data_SMR-ea16cb51ea55a306a4c82516646bfcc0_1
_entry.id SMR-ea16cb51ea55a306a4c82516646bfcc0_1
_struct.entry_id SMR-ea16cb51ea55a306a4c82516646bfcc0_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - Q9H1J1 (isoform 2)/ REN3A_HUMAN, Regulator of nonsense transcripts 3A

Estimated model accuracy of this model is 0.044, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries Q9H1J1 (isoform 2)'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2024-10.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 5 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 19852.008 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP REN3A_HUMAN Q9H1J1 1
;MEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQD
RGKKGSQDSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGS
GTGPEKREEAE
;
'Regulator of nonsense transcripts 3A'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 151 1 151
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . REN3A_HUMAN Q9H1J1 Q9H1J1-2 1 151 9606 'Homo sapiens (Human)' 2001-03-01
A1CD017051B33DEA
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no C
;MEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQD
RGKKGSQDSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGS
GTGPEKREEAE
;

;MEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQD
RGKKGSQDSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGS
GTGPEKREEAE
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 GLU .
1 3 GLY .
1 4 SER .
1 5 LEU .
1 6 GLU .
1 7 GLU .
1 8 PRO .
1 9 GLN .
1 10 GLU .
1 11 THR .
1 12 SER .
1 13 HIS .
1 14 SER .
1 15 GLY .
1 16 SER .
1 17 ASP .
1 18 LYS .
1 19 GLU .
1 20 HIS .
1 21 ARG .
1 22 ASP .
1 23 VAL .
1 24 GLU .
1 25 ARG .
1 26 SER .
1 27 GLN .
1 28 GLU .
1 29 GLN .
1 30 GLU .
1 31 SER .
1 32 GLU .
1 33 ALA .
1 34 GLN .
1 35 ARG .
1 36 TYR .
1 37 HIS .
1 38 VAL .
1 39 ASP .
1 40 ASP .
1 41 GLY .
1 42 ARG .
1 43 ARG .
1 44 HIS .
1 45 ARG .
1 46 ALA .
1 47 HIS .
1 48 HIS .
1 49 GLU .
1 50 PRO .
1 51 GLU .
1 52 ARG .
1 53 LEU .
1 54 SER .
1 55 ARG .
1 56 ARG .
1 57 SER .
1 58 GLU .
1 59 ASP .
1 60 GLU .
1 61 GLN .
1 62 ARG .
1 63 TRP .
1 64 GLY .
1 65 LYS .
1 66 GLY .
1 67 PRO .
1 68 GLY .
1 69 GLN .
1 70 ASP .
1 71 ARG .
1 72 GLY .
1 73 LYS .
1 74 LYS .
1 75 GLY .
1 76 SER .
1 77 GLN .
1 78 ASP .
1 79 SER .
1 80 GLY .
1 81 ALA .
1 82 PRO .
1 83 GLY .
1 84 GLU .
1 85 ALA .
1 86 MET .
1 87 GLU .
1 88 ARG .
1 89 LEU .
1 90 GLY .
1 91 ARG .
1 92 ALA .
1 93 GLN .
1 94 ARG .
1 95 CYS .
1 96 ASP .
1 97 ASP .
1 98 SER .
1 99 PRO .
1 100 ALA .
1 101 PRO .
1 102 ARG .
1 103 LYS .
1 104 GLU .
1 105 ARG .
1 106 LEU .
1 107 ALA .
1 108 ASN .
1 109 LYS .
1 110 ASP .
1 111 ARG .
1 112 PRO .
1 113 ALA .
1 114 LEU .
1 115 GLN .
1 116 LEU .
1 117 TYR .
1 118 ASP .
1 119 PRO .
1 120 GLY .
1 121 ALA .
1 122 ARG .
1 123 PHE .
1 124 ARG .
1 125 ALA .
1 126 ARG .
1 127 GLU .
1 128 CYS .
1 129 GLY .
1 130 GLY .
1 131 ASN .
