
ATOM 59 C C . LEU 207 207 ? A 13.362 11.575 -29.591 1 1 A LEU 0.590 1
ATOM 60 O O . LEU 207 207 ? A 12.807 12.407 -28.891 1 1 A LEU 0.590 1
ATOM 61 C CB . LEU 207 207 ? A 15.807 11.662 -29.936 1 1 A LEU 0.590 1
ATOM 62 C CG . LEU 207 207 ? A 17.211 11.367 -29.377 1 1 A LEU 0.590 1
ATOM 63 C CD1 . LEU 207 207 ? A 18.260 11.938 -30.342 1 1 A LEU 0.590 1
ATOM 64 C CD2 . LEU 207 207 ? A 17.404 11.949 -27.961 1 1 A LEU 0.590 1
ATOM 65 N N . VAL 208 208 ? A 12.806 11.128 -30.741 1 1 A VAL 0.620 1
ATOM 66 C CA . VAL 208 208 ? A 11.566 11.672 -31.289 1 1 A VAL 0.620 1
ATOM 67 C C . VAL 208 208 ? A 10.403 11.571 -30.311 1 1 A VAL 0.620 1
ATOM 68 O O . VAL 208 208 ? A 9.713 12.553 -30.055 1 1 A VAL 0.620 1
ATOM 69 C CB . VAL 208 208 ? A 11.161 10.936 -32.569 1 1 A VAL 0.620 1
ATOM 70 C CG1 . VAL 208 208 ? A 9.833 11.478 -33.151 1 1 A VAL 0.620 1
ATOM 71 C CG2 . VAL 208 208 ? A 12.278 11.082 -33.621 1 1 A VAL 0.620 1
ATOM 72 N N . GLY 209 209 ? A 10.223 10.373 -29.701 1 1 A GLY 0.690 1
ATOM 73 C CA . GLY 209 209 ? A 9.189 10.058 -28.725 1 1 A GLY 0.690 1
ATOM 74 C C . GLY 209 209 ? A 9.398 10.729 -27.394 1 1 A GLY 0.690 1
ATOM 75 O O . GLY 209 209 ? A 8.439 11.141 -26.738 1 1 A GLY 0.690 1
ATOM 76 N N . ILE 210 210 ? A 10.665 10.895 -26.965 1 1 A ILE 0.690 1
ATOM 77 C CA . ILE 210 210 ? A 11.027 11.687 -25.795 1 1 A ILE 0.690 1
ATOM 78 C C . ILE 210 210 ? A 10.670 13.157 -25.977 1 1 A ILE 0.690 1
ATOM 79 O O . ILE 210 210 ? A 10.015 13.736 -25.124 1 1 A ILE 0.690 1
ATOM 80 C CB . ILE 210 210 ? A 12.510 11.516 -25.436 1 1 A ILE 0.690 1
ATOM 81 C CG1 . ILE 210 210 ? A 12.735 10.090 -24.870 1 1 A ILE 0.690 1
ATOM 82 C CG2 . ILE 210 210 ? A 13.017 12.576 -24.419 1 1 A ILE 0.690 1
ATOM 83 C CD1 . ILE 210 210 ? A 14.220 9.706 -24.816 1 1 A ILE 0.690 1
ATOM 84 N N . ILE 211 211 ? A 11.024 13.793 -27.121 1 1 A ILE 0.700 1
ATOM 85 C CA . ILE 211 211 ? A 10.787 15.220 -27.348 1 1 A ILE 0.700 1
ATOM 86 C C . ILE 211 211 ? A 9.314 15.578 -27.333 1 1 A ILE 0.700 1
ATOM 87 O O . ILE 211 211 ? A 8.888 16.506 -26.642 1 1 A ILE 0.700 1
ATOM 88 C CB . ILE 211 211 ? A 11.367 15.661 -28.694 1 1 A ILE 0.700 1
ATOM 89 C CG1 . ILE 211 211 ? A 12.913 15.584 -28.662 1 1 A ILE 0.700 1
ATOM 90 C CG2 . ILE 211 211 ? A 10.908 17.098 -29.074 1 1 A ILE 0.700 1
ATOM 91 C CD1 . ILE 211 211 ? A 13.533 15.671 -30.064 1 1 A ILE 0.700 1
ATOM 92 N N . VAL 212 212 ? A 8.490 14.800 -28.074 1 1 A VAL 0.730 1
ATOM 93 C CA . VAL 212 212 ? A 7.048 14.970 -28.123 1 1 A VAL 0.730 1
