data_SMR-342b963d41096f34508df3c01a1a4a8c_2
_entry.id SMR-342b963d41096f34508df3c01a1a4a8c_2
_struct.entry_id SMR-342b963d41096f34508df3c01a1a4a8c_2
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - A0A0B5J9Z5/ A0A0B5J9Z5_NYCPR, Tumor necrosis factor
  - A9LMQ0/ A9LMQ0_CANLF, Tumor necrosis factor
  - P51742/ TNFA_CANLF, Tumor necrosis factor

Estimated model accuracy of this model is 0.01, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries A0A0B5J9Z5, A9LMQ0, P51742'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 29649.958 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP TNFA_CANLF P51742 1
;MSTESMIRDVELAEEPLPKKAGGPPGSRRCFCLSLFSFLLVAGATTLFCLLHFGVIGPQREELPNGLQLI
SPLAQTVKSSSRTPSDKPVAHVVANPEAEGQLQWLSRRANALLANGVELTDNQLIVPSDGLYLIYSQVLF
KGQGCPSTHVLLTHTISRFAVSYQTKVNLLSAIKSPCQRETPEGTEAKPWYEPIYLGGVFQLEKGDRLSA
EINLPNYLDFAESGQVYFGIIAL
;
'Tumor necrosis factor'
2 1 UNP A9LMQ0_CANLF A9LMQ0 1
;MSTESMIRDVELAEEPLPKKAGGPPGSRRCFCLSLFSFLLVAGATTLFCLLHFGVIGPQREELPNGLQLI
SPLAQTVKSSSRTPSDKPVAHVVANPEAEGQLQWLSRRANALLANGVELTDNQLIVPSDGLYLIYSQVLF
KGQGCPSTHVLLTHTISRFAVSYQTKVNLLSAIKSPCQRETPEGTEAKPWYEPIYLGGVFQLEKGDRLSA
EINLPNYLDFAESGQVYFGIIAL
;
'Tumor necrosis factor'
3 1 UNP A0A0B5J9Z5_NYCPR A0A0B5J9Z5 1
;MSTESMIRDVELAEEPLPKKAGGPPGSRRCFCLSLFSFLLVAGATTLFCLLHFGVIGPQREELPNGLQLI
SPLAQTVKSSSRTPSDKPVAHVVANPEAEGQLQWLSRRANALLANGVELTDNQLIVPSDGLYLIYSQVLF
KGQGCPSTHVLLTHTISRFAVSYQTKVNLLSAIKSPCQRETPEGTEAKPWYEPIYLGGVFQLEKGDRLSA
EINLPNYLDFAESGQVYFGIIAL
;
'Tumor necrosis factor'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 233 1 233
2 2 1 233 1 233
3 3 1 233 1 233
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . TNFA_CANLF P51742 . 1 233 9615
'Canis lupus familiaris (Dog) (Canis familiaris)' 1996-10-01 7B2588FBC8B25340
1 UNP . A9LMQ0_CANLF A9LMQ0 . 1 233 9615
'Canis lupus familiaris (Dog) (Canis familiaris)' 2008-02-05 7B2588FBC8B25340
1 UNP . A0A0B5J9Z5_NYCPR A0A0B5J9Z5 . 1 233 34880
'Nyctereutes procyonoides (Raccoon dog) (Canis procyonoides)' 2015-04-01
7B2588FBC8B25340
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A
;MSTESMIRDVELAEEPLPKKAGGPPGSRRCFCLSLFSFLLVAGATTLFCLLHFGVIGPQREELPNGLQLI
SPLAQTVKSSSRTPSDKPVAHVVANPEAEGQLQWLSRRANALLANGVELTDNQLIVPSDGLYLIYSQVLF
KGQGCPSTHVLLTHTISRFAVSYQTKVNLLSAIKSPCQRETPEGTEAKPWYEPIYLGGVFQLEKGDRLSA
EINLPNYLDFAESGQVYFGIIAL
;

;MSTESMIRDVELAEEPLPKKAGGPPGSRRCFCLSLFSFLLVAGATTLFCLLHFGVIGPQREELPNGLQLI
SPLAQTVKSSSRTPSDKPVAHVVANPEAEGQLQWLSRRANALLANGVELTDNQLIVPSDGLYLIYSQVLF
KGQGCPSTHVLLTHTISRFAVSYQTKVNLLSAIKSPCQRETPEGTEAKPWYEPIYLGGVFQLEKGDRLSA
EINLPNYLDFAESGQVYFGIIAL
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 SER .
1 3 THR .
1 4 GLU .
1 5 SER .
1 6 MET .
1 7 ILE .
1 8 ARG .
1 9 ASP .
1 10 VAL .
1 11 GLU .
1 12 LEU .
1 13 ALA .
1 14 GLU .
1 15 GLU .
1 16 PRO .
1 17 LEU .
1 18 PRO .
1 19 LYS .
1 20 LYS .
1 21 ALA .
1 22 GLY .
1 23 GLY .
1 24 PRO .
1 25 PRO .
1 26 GLY .
1 27 SER .
1 28 ARG .
1 29 ARG .
1 30 CYS .
1 31 PHE .
1 32 CYS .
1 33 LEU .
1 34 SER .
1 35 LEU .
1 36 PHE .
1 37 SER .
1 38 PHE .
1 39 LEU .
1 40 LEU .
1 41 VAL .
1 42 ALA .
1 43 GLY .
1 44 ALA .
1 45 THR .
1 46 THR .
1 47 LEU .
1 48 PHE .
1 49 CYS .
1 50 LEU .
1 51 LEU .
1 52 HIS .
1 53 PHE .
1 54 GLY .
1 55 VAL .
1 56 ILE .
1 57 GLY .
1 58 PRO .
1 59 GLN .
1 60 ARG .
1 61 GLU .
1 62 GLU .
1 63 LEU .
1 64 PRO .
1 65 ASN .
1 66 GLY .
1 67 LEU .
1 68 GLN .
1 69 LEU .
1 70 ILE .
1 71 SER .
1 72 PRO .
1 73 LEU .
1 74 ALA .
1 75 GLN .
1 76 THR .
1 77 VAL .
1 78 LYS .
1 79 SER .
1 80 SER .
1 81 SER .
1 82 ARG .
1 83 THR .
1 84 PRO .
1 85 SER .
1 86 ASP .
1 87 LYS .
1 88 PRO .
1 89 VAL .
1 90 ALA .
1 91 HIS .
1 92 VAL .
1 93 VAL .
1 94 ALA .
1 95 ASN .
1 96 PRO .
1 97 GLU .
1 98 ALA .
1 99 GLU .
1 100 GLY .
1 101 GLN .
1 102 LEU .
1 103 GLN .
1 104 TRP .
1 105 LEU .
1 106 SER .
1 107 ARG .
1 108 ARG .
1 109 ALA .
1 110 ASN .
1 111 ALA .
1 112 LEU .
1 113 LEU .
1 114 ALA .
1 115 ASN .