1 132 ARG .
1 133 ARG .
1 134 ILE .
1 135 CYS .
1 136 LYS .
1 137 ALA .
1 138 GLU .
1 139 GLY .
1 140 SER .
1 141 GLY .
1 142 THR .
1 143 GLY .
1 144 PRO .
1 145 GLU .
1 146 LYS .
1 147 ARG .
1 148 GLU .
1 149 GLU .
1 150 ALA .
1 151 GLU .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? C .
A 1 2 GLU 2 ? ? ? C .
A 1 3 GLY 3 ? ? ? C .
A 1 4 SER 4 ? ? ? C .
A 1 5 LEU 5 ? ? ? C .
A 1 6 GLU 6 ? ? ? C .
A 1 7 GLU 7 ? ? ? C .
A 1 8 PRO 8 ? ? ? C .
A 1 9 GLN 9 ? ? ? C .
A 1 10 GLU 10 ? ? ? C .
A 1 11 THR 11 ? ? ? C .
A 1 12 SER 12 ? ? ? C .
A 1 13 HIS 13 ? ? ? C .
A 1 14 SER 14 ? ? ? C .
A 1 15 GLY 15 ? ? ? C .
A 1 16 SER 16 ? ? ? C .
A 1 17 ASP 17 ? ? ? C .
A 1 18 LYS 18 ? ? ? C .
A 1 19 GLU 19 ? ? ? C .
A 1 20 HIS 20 ? ? ? C .
A 1 21 ARG 21 ? ? ? C .
A 1 22 ASP 22 ? ? ? C .
A 1 23 VAL 23 ? ? ? C .
A 1 24 GLU 24 ? ? ? C .
A 1 25 ARG 25 ? ? ? C .
A 1 26 SER 26 ? ? ? C .
A 1 27 GLN 27 ? ? ? C .
A 1 28 GLU 28 ? ? ? C .
A 1 29 GLN 29 ? ? ? C .
A 1 30 GLU 30 ? ? ? C .
A 1 31 SER 31 ? ? ? C .
A 1 32 GLU 32 ? ? ? C .
A 1 33 ALA 33 ? ? ? C .
A 1 34 GLN 34 ? ? ? C .
A 1 35 ARG 35 ? ? ? C .
A 1 36 TYR 36 ? ? ? C .
A 1 37 HIS 37 ? ? ? C .
A 1 38 VAL 38 ? ? ? C .
A 1 39 ASP 39 ? ? ? C .
A 1 40 ASP 40 ? ? ? C .
A 1 41 GLY 41 ? ? ? C .
A 1 42 ARG 42 ? ? ? C .
A 1 43 ARG 43 ? ? ? C .
A 1 44 HIS 44 ? ? ? C .
A 1 45 ARG 45 ? ? ? C .
A 1 46 ALA 46 ? ? ? C .
A 1 47 HIS 47 ? ? ? C .
A 1 48 HIS 48 ? ? ? C .
A 1 49 GLU 49 ? ? ? C .
A 1 50 PRO 50 ? ? ? C .
A 1 51 GLU 51 ? ? ? C .
A 1 52 ARG 52 ? ? ? C .
A 1 53 LEU 53 ? ? ? C .
A 1 54 SER 54 ? ? ? C .
A 1 55 ARG 55 ? ? ? C .
A 1 56 ARG 56 ? ? ? C .
A 1 57 SER 57 ? ? ? C .
A 1 58 GLU 58 ? ? ? C .
A 1 59 ASP 59 ? ? ? C .
A 1 60 GLU 60 ? ? ? C .
A 1 61 GLN 61 ? ? ? C .
A 1 62 ARG 62 ? ? ? C .
A 1 63 TRP 63 ? ? ? C .
A 1 64 GLY 64 ? ? ? C .
A 1 65 LYS 65 ? ? ? C .
A 1 66 GLY 66 ? ? ? C .
A 1 67 PRO 67 ? ? ? C .
A 1 68 GLY 68 ? ? ? C .