ATOM 94 C C . VAL 212 212 ? A 6.434 14.752 -26.753 1 1 A VAL 0.730 1
ATOM 95 O O . VAL 212 212 ? A 5.620 15.543 -26.296 1 1 A VAL 0.730 1
ATOM 96 C CB . VAL 212 212 ? A 6.386 14.095 -29.204 1 1 A VAL 0.730 1
ATOM 97 C CG1 . VAL 212 212 ? A 6.628 12.591 -28.983 1 1 A VAL 0.730 1
ATOM 98 C CG2 . VAL 212 212 ? A 4.869 14.343 -29.268 1 1 A VAL 0.730 1
ATOM 99 N N . GLY 213 213 ? A 6.897 13.703 -26.025 1 1 A GLY 0.720 1
ATOM 100 C CA . GLY 213 213 ? A 6.375 13.344 -24.721 1 1 A GLY 0.720 1
ATOM 101 C C . GLY 213 213 ? A 6.684 14.373 -23.688 1 1 A GLY 0.720 1
ATOM 102 O O . GLY 213 213 ? A 5.809 14.720 -22.905 1 1 A GLY 0.720 1
ATOM 103 N N . VAL 214 214 ? A 7.907 14.942 -23.696 1 1 A VAL 0.730 1
ATOM 104 C CA . VAL 214 214 ? A 8.293 16.066 -22.857 1 1 A VAL 0.730 1
ATOM 105 C C . VAL 214 214 ? A 7.435 17.291 -23.133 1 1 A VAL 0.730 1
ATOM 106 O O . VAL 214 214 ? A 6.791 17.810 -22.234 1 1 A VAL 0.730 1
ATOM 107 C CB . VAL 214 214 ? A 9.785 16.395 -23.037 1 1 A VAL 0.730 1
ATOM 108 C CG1 . VAL 214 214 ? A 10.196 17.759 -22.439 1 1 A VAL 0.730 1
ATOM 109 C CG2 . VAL 214 214 ? A 10.603 15.295 -22.332 1 1 A VAL 0.730 1
ATOM 110 N N . LEU 215 215 ? A 7.337 17.747 -24.404 1 1 A LEU 0.730 1
ATOM 111 C CA . LEU 215 215 ? A 6.614 18.966 -24.729 1 1 A LEU 0.730 1
ATOM 112 C C . LEU 215 215 ? A 5.125 18.907 -24.418 1 1 A LEU 0.730 1
ATOM 113 O O . LEU 215 215 ? A 4.557 19.812 -23.807 1 1 A LEU 0.730 1
ATOM 114 C CB . LEU 215 215 ? A 6.777 19.273 -26.235 1 1 A LEU 0.730 1
ATOM 115 C CG . LEU 215 215 ? A 6.018 20.533 -26.718 1 1 A LEU 0.730 1
ATOM 116 C CD1 . LEU 215 215 ? A 6.514 21.820 -26.029 1 1 A LEU 0.730 1
ATOM 117 C CD2 . LEU 215 215 ? A 6.105 20.648 -28.246 1 1 A LEU 0.730 1
ATOM 118 N N . LEU 216 216 ? A 4.466 17.796 -24.808 1 1 A LEU 0.730 1
ATOM 119 C CA . LEU 216 216 ? A 3.074 17.535 -24.509 1 1 A LEU 0.730 1
ATOM 120 C C . LEU 216 216 ? A 2.825 17.388 -23.035 1 1 A LEU 0.730 1
ATOM 121 O O . LEU 216 216 ? A 1.838 17.914 -22.524 1 1 A LEU 0.730 1
ATOM 122 C CB . LEU 216 216 ? A 2.587 16.239 -25.185 1 1 A LEU 0.730 1
ATOM 123 C CG . LEU 216 216 ? A 2.474 16.326 -26.716 1 1 A LEU 0.730 1
ATOM 124 C CD1 . LEU 216 216 ? A 2.116 14.933 -27.247 1 1 A LEU 0.730 1
ATOM 125 C CD2 . LEU 216 216 ? A 1.430 17.359 -27.176 1 1 A LEU 0.730 1
ATOM 126 N N . ALA 217 217 ? A 3.732 16.700 -22.299 1 1 A ALA 0.740 1
ATOM 127 C CA . ALA 217 217 ? A 3.650 16.609 -20.864 1 1 A ALA 0.740 1
ATOM 128 C C . ALA 217 217 ? A 3.674 17.990 -20.221 1 1 A ALA 0.740 1
ATOM 129 O O . ALA 217 217 ? A 2.753 18.347 -19.532 1 1 A ALA 0.740 1