1 116 GLY .
1 117 VAL .
1 118 GLU .
1 119 LEU .
1 120 THR .
1 121 ASP .
1 122 ASN .
1 123 GLN .
1 124 LEU .
1 125 ILE .
1 126 VAL .
1 127 PRO .
1 128 SER .
1 129 ASP .
1 130 GLY .
1 131 LEU .
1 132 TYR .
1 133 LEU .
1 134 ILE .
1 135 TYR .
1 136 SER .
1 137 GLN .
1 138 VAL .
1 139 LEU .
1 140 PHE .
1 141 LYS .
1 142 GLY .
1 143 GLN .
1 144 GLY .
1 145 CYS .
1 146 PRO .
1 147 SER .
1 148 THR .
1 149 HIS .
1 150 VAL .
1 151 LEU .
1 152 LEU .
1 153 THR .
1 154 HIS .
1 155 THR .
1 156 ILE .
1 157 SER .
1 158 ARG .
1 159 PHE .
1 160 ALA .
1 161 VAL .
1 162 SER .
1 163 TYR .
1 164 GLN .
1 165 THR .
1 166 LYS .
1 167 VAL .
1 168 ASN .
1 169 LEU .
1 170 LEU .
1 171 SER .
1 172 ALA .
1 173 ILE .
1 174 LYS .
1 175 SER .
1 176 PRO .
1 177 CYS .
1 178 GLN .
1 179 ARG .
1 180 GLU .
1 181 THR .
1 182 PRO .
1 183 GLU .
1 184 GLY .
1 185 THR .
1 186 GLU .
1 187 ALA .
1 188 LYS .
1 189 PRO .
1 190 TRP .
1 191 TYR .
1 192 GLU .
1 193 PRO .
1 194 ILE .
1 195 TYR .
1 196 LEU .
1 197 GLY .
1 198 GLY .
1 199 VAL .
1 200 PHE .
1 201 GLN .
1 202 LEU .
1 203 GLU .
1 204 LYS .
1 205 GLY .
1 206 ASP .
1 207 ARG .
1 208 LEU .
1 209 SER .
1 210 ALA .
1 211 GLU .
1 212 ILE .
1 213 ASN .
1 214 LEU .
1 215 PRO .
1 216 ASN .
1 217 TYR .
1 218 LEU .
1 219 ASP .
1 220 PHE .
1 221 ALA .
1 222 GLU .
1 223 SER .
1 224 GLY .
1 225 GLN .
1 226 VAL .
1 227 TYR .
1 228 PHE .
1 229 GLY .
1 230 ILE .
1 231 ILE .
1 232 ALA .
1 233 LEU .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 SER 2 ? ? ? A .
A 1 3 THR 3 ? ? ? A .
A 1 4 GLU 4 ? ? ? A .
A 1 5 SER 5 ? ? ? A .
A 1 6 MET 6 ? ? ? A .
A 1 7 ILE 7 ? ? ? A .
A 1 8 ARG 8 ? ? ? A .
A 1 9 ASP 9 ? ? ? A .
A 1 10 VAL 10 ? ? ? A .
A 1 11 GLU 11 ? ? ? A .
A 1 12 LEU 12 ? ? ? A .
A 1 13 ALA 13 ? ? ? A .
A 1 14 GLU 14 ? ? ? A .
A 1 15 GLU 15 ? ? ? A .
A 1 16 PRO 16 ? ? ? A .
A 1 17 LEU 17 ? ? ? A .
A 1 18 PRO 18 ? ? ? A .
A 1 19 LYS 19 ? ? ? A .
A 1 20 LYS 20 ? ? ? A .
A 1 21 ALA 21 ? ? ? A .
A 1 22 GLY 22 ? ? ? A .
A 1 23 GLY 23 ? ? ? A .
A 1 24 PRO 24 ? ? ? A .
A 1 25 PRO 25 ? ? ? A .
A 1 26 GLY 26 ? ? ? A .
A 1 27 SER 27 ? ? ? A .
A 1 28 ARG 28 28 ARG ARG A .
A 1 29 ARG 29 29 ARG ARG A .
A 1 30 CYS 30 30 CYS CYS A .
A 1 31 PHE 31 31 PHE PHE A .
A 1 32 CYS 32 32 CYS CYS A .
A 1 33 LEU 33 33 LEU LEU A .
A 1 34 SER 34 34 SER SER A .
A 1 35 LEU 35 35 LEU LEU A .
A 1 36 PHE 36 36 PHE PHE A .
A 1 37 SER 37 37 SER SER A .
A 1 38 PHE 38 38 PHE PHE A .
A 1 39 LEU 39 39 LEU LEU A .
A 1 40 LEU 40 40 LEU LEU A .
A 1 41 VAL 41 41 VAL VAL A .
A 1 42 ALA 42 42 ALA ALA A .
A 1 43 GLY 43 43 GLY GLY A .
A 1 44 ALA 44 44 ALA ALA A .
A 1 45 THR 45 45 THR THR A .
A 1 46 THR 46 46 THR THR A .
A 1 47 LEU 47 47 LEU LEU A .
A 1 48 PHE 48 48 PHE PHE A .
A 1 49 CYS 49 49 CYS CYS A .
A 1 50 LEU 50 50 LEU LEU A .
A 1 51 LEU 51 51 LEU LEU A .
A 1 52 HIS 52 52 HIS HIS A .
A 1 53 PHE 53 53 PHE PHE A .
A 1 54 GLY 54 54 GLY GLY A .
A 1 55 VAL 55 55 VAL VAL A .
A 1 56 ILE 56 56 ILE ILE A .
A 1 57 GLY 57 57 GLY GLY A .
A 1 58 PRO 58 58 PRO PRO A .
A 1 59 GLN 59 59 GLN GLN A .
A 1 60 ARG 60 ? ? ? A .
A 1 61 GLU 61 ? ? ? A .
A 1 62 GLU 62 ? ? ? A .
A 1 63 LEU 63 ? ? ? A .
A 1 64 PRO 64 ? ? ? A .
A 1 65 ASN 65 ? ? ? A .
A 1 66 GLY 66 ? ? ? A .
A 1 67 LEU 67 ? ? ? A .
A 1 68 GLN 68 ? ? ? A .
A 1 69 LEU 69 ? ? ? A .
A 1 70 ILE 70 ? ? ? A .
A 1 71 SER 71 ? ? ? A .
A 1 72 PRO 72 ? ? ? A .
A 1 73 LEU 73 ? ? ? A .
A 1 74 ALA 74 ? ? ? A .
A 1 75 GLN 75 ? ? ? A .
A 1 76 THR 76 ? ? ? A .
A 1 77 VAL 77 ? ? ? A .
A 1 78 LYS 78 ? ? ? A .
A 1 79 SER 79 ? ? ? A .
A 1 80 SER 80 ? ? ? A .
A 1 81 SER 81 ? ? ? A .
A 1 82 ARG 82 ? ? ? A .
A 1 83 THR 83 ? ? ? A .
