data_SMR-fdf07c2a594c05ee951df4fe069638bf_2
_entry.id SMR-fdf07c2a594c05ee951df4fe069638bf_2
_struct.entry_id SMR-fdf07c2a594c05ee951df4fe069638bf_2
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - B3GDZ6/ B3GDZ6_PIG, Tumor necrosis factor
  - P23563/ TNFA_PIG, Tumor necrosis factor

Estimated model accuracy of this model is 0.005, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries B3GDZ6, P23563'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 29437.637 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP TNFA_PIG P23563 1
;MSTESMIRDVELAEEALAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFEVIGPQKEEFPAGPLSI
NPLAQGLRSSSQTSDKPVAHVVANVKAEGQLQWQSGYANALLANGVKLKDNQLVVPTDGLYLIYSQVLFR
GQGCPSTNVFLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKDDRLSAE
INLPDYLDFAESGQVYFGIIAL
;
'Tumor necrosis factor'
2 1 UNP B3GDZ6_PIG B3GDZ6 1
;MSTESMIRDVELAEEALAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFEVIGPQKEEFPAGPLSI
NPLAQGLRSSSQTSDKPVAHVVANVKAEGQLQWQSGYANALLANGVKLKDNQLVVPTDGLYLIYSQVLFR
GQGCPSTNVFLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKDDRLSAE
INLPDYLDFAESGQVYFGIIAL
;
'Tumor necrosis factor'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 232 1 232
2 2 1 232 1 232
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . TNFA_PIG P23563 . 1 232 9823 'Sus scrofa (Pig)' 1991-11-01
65B28F702D99C8BE
1 UNP . B3GDZ6_PIG B3GDZ6 . 1 232 9823 'Sus scrofa (Pig)' 2008-07-22
65B28F702D99C8BE
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A
;MSTESMIRDVELAEEALAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFEVIGPQKEEFPAGPLSI
NPLAQGLRSSSQTSDKPVAHVVANVKAEGQLQWQSGYANALLANGVKLKDNQLVVPTDGLYLIYSQVLFR
GQGCPSTNVFLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKDDRLSAE
INLPDYLDFAESGQVYFGIIAL
;

;MSTESMIRDVELAEEALAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFEVIGPQKEEFPAGPLSI
NPLAQGLRSSSQTSDKPVAHVVANVKAEGQLQWQSGYANALLANGVKLKDNQLVVPTDGLYLIYSQVLFR
GQGCPSTNVFLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKDDRLSAE
INLPDYLDFAESGQVYFGIIAL
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 SER .
1 3 THR .
1 4 GLU .
1 5 SER .
1 6 MET .
1 7 ILE .
1 8 ARG .
1 9 ASP .
1 10 VAL .
1 11 GLU .
1 12 LEU .
1 13 ALA .
1 14 GLU .
1 15 GLU .
1 16 ALA .
1 17 LEU .
1 18 ALA .
1 19 LYS .
1 20 LYS .
1 21 ALA .
1 22 GLY .
1 23 GLY .
1 24 PRO .
1 25 GLN .
1 26 GLY .
1 27 SER .
1 28 ARG .
1 29 ARG .
1 30 CYS .
1 31 LEU .
1 32 CYS .
1 33 LEU .
1 34 SER .
1 35 LEU .
1 36 PHE .
1 37 SER .
1 38 PHE .
1 39 LEU .
1 40 LEU .
1 41 VAL .
1 42 ALA .
1 43 GLY .
1 44 ALA .
1 45 THR .
1 46 THR .
1 47 LEU .
1 48 PHE .
1 49 CYS .
1 50 LEU .
1 51 LEU .
1 52 HIS .
1 53 PHE .
1 54 GLU .
1 55 VAL .
1 56 ILE .
1 57 GLY .
1 58 PRO .
1 59 GLN .
1 60 LYS .
1 61 GLU .
1 62 GLU .
1 63 PHE .
1 64 PRO .
1 65 ALA .
1 66 GLY .
1 67 PRO .
1 68 LEU .
1 69 SER .
1 70 ILE .
1 71 ASN .
1 72 PRO .
1 73 LEU .
1 74 ALA .
1 75 GLN .
1 76 GLY .
1 77 LEU .
1 78 ARG .
1 79 SER .
1 80 SER .
1 81 SER .
1 82 GLN .
1 83 THR .
1 84 SER .
1 85 ASP .
1 86 LYS .
1 87 PRO .
1 88 VAL .
1 89 ALA .
1 90 HIS .
1 91 VAL .
1 92 VAL .
1 93 ALA .
1 94 ASN .
1 95 VAL .
1 96 LYS .
1 97 ALA .
1 98 GLU .
1 99 GLY .
1 100 GLN .
1 101 LEU .
1 102 GLN .
1 103 TRP .
1 104 GLN .
1 105 SER .
1 106 GLY .
1 107 TYR .
1 108 ALA .
1 109 ASN .
1 110 ALA .
1 111 LEU .
1 112 LEU .
1 113 ALA .
1 114 ASN .
1 115 GLY .
1 116 VAL .
1 117 LYS .
1 118 LEU .
1 119 LYS .
1 120 ASP .
1 121 ASN .
1 122 GLN .
1 123 LEU .
1 124 VAL .
1 125 VAL .
1 126 PRO .
1 127 THR .
1 128 ASP .
1 129 GLY .
1 130 LEU .
1 131 TYR .
1 132 LEU .
1 133 ILE .
1 134 TYR .
1 135 SER .
1 136 GLN .
1 137 VAL .
1 138 LEU .
1 139 PHE .
1 140 ARG .
1 141 GLY .
1 142 GLN .
1 143 GLY .
1 144 CYS .
1 145 PRO .
1 146 SER .
1 147 THR .
1 148 ASN .
1 149 VAL .
1 150 PHE .
1 151 LEU .
1 152 THR .
1 153 HIS .
1 154 THR .
1 155 ILE .
1 156 SER .
1 157 ARG .
1 158 ILE .
1 159 ALA .
1 160 VAL .
1 161 SER .
1 162 TYR .
1 163 GLN .
1 164 THR .
1 165 LYS .
1 166 VAL .
1 167 ASN .
1 168 LEU .
1 169 LEU .
1 170 SER .
1 171 ALA .
1 172 ILE .
1 173 LYS .
1 174 SER .
1 175 PRO .
1 176 CYS .
1 177 GLN .
1 178 ARG .
1 179 GLU .
1 180 THR .
1 181 PRO .
1 182 GLU .
1 183 GLY .
1 184 ALA .
1 185 GLU .
1 186 ALA .
1 187 LYS .
1 188 PRO .
1 189 TRP .
1 190 TYR .
1 191 GLU .
1 192 PRO .