ATOM 130 C CB . ALA 217 217 ? A 4.793 15.735 -20.294 1 1 A ALA 0.740 1
ATOM 131 N N . ILE 218 218 ? A 4.676 18.851 -20.558 1 1 A ILE 0.720 1
ATOM 132 C CA . ILE 218 218 ? A 4.797 20.188 -19.977 1 1 A ILE 0.720 1
ATOM 133 C C . ILE 218 218 ? A 3.573 21.035 -20.273 1 1 A ILE 0.720 1
ATOM 134 O O . ILE 218 218 ? A 3.044 21.706 -19.389 1 1 A ILE 0.720 1
ATOM 135 C CB . ILE 218 218 ? A 6.054 20.904 -20.472 1 1 A ILE 0.720 1
ATOM 136 C CG1 . ILE 218 218 ? A 7.328 20.123 -20.076 1 1 A ILE 0.720 1
ATOM 137 C CG2 . ILE 218 218 ? A 6.156 22.342 -19.898 1 1 A ILE 0.720 1
ATOM 138 C CD1 . ILE 218 218 ? A 8.471 20.397 -21.058 1 1 A ILE 0.720 1
ATOM 139 N N . GLY 219 219 ? A 3.053 20.967 -21.519 1 1 A GLY 0.730 1
ATOM 140 C CA . GLY 219 219 ? A 1.863 21.692 -21.939 1 1 A GLY 0.730 1
ATOM 141 C C . GLY 219 219 ? A 0.607 21.273 -21.225 1 1 A GLY 0.730 1
ATOM 142 O O . GLY 219 219 ? A -0.090 22.116 -20.673 1 1 A GLY 0.730 1
ATOM 143 N N . PHE 220 220 ? A 0.283 19.965 -21.176 1 1 A PHE 0.710 1
ATOM 144 C CA . PHE 220 220 ? A -0.853 19.454 -20.421 1 1 A PHE 0.710 1
ATOM 145 C C . PHE 220 220 ? A -0.731 19.627 -18.920 1 1 A PHE 0.710 1
ATOM 146 O O . PHE 220 220 ? A -1.698 20.004 -18.262 1 1 A PHE 0.710 1
ATOM 147 C CB . PHE 220 220 ? A -1.108 17.951 -20.710 1 1 A PHE 0.710 1
ATOM 148 C CG . PHE 220 220 ? A -1.622 17.717 -22.108 1 1 A PHE 0.710 1
ATOM 149 C CD1 . PHE 220 220 ? A -2.606 18.536 -22.700 1 1 A PHE 0.710 1
ATOM 150 C CD2 . PHE 220 220 ? A -1.161 16.600 -22.824 1 1 A PHE 0.710 1
ATOM 151 C CE1 . PHE 220 220 ? A -3.082 18.265 -23.989 1 1 A PHE 0.710 1
ATOM 152 C CE2 . PHE 220 220 ? A -1.648 16.316 -24.106 1 1 A PHE 0.710 1
ATOM 153 C CZ . PHE 220 220 ? A -2.603 17.155 -24.693 1 1 A PHE 0.710 1
ATOM 154 N N . ILE 221 221 ? A 0.465 19.384 -18.337 1 1 A ILE 0.730 1
ATOM 155 C CA . ILE 221 221 ? A 0.730 19.604 -16.923 1 1 A ILE 0.730 1
ATOM 156 C C . ILE 221 221 ? A 0.542 21.056 -16.573 1 1 A ILE 0.730 1
ATOM 157 O O . ILE 221 221 ? A -0.256 21.385 -15.709 1 1 A ILE 0.730 1
ATOM 158 C CB . ILE 221 221 ? A 2.153 19.176 -16.544 1 1 A ILE 0.730 1
ATOM 159 C CG1 . ILE 221 221 ? A 2.252 17.631 -16.586 1 1 A ILE 0.730 1
ATOM 160 C CG2 . ILE 221 221 ? A 2.605 19.715 -15.157 1 1 A ILE 0.730 1
ATOM 161 C CD1 . ILE 221 221 ? A 3.703 17.129 -16.588 1 1 A ILE 0.730 1
ATOM 162 N N . GLY 222 222 ? A 1.201 21.986 -17.309 1 1 A GLY 0.730 1
ATOM 163 C CA . GLY 222 222 ? A 1.061 23.400 -17.029 1 1 A GLY 0.730 1
ATOM 164 C C . GLY 222 222 ? A -0.330 23.898 -17.277 1 1 A GLY 0.730 1