A 1 84 PRO 84 ? ? ? A .
A 1 85 SER 85 ? ? ? A .
A 1 86 ASP 86 ? ? ? A .
A 1 87 LYS 87 ? ? ? A .
A 1 88 PRO 88 ? ? ? A .
A 1 89 VAL 89 ? ? ? A .
A 1 90 ALA 90 ? ? ? A .
A 1 91 HIS 91 ? ? ? A .
A 1 92 VAL 92 ? ? ? A .
A 1 93 VAL 93 ? ? ? A .
A 1 94 ALA 94 ? ? ? A .
A 1 95 ASN 95 ? ? ? A .
A 1 96 PRO 96 ? ? ? A .
A 1 97 GLU 97 ? ? ? A .
A 1 98 ALA 98 ? ? ? A .
A 1 99 GLU 99 ? ? ? A .
A 1 100 GLY 100 ? ? ? A .
A 1 101 GLN 101 ? ? ? A .
A 1 102 LEU 102 ? ? ? A .
A 1 103 GLN 103 ? ? ? A .
A 1 104 TRP 104 ? ? ? A .
A 1 105 LEU 105 ? ? ? A .
A 1 106 SER 106 ? ? ? A .
A 1 107 ARG 107 ? ? ? A .
A 1 108 ARG 108 ? ? ? A .
A 1 109 ALA 109 ? ? ? A .
A 1 110 ASN 110 ? ? ? A .
A 1 111 ALA 111 ? ? ? A .
A 1 112 LEU 112 ? ? ? A .
A 1 113 LEU 113 ? ? ? A .
A 1 114 ALA 114 ? ? ? A .
A 1 115 ASN 115 ? ? ? A .
A 1 116 GLY 116 ? ? ? A .
A 1 117 VAL 117 ? ? ? A .
A 1 118 GLU 118 ? ? ? A .
A 1 119 LEU 119 ? ? ? A .
A 1 120 THR 120 ? ? ? A .
A 1 121 ASP 121 ? ? ? A .
A 1 122 ASN 122 ? ? ? A .
A 1 123 GLN 123 ? ? ? A .
A 1 124 LEU 124 ? ? ? A .
A 1 125 ILE 125 ? ? ? A .
A 1 126 VAL 126 ? ? ? A .
A 1 127 PRO 127 ? ? ? A .
A 1 128 SER 128 ? ? ? A .
A 1 129 ASP 129 ? ? ? A .
A 1 130 GLY 130 ? ? ? A .
A 1 131 LEU 131 ? ? ? A .
A 1 132 TYR 132 ? ? ? A .
A 1 133 LEU 133 ? ? ? A .
A 1 134 ILE 134 ? ? ? A .
A 1 135 TYR 135 ? ? ? A .
A 1 136 SER 136 ? ? ? A .
A 1 137 GLN 137 ? ? ? A .
A 1 138 VAL 138 ? ? ? A .
A 1 139 LEU 139 ? ? ? A .
A 1 140 PHE 140 ? ? ? A .
A 1 141 LYS 141 ? ? ? A .
A 1 142 GLY 142 ? ? ? A .
A 1 143 GLN 143 ? ? ? A .
A 1 144 GLY 144 ? ? ? A .
A 1 145 CYS 145 ? ? ? A .
A 1 146 PRO 146 ? ? ? A .
A 1 147 SER 147 ? ? ? A .
A 1 148 THR 148 ? ? ? A .
A 1 149 HIS 149 ? ? ? A .
A 1 150 VAL 150 ? ? ? A .
A 1 151 LEU 151 ? ? ? A .
A 1 152 LEU 152 ? ? ? A .
A 1 153 THR 153 ? ? ? A .
A 1 154 HIS 154 ? ? ? A .
A 1 155 THR 155 ? ? ? A .
A 1 156 ILE 156 ? ? ? A .
A 1 157 SER 157 ? ? ? A .
A 1 158 ARG 158 ? ? ? A .
A 1 159 PHE 159 ? ? ? A .
A 1 160 ALA 160 ? ? ? A .
A 1 161 VAL 161 ? ? ? A .
A 1 162 SER 162 ? ? ? A .
A 1 163 TYR 163 ? ? ? A .
A 1 164 GLN 164 ? ? ? A .
A 1 165 THR 165 ? ? ? A .
A 1 166 LYS 166 ? ? ? A .
A 1 167 VAL 167 ? ? ? A .
A 1 168 ASN 168 ? ? ? A .
A 1 169 LEU 169 ? ? ? A .
A 1 170 LEU 170 ? ? ? A .
A 1 171 SER 171 ? ? ? A .
A 1 172 ALA 172 ? ? ? A .
A 1 173 ILE 173 ? ? ? A .
A 1 174 LYS 174 ? ? ? A .
A 1 175 SER 175 ? ? ? A .
A 1 176 PRO 176 ? ? ? A .
A 1 177 CYS 177 ? ? ? A .
A 1 178 GLN 178 ? ? ? A .
A 1 179 ARG 179 ? ? ? A .
A 1 180 GLU 180 ? ? ? A .
A 1 181 THR 181 ? ? ? A .
A 1 182 PRO 182 ? ? ? A .
A 1 183 GLU 183 ? ? ? A .
A 1 184 GLY 184 ? ? ? A .
A 1 185 THR 185 ? ? ? A .
A 1 186 GLU 186 ? ? ? A .
A 1 187 ALA 187 ? ? ? A .
A 1 188 LYS 188 ? ? ? A .
A 1 189 PRO 189 ? ? ? A .
A 1 190 TRP 190 ? ? ? A .
A 1 191 TYR 191 ? ? ? A .
A 1 192 GLU 192 ? ? ? A .
A 1 193 PRO 193 ? ? ? A .
A 1 194 ILE 194 ? ? ? A .
A 1 195 TYR 195 ? ? ? A .
A 1 196 LEU 196 ? ? ? A .
A 1 197 GLY 197 ? ? ? A .
A 1 198 GLY 198 ? ? ? A .
A 1 199 VAL 199 ? ? ? A .
A 1 200 PHE 200 ? ? ? A .
A 1 201 GLN 201 ? ? ? A .
A 1 202 LEU 202 ? ? ? A .
A 1 203 GLU 203 ? ? ? A .
A 1 204 LYS 204 ? ? ? A .
A 1 205 GLY 205 ? ? ? A .
A 1 206 ASP 206 ? ? ? A .
A 1 207 ARG 207 ? ? ? A .
A 1 208 LEU 208 ? ? ? A .
A 1 209 SER 209 ? ? ? A .
A 1 210 ALA 210 ? ? ? A .
A 1 211 GLU 211 ? ? ? A .
A 1 212 ILE 212 ? ? ? A .
A 1 213 ASN 213 ? ? ? A .
A 1 214 LEU 214 ? ? ? A .
A 1 215 PRO 215 ? ? ? A .
A 1 216 ASN 216 ? ? ? A .
A 1 217 TYR 217 ? ? ? A .