1 193 ILE .
1 194 TYR .
1 195 LEU .
1 196 GLY .
1 197 GLY .
1 198 VAL .
1 199 PHE .
1 200 GLN .
1 201 LEU .
1 202 GLU .
1 203 LYS .
1 204 ASP .
1 205 ASP .
1 206 ARG .
1 207 LEU .
1 208 SER .
1 209 ALA .
1 210 GLU .
1 211 ILE .
1 212 ASN .
1 213 LEU .
1 214 PRO .
1 215 ASP .
1 216 TYR .
1 217 LEU .
1 218 ASP .
1 219 PHE .
1 220 ALA .
1 221 GLU .
1 222 SER .
1 223 GLY .
1 224 GLN .
1 225 VAL .
1 226 TYR .
1 227 PHE .
1 228 GLY .
1 229 ILE .
1 230 ILE .
1 231 ALA .
1 232 LEU .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 SER 2 ? ? ? A .
A 1 3 THR 3 ? ? ? A .
A 1 4 GLU 4 ? ? ? A .
A 1 5 SER 5 ? ? ? A .
A 1 6 MET 6 ? ? ? A .
A 1 7 ILE 7 ? ? ? A .
A 1 8 ARG 8 ? ? ? A .
A 1 9 ASP 9 ? ? ? A .
A 1 10 VAL 10 ? ? ? A .
A 1 11 GLU 11 ? ? ? A .
A 1 12 LEU 12 ? ? ? A .
A 1 13 ALA 13 ? ? ? A .
A 1 14 GLU 14 ? ? ? A .
A 1 15 GLU 15 ? ? ? A .
A 1 16 ALA 16 ? ? ? A .
A 1 17 LEU 17 ? ? ? A .
A 1 18 ALA 18 ? ? ? A .
A 1 19 LYS 19 ? ? ? A .
A 1 20 LYS 20 ? ? ? A .
A 1 21 ALA 21 ? ? ? A .
A 1 22 GLY 22 ? ? ? A .
A 1 23 GLY 23 ? ? ? A .
A 1 24 PRO 24 ? ? ? A .
A 1 25 GLN 25 ? ? ? A .
A 1 26 GLY 26 ? ? ? A .
A 1 27 SER 27 ? ? ? A .
A 1 28 ARG 28 28 ARG ARG A .
A 1 29 ARG 29 29 ARG ARG A .
A 1 30 CYS 30 30 CYS CYS A .
A 1 31 LEU 31 31 LEU LEU A .
A 1 32 CYS 32 32 CYS CYS A .
A 1 33 LEU 33 33 LEU LEU A .
A 1 34 SER 34 34 SER SER A .
A 1 35 LEU 35 35 LEU LEU A .
A 1 36 PHE 36 36 PHE PHE A .
A 1 37 SER 37 37 SER SER A .
A 1 38 PHE 38 38 PHE PHE A .
A 1 39 LEU 39 39 LEU LEU A .
A 1 40 LEU 40 40 LEU LEU A .
A 1 41 VAL 41 41 VAL VAL A .
A 1 42 ALA 42 42 ALA ALA A .
A 1 43 GLY 43 43 GLY GLY A .
A 1 44 ALA 44 44 ALA ALA A .
A 1 45 THR 45 45 THR THR A .
A 1 46 THR 46 46 THR THR A .
A 1 47 LEU 47 47 LEU LEU A .
A 1 48 PHE 48 48 PHE PHE A .
A 1 49 CYS 49 49 CYS CYS A .
A 1 50 LEU 50 50 LEU LEU A .
A 1 51 LEU 51 51 LEU LEU A .
A 1 52 HIS 52 52 HIS HIS A .
A 1 53 PHE 53 53 PHE PHE A .
A 1 54 GLU 54 54 GLU GLU A .
A 1 55 VAL 55 55 VAL VAL A .
A 1 56 ILE 56 56 ILE ILE A .
A 1 57 GLY 57 57 GLY GLY A .
A 1 58 PRO 58 58 PRO PRO A .
A 1 59 GLN 59 59 GLN GLN A .
A 1 60 LYS 60 ? ? ? A .
A 1 61 GLU 61 ? ? ? A .
A 1 62 GLU 62 ? ? ? A .
A 1 63 PHE 63 ? ? ? A .
A 1 64 PRO 64 ? ? ? A .
A 1 65 ALA 65 ? ? ? A .
A 1 66 GLY 66 ? ? ? A .
A 1 67 PRO 67 ? ? ? A .
A 1 68 LEU 68 ? ? ? A .
A 1 69 SER 69 ? ? ? A .
A 1 70 ILE 70 ? ? ? A .
A 1 71 ASN 71 ? ? ? A .
A 1 72 PRO 72 ? ? ? A .
A 1 73 LEU 73 ? ? ? A .
A 1 74 ALA 74 ? ? ? A .
A 1 75 GLN 75 ? ? ? A .
A 1 76 GLY 76 ? ? ? A .
A 1 77 LEU 77 ? ? ? A .
A 1 78 ARG 78 ? ? ? A .
A 1 79 SER 79 ? ? ? A .
A 1 80 SER 80 ? ? ? A .
A 1 81 SER 81 ? ? ? A .
A 1 82 GLN 82 ? ? ? A .
A 1 83 THR 83 ? ? ? A .
A 1 84 SER 84 ? ? ? A .
A 1 85 ASP 85 ? ? ? A .
A 1 86 LYS 86 ? ? ? A .
A 1 87 PRO 87 ? ? ? A .
A 1 88 VAL 88 ? ? ? A .
A 1 89 ALA 89 ? ? ? A .
A 1 90 HIS 90 ? ? ? A .
A 1 91 VAL 91 ? ? ? A .
A 1 92 VAL 92 ? ? ? A .
A 1 93 ALA 93 ? ? ? A .
A 1 94 ASN 94 ? ? ? A .
A 1 95 VAL 95 ? ? ? A .
A 1 96 LYS 96 ? ? ? A .
A 1 97 ALA 97 ? ? ? A .
A 1 98 GLU 98 ? ? ? A .
A 1 99 GLY 99 ? ? ? A .
A 1 100 GLN 100 ? ? ? A .
A 1 101 LEU 101 ? ? ? A .
A 1 102 GLN 102 ? ? ? A .
A 1 103 TRP 103 ? ? ? A .
A 1 104 GLN 104 ? ? ? A .
A 1 105 SER 105 ? ? ? A .
A 1 106 GLY 106 ? ? ? A .
A 1 107 TYR 107 ? ? ? A .
A 1 108 ALA 108 ? ? ? A .
A 1 109 ASN 109 ? ? ? A .
A 1 110 ALA 110 ? ? ? A .
A 1 111 LEU 111 ? ? ? A .