ATOM 165 O O . GLY 222 222 ? A -0.811 24.726 -16.541 1 1 A GLY 0.730 1
ATOM 166 N N . ALA 223 223 ? A -1.045 23.346 -18.283 1 1 A ALA 0.740 1
ATOM 167 C CA . ALA 223 223 ? A -2.426 23.698 -18.518 1 1 A ALA 0.740 1
ATOM 168 C C . ALA 223 223 ? A -3.350 23.328 -17.374 1 1 A ALA 0.740 1
ATOM 169 O O . ALA 223 223 ? A -4.032 24.189 -16.836 1 1 A ALA 0.740 1
ATOM 170 C CB . ALA 223 223 ? A -2.922 22.978 -19.788 1 1 A ALA 0.740 1
ATOM 171 N N . ILE 224 224 ? A -3.338 22.055 -16.905 1 1 A ILE 0.710 1
ATOM 172 C CA . ILE 224 224 ? A -4.161 21.633 -15.780 1 1 A ILE 0.710 1
ATOM 173 C C . ILE 224 224 ? A -3.775 22.394 -14.533 1 1 A ILE 0.710 1
ATOM 174 O O . ILE 224 224 ? A -4.631 22.956 -13.875 1 1 A ILE 0.710 1
ATOM 175 C CB . ILE 224 224 ? A -4.100 20.122 -15.550 1 1 A ILE 0.710 1
ATOM 176 C CG1 . ILE 224 224 ? A -4.752 19.406 -16.761 1 1 A ILE 0.710 1
ATOM 177 C CG2 . ILE 224 224 ? A -4.804 19.710 -14.224 1 1 A ILE 0.710 1
ATOM 178 C CD1 . ILE 224 224 ? A -4.478 17.897 -16.782 1 1 A ILE 0.710 1
ATOM 179 N N . ILE 225 225 ? A -2.460 22.526 -14.240 1 1 A ILE 0.710 1
ATOM 180 C CA . ILE 225 225 ? A -1.994 23.266 -13.078 1 1 A ILE 0.710 1
ATOM 181 C C . ILE 225 225 ? A -2.404 24.726 -13.117 1 1 A ILE 0.710 1
ATOM 182 O O . ILE 225 225 ? A -2.982 25.211 -12.156 1 1 A ILE 0.710 1
ATOM 183 C CB . ILE 225 225 ? A -0.477 23.135 -12.921 1 1 A ILE 0.710 1
ATOM 184 C CG1 . ILE 225 225 ? A -0.093 21.662 -12.599 1 1 A ILE 0.710 1
ATOM 185 C CG2 . ILE 225 225 ? A 0.111 24.114 -11.869 1 1 A ILE 0.710 1
ATOM 186 C CD1 . ILE 225 225 ? A -0.522 21.157 -11.212 1 1 A ILE 0.710 1
ATOM 187 N N . VAL 226 226 ? A -2.200 25.457 -14.236 1 1 A VAL 0.710 1
ATOM 188 C CA . VAL 226 226 ? A -2.572 26.863 -14.359 1 1 A VAL 0.710 1
ATOM 189 C C . VAL 226 226 ? A -4.065 27.068 -14.267 1 1 A VAL 0.710 1
ATOM 190 O O . VAL 226 226 ? A -4.532 27.948 -13.536 1 1 A VAL 0.710 1
ATOM 191 C CB . VAL 226 226 ? A -2.070 27.445 -15.685 1 1 A VAL 0.710 1
ATOM 192 C CG1 . VAL 226 226 ? A -2.729 28.791 -16.079 1 1 A VAL 0.710 1
ATOM 193 C CG2 . VAL 226 226 ? A -0.541 27.628 -15.574 1 1 A VAL 0.710 1
ATOM 194 N N . VAL 227 227 ? A -4.858 26.243 -14.987 1 1 A VAL 0.700 1
ATOM 195 C CA . VAL 227 227 ? A -6.308 26.310 -14.985 1 1 A VAL 0.700 1
ATOM 196 C C . VAL 227 227 ? A -6.854 26.007 -13.609 1 1 A VAL 0.700 1
ATOM 197 O O . VAL 227 227 ? A -7.624 26.793 -13.080 1 1 A VAL 0.700 1
ATOM 198 C CB . VAL 227 227 ? A -6.941 25.362 -16.005 1 1 A VAL 0.700 1
ATOM 199 C CG1 . VAL 227 227 ? A -8.485 25.311 -15.877 1 1 A VAL 0.700 1