A 1 218 LEU 218 ? ? ? A .
A 1 219 ASP 219 ? ? ? A .
A 1 220 PHE 220 ? ? ? A .
A 1 221 ALA 221 ? ? ? A .
A 1 222 GLU 222 ? ? ? A .
A 1 223 SER 223 ? ? ? A .
A 1 224 GLY 224 ? ? ? A .
A 1 225 GLN 225 ? ? ? A .
A 1 226 VAL 226 ? ? ? A .
A 1 227 TYR 227 ? ? ? A .
A 1 228 PHE 228 ? ? ? A .
A 1 229 GLY 229 ? ? ? A .
A 1 230 ILE 230 ? ? ? A .
A 1 231 ILE 231 ? ? ? A .
A 1 232 ALA 232 ? ? ? A .
A 1 233 LEU 233 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Tumor necrosis factor {PDB ID=7atb, label_asym_id=A, auth_asym_id=A, SMTL ID=7atb.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 7atb, label_asym_id=A'
'target-template alignment' .
4 'model 2' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-12-11
6 PDB https://www.wwpdb.org . 2024-12-06
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 RRCLFLSLFSFLIVLLLTTLFCLLHFGVIGPQR RRCLFLSLFSFLIVLLLTTLFCLLHFGVIGPQR
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 1 32
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 7atb 2024-05-15
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 233
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 233 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 5.3e-10 81.250
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MSTESMIRDVELAEEPLPKKAGGPPGSRRCFCLSLFSFLLVAGATTLFCLLHFGVIGPQREELPNGLQLISPLAQTVKSSSRTPSDKPVAHVVANPEAEGQLQWLSRRANALLANGVELTDNQLIVPSDGLYLIYSQVLFKGQGCPSTHVLLTHTISRFAVSYQTKVNLLSAIKSPCQRETPEGTEAKPWYEPIYLGGVFQLEKGDRLSAEINLPNYLDFAESGQVYFGIIAL
2 1 2
---------------------------RRCLFLSLFSFLIVLLLTTLFCLLHFGVIGPQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 7atb.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 2' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ARG 28 28 ? A 23.342 7.478 1.362 1 1 A ARG 0.370 1
ATOM 2 C CA . ARG 28 28 ? A 22.260 7.772 2.377 1 1 A ARG 0.370 1
ATOM 3 C C . ARG 28 28 ? A 21.035 6.903 2.239 1 1 A ARG 0.370 1
ATOM 4 O O . ARG 28 28 ? A 20.695 6.192 3.163 1 1 A ARG 0.370 1
ATOM 5 C CB . ARG 28 28 ? A 21.784 9.260 2.342 1 1 A ARG 0.370 1
ATOM 6 C CG . ARG 28 28 ? A 20.776 9.651 3.470 1 1 A ARG 0.370 1
ATOM 7 C CD . ARG 28 28 ? A 21.289 9.555 4.918 1 1 A ARG 0.370 1
ATOM 8 N NE . ARG 28 28 ? A 22.460 10.492 5.012 1 1 A ARG 0.370 1
ATOM 9 C CZ . ARG 28 28 ? A 23.189 10.672 6.124 1 1 A ARG 0.370 1
ATOM 10 N NH1 . ARG 28 28 ? A 22.939 9.977 7.225 1 1 A ARG 0.370 1
ATOM 11 N NH2 . ARG 28 28 ? A 24.166 11.579 6.145 1 1 A ARG 0.370 1
ATOM 12 N N . ARG 29 29 ? A 20.338 6.963 1.078 1 1 A ARG 0.660 1
ATOM 13 C CA . ARG 29 29 ? A 19.212 6.105 0.787 1 1 A ARG 0.660 1
ATOM 14 C C . ARG 29 29 ? A 19.604 4.643 0.765 1 1 A ARG 0.660 1
ATOM 15 O O . ARG 29 29 ? A 20.545 4.251 0.075 1 1 A ARG 0.660 1
ATOM 16 C CB . ARG 29 29 ? A 18.640 6.471 -0.600 1 1 A ARG 0.660 1
ATOM 17 C CG . ARG 29 29 ? A 18.114 7.915 -0.701 1 1 A ARG 0.660 1
ATOM 18 C CD . ARG 29 29 ? A 17.570 8.191 -2.102 1 1 A ARG 0.660 1
ATOM 19 N NE . ARG 29 29 ? A 17.047 9.596 -2.133 1 1 A ARG 0.660 1
ATOM 20 C CZ . ARG 29 29 ? A 16.495 10.140 -3.227 1 1 A ARG 0.660 1
ATOM 21 N NH1 . ARG 29 29 ? A 16.407 9.452 -4.361 1 1 A ARG 0.660 1
ATOM 22 N NH2 . ARG 29 29 ? A 16.019 11.381 -3.196 1 1 A ARG 0.660 1
ATOM 23 N N . CYS 30 30 ? A 18.887 3.810 1.524 1 1 A CYS 0.400 1
ATOM 24 C CA . CYS 30 30 ? A 19.217 2.416 1.662 1 1 A CYS 0.400 1
ATOM 25 C C . CYS 30 30 ? A 18.321 1.618 0.751 1 1 A CYS 0.400 1
ATOM 26 O O . CYS 30 30 ? A 17.125 1.494 1.006 1 1 A CYS 0.400 1
ATOM 27 C CB . CYS 30 30 ? A 18.982 1.952 3.120 1 1 A CYS 0.400 1
ATOM 28 S SG . CYS 30 30 ? A 20.094 2.768 4.305 1 1 A CYS 0.400 1
ATOM 29 N N . PHE 31 31 ? A 18.881 1.016 -0.323 1 1 A PHE 0.360 1
ATOM 30 C CA . PHE 31 31 ? A 18.163 0.245 -1.328 1 1 A PHE 0.360 1
ATOM 31 C C . PHE 31 31 ? A 17.346 -0.900 -0.706 1 1 A PHE 0.360 1
ATOM 32 O O . PHE 31 31 ? A 16.213 -1.162 -1.077 1 1 A PHE 0.360 1
ATOM 33 C CB . PHE 31 31 ? A 19.190 -0.260 -2.389 1 1 A PHE 0.360 1