A 1 112 LEU 112 ? ? ? A .
A 1 113 ALA 113 ? ? ? A .
A 1 114 ASN 114 ? ? ? A .
A 1 115 GLY 115 ? ? ? A .
A 1 116 VAL 116 ? ? ? A .
A 1 117 LYS 117 ? ? ? A .
A 1 118 LEU 118 ? ? ? A .
A 1 119 LYS 119 ? ? ? A .
A 1 120 ASP 120 ? ? ? A .
A 1 121 ASN 121 ? ? ? A .
A 1 122 GLN 122 ? ? ? A .
A 1 123 LEU 123 ? ? ? A .
A 1 124 VAL 124 ? ? ? A .
A 1 125 VAL 125 ? ? ? A .
A 1 126 PRO 126 ? ? ? A .
A 1 127 THR 127 ? ? ? A .
A 1 128 ASP 128 ? ? ? A .
A 1 129 GLY 129 ? ? ? A .
A 1 130 LEU 130 ? ? ? A .
A 1 131 TYR 131 ? ? ? A .
A 1 132 LEU 132 ? ? ? A .
A 1 133 ILE 133 ? ? ? A .
A 1 134 TYR 134 ? ? ? A .
A 1 135 SER 135 ? ? ? A .
A 1 136 GLN 136 ? ? ? A .
A 1 137 VAL 137 ? ? ? A .
A 1 138 LEU 138 ? ? ? A .
A 1 139 PHE 139 ? ? ? A .
A 1 140 ARG 140 ? ? ? A .
A 1 141 GLY 141 ? ? ? A .
A 1 142 GLN 142 ? ? ? A .
A 1 143 GLY 143 ? ? ? A .
A 1 144 CYS 144 ? ? ? A .
A 1 145 PRO 145 ? ? ? A .
A 1 146 SER 146 ? ? ? A .
A 1 147 THR 147 ? ? ? A .
A 1 148 ASN 148 ? ? ? A .
A 1 149 VAL 149 ? ? ? A .
A 1 150 PHE 150 ? ? ? A .
A 1 151 LEU 151 ? ? ? A .
A 1 152 THR 152 ? ? ? A .
A 1 153 HIS 153 ? ? ? A .
A 1 154 THR 154 ? ? ? A .
A 1 155 ILE 155 ? ? ? A .
A 1 156 SER 156 ? ? ? A .
A 1 157 ARG 157 ? ? ? A .
A 1 158 ILE 158 ? ? ? A .
A 1 159 ALA 159 ? ? ? A .
A 1 160 VAL 160 ? ? ? A .
A 1 161 SER 161 ? ? ? A .
A 1 162 TYR 162 ? ? ? A .
A 1 163 GLN 163 ? ? ? A .
A 1 164 THR 164 ? ? ? A .
A 1 165 LYS 165 ? ? ? A .
A 1 166 VAL 166 ? ? ? A .
A 1 167 ASN 167 ? ? ? A .
A 1 168 LEU 168 ? ? ? A .
A 1 169 LEU 169 ? ? ? A .
A 1 170 SER 170 ? ? ? A .
A 1 171 ALA 171 ? ? ? A .
A 1 172 ILE 172 ? ? ? A .
A 1 173 LYS 173 ? ? ? A .
A 1 174 SER 174 ? ? ? A .
A 1 175 PRO 175 ? ? ? A .
A 1 176 CYS 176 ? ? ? A .
A 1 177 GLN 177 ? ? ? A .
A 1 178 ARG 178 ? ? ? A .
A 1 179 GLU 179 ? ? ? A .
A 1 180 THR 180 ? ? ? A .
A 1 181 PRO 181 ? ? ? A .
A 1 182 GLU 182 ? ? ? A .
A 1 183 GLY 183 ? ? ? A .
A 1 184 ALA 184 ? ? ? A .
A 1 185 GLU 185 ? ? ? A .
A 1 186 ALA 186 ? ? ? A .
A 1 187 LYS 187 ? ? ? A .
A 1 188 PRO 188 ? ? ? A .
A 1 189 TRP 189 ? ? ? A .
A 1 190 TYR 190 ? ? ? A .
A 1 191 GLU 191 ? ? ? A .
A 1 192 PRO 192 ? ? ? A .
A 1 193 ILE 193 ? ? ? A .
A 1 194 TYR 194 ? ? ? A .
A 1 195 LEU 195 ? ? ? A .
A 1 196 GLY 196 ? ? ? A .
A 1 197 GLY 197 ? ? ? A .
A 1 198 VAL 198 ? ? ? A .
A 1 199 PHE 199 ? ? ? A .
A 1 200 GLN 200 ? ? ? A .
A 1 201 LEU 201 ? ? ? A .
A 1 202 GLU 202 ? ? ? A .
A 1 203 LYS 203 ? ? ? A .
A 1 204 ASP 204 ? ? ? A .
A 1 205 ASP 205 ? ? ? A .
A 1 206 ARG 206 ? ? ? A .
A 1 207 LEU 207 ? ? ? A .
A 1 208 SER 208 ? ? ? A .
A 1 209 ALA 209 ? ? ? A .
A 1 210 GLU 210 ? ? ? A .
A 1 211 ILE 211 ? ? ? A .
A 1 212 ASN 212 ? ? ? A .
A 1 213 LEU 213 ? ? ? A .
A 1 214 PRO 214 ? ? ? A .
A 1 215 ASP 215 ? ? ? A .
A 1 216 TYR 216 ? ? ? A .
A 1 217 LEU 217 ? ? ? A .
A 1 218 ASP 218 ? ? ? A .
A 1 219 PHE 219 ? ? ? A .
A 1 220 ALA 220 ? ? ? A .
A 1 221 GLU 221 ? ? ? A .
A 1 222 SER 222 ? ? ? A .
A 1 223 GLY 223 ? ? ? A .
A 1 224 GLN 224 ? ? ? A .
A 1 225 VAL 225 ? ? ? A .
A 1 226 TYR 226 ? ? ? A .
A 1 227 PHE 227 ? ? ? A .
A 1 228 GLY 228 ? ? ? A .
A 1 229 ILE 229 ? ? ? A .
A 1 230 ILE 230 ? ? ? A .
A 1 231 ALA 231 ? ? ? A .
A 1 232 LEU 232 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Tumor necrosis factor {PDB ID=7asy, label_asym_id=A, auth_asym_id=A, SMTL ID=7asy.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 7asy, label_asym_id=A'
'target-template alignment' .