A 1 69 GLN 69 ? ? ? C .
A 1 70 ASP 70 ? ? ? C .
A 1 71 ARG 71 ? ? ? C .
A 1 72 GLY 72 ? ? ? C .
A 1 73 LYS 73 ? ? ? C .
A 1 74 LYS 74 ? ? ? C .
A 1 75 GLY 75 ? ? ? C .
A 1 76 SER 76 ? ? ? C .
A 1 77 GLN 77 ? ? ? C .
A 1 78 ASP 78 ? ? ? C .
A 1 79 SER 79 ? ? ? C .
A 1 80 GLY 80 ? ? ? C .
A 1 81 ALA 81 ? ? ? C .
A 1 82 PRO 82 ? ? ? C .
A 1 83 GLY 83 ? ? ? C .
A 1 84 GLU 84 ? ? ? C .
A 1 85 ALA 85 ? ? ? C .
A 1 86 MET 86 ? ? ? C .
A 1 87 GLU 87 ? ? ? C .
A 1 88 ARG 88 ? ? ? C .
A 1 89 LEU 89 ? ? ? C .
A 1 90 GLY 90 ? ? ? C .
A 1 91 ARG 91 ? ? ? C .
A 1 92 ALA 92 ? ? ? C .
A 1 93 GLN 93 ? ? ? C .
A 1 94 ARG 94 ? ? ? C .
A 1 95 CYS 95 ? ? ? C .
A 1 96 ASP 96 ? ? ? C .
A 1 97 ASP 97 ? ? ? C .
A 1 98 SER 98 ? ? ? C .
A 1 99 PRO 99 ? ? ? C .
A 1 100 ALA 100 ? ? ? C .
A 1 101 PRO 101 ? ? ? C .
A 1 102 ARG 102 ? ? ? C .
A 1 103 LYS 103 ? ? ? C .
A 1 104 GLU 104 ? ? ? C .
A 1 105 ARG 105 ? ? ? C .
A 1 106 LEU 106 106 LEU LEU C .
A 1 107 ALA 107 107 ALA ALA C .
A 1 108 ASN 108 108 ASN ASN C .
A 1 109 LYS 109 109 LYS LYS C .
A 1 110 ASP 110 110 ASP ASP C .
A 1 111 ARG 111 111 ARG ARG C .
A 1 112 PRO 112 112 PRO PRO C .
A 1 113 ALA 113 113 ALA ALA C .
A 1 114 LEU 114 114 LEU LEU C .
A 1 115 GLN 115 115 GLN GLN C .
A 1 116 LEU 116 116 LEU LEU C .
A 1 117 TYR 117 117 TYR TYR C .
A 1 118 ASP 118 118 ASP ASP C .
A 1 119 PRO 119 119 PRO PRO C .
A 1 120 GLY 120 120 GLY GLY C .
A 1 121 ALA 121 121 ALA ALA C .
A 1 122 ARG 122 ? ? ? C .
A 1 123 PHE 123 ? ? ? C .
A 1 124 ARG 124 ? ? ? C .
A 1 125 ALA 125 ? ? ? C .
A 1 126 ARG 126 ? ? ? C .
A 1 127 GLU 127 ? ? ? C .
A 1 128 CYS 128 ? ? ? C .
A 1 129 GLY 129 ? ? ? C .
A 1 130 GLY 130 ? ? ? C .
A 1 131 ASN 131 ? ? ? C .
A 1 132 ARG 132 ? ? ? C .
A 1 133 ARG 133 ? ? ? C .
A 1 134 ILE 134 ? ? ? C .
A 1 135 CYS 135 ? ? ? C .
A 1 136 LYS 136 ? ? ? C .
A 1 137 ALA 137 ? ? ? C .
A 1 138 GLU 138 ? ? ? C .
A 1 139 GLY 139 ? ? ? C .
A 1 140 SER 140 ? ? ? C .
A 1 141 GLY 141 ? ? ? C .