ATOM 34 C CG . PHE 31 31 ? A 18.514 -0.925 -3.562 1 1 A PHE 0.360 1
ATOM 35 C CD1 . PHE 31 31 ? A 18.515 -2.324 -3.686 1 1 A PHE 0.360 1
ATOM 36 C CD2 . PHE 31 31 ? A 17.847 -0.160 -4.533 1 1 A PHE 0.360 1
ATOM 37 C CE1 . PHE 31 31 ? A 17.868 -2.947 -4.761 1 1 A PHE 0.360 1
ATOM 38 C CE2 . PHE 31 31 ? A 17.198 -0.779 -5.610 1 1 A PHE 0.360 1
ATOM 39 C CZ . PHE 31 31 ? A 17.212 -2.174 -5.726 1 1 A PHE 0.360 1
ATOM 40 N N . CYS 32 32 ? A 17.911 -1.544 0.339 1 1 A CYS 0.450 1
ATOM 41 C CA . CYS 32 32 ? A 17.271 -2.601 1.100 1 1 A CYS 0.450 1
ATOM 42 C C . CYS 32 32 ? A 16.039 -2.151 1.883 1 1 A CYS 0.450 1
ATOM 43 O O . CYS 32 32 ? A 14.990 -2.780 1.827 1 1 A CYS 0.450 1
ATOM 44 C CB . CYS 32 32 ? A 18.304 -3.220 2.079 1 1 A CYS 0.450 1
ATOM 45 S SG . CYS 32 32 ? A 19.714 -3.960 1.194 1 1 A CYS 0.450 1
ATOM 46 N N . LEU 33 33 ? A 16.124 -1.008 2.607 1 1 A LEU 0.440 1
ATOM 47 C CA . LEU 33 33 ? A 15.002 -0.427 3.329 1 1 A LEU 0.440 1
ATOM 48 C C . LEU 33 33 ? A 13.930 0.093 2.395 1 1 A LEU 0.440 1
ATOM 49 O O . LEU 33 33 ? A 12.746 -0.104 2.624 1 1 A LEU 0.440 1
ATOM 50 C CB . LEU 33 33 ? A 15.446 0.707 4.285 1 1 A LEU 0.440 1
ATOM 51 C CG . LEU 33 33 ? A 16.454 0.270 5.374 1 1 A LEU 0.440 1
ATOM 52 C CD1 . LEU 33 33 ? A 16.774 1.457 6.300 1 1 A LEU 0.440 1
ATOM 53 C CD2 . LEU 33 33 ? A 15.939 -0.923 6.204 1 1 A LEU 0.440 1
ATOM 54 N N . SER 34 34 ? A 14.341 0.716 1.267 1 1 A SER 0.490 1
ATOM 55 C CA . SER 34 34 ? A 13.445 1.173 0.215 1 1 A SER 0.490 1
ATOM 56 C C . SER 34 34 ? A 12.637 0.054 -0.383 1 1 A SER 0.490 1
ATOM 57 O O . SER 34 34 ? A 11.462 0.233 -0.677 1 1 A SER 0.490 1
ATOM 58 C CB . SER 34 34 ? A 14.173 1.845 -0.970 1 1 A SER 0.490 1
ATOM 59 O OG . SER 34 34 ? A 14.849 3.023 -0.534 1 1 A SER 0.490 1
ATOM 60 N N . LEU 35 35 ? A 13.234 -1.150 -0.552 1 1 A LEU 0.470 1
ATOM 61 C CA . LEU 35 35 ? A 12.511 -2.314 -1.025 1 1 A LEU 0.470 1
ATOM 62 C C . LEU 35 35 ? A 11.345 -2.700 -0.111 1 1 A LEU 0.470 1
ATOM 63 O O . LEU 35 35 ? A 10.218 -2.900 -0.552 1 1 A LEU 0.470 1
ATOM 64 C CB . LEU 35 35 ? A 13.471 -3.506 -1.282 1 1 A LEU 0.470 1
ATOM 65 C CG . LEU 35 35 ? A 12.889 -4.697 -2.102 1 1 A LEU 0.470 1
ATOM 66 C CD1 . LEU 35 35 ? A 12.064 -5.706 -1.273 1 1 A LEU 0.470 1
ATOM 67 C CD2 . LEU 35 35 ? A 12.123 -4.255 -3.369 1 1 A LEU 0.470 1
ATOM 68 N N . PHE 36 36 ? A 11.586 -2.706 1.217 1 1 A PHE 0.470 1
ATOM 69 C CA . PHE 36 36 ? A 10.611 -2.984 2.250 1 1 A PHE 0.470 1
ATOM 70 C C . PHE 36 36 ? A 9.476 -1.944 2.269 1 1 A PHE 0.470 1
ATOM 71 O O . PHE 36 36 ? A 8.318 -2.247 2.545 1 1 A PHE 0.470 1
ATOM 72 C CB . PHE 36 36 ? A 11.380 -3.090 3.597 1 1 A PHE 0.470 1
ATOM 73 C CG . PHE 36 36 ? A 10.513 -3.670 4.676 1 1 A PHE 0.470 1
ATOM 74 C CD1 . PHE 36 36 ? A 10.305 -5.056 4.755 1 1 A PHE 0.470 1
ATOM 75 C CD2 . PHE 36 36 ? A 9.859 -2.830 5.589 1 1 A PHE 0.470 1
ATOM 76 C CE1 . PHE 36 36 ? A 9.468 -5.596 5.740 1 1 A PHE 0.470 1
ATOM 77 C CE2 . PHE 36 36 ? A 9.019 -3.365 6.573 1 1 A PHE 0.470 1
ATOM 78 C CZ . PHE 36 36 ? A 8.828 -4.749 6.653 1 1 A PHE 0.470 1
ATOM 79 N N . SER 37 37 ? A 9.787 -0.677 1.913 1 1 A SER 0.530 1
ATOM 80 C CA . SER 37 37 ? A 8.828 0.421 1.813 1 1 A SER 0.530 1
ATOM 81 C C . SER 37 37 ? A 7.770 0.190 0.748 1 1 A SER 0.530 1
ATOM 82 O O . SER 37 37 ? A 6.597 0.505 0.946 1 1 A SER 0.530 1
ATOM 83 C CB . SER 37 37 ? A 9.477 1.802 1.539 1 1 A SER 0.530 1
ATOM 84 O OG . SER 37 37 ? A 10.400 2.119 2.580 1 1 A SER 0.530 1
ATOM 85 N N . PHE 38 38 ? A 8.151 -0.404 -0.411 1 1 A PHE 0.470 1
ATOM 86 C CA . PHE 38 38 ? A 7.234 -0.767 -1.487 1 1 A PHE 0.470 1
ATOM 87 C C . PHE 38 38 ? A 6.228 -1.835 -1.094 1 1 A PHE 0.470 1
ATOM 88 O O . PHE 38 38 ? A 5.117 -1.897 -1.608 1 1 A PHE 0.470 1
ATOM 89 C CB . PHE 38 38 ? A 7.922 -1.285 -2.769 1 1 A PHE 0.470 1
ATOM 90 C CG . PHE 38 38 ? A 8.821 -0.243 -3.358 1 1 A PHE 0.470 1
ATOM 91 C CD1 . PHE 38 38 ? A 8.350 0.966 -3.899 1 1 A PHE 0.470 1