4 'model 2' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-12-11
6 PDB https://www.wwpdb.org . 2024-12-06
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 RRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQR RRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQR
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 1 32
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 7asy 2024-05-15
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 232
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 232 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 1.4e-08 90.625
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MSTESMIRDVELAEEALAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFEVIGPQKEEFPAGPLSINPLAQGLRSSSQTSDKPVAHVVANVKAEGQLQWQSGYANALLANGVKLKDNQLVVPTDGLYLIYSQVLFRGQGCPSTNVFLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKDDRLSAEINLPDYLDFAESGQVYFGIIAL
2 1 2
---------------------------RRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 7asy.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 2' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ARG 28 28 ? A 24.932 -6.505 -0.806 1 1 A ARG 0.690 1
ATOM 2 C CA . ARG 28 28 ? A 24.796 -5.166 -0.122 1 1 A ARG 0.690 1
ATOM 3 C C . ARG 28 28 ? A 23.563 -4.451 -0.624 1 1 A ARG 0.690 1
ATOM 4 O O . ARG 28 28 ? A 23.389 -4.326 -1.828 1 1 A ARG 0.690 1
ATOM 5 C CB . ARG 28 28 ? A 26.077 -4.305 -0.388 1 1 A ARG 0.690 1
ATOM 6 C CG . ARG 28 28 ? A 26.011 -2.813 0.053 1 1 A ARG 0.690 1
ATOM 7 C CD . ARG 28 28 ? A 25.697 -1.783 -1.052 1 1 A ARG 0.690 1
ATOM 8 N NE . ARG 28 28 ? A 26.875 -1.770 -1.987 1 1 A ARG 0.690 1
ATOM 9 C CZ . ARG 28 28 ? A 27.003 -0.932 -3.025 1 1 A ARG 0.690 1
ATOM 10 N NH1 . ARG 28 28 ? A 26.062 -0.040 -3.302 1 1 A ARG 0.690 1
ATOM 11 N NH2 . ARG 28 28 ? A 28.094 -0.961 -3.789 1 1 A ARG 0.690 1
ATOM 12 N N . ARG 29 29 ? A 22.669 -3.977 0.263 1 1 A ARG 0.600 1
ATOM 13 C CA . ARG 29 29 ? A 21.482 -3.260 -0.143 1 1 A ARG 0.600 1
ATOM 14 C C . ARG 29 29 ? A 21.802 -1.776 -0.098 1 1 A ARG 0.600 1
ATOM 15 O O . ARG 29 29 ? A 22.303 -1.285 0.907 1 1 A ARG 0.600 1
ATOM 16 C CB . ARG 29 29 ? A 20.338 -3.586 0.836 1 1 A ARG 0.600 1
ATOM 17 C CG . ARG 29 29 ? A 20.007 -5.090 0.935 1 1 A ARG 0.600 1
ATOM 18 C CD . ARG 29 29 ? A 18.869 -5.335 1.925 1 1 A ARG 0.600 1
ATOM 19 N NE . ARG 29 29 ? A 18.693 -6.813 2.090 1 1 A ARG 0.600 1
ATOM 20 C CZ . ARG 29 29 ? A 17.932 -7.348 3.055 1 1 A ARG 0.600 1
ATOM 21 N NH1 . ARG 29 29 ? A 17.304 -6.581 3.940 1 1 A ARG 0.600 1
ATOM 22 N NH2 . ARG 29 29 ? A 17.784 -8.668 3.135 1 1 A ARG 0.600 1
ATOM 23 N N . CYS 30 30 ? A 21.592 -1.050 -1.214 1 1 A CYS 0.410 1
ATOM 24 C CA . CYS 30 30 ? A 21.862 0.379 -1.307 1 1 A CYS 0.410 1
ATOM 25 C C . CYS 30 30 ? A 20.596 1.186 -0.977 1 1 A CYS 0.410 1
ATOM 26 O O . CYS 30 30 ? A 19.795 0.782 -0.140 1 1 A CYS 0.410 1
ATOM 27 C CB . CYS 30 30 ? A 22.444 0.705 -2.717 1 1 A CYS 0.410 1
ATOM 28 S SG . CYS 30 30 ? A 23.617 2.101 -2.722 1 1 A CYS 0.410 1
ATOM 29 N N . LEU 31 31 ? A 20.333 2.324 -1.658 1 1 A LEU 0.410 1
ATOM 30 C CA . LEU 31 31 ? A 19.173 3.207 -1.477 1 1 A LEU 0.410 1
ATOM 31 C C . LEU 31 31 ? A 17.827 2.530 -1.706 1 1 A LEU 0.410 1
ATOM 32 O O . LEU 31 31 ? A 16.789 2.920 -1.170 1 1 A LEU 0.410 1
ATOM 33 C CB . LEU 31 31 ? A 19.257 4.420 -2.443 1 1 A LEU 0.410 1
ATOM 34 C CG . LEU 31 31 ? A 20.277 5.520 -2.061 1 1 A LEU 0.410 1
ATOM 35 C CD1 . LEU 31 31 ? A 19.976 6.121 -0.677 1 1 A LEU 0.410 1
ATOM 36 C CD2 . LEU 31 31 ? A 21.752 5.097 -2.163 1 1 A LEU 0.410 1
ATOM 37 N N . CYS 32 32 ? A 17.858 1.427 -2.474 1 1 A CYS 0.480 1
ATOM 38 C CA . CYS 32 32 ? A 16.774 0.493 -2.676 1 1 A CYS 0.480 1
ATOM 39 C C . CYS 32 32 ? A 16.231 -0.121 -1.384 1 1 A CYS 0.480 1
ATOM 40 O O . CYS 32 32 ? A 15.111 -0.613 -1.360 1 1 A CYS 0.480 1