A 1 142 THR 142 ? ? ? C .
A 1 143 GLY 143 ? ? ? C .
A 1 144 PRO 144 ? ? ? C .
A 1 145 GLU 145 ? ? ? C .
A 1 146 LYS 146 ? ? ? C .
A 1 147 ARG 147 ? ? ? C .
A 1 148 GLU 148 ? ? ? C .
A 1 149 GLU 149 ? ? ? C .
A 1 150 ALA 150 ? ? ? C .
A 1 151 GLU 151 ? ? ? C .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'REGULATOR OF NONSENSE TRANSCRIPTS 3B {PDB ID=2xb2, label_asym_id=J, auth_asym_id=U, SMTL ID=2xb2.1.C}'
'template structure' .
2 . target .
3 'Target-template alignment by BLAST to 2xb2, label_asym_id=J'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2024-12-25
6 PDB https://www.wwpdb.org . 2024-12-20
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A J 6 1 U
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 EVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAAERKQESGISHRKEGGEE
EVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAAERKQESGISHRKEGGEE
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 4 30
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 2xb2 2023-12-20
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 151
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 151 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'BLAST e-value' . 3.65e-05 62.963
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEKREEAE
2 1 2
-----------------------------------------------------------------------------------------------------KRDRIRNKDRPAMQLYQPGARSRNRLC-----------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 2xb2.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . LEU 106 106 ? A 51.259 8.180 8.127 1 1 C LEU 0.600 1
ATOM 2 C CA . LEU 106 106 ? A 50.508 9.257 7.392 1 1 C LEU 0.600 1
ATOM 3 C C . LEU 106 106 ? A 49.350 8.687 6.592 1 1 C LEU 0.600 1
ATOM 4 O O . LEU 106 106 ? A 49.469 7.573 6.081 1 1 C LEU 0.600 1
ATOM 5 C CB . LEU 106 106 ? A 51.486 9.969 6.419 1 1 C LEU 0.600 1
ATOM 6 C CG . LEU 106 106 ? A 52.577 10.816 7.102 1 1 C LEU 0.600 1
ATOM 7 C CD1 . LEU 106 106 ? A 53.561 11.397 6.077 1 1 C LEU 0.600 1
ATOM 8 C CD2 . LEU 106 106 ? A 51.951 11.961 7.904 1 1 C LEU 0.600 1
ATOM 9 N N . ALA 107 107 ? A 48.219 9.401 6.442 1 1 C ALA 0.600 1
ATOM 10 C CA . ALA 107 107 ? A 47.120 8.982 5.593 1 1 C ALA 0.600 1
ATOM 11 C C . ALA 107 107 ? A 47.306 9.628 4.221 1 1 C ALA 0.600 1
ATOM 12 O O . ALA 107 107 ? A 48.339 10.236 3.969 1 1 C ALA 0.600 1
ATOM 13 C CB . ALA 107 107 ? A 45.781 9.329 6.273 1 1 C ALA 0.600 1