ATOM 92 C CD2 . PHE 38 38 ? A 10.187 -0.513 -3.398 1 1 A PHE 0.470 1
ATOM 93 C CE1 . PHE 38 38 ? A 9.250 1.890 -4.455 1 1 A PHE 0.470 1
ATOM 94 C CE2 . PHE 38 38 ? A 11.095 0.413 -3.913 1 1 A PHE 0.470 1
ATOM 95 C CZ . PHE 38 38 ? A 10.625 1.617 -4.449 1 1 A PHE 0.470 1
ATOM 96 N N . LEU 39 39 ? A 6.595 -2.722 -0.153 1 1 A LEU 0.490 1
ATOM 97 C CA . LEU 39 39 ? A 5.659 -3.662 0.415 1 1 A LEU 0.490 1
ATOM 98 C C . LEU 39 39 ? A 4.594 -2.971 1.267 1 1 A LEU 0.490 1
ATOM 99 O O . LEU 39 39 ? A 3.404 -3.222 1.126 1 1 A LEU 0.490 1
ATOM 100 C CB . LEU 39 39 ? A 6.467 -4.729 1.184 1 1 A LEU 0.490 1
ATOM 101 C CG . LEU 39 39 ? A 5.696 -6.032 1.473 1 1 A LEU 0.490 1
ATOM 102 C CD1 . LEU 39 39 ? A 6.665 -7.225 1.470 1 1 A LEU 0.490 1
ATOM 103 C CD2 . LEU 39 39 ? A 4.908 -5.994 2.794 1 1 A LEU 0.490 1
ATOM 104 N N . LEU 40 40 ? A 5.001 -2.011 2.130 1 1 A LEU 0.490 1
ATOM 105 C CA . LEU 40 40 ? A 4.109 -1.251 2.992 1 1 A LEU 0.490 1
ATOM 106 C C . LEU 40 40 ? A 3.159 -0.353 2.233 1 1 A LEU 0.490 1
ATOM 107 O O . LEU 40 40 ? A 1.969 -0.305 2.536 1 1 A LEU 0.490 1
ATOM 108 C CB . LEU 40 40 ? A 4.909 -0.385 3.992 1 1 A LEU 0.490 1
ATOM 109 C CG . LEU 40 40 ? A 5.752 -1.199 4.994 1 1 A LEU 0.490 1
ATOM 110 C CD1 . LEU 40 40 ? A 6.594 -0.236 5.845 1 1 A LEU 0.490 1
ATOM 111 C CD2 . LEU 40 40 ? A 4.879 -2.095 5.895 1 1 A LEU 0.490 1
ATOM 112 N N . VAL 41 41 ? A 3.658 0.348 1.188 1 1 A VAL 0.560 1
ATOM 113 C CA . VAL 41 41 ? A 2.837 1.198 0.333 1 1 A VAL 0.560 1
ATOM 114 C C . VAL 41 41 ? A 1.739 0.396 -0.366 1 1 A VAL 0.560 1
ATOM 115 O O . VAL 41 41 ? A 0.595 0.821 -0.417 1 1 A VAL 0.560 1
ATOM 116 C CB . VAL 41 41 ? A 3.672 2.047 -0.649 1 1 A VAL 0.560 1
ATOM 117 C CG1 . VAL 41 41 ? A 4.182 1.248 -1.863 1 1 A VAL 0.560 1
ATOM 118 C CG2 . VAL 41 41 ? A 2.876 3.274 -1.135 1 1 A VAL 0.560 1
ATOM 119 N N . ALA 42 42 ? A 2.071 -0.830 -0.853 1 1 A ALA 0.570 1
ATOM 120 C CA . ALA 42 42 ? A 1.158 -1.738 -1.508 1 1 A ALA 0.570 1
ATOM 121 C C . ALA 42 42 ? A 0.167 -2.390 -0.552 1 1 A ALA 0.570 1
ATOM 122 O O . ALA 42 42 ? A -1.020 -2.485 -0.818 1 1 A ALA 0.570 1
ATOM 123 C CB . ALA 42 42 ? A 1.954 -2.822 -2.264 1 1 A ALA 0.570 1
ATOM 124 N N . GLY 43 43 ? A 0.628 -2.852 0.634 1 1 A GLY 0.570 1
ATOM 125 C CA . GLY 43 43 ? A -0.270 -3.432 1.628 1 1 A GLY 0.570 1
ATOM 126 C C . GLY 43 43 ? A -1.290 -2.469 2.190 1 1 A GLY 0.570 1
ATOM 127 O O . GLY 43 43 ? A -2.412 -2.852 2.514 1 1 A GLY 0.570 1
ATOM 128 N N . ALA 44 44 ? A -0.919 -1.175 2.288 1 1 A ALA 0.580 1
ATOM 129 C CA . ALA 44 44 ? A -1.809 -0.100 2.662 1 1 A ALA 0.580 1
ATOM 130 C C . ALA 44 44 ? A -2.830 0.257 1.587 1 1 A ALA 0.580 1
ATOM 131 O O . ALA 44 44 ? A -4.017 0.366 1.891 1 1 A ALA 0.580 1
ATOM 132 C CB . ALA 44 44 ? A -0.988 1.159 3.001 1 1 A ALA 0.580 1
ATOM 133 N N . THR 45 45 ? A -2.418 0.400 0.297 1 1 A THR 0.560 1
ATOM 134 C CA . THR 45 45 ? A -3.294 0.708 -0.842 1 1 A THR 0.560 1
ATOM 135 C C . THR 45 45 ? A -4.316 -0.367 -1.057 1 1 A THR 0.560 1
ATOM 136 O O . THR 45 45 ? A -5.431 -0.065 -1.470 1 1 A THR 0.560 1
ATOM 137 C CB . THR 45 45 ? A -2.608 0.948 -2.189 1 1 A THR 0.560 1
ATOM 138 O OG1 . THR 45 45 ? A -1.626 -0.032 -2.451 1 1 A THR 0.560 1
ATOM 139 C CG2 . THR 45 45 ? A -1.894 2.304 -2.178 1 1 A THR 0.560 1
ATOM 140 N N . THR 46 46 ? A -3.987 -1.640 -0.745 1 1 A THR 0.560 1
ATOM 141 C CA . THR 46 46 ? A -4.954 -2.733 -0.773 1 1 A THR 0.560 1
ATOM 142 C C . THR 46 46 ? A -6.140 -2.495 0.140 1 1 A THR 0.560 1
ATOM 143 O O . THR 46 46 ? A -7.275 -2.500 -0.305 1 1 A THR 0.560 1
ATOM 144 C CB . THR 46 46 ? A -4.348 -4.073 -0.375 1 1 A THR 0.560 1
ATOM 145 O OG1 . THR 46 46 ? A -3.279 -4.386 -1.245 1 1 A THR 0.560 1
ATOM 146 C CG2 . THR 46 46 ? A -5.324 -5.244 -0.556 1 1 A THR 0.560 1
ATOM 147 N N . LEU 47 47 ? A -5.918 -2.217 1.447 1 1 A LEU 0.530 1
ATOM 148 C CA . LEU 47 47 ? A -7.013 -2.031 2.387 1 1 A LEU 0.530 1