ATOM 200 C CG2 . VAL 227 227 ? A -6.576 25.845 -17.425 1 1 A VAL 0.700 1
ATOM 201 N N . VAL 228 228 ? A -6.407 24.907 -12.956 1 1 A VAL 0.690 1
ATOM 202 C CA . VAL 228 228 ? A -6.798 24.551 -11.599 1 1 A VAL 0.690 1
ATOM 203 C C . VAL 228 228 ? A -6.369 25.605 -10.609 1 1 A VAL 0.690 1
ATOM 204 O O . VAL 228 228 ? A -7.175 26.037 -9.793 1 1 A VAL 0.690 1
ATOM 205 C CB . VAL 228 228 ? A -6.262 23.174 -11.190 1 1 A VAL 0.690 1
ATOM 206 C CG1 . VAL 228 228 ? A -6.344 22.892 -9.668 1 1 A VAL 0.690 1
ATOM 207 C CG2 . VAL 228 228 ? A -7.070 22.115 -11.972 1 1 A VAL 0.690 1
ATOM 208 N N . MET 229 229 ? A -5.122 26.114 -10.686 1 1 A MET 0.610 1
ATOM 209 C CA . MET 229 229 ? A -4.628 27.129 -9.782 1 1 A MET 0.610 1
ATOM 210 C C . MET 229 229 ? A -5.434 28.411 -9.835 1 1 A MET 0.610 1
ATOM 211 O O . MET 229 229 ? A -5.863 28.920 -8.818 1 1 A MET 0.610 1
ATOM 212 C CB . MET 229 229 ? A -3.158 27.469 -10.124 1 1 A MET 0.610 1
ATOM 213 C CG . MET 229 229 ? A -2.495 28.519 -9.212 1 1 A MET 0.610 1
ATOM 214 S SD . MET 229 229 ? A -0.776 28.885 -9.685 1 1 A MET 0.610 1
ATOM 215 C CE . MET 229 229 ? A -1.156 29.807 -11.208 1 1 A MET 0.610 1
ATOM 216 N N . ARG 230 230 ? A -5.720 28.936 -11.045 1 1 A ARG 0.540 1
ATOM 217 C CA . ARG 230 230 ? A -6.567 30.103 -11.196 1 1 A ARG 0.540 1
ATOM 218 C C . ARG 230 230 ? A -8.030 29.844 -10.873 1 1 A ARG 0.540 1
ATOM 219 O O . ARG 230 230 ? A -8.717 30.726 -10.376 1 1 A ARG 0.540 1
ATOM 220 C CB . ARG 230 230 ? A -6.460 30.661 -12.627 1 1 A ARG 0.540 1
ATOM 221 C CG . ARG 230 230 ? A -5.072 31.239 -12.965 1 1 A ARG 0.540 1
ATOM 222 C CD . ARG 230 230 ? A -5.040 31.728 -14.411 1 1 A ARG 0.540 1
ATOM 223 N NE . ARG 230 230 ? A -3.673 32.285 -14.679 1 1 A ARG 0.540 1
ATOM 224 C CZ . ARG 230 230 ? A -3.277 32.710 -15.886 1 1 A ARG 0.540 1
ATOM 225 N NH1 . ARG 230 230 ? A -4.095 32.656 -16.931 1 1 A ARG 0.540 1
ATOM 226 N NH2 . ARG 230 230 ? A -2.051 33.198 -16.060 1 1 A ARG 0.540 1
ATOM 227 N N . LYS 231 231 ? A -8.545 28.632 -11.163 1 1 A LYS 0.560 1
ATOM 228 C CA . LYS 231 231 ? A -9.899 28.230 -10.845 1 1 A LYS 0.560 1
ATOM 229 C C . LYS 231 231 ? A -10.181 28.086 -9.356 1 1 A LYS 0.560 1
ATOM 230 O O . LYS 231 231 ? A -11.217 28.511 -8.876 1 1 A LYS 0.560 1
ATOM 231 C CB . LYS 231 231 ? A -10.207 26.878 -11.528 1 1 A LYS 0.560 1
ATOM 232 C CG . LYS 231 231 ? A -11.649 26.396 -11.347 1 1 A LYS 0.560 1
ATOM 233 C CD . LYS 231 231 ? A -11.922 25.115 -12.141 1 1 A LYS 0.560 1
ATOM 234 C CE . LYS 231 231 ? A -13.368 24.649 -11.962 1 1 A LYS 0.560 1