ATOM 14 N N . ASN 108 108 ? A 46.365 9.452 3.266 1 1 C ASN 0.610 1
ATOM 15 C CA . ASN 108 108 ? A 46.403 10.113 1.965 1 1 C ASN 0.610 1
ATOM 16 C C . ASN 108 108 ? A 45.934 11.567 1.979 1 1 C ASN 0.610 1
ATOM 17 O O . ASN 108 108 ? A 46.236 12.317 1.067 1 1 C ASN 0.610 1
ATOM 18 C CB . ASN 108 108 ? A 45.558 9.329 0.926 1 1 C ASN 0.610 1
ATOM 19 C CG . ASN 108 108 ? A 46.126 7.952 0.581 1 1 C ASN 0.610 1
ATOM 20 O OD1 . ASN 108 108 ? A 45.374 7.029 0.293 1 1 C ASN 0.610 1
ATOM 21 N ND2 . ASN 108 108 ? A 47.469 7.789 0.589 1 1 C ASN 0.610 1
ATOM 22 N N . LYS 109 109 ? A 45.205 12.002 3.026 1 1 C LYS 0.600 1
ATOM 23 C CA . LYS 109 109 ? A 44.823 13.394 3.193 1 1 C LYS 0.600 1
ATOM 24 C C . LYS 109 109 ? A 45.987 14.295 3.567 1 1 C LYS 0.600 1
ATOM 25 O O . LYS 109 109 ? A 46.137 15.393 3.049 1 1 C LYS 0.600 1
ATOM 26 C CB . LYS 109 109 ? A 43.713 13.512 4.251 1 1 C LYS 0.600 1
ATOM 27 C CG . LYS 109 109 ? A 42.425 12.802 3.808 1 1 C LYS 0.600 1
ATOM 28 C CD . LYS 109 109 ? A 41.304 12.926 4.848 1 1 C LYS 0.600 1
ATOM 29 C CE . LYS 109 109 ? A 40.000 12.255 4.411 1 1 C LYS 0.600 1
ATOM 30 N NZ . LYS 109 109 ? A 38.988 12.370 5.485 1 1 C LYS 0.600 1
ATOM 31 N N . ASP 110 110 ? A 46.865 13.800 4.458 1 1 C ASP 0.570 1
ATOM 32 C CA . ASP 110 110 ? A 47.980 14.555 4.988 1 1 C ASP 0.570 1
ATOM 33 C C . ASP 110 110 ? A 49.245 14.301 4.166 1 1 C ASP 0.570 1
ATOM 34 O O . ASP 110 110 ? A 50.359 14.647 4.553 1 1 C ASP 0.570 1
ATOM 35 C CB . ASP 110 110 ? A 48.244 14.124 6.458 1 1 C ASP 0.570 1
ATOM 36 C CG . ASP 110 110 ? A 46.946 13.741 7.156 1 1 C ASP 0.570 1
ATOM 37 O OD1 . ASP 110 110 ? A 46.071 14.616 7.353 1 1 C ASP 0.570 1
ATOM 38 O OD2 . ASP 110 110 ? A 46.807 12.510 7.399 1 1 C ASP 0.570 1
ATOM 39 N N . ARG 111 111 ? A 49.106 13.644 2.996 1 1 C ARG 0.530 1
ATOM 40 C CA . ARG 111 111 ? A 50.227 13.244 2.175 1 1 C ARG 0.530 1
ATOM 41 C C . ARG 111 111 ? A 50.387 14.222 1.021 1 1 C ARG 0.530 1
ATOM 42 O O . ARG 111 111 ? A 49.379 14.576 0.411 1 1 C ARG 0.530 1
ATOM 43 C CB . ARG 111 111 ? A 50.059 11.797 1.645 1 1 C ARG 0.530 1
ATOM 44 C CG . ARG 111 111 ? A 51.409 11.139 1.304 1 1 C ARG 0.530 1
ATOM 45 C CD . ARG 111 111 ? A 51.410 9.637 1.009 1 1 C ARG 0.530 1
ATOM 46 N NE . ARG 111 111 ? A 50.952 8.926 2.262 1 1 C ARG 0.530 1
ATOM 47 C CZ . ARG 111 111 ? A 51.389 7.719 2.654 1 1 C ARG 0.530 1