ATOM 149 C C . LEU 47 47 ? A -7.651 -0.668 2.310 1 1 A LEU 0.530 1
ATOM 150 O O . LEU 47 47 ? A -8.870 -0.549 2.288 1 1 A LEU 0.530 1
ATOM 151 C CB . LEU 47 47 ? A -6.576 -2.293 3.841 1 1 A LEU 0.530 1
ATOM 152 C CG . LEU 47 47 ? A -6.023 -3.713 4.067 1 1 A LEU 0.530 1
ATOM 153 C CD1 . LEU 47 47 ? A -5.458 -3.805 5.491 1 1 A LEU 0.530 1
ATOM 154 C CD2 . LEU 47 47 ? A -7.077 -4.812 3.818 1 1 A LEU 0.530 1
ATOM 155 N N . PHE 48 48 ? A -6.838 0.403 2.209 1 1 A PHE 0.510 1
ATOM 156 C CA . PHE 48 48 ? A -7.269 1.785 2.144 1 1 A PHE 0.510 1
ATOM 157 C C . PHE 48 48 ? A -8.207 2.024 0.960 1 1 A PHE 0.510 1
ATOM 158 O O . PHE 48 48 ? A -9.216 2.709 1.078 1 1 A PHE 0.510 1
ATOM 159 C CB . PHE 48 48 ? A -5.997 2.676 2.073 1 1 A PHE 0.510 1
ATOM 160 C CG . PHE 48 48 ? A -6.313 4.143 2.021 1 1 A PHE 0.510 1
ATOM 161 C CD1 . PHE 48 48 ? A -6.257 4.831 0.799 1 1 A PHE 0.510 1
ATOM 162 C CD2 . PHE 48 48 ? A -6.723 4.830 3.173 1 1 A PHE 0.510 1
ATOM 163 C CE1 . PHE 48 48 ? A -6.602 6.186 0.728 1 1 A PHE 0.510 1
ATOM 164 C CE2 . PHE 48 48 ? A -7.064 6.187 3.107 1 1 A PHE 0.510 1
ATOM 165 C CZ . PHE 48 48 ? A -7.000 6.866 1.885 1 1 A PHE 0.510 1
ATOM 166 N N . CYS 49 49 ? A -7.930 1.387 -0.205 1 1 A CYS 0.570 1
ATOM 167 C CA . CYS 49 49 ? A -8.829 1.437 -1.349 1 1 A CYS 0.570 1
ATOM 168 C C . CYS 49 49 ? A -10.195 0.830 -1.030 1 1 A CYS 0.570 1
ATOM 169 O O . CYS 49 49 ? A -11.219 1.428 -1.327 1 1 A CYS 0.570 1
ATOM 170 C CB . CYS 49 49 ? A -8.197 0.749 -2.598 1 1 A CYS 0.570 1
ATOM 171 S SG . CYS 49 49 ? A -9.109 0.968 -4.166 1 1 A CYS 0.570 1
ATOM 172 N N . LEU 50 50 ? A -10.247 -0.336 -0.342 1 1 A LEU 0.530 1
ATOM 173 C CA . LEU 50 50 ? A -11.479 -1.025 0.011 1 1 A LEU 0.530 1
ATOM 174 C C . LEU 50 50 ? A -12.348 -0.221 0.966 1 1 A LEU 0.530 1
ATOM 175 O O . LEU 50 50 ? A -13.573 -0.205 0.845 1 1 A LEU 0.530 1
ATOM 176 C CB . LEU 50 50 ? A -11.198 -2.424 0.621 1 1 A LEU 0.530 1
ATOM 177 C CG . LEU 50 50 ? A -10.376 -3.358 -0.296 1 1 A LEU 0.530 1
ATOM 178 C CD1 . LEU 50 50 ? A -9.755 -4.516 0.502 1 1 A LEU 0.530 1
ATOM 179 C CD2 . LEU 50 50 ? A -11.158 -3.888 -1.507 1 1 A LEU 0.530 1
ATOM 180 N N . LEU 51 51 ? A -11.696 0.483 1.916 1 1 A LEU 0.530 1
ATOM 181 C CA . LEU 51 51 ? A -12.313 1.398 2.856 1 1 A LEU 0.530 1
ATOM 182 C C . LEU 51 51 ? A -12.865 2.653 2.185 1 1 A LEU 0.530 1
ATOM 183 O O . LEU 51 51 ? A -14.012 3.020 2.391 1 1 A LEU 0.530 1
ATOM 184 C CB . LEU 51 51 ? A -11.298 1.788 3.969 1 1 A LEU 0.530 1
ATOM 185 C CG . LEU 51 51 ? A -10.729 0.584 4.760 1 1 A LEU 0.530 1
ATOM 186 C CD1 . LEU 51 51 ? A -9.633 1.041 5.740 1 1 A LEU 0.530 1
ATOM 187 C CD2 . LEU 51 51 ? A -11.830 -0.191 5.500 1 1 A LEU 0.530 1
ATOM 188 N N . HIS 52 52 ? A -12.072 3.307 1.302 1 1 A HIS 0.500 1
ATOM 189 C CA . HIS 52 52 ? A -12.477 4.520 0.605 1 1 A HIS 0.500 1
ATOM 190 C C . HIS 52 52 ? A -13.518 4.303 -0.484 1 1 A HIS 0.500 1
ATOM 191 O O . HIS 52 52 ? A -14.491 5.037 -0.591 1 1 A HIS 0.500 1
ATOM 192 C CB . HIS 52 52 ? A -11.247 5.183 -0.058 1 1 A HIS 0.500 1
ATOM 193 C CG . HIS 52 52 ? A -11.571 6.409 -0.854 1 1 A HIS 0.500 1
ATOM 194 N ND1 . HIS 52 52 ? A -11.633 7.629 -0.207 1 1 A HIS 0.500 1
ATOM 195 C CD2 . HIS 52 52 ? A -11.907 6.551 -2.156 1 1 A HIS 0.500 1
ATOM 196 C CE1 . HIS 52 52 ? A -12.005 8.481 -1.128 1 1 A HIS 0.500 1
ATOM 197 N NE2 . HIS 52 52 ? A -12.185 7.891 -2.343 1 1 A HIS 0.500 1
ATOM 198 N N . PHE 53 53 ? A -13.331 3.267 -1.339 1 1 A PHE 0.500 1
ATOM 199 C CA . PHE 53 53 ? A -14.246 2.912 -2.409 1 1 A PHE 0.500 1
ATOM 200 C C . PHE 53 53 ? A -15.579 2.444 -1.837 1 1 A PHE 0.500 1
ATOM 201 O O . PHE 53 53 ? A -16.633 2.610 -2.432 1 1 A PHE 0.500 1
ATOM 202 C CB . PHE 53 53 ? A -13.601 1.816 -3.315 1 1 A PHE 0.500 1
ATOM 203 C CG . PHE 53 53 ? A -14.350 1.615 -4.615 1 1 A PHE 0.500 1
ATOM 204 C CD1 . PHE 53 53 ? A -15.437 0.728 -4.704 1 1 A PHE 0.500 1
ATOM 205 C CD2 . PHE 53 53 ? A -13.986 2.340 -5.761 1 1 A PHE 0.500 1