ATOM 235 N NZ . LYS 231 231 ? A -13.607 23.416 -12.739 1 1 A LYS 0.560 1
ATOM 236 N N . MET 232 232 ? A -9.253 27.451 -8.602 1 1 A MET 0.440 1
ATOM 237 C CA . MET 232 232 ? A -9.354 27.291 -7.164 1 1 A MET 0.440 1
ATOM 238 C C . MET 232 232 ? A -8.982 28.543 -6.380 1 1 A MET 0.440 1
ATOM 239 O O . MET 232 232 ? A -9.435 28.720 -5.259 1 1 A MET 0.440 1
ATOM 240 C CB . MET 232 232 ? A -8.405 26.157 -6.684 1 1 A MET 0.440 1
ATOM 241 C CG . MET 232 232 ? A -8.791 24.746 -7.180 1 1 A MET 0.440 1
ATOM 242 S SD . MET 232 232 ? A -10.488 24.219 -6.773 1 1 A MET 0.440 1
ATOM 243 C CE . MET 232 232 ? A -10.284 24.186 -4.966 1 1 A MET 0.440 1
ATOM 244 N N . SER 233 233 ? A -8.117 29.418 -6.951 1 1 A SER 0.430 1
ATOM 245 C CA . SER 233 233 ? A -7.742 30.705 -6.358 1 1 A SER 0.430 1
ATOM 246 C C . SER 233 233 ? A -8.783 31.806 -6.569 1 1 A SER 0.430 1
ATOM 247 O O . SER 233 233 ? A -8.756 32.829 -5.902 1 1 A SER 0.430 1
ATOM 248 C CB . SER 233 233 ? A -6.403 31.221 -6.972 1 1 A SER 0.430 1
ATOM 249 O OG . SER 233 233 ? A -5.804 32.295 -6.244 1 1 A SER 0.430 1
ATOM 250 N N . GLY 234 234 ? A -9.699 31.602 -7.545 1 1 A GLY 0.370 1
ATOM 251 C CA . GLY 234 234 ? A -10.836 32.476 -7.808 1 1 A GLY 0.370 1
ATOM 252 C C . GLY 234 234 ? A -11.959 32.558 -6.761 1 1 A GLY 0.370 1
ATOM 253 O O . GLY 234 234 ? A -11.978 31.795 -5.763 1 1 A GLY 0.370 1
ATOM 254 O OXT . GLY 234 234 ? A -12.860 33.411 -7.002 1 1 A GLY 0.370 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.594
2 1 3 0.036
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 199 LYS 1 0.280
2 1 A 200 ASP 1 0.340
3 1 A 201 GLY 1 0.300
4 1 A 202 LEU 1 0.230
5 1 A 203 SER 1 0.210
6 1 A 204 THR 1 0.430
7 1 A 205 VAL 1 0.510
8 1 A 206 THR 1 0.580
9 1 A 207 LEU 1 0.590
10 1 A 208 VAL 1 0.620
11 1 A 209 GLY 1 0.690
12 1 A 210 ILE 1 0.690
13 1 A 211 ILE 1 0.700
14 1 A 212 VAL 1 0.730
15 1 A 213 GLY 1 0.720
16 1 A 214 VAL 1 0.730
17 1 A 215 LEU 1 0.730
18 1 A 216 LEU 1 0.730
19 1 A 217 ALA 1 0.740
20 1 A 218 ILE 1 0.720
21 1 A 219 GLY 1 0.730
22 1 A 220 PHE 1 0.710
23 1 A 221 ILE 1 0.730
24 1 A 222 GLY 1 0.730
25 1 A 223 ALA 1 0.740
26 1 A 224 ILE 1 0.710
27 1 A 225 ILE 1 0.710
28 1 A 226 VAL 1 0.710
29 1 A 227 VAL 1 0.700
30 1 A 228 VAL 1 0.690
31 1 A 229 MET 1 0.610
32 1 A 230 ARG 1 0.540
33 1 A 231 LYS 1 0.560
34 1 A 232 MET 1 0.440
35 1 A 233 SER 1 0.430
36 1 A 234 GLY 1 0.370
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
1 license
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