ATOM 41 C CB . CYS 32 32 ? A 17.197 -0.652 -3.631 1 1 A CYS 0.480 1
ATOM 42 S SG . CYS 32 32 ? A 17.738 -0.051 -5.263 1 1 A CYS 0.480 1
ATOM 43 N N . LEU 33 33 ? A 16.994 -0.067 -0.265 1 1 A LEU 0.450 1
ATOM 44 C CA . LEU 33 33 ? A 16.572 -0.471 1.067 1 1 A LEU 0.450 1
ATOM 45 C C . LEU 33 33 ? A 15.295 0.204 1.561 1 1 A LEU 0.450 1
ATOM 46 O O . LEU 33 33 ? A 14.346 -0.449 1.984 1 1 A LEU 0.450 1
ATOM 47 C CB . LEU 33 33 ? A 17.693 -0.076 2.065 1 1 A LEU 0.450 1
ATOM 48 C CG . LEU 33 33 ? A 17.619 -0.771 3.433 1 1 A LEU 0.450 1
ATOM 49 C CD1 . LEU 33 33 ? A 18.264 -2.152 3.302 1 1 A LEU 0.450 1
ATOM 50 C CD2 . LEU 33 33 ? A 18.353 0.043 4.507 1 1 A LEU 0.450 1
ATOM 51 N N . SER 34 34 ? A 15.237 1.552 1.468 1 1 A SER 0.600 1
ATOM 52 C CA . SER 34 34 ? A 14.058 2.327 1.833 1 1 A SER 0.600 1
ATOM 53 C C . SER 34 34 ? A 13.054 2.301 0.702 1 1 A SER 0.600 1
ATOM 54 O O . SER 34 34 ? A 11.847 2.298 0.914 1 1 A SER 0.600 1
ATOM 55 C CB . SER 34 34 ? A 14.410 3.795 2.205 1 1 A SER 0.600 1
ATOM 56 O OG . SER 34 34 ? A 13.274 4.508 2.698 1 1 A SER 0.600 1
ATOM 57 N N . LEU 35 35 ? A 13.531 2.191 -0.561 1 1 A LEU 0.610 1
ATOM 58 C CA . LEU 35 35 ? A 12.654 2.104 -1.717 1 1 A LEU 0.610 1
ATOM 59 C C . LEU 35 35 ? A 11.762 0.862 -1.669 1 1 A LEU 0.610 1
ATOM 60 O O . LEU 35 35 ? A 10.574 0.889 -1.978 1 1 A LEU 0.610 1
ATOM 61 C CB . LEU 35 35 ? A 13.455 2.202 -3.038 1 1 A LEU 0.610 1
ATOM 62 C CG . LEU 35 35 ? A 12.662 2.499 -4.340 1 1 A LEU 0.610 1
ATOM 63 C CD1 . LEU 35 35 ? A 12.069 1.238 -4.999 1 1 A LEU 0.610 1
ATOM 64 C CD2 . LEU 35 35 ? A 11.607 3.609 -4.176 1 1 A LEU 0.610 1
ATOM 65 N N . PHE 36 36 ? A 12.301 -0.271 -1.192 1 1 A PHE 0.620 1
ATOM 66 C CA . PHE 36 36 ? A 11.564 -1.503 -1.032 1 1 A PHE 0.620 1
ATOM 67 C C . PHE 36 36 ? A 10.415 -1.415 -0.005 1 1 A PHE 0.620 1
ATOM 68 O O . PHE 36 36 ? A 9.404 -2.105 -0.106 1 1 A PHE 0.620 1
ATOM 69 C CB . PHE 36 36 ? A 12.575 -2.639 -0.755 1 1 A PHE 0.620 1
ATOM 70 C CG . PHE 36 36 ? A 11.902 -3.983 -0.765 1 1 A PHE 0.620 1
ATOM 71 C CD1 . PHE 36 36 ? A 11.518 -4.604 -1.967 1 1 A PHE 0.620 1
ATOM 72 C CD2 . PHE 36 36 ? A 11.584 -4.601 0.452 1 1 A PHE 0.620 1
ATOM 73 C CE1 . PHE 36 36 ? A 10.865 -5.845 -1.947 1 1 A PHE 0.620 1
ATOM 74 C CE2 . PHE 36 36 ? A 10.927 -5.835 0.476 1 1 A PHE 0.620 1
ATOM 75 C CZ . PHE 36 36 ? A 10.580 -6.466 -0.724 1 1 A PHE 0.620 1
ATOM 76 N N . SER 37 37 ? A 10.518 -0.500 0.984 1 1 A SER 0.710 1
ATOM 77 C CA . SER 37 37 ? A 9.522 -0.271 2.029 1 1 A SER 0.710 1
ATOM 78 C C . SER 37 37 ? A 8.193 0.221 1.457 1 1 A SER 0.710 1
ATOM 79 O O . SER 37 37 ? A 7.109 -0.127 1.925 1 1 A SER 0.710 1
ATOM 80 C CB . SER 37 37 ? A 10.075 0.712 3.099 1 1 A SER 0.710 1
ATOM 81 O OG . SER 37 37 ? A 9.249 0.788 4.262 1 1 A SER 0.710 1
ATOM 82 N N . PHE 38 38 ? A 8.245 1.002 0.350 1 1 A PHE 0.670 1
ATOM 83 C CA . PHE 38 38 ? A 7.070 1.512 -0.343 1 1 A PHE 0.670 1
ATOM 84 C C . PHE 38 38 ? A 6.179 0.408 -0.900 1 1 A PHE 0.670 1
ATOM 85 O O . PHE 38 38 ? A 4.958 0.519 -0.890 1 1 A PHE 0.670 1
ATOM 86 C CB . PHE 38 38 ? A 7.404 2.497 -1.489 1 1 A PHE 0.670 1
ATOM 87 C CG . PHE 38 38 ? A 8.050 3.733 -0.928 1 1 A PHE 0.670 1
ATOM 88 C CD1 . PHE 38 38 ? A 9.438 3.855 -0.985 1 1 A PHE 0.670 1
ATOM 89 C CD2 . PHE 38 38 ? A 7.309 4.770 -0.336 1 1 A PHE 0.670 1
ATOM 90 C CE1 . PHE 38 38 ? A 10.097 4.980 -0.490 1 1 A PHE 0.670 1
ATOM 91 C CE2 . PHE 38 38 ? A 7.957 5.915 0.154 1 1 A PHE 0.670 1
ATOM 92 C CZ . PHE 38 38 ? A 9.353 6.021 0.071 1 1 A PHE 0.670 1
ATOM 93 N N . LEU 39 39 ? A 6.773 -0.708 -1.372 1 1 A LEU 0.680 1
ATOM 94 C CA . LEU 39 39 ? A 6.071 -1.850 -1.931 1 1 A LEU 0.680 1
ATOM 95 C C . LEU 39 39 ? A 5.248 -2.590 -0.882 1 1 A LEU 0.680 1
ATOM 96 O O . LEU 39 39 ? A 4.224 -3.194 -1.187 1 1 A LEU 0.680 1
ATOM 97 C CB . LEU 39 39 ? A 7.051 -2.846 -2.614 1 1 A LEU 0.680 1