ATOM 206 C CE1 . PHE 53 53 ? A -16.127 0.548 -5.908 1 1 A PHE 0.500 1
ATOM 207 C CE2 . PHE 53 53 ? A -14.680 2.175 -6.968 1 1 A PHE 0.500 1
ATOM 208 C CZ . PHE 53 53 ? A -15.747 1.272 -7.043 1 1 A PHE 0.500 1
ATOM 209 N N . GLY 54 54 ? A -15.536 1.836 -0.627 1 1 A GLY 0.560 1
ATOM 210 C CA . GLY 54 54 ? A -16.731 1.390 0.066 1 1 A GLY 0.560 1
ATOM 211 C C . GLY 54 54 ? A -17.338 0.153 -0.529 1 1 A GLY 0.560 1
ATOM 212 O O . GLY 54 54 ? A -18.540 -0.051 -0.431 1 1 A GLY 0.560 1
ATOM 213 N N . VAL 55 55 ? A -16.480 -0.698 -1.152 1 1 A VAL 0.560 1
ATOM 214 C CA . VAL 55 55 ? A -16.796 -1.883 -1.952 1 1 A VAL 0.560 1
ATOM 215 C C . VAL 55 55 ? A -17.872 -2.758 -1.328 1 1 A VAL 0.560 1
ATOM 216 O O . VAL 55 55 ? A -18.934 -2.961 -1.887 1 1 A VAL 0.560 1
ATOM 217 C CB . VAL 55 55 ? A -15.553 -2.764 -2.210 1 1 A VAL 0.560 1
ATOM 218 C CG1 . VAL 55 55 ? A -15.793 -3.650 -3.452 1 1 A VAL 0.560 1
ATOM 219 C CG2 . VAL 55 55 ? A -14.262 -1.942 -2.390 1 1 A VAL 0.560 1
ATOM 220 N N . ILE 56 56 ? A -17.560 -3.238 -0.105 1 1 A ILE 0.510 1
ATOM 221 C CA . ILE 56 56 ? A -18.390 -4.080 0.729 1 1 A ILE 0.510 1
ATOM 222 C C . ILE 56 56 ? A -17.941 -3.975 2.187 1 1 A ILE 0.510 1
ATOM 223 O O . ILE 56 56 ? A -18.495 -4.615 3.072 1 1 A ILE 0.510 1
ATOM 224 C CB . ILE 56 56 ? A -18.335 -5.552 0.284 1 1 A ILE 0.510 1
ATOM 225 C CG1 . ILE 56 56 ? A -16.972 -6.003 -0.332 1 1 A ILE 0.510 1
ATOM 226 C CG2 . ILE 56 56 ? A -19.517 -5.797 -0.690 1 1 A ILE 0.510 1
ATOM 227 C CD1 . ILE 56 56 ? A -15.760 -5.998 0.620 1 1 A ILE 0.510 1
ATOM 228 N N . GLY 57 57 ? A -16.940 -3.118 2.503 1 1 A GLY 0.550 1
ATOM 229 C CA . GLY 57 57 ? A -16.474 -2.942 3.875 1 1 A GLY 0.550 1
ATOM 230 C C . GLY 57 57 ? A -16.127 -1.506 4.157 1 1 A GLY 0.550 1
ATOM 231 O O . GLY 57 57 ? A -14.951 -1.248 4.397 1 1 A GLY 0.550 1
ATOM 232 N N . PRO 58 58 ? A -17.052 -0.547 4.128 1 1 A PRO 0.740 1
ATOM 233 C CA . PRO 58 58 ? A -16.773 0.847 4.455 1 1 A PRO 0.740 1
ATOM 234 C C . PRO 58 58 ? A -16.634 1.032 5.966 1 1 A PRO 0.740 1
ATOM 235 O O . PRO 58 58 ? A -17.586 1.471 6.612 1 1 A PRO 0.740 1
ATOM 236 C CB . PRO 58 58 ? A -18.016 1.574 3.894 1 1 A PRO 0.740 1
ATOM 237 C CG . PRO 58 58 ? A -19.166 0.572 4.071 1 1 A PRO 0.740 1
ATOM 238 C CD . PRO 58 58 ? A -18.478 -0.778 3.871 1 1 A PRO 0.740 1
ATOM 239 N N . GLN 59 59 ? A -15.474 0.671 6.540 1 1 A GLN 0.660 1
ATOM 240 C CA . GLN 59 59 ? A -15.136 0.893 7.932 1 1 A GLN 0.660 1
ATOM 241 C C . GLN 59 59 ? A -14.355 2.216 8.133 1 1 A GLN 0.660 1
ATOM 242 O O . GLN 59 59 ? A -14.003 2.886 7.124 1 1 A GLN 0.660 1
ATOM 243 C CB . GLN 59 59 ? A -14.271 -0.275 8.479 1 1 A GLN 0.660 1
ATOM 244 C CG . GLN 59 59 ? A -14.958 -1.654 8.345 1 1 A GLN 0.660 1
ATOM 245 C CD . GLN 59 59 ? A -14.122 -2.765 8.985 1 1 A GLN 0.660 1
ATOM 246 O OE1 . GLN 59 59 ? A -13.408 -2.603 9.957 1 1 A GLN 0.660 1
ATOM 247 N NE2 . GLN 59 59 ? A -14.237 -3.997 8.415 1 1 A GLN 0.660 1
ATOM 248 O OXT . GLN 59 59 ? A -14.093 2.556 9.319 1 1 A GLN 0.660 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.523
2 1 3 0.010
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 28 ARG 1 0.370
2 1 A 29 ARG 1 0.660
3 1 A 30 CYS 1 0.400
4 1 A 31 PHE 1 0.360
5 1 A 32 CYS 1 0.450
6 1 A 33 LEU 1 0.440
7 1 A 34 SER 1 0.490
8 1 A 35 LEU 1 0.470
9 1 A 36 PHE 1 0.470
10 1 A 37 SER 1 0.530
11 1 A 38 PHE 1 0.470
12 1 A 39 LEU 1 0.490
13 1 A 40 LEU 1 0.490
14 1 A 41 VAL 1 0.560
15 1 A 42 ALA 1 0.570
16 1 A 43 GLY 1 0.570
17 1 A 44 ALA 1 0.580
18 1 A 45 THR 1 0.560
19 1 A 46 THR 1 0.560
20 1 A 47 LEU 1 0.530
21 1 A 48 PHE 1 0.510
22 1 A 49 CYS 1 0.570
23 1 A 50 LEU 1 0.530
24 1 A 51 LEU 1 0.530
25 1 A 52 HIS 1 0.500
26 1 A 53 PHE 1 0.500
27 1 A 54 GLY 1 0.560
28 1 A 55 VAL 1 0.560
29 1 A 56 ILE 1 0.510
30 1 A 57 GLY 1 0.550
31 1 A 58 PRO 1 0.740
32 1 A 59 GLN 1 0.660
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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