ATOM 48 N NH1 . ARG 111 111 ? A 52.384 7.098 2.021 1 1 C ARG 0.530 1
ATOM 49 N NH2 . ARG 111 111 ? A 50.851 7.087 3.693 1 1 C ARG 0.530 1
ATOM 50 N N . PRO 112 112 ? A 51.572 14.728 0.678 1 1 C PRO 0.530 1
ATOM 51 C CA . PRO 112 112 ? A 51.741 15.654 -0.438 1 1 C PRO 0.530 1
ATOM 52 C C . PRO 112 112 ? A 51.352 15.079 -1.792 1 1 C PRO 0.530 1
ATOM 53 O O . PRO 112 112 ? A 51.305 13.862 -1.967 1 1 C PRO 0.530 1
ATOM 54 C CB . PRO 112 112 ? A 53.235 16.015 -0.391 1 1 C PRO 0.530 1
ATOM 55 C CG . PRO 112 112 ? A 53.880 14.799 0.271 1 1 C PRO 0.530 1
ATOM 56 C CD . PRO 112 112 ? A 52.848 14.429 1.329 1 1 C PRO 0.530 1
ATOM 57 N N . ALA 113 113 ? A 51.076 15.966 -2.775 1 1 C ALA 0.560 1
ATOM 58 C CA . ALA 113 113 ? A 50.832 15.601 -4.154 1 1 C ALA 0.560 1
ATOM 59 C C . ALA 113 113 ? A 52.014 14.892 -4.796 1 1 C ALA 0.560 1
ATOM 60 O O . ALA 113 113 ? A 53.180 15.206 -4.526 1 1 C ALA 0.560 1
ATOM 61 C CB . ALA 113 113 ? A 50.445 16.847 -4.981 1 1 C ALA 0.560 1
ATOM 62 N N . LEU 114 114 ? A 51.739 13.895 -5.655 1 1 C LEU 0.480 1
ATOM 63 C CA . LEU 114 114 ? A 52.755 13.155 -6.371 1 1 C LEU 0.480 1
ATOM 64 C C . LEU 114 114 ? A 53.570 14.054 -7.291 1 1 C LEU 0.480 1
ATOM 65 O O . LEU 114 114 ? A 53.064 15.013 -7.869 1 1 C LEU 0.480 1
ATOM 66 C CB . LEU 114 114 ? A 52.136 11.949 -7.119 1 1 C LEU 0.480 1
ATOM 67 C CG . LEU 114 114 ? A 51.458 10.921 -6.185 1 1 C LEU 0.480 1
ATOM 68 C CD1 . LEU 114 114 ? A 50.713 9.858 -7.003 1 1 C LEU 0.480 1
ATOM 69 C CD2 . LEU 114 114 ? A 52.462 10.259 -5.227 1 1 C LEU 0.480 1
ATOM 70 N N . GLN 115 115 ? A 54.883 13.783 -7.415 1 1 C GLN 0.460 1
ATOM 71 C CA . GLN 115 115 ? A 55.786 14.547 -8.255 1 1 C GLN 0.460 1
ATOM 72 C C . GLN 115 115 ? A 55.406 14.499 -9.735 1 1 C GLN 0.460 1
ATOM 73 O O . GLN 115 115 ? A 55.570 13.495 -10.427 1 1 C GLN 0.460 1
ATOM 74 C CB . GLN 115 115 ? A 57.262 14.099 -8.068 1 1 C GLN 0.460 1
ATOM 75 C CG . GLN 115 115 ? A 57.902 14.465 -6.702 1 1 C GLN 0.460 1
ATOM 76 C CD . GLN 115 115 ? A 57.268 13.712 -5.531 1 1 C GLN 0.460 1
ATOM 77 O OE1 . GLN 115 115 ? A 57.062 12.500 -5.591 1 1 C GLN 0.460 1
ATOM 78 N NE2 . GLN 115 115 ? A 56.909 14.429 -4.442 1 1 C GLN 0.460 1
ATOM 79 N N . LEU 116 116 ? A 54.878 15.623 -10.245 1 1 C LEU 0.480 1
ATOM 80 C CA . LEU 116 116 ? A 54.498 15.804 -11.625 1 1 C LEU 0.480 1
ATOM 81 C C . LEU 116 116 ? A 55.679 16.287 -12.454 1 1 C LEU 0.480 1