ATOM 98 C CG . LEU 39 39 ? A 7.686 -2.360 -3.941 1 1 A LEU 0.680 1
ATOM 99 C CD1 . LEU 39 39 ? A 8.827 -1.354 -3.743 1 1 A LEU 0.680 1
ATOM 100 C CD2 . LEU 39 39 ? A 8.259 -3.559 -4.716 1 1 A LEU 0.680 1
ATOM 101 N N . LEU 40 40 ? A 5.676 -2.542 0.395 1 1 A LEU 0.650 1
ATOM 102 C CA . LEU 40 40 ? A 4.951 -3.129 1.502 1 1 A LEU 0.650 1
ATOM 103 C C . LEU 40 40 ? A 3.810 -2.259 1.980 1 1 A LEU 0.650 1
ATOM 104 O O . LEU 40 40 ? A 2.674 -2.713 2.117 1 1 A LEU 0.650 1
ATOM 105 C CB . LEU 40 40 ? A 5.903 -3.331 2.698 1 1 A LEU 0.650 1
ATOM 106 C CG . LEU 40 40 ? A 7.048 -4.319 2.423 1 1 A LEU 0.650 1
ATOM 107 C CD1 . LEU 40 40 ? A 7.971 -4.358 3.648 1 1 A LEU 0.650 1
ATOM 108 C CD2 . LEU 40 40 ? A 6.517 -5.724 2.092 1 1 A LEU 0.650 1
ATOM 109 N N . VAL 41 41 ? A 4.076 -0.949 2.207 1 1 A VAL 0.740 1
ATOM 110 C CA . VAL 41 41 ? A 3.064 -0.004 2.666 1 1 A VAL 0.740 1
ATOM 111 C C . VAL 41 41 ? A 1.950 0.163 1.645 1 1 A VAL 0.740 1
ATOM 112 O O . VAL 41 41 ? A 0.802 0.378 2.007 1 1 A VAL 0.740 1
ATOM 113 C CB . VAL 41 41 ? A 3.629 1.353 3.107 1 1 A VAL 0.740 1
ATOM 114 C CG1 . VAL 41 41 ? A 4.014 2.229 1.898 1 1 A VAL 0.740 1
ATOM 115 C CG2 . VAL 41 41 ? A 2.626 2.084 4.028 1 1 A VAL 0.740 1
ATOM 116 N N . ALA 42 42 ? A 2.258 -0.016 0.337 1 1 A ALA 0.770 1
ATOM 117 C CA . ALA 42 42 ? A 1.333 0.054 -0.777 1 1 A ALA 0.770 1
ATOM 118 C C . ALA 42 42 ? A 0.114 -0.851 -0.620 1 1 A ALA 0.770 1
ATOM 119 O O . ALA 42 42 ? A -0.994 -0.500 -0.998 1 1 A ALA 0.770 1
ATOM 120 C CB . ALA 42 42 ? A 2.073 -0.313 -2.084 1 1 A ALA 0.770 1
ATOM 121 N N . GLY 43 43 ? A 0.274 -2.047 -0.012 1 1 A GLY 0.710 1
ATOM 122 C CA . GLY 43 43 ? A -0.869 -2.902 0.298 1 1 A GLY 0.710 1
ATOM 123 C C . GLY 43 43 ? A -1.702 -2.414 1.463 1 1 A GLY 0.710 1
ATOM 124 O O . GLY 43 43 ? A -2.921 -2.559 1.471 1 1 A GLY 0.710 1
ATOM 125 N N . ALA 44 44 ? A -1.059 -1.800 2.479 1 1 A ALA 0.700 1
ATOM 126 C CA . ALA 44 44 ? A -1.718 -1.213 3.631 1 1 A ALA 0.700 1
ATOM 127 C C . ALA 44 44 ? A -2.527 0.031 3.257 1 1 A ALA 0.700 1
ATOM 128 O O . ALA 44 44 ? A -3.663 0.198 3.689 1 1 A ALA 0.700 1
ATOM 129 C CB . ALA 44 44 ? A -0.689 -0.892 4.743 1 1 A ALA 0.700 1
ATOM 130 N N . THR 45 45 ? A -1.977 0.911 2.388 1 1 A THR 0.720 1
ATOM 131 C CA . THR 45 45 ? A -2.628 2.121 1.886 1 1 A THR 0.720 1
ATOM 132 C C . THR 45 45 ? A -3.844 1.793 1.061 1 1 A THR 0.720 1
ATOM 133 O O . THR 45 45 ? A -4.859 2.481 1.148 1 1 A THR 0.720 1
ATOM 134 C CB . THR 45 45 ? A -1.730 3.056 1.076 1 1 A THR 0.720 1
ATOM 135 O OG1 . THR 45 45 ? A -1.139 2.400 -0.030 1 1 A THR 0.720 1
ATOM 136 C CG2 . THR 45 45 ? A -0.568 3.520 1.955 1 1 A THR 0.720 1
ATOM 137 N N . THR 46 46 ? A -3.791 0.682 0.287 1 1 A THR 0.730 1
ATOM 138 C CA . THR 46 46 ? A -4.899 0.190 -0.531 1 1 A THR 0.730 1
ATOM 139 C C . THR 46 46 ? A -6.125 -0.059 0.296 1 1 A THR 0.730 1
ATOM 140 O O . THR 46 46 ? A -7.211 0.322 -0.113 1 1 A THR 0.730 1
ATOM 141 C CB . THR 46 46 ? A -4.615 -1.083 -1.323 1 1 A THR 0.730 1
ATOM 142 O OG1 . THR 46 46 ? A -3.559 -0.839 -2.227 1 1 A THR 0.730 1
ATOM 143 C CG2 . THR 46 46 ? A -5.782 -1.485 -2.238 1 1 A THR 0.730 1
ATOM 144 N N . LEU 47 47 ? A -5.995 -0.640 1.511 1 1 A LEU 0.670 1
ATOM 145 C CA . LEU 47 47 ? A -7.124 -0.889 2.393 1 1 A LEU 0.670 1
ATOM 146 C C . LEU 47 47 ? A -7.880 0.386 2.775 1 1 A LEU 0.670 1
ATOM 147 O O . LEU 47 47 ? A -9.098 0.475 2.636 1 1 A LEU 0.670 1
ATOM 148 C CB . LEU 47 47 ? A -6.621 -1.621 3.670 1 1 A LEU 0.670 1
ATOM 149 C CG . LEU 47 47 ? A -7.666 -2.441 4.476 1 1 A LEU 0.670 1
ATOM 150 C CD1 . LEU 47 47 ? A -8.717 -1.606 5.234 1 1 A LEU 0.670 1
ATOM 151 C CD2 . LEU 47 47 ? A -8.336 -3.526 3.614 1 1 A LEU 0.670 1
ATOM 152 N N . PHE 48 48 ? A -7.153 1.445 3.190 1 1 A PHE 0.570 1
ATOM 153 C CA . PHE 48 48 ? A -7.724 2.744 3.519 1 1 A PHE 0.570 1
ATOM 154 C C . PHE 48 48 ? A -8.370 3.426 2.324 1 1 A PHE 0.570 1
ATOM 155 O O . PHE 48 48 ? A -9.495 3.922 2.385 1 1 A PHE 0.570 1
ATOM 156 C CB . PHE 48 48 ? A -6.624 3.693 4.057 1 1 A PHE 0.570 1
ATOM 157 C CG . PHE 48 48 ? A -6.243 3.304 5.453 1 1 A PHE 0.570 1
ATOM 158 C CD1 . PHE 48 48 ? A -5.130 2.487 5.694 1 1 A PHE 0.570 1
ATOM 159 C CD2 . PHE 48 48 ? A -6.995 3.770 6.543 1 1 A PHE 0.570 1
ATOM 160 C CE1 . PHE 48 48 ? A -4.775 2.132 7.001 1 1 A PHE 0.570 1
ATOM 161 C CE2 . PHE 48 48 ? A -6.630 3.438 7.854 1 1 A PHE 0.570 1
ATOM 162 C CZ . PHE 48 48 ? A -5.520 2.616 8.083 1 1 A PHE 0.570 1
ATOM 163 N N . CYS 49 49 ? A -7.676 3.413 1.169 1 1 A CYS 0.650 1
ATOM 164 C CA . CYS 49 49 ? A -8.164 4.012 -0.058 1 1 A CYS 0.650 1
ATOM 165 C C . CYS 49 49 ? A -9.333 3.242 -0.671 1 1 A CYS 0.650 1
ATOM 166 O O . CYS 49 49 ? A -10.123 3.800 -1.424 1 1 A CYS 0.650 1
ATOM 167 C CB . CYS 49 49 ? A -7.029 4.144 -1.108 1 1 A CYS 0.650 1
ATOM 168 S SG . CYS 49 49 ? A -5.693 5.265 -0.578 1 1 A CYS 0.650 1
ATOM 169 N N . LEU 50 50 ? A -9.505 1.946 -0.330 1 1 A LEU 0.560 1
ATOM 170 C CA . LEU 50 50 ? A -10.602 1.097 -0.758 1 1 A LEU 0.560 1
ATOM 171 C C . LEU 50 50 ? A -11.972 1.579 -0.305 1 1 A LEU 0.560 1
ATOM 172 O O . LEU 50 50 ? A -12.927 1.687 -1.070 1 1 A LEU 0.560 1
ATOM 173 C CB . LEU 50 50 ? A -10.403 -0.324 -0.167 1 1 A LEU 0.560 1
ATOM 174 C CG . LEU 50 50 ? A -10.796 -1.454 -1.122 1 1 A LEU 0.560 1
ATOM 175 C CD1 . LEU 50 50 ? A -9.771 -1.584 -2.259 1 1 A LEU 0.560 1
ATOM 176 C CD2 . LEU 50 50 ? A -10.936 -2.774 -0.349 1 1 A LEU 0.560 1
ATOM 177 N N . LEU 51 51 ? A -12.067 1.928 0.993 1 1 A LEU 0.510 1
ATOM 178 C CA . LEU 51 51 ? A -13.264 2.463 1.610 1 1 A LEU 0.510 1
ATOM 179 C C . LEU 51 51 ? A -13.546 3.877 1.148 1 1 A LEU 0.510 1
ATOM 180 O O . LEU 51 51 ? A -14.693 4.287 1.019 1 1 A LEU 0.510 1
ATOM 181 C CB . LEU 51 51 ? A -13.162 2.454 3.153 1 1 A LEU 0.510 1
ATOM 182 C CG . LEU 51 51 ? A -12.740 1.106 3.777 1 1 A LEU 0.510 1
ATOM 183 C CD1 . LEU 51 51 ? A -12.635 1.261 5.302 1 1 A LEU 0.510 1
ATOM 184 C CD2 . LEU 51 51 ? A -13.694 -0.045 3.418 1 1 A LEU 0.510 1
ATOM 185 N N . HIS 52 52 ? A -12.471 4.635 0.849 1 1 A HIS 0.480 1
ATOM 186 C CA . HIS 52 52 ? A -12.535 5.974 0.298 1 1 A HIS 0.480 1
ATOM 187 C C . HIS 52 52 ? A -13.055 5.991 -1.135 1 1 A HIS 0.480 1
ATOM 188 O O . HIS 52 52 ? A -13.619 6.976 -1.591 1 1 A HIS 0.480 1
ATOM 189 C CB . HIS 52 52 ? A -11.131 6.620 0.302 1 1 A HIS 0.480 1
ATOM 190 C CG . HIS 52 52 ? A -11.138 8.078 -0.012 1 1 A HIS 0.480 1
ATOM 191 N ND1 . HIS 52 52 ? A -11.190 8.977 1.032 1 1 A HIS 0.480 1
ATOM 192 C CD2 . HIS 52 52 ? A -11.133 8.732 -1.201 1 1 A HIS 0.480 1
ATOM 193 C CE1 . HIS 52 52 ? A -11.216 10.159 0.462 1 1 A HIS 0.480 1
ATOM 194 N NE2 . HIS 52 52 ? A -11.183 10.075 -0.892 1 1 A HIS 0.480 1
ATOM 195 N N . PHE 53 53 ? A -12.846 4.889 -1.890 1 1 A PHE 0.460 1
ATOM 196 C CA . PHE 53 53 ? A -13.312 4.777 -3.266 1 1 A PHE 0.460 1
ATOM 197 C C . PHE 53 53 ? A -14.775 4.358 -3.354 1 1 A PHE 0.460 1
ATOM 198 O O . PHE 53 53 ? A -15.402 4.700 -4.381 1 1 A PHE 0.460 1
ATOM 199 C CB . PHE 53 53 ? A -12.434 3.750 -4.047 1 1 A PHE 0.460 1
ATOM 200 C CG . PHE 53 53 ? A -12.715 3.777 -5.541 1 1 A PHE 0.460 1
ATOM 201 C CD1 . PHE 53 53 ? A -12.035 4.696 -6.353 1 1 A PHE 0.460 1
ATOM 202 C CD2 . PHE 53 53 ? A -13.702 2.963 -6.134 1 1 A PHE 0.460 1
ATOM 203 C CE1 . PHE 53 53 ? A -12.303 4.782 -7.726 1 1 A PHE 0.460 1
ATOM 204 C CE2 . PHE 53 53 ? A -13.985 3.056 -7.503 1 1 A PHE 0.460 1
ATOM 205 C CZ . PHE 53 53 ? A -13.272 3.955 -8.304 1 1 A PHE 0.460 1
ATOM 206 N N . GLU 54 54 ? A -15.330 3.652 -2.350 1 1 A GLU 0.470 1
ATOM 207 C CA . GLU 54 54 ? A -16.687 3.081 -2.252 1 1 A GLU 0.470 1
ATOM 208 C C . GLU 54 54 ? A -16.726 1.578 -2.574 1 1 A GLU 0.470 1
ATOM 209 O O . GLU 54 54 ? A -17.743 1.013 -2.978 1 1 A GLU 0.470 1
ATOM 210 C CB . GLU 54 54 ? A -17.779 3.893 -3.039 1 1 A GLU 0.470 1
ATOM 211 C CG . GLU 54 54 ? A -19.302 3.621 -2.852 1 1 A GLU 0.470 1
ATOM 212 C CD . GLU 54 54 ? A -20.135 4.542 -3.756 1 1 A GLU 0.470 1
ATOM 213 O OE1 . GLU 54 54 ? A -21.384 4.387 -3.744 1 1 A GLU 0.470 1
ATOM 214 O OE2 . GLU 54 54 ? A -19.545 5.404 -4.455 1 1 A GLU 0.470 1
ATOM 215 N N . VAL 55 55 ? A -15.633 0.805 -2.370 1 1 A VAL 0.520 1
ATOM 216 C CA . VAL 55 55 ? A -15.611 -0.615 -2.741 1 1 A VAL 0.520 1
ATOM 217 C C . VAL 55 55 ? A -16.319 -1.536 -1.725 1 1 A VAL 0.520 1
ATOM 218 O O . VAL 55 55 ? A -15.735 -2.441 -1.127 1 1 A VAL 0.520 1
ATOM 219 C CB . VAL 55 55 ? A -14.196 -1.114 -3.014 1 1 A VAL 0.520 1
ATOM 220 C CG1 . VAL 55 55 ? A -14.226 -2.482 -3.735 1 1 A VAL 0.520 1
ATOM 221 C CG2 . VAL 55 55 ? A -13.442 -0.096 -3.897 1 1 A VAL 0.520 1
ATOM 222 N N . ILE 56 56 ? A -17.624 -1.327 -1.481 1 1 A ILE 0.470 1
ATOM 223 C CA . ILE 56 56 ? A -18.360 -2.000 -0.423 1 1 A ILE 0.470 1
ATOM 224 C C . ILE 56 56 ? A -19.433 -2.865 -1.056 1 1 A ILE 0.470 1
ATOM 225 O O . ILE 56 56 ? A -20.582 -2.469 -1.237 1 1 A ILE 0.470 1
ATOM 226 C CB . ILE 56 56 ? A -18.958 -1.043 0.607 1 1 A ILE 0.470 1
ATOM 227 C CG1 . ILE 56 56 ? A -17.984 0.101 1.012 1 1 A ILE 0.470 1
ATOM 228 C CG2 . ILE 56 56 ? A -19.412 -1.865 1.838 1 1 A ILE 0.470 1
ATOM 229 C CD1 . ILE 56 56 ? A -16.650 -0.338 1.633 1 1 A ILE 0.470 1
ATOM 230 N N . GLY 57 57 ? A -19.071 -4.096 -1.453 1 1 A GLY 0.280 1
ATOM 231 C CA . GLY 57 57 ? A -20.044 -4.995 -2.057 1 1 A GLY 0.280 1
ATOM 232 C C . GLY 57 57 ? A -19.697 -6.427 -1.799 1 1 A GLY 0.280 1
ATOM 233 O O . GLY 57 57 ? A -20.311 -7.007 -0.909 1 1 A GLY 0.280 1
ATOM 234 N N . PRO 58 58 ? A -18.738 -7.040 -2.497 1 1 A PRO 0.340 1
ATOM 235 C CA . PRO 58 58 ? A -18.440 -8.459 -2.333 1 1 A PRO 0.340 1
ATOM 236 C C . PRO 58 58 ? A -17.806 -8.735 -0.983 1 1 A PRO 0.340 1
ATOM 237 O O . PRO 58 58 ? A -18.415 -9.453 -0.197 1 1 A PRO 0.340 1
ATOM 238 C CB . PRO 58 58 ? A -17.495 -8.793 -3.512 1 1 A PRO 0.340 1
ATOM 239 C CG . PRO 58 58 ? A -16.921 -7.442 -3.969 1 1 A PRO 0.340 1
ATOM 240 C CD . PRO 58 58 ? A -18.042 -6.454 -3.643 1 1 A PRO 0.340 1
ATOM 241 N N . GLN 59 59 ? A -16.644 -8.103 -0.720 1 1 A GLN 0.660 1
ATOM 242 C CA . GLN 59 59 ? A -15.851 -8.246 0.482 1 1 A GLN 0.660 1
ATOM 243 C C . GLN 59 59 ? A -15.203 -9.646 0.679 1 1 A GLN 0.660 1
ATOM 244 O O . GLN 59 59 ? A -15.274 -10.494 -0.248 1 1 A GLN 0.660 1
ATOM 245 C CB . GLN 59 59 ? A -16.592 -7.693 1.727 1 1 A GLN 0.660 1
ATOM 246 C CG . GLN 59 59 ? A -16.977 -6.199 1.576 1 1 A GLN 0.660 1
ATOM 247 C CD . GLN 59 59 ? A -17.796 -5.709 2.766 1 1 A GLN 0.660 1
ATOM 248 O OE1 . GLN 59 59 ? A -17.281 -5.190 3.754 1 1 A GLN 0.660 1
ATOM 249 N NE2 . GLN 59 59 ? A -19.139 -5.849 2.668 1 1 A GLN 0.660 1
ATOM 250 O OXT . GLN 59 59 ? A -14.543 -9.827 1.739 1 1 A GLN 0.660 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.581
2 1 3 0.005
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 28 ARG 1 0.690
2 1 A 29 ARG 1 0.600
3 1 A 30 CYS 1 0.410
4 1 A 31 LEU 1 0.410
5 1 A 32 CYS 1 0.480
6 1 A 33 LEU 1 0.450
7 1 A 34 SER 1 0.600
8 1 A 35 LEU 1 0.610
9 1 A 36 PHE 1 0.620
10 1 A 37 SER 1 0.710
11 1 A 38 PHE 1 0.670
12 1 A 39 LEU 1 0.680
13 1 A 40 LEU 1 0.650
14 1 A 41 VAL 1 0.740
15 1 A 42 ALA 1 0.770
16 1 A 43 GLY 1 0.710
17 1 A 44 ALA 1 0.700
18 1 A 45 THR 1 0.720
19 1 A 46 THR 1 0.730
20 1 A 47 LEU 1 0.670
21 1 A 48 PHE 1 0.570
22 1 A 49 CYS 1 0.650
23 1 A 50 LEU 1 0.560
24 1 A 51 LEU 1 0.510
25 1 A 52 HIS 1 0.480
26 1 A 53 PHE 1 0.460
27 1 A 54 GLU 1 0.470
28 1 A 55 VAL 1 0.520
29 1 A 56 ILE 1 0.470
30 1 A 57 GLY 1 0.280
31 1 A 58 PRO 1 0.340
32 1 A 59 GLN 1 0.660
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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