ATOM 82 O O . LEU 116 116 ? A 56.685 16.781 -11.947 1 1 C LEU 0.480 1
ATOM 83 C CB . LEU 116 116 ? A 53.299 16.784 -11.720 1 1 C LEU 0.480 1
ATOM 84 C CG . LEU 116 116 ? A 51.916 16.127 -11.938 1 1 C LEU 0.480 1
ATOM 85 C CD1 . LEU 116 116 ? A 51.576 14.999 -10.952 1 1 C LEU 0.480 1
ATOM 86 C CD2 . LEU 116 116 ? A 50.822 17.201 -11.866 1 1 C LEU 0.480 1
ATOM 87 N N . TYR 117 117 ? A 55.577 16.132 -13.785 1 1 C TYR 0.430 1
ATOM 88 C CA . TYR 117 117 ? A 56.546 16.641 -14.726 1 1 C TYR 0.430 1
ATOM 89 C C . TYR 117 117 ? A 56.208 18.097 -15.050 1 1 C TYR 0.430 1
ATOM 90 O O . TYR 117 117 ? A 55.039 18.437 -15.243 1 1 C TYR 0.430 1
ATOM 91 C CB . TYR 117 117 ? A 56.531 15.736 -15.988 1 1 C TYR 0.430 1
ATOM 92 C CG . TYR 117 117 ? A 57.496 16.207 -17.033 1 1 C TYR 0.430 1
ATOM 93 C CD1 . TYR 117 117 ? A 58.867 15.945 -16.917 1 1 C TYR 0.430 1
ATOM 94 C CD2 . TYR 117 117 ? A 57.032 16.973 -18.112 1 1 C TYR 0.430 1
ATOM 95 C CE1 . TYR 117 117 ? A 59.761 16.425 -17.883 1 1 C TYR 0.430 1
ATOM 96 C CE2 . TYR 117 117 ? A 57.924 17.453 -19.079 1 1 C TYR 0.430 1
ATOM 97 C CZ . TYR 117 117 ? A 59.289 17.163 -18.971 1 1 C TYR 0.430 1
ATOM 98 O OH . TYR 117 117 ? A 60.194 17.607 -19.952 1 1 C TYR 0.430 1
ATOM 99 N N . ASP 118 118 ? A 57.228 18.970 -15.132 1 1 C ASP 0.480 1
ATOM 100 C CA . ASP 118 118 ? A 57.101 20.354 -15.514 1 1 C ASP 0.480 1
ATOM 101 C C . ASP 118 118 ? A 57.874 20.456 -16.845 1 1 C ASP 0.480 1
ATOM 102 O O . ASP 118 118 ? A 58.968 19.903 -16.940 1 1 C ASP 0.480 1
ATOM 103 C CB . ASP 118 118 ? A 57.650 21.266 -14.379 1 1 C ASP 0.480 1
ATOM 104 C CG . ASP 118 118 ? A 57.340 22.741 -14.602 1 1 C ASP 0.480 1
ATOM 105 O OD1 . ASP 118 118 ? A 56.831 23.381 -13.651 1 1 C ASP 0.480 1
ATOM 106 O OD2 . ASP 118 118 ? A 57.608 23.235 -15.728 1 1 C ASP 0.480 1
ATOM 107 N N . PRO 119 119 ? A 57.338 21.086 -17.897 1 1 C PRO 0.560 1
ATOM 108 C CA . PRO 119 119 ? A 58.012 21.233 -19.180 1 1 C PRO 0.560 1
ATOM 109 C C . PRO 119 119 ? A 58.828 22.516 -19.278 1 1 C PRO 0.560 1
ATOM 110 O O . PRO 119 119 ? A 59.344 22.779 -20.368 1 1 C PRO 0.560 1
ATOM 111 C CB . PRO 119 119 ? A 56.853 21.256 -20.195 1 1 C PRO 0.560 1
ATOM 112 C CG . PRO 119 119 ? A 55.722 21.907 -19.408 1 1 C PRO 0.560 1
ATOM 113 C CD . PRO 119 119 ? A 55.905 21.303 -18.024 1 1 C PRO 0.560 1
ATOM 114 N N . GLY 120 120 ? A 58.953 23.336 -18.216 1 1 C GLY 0.530 1
ATOM 115 C CA . GLY 120 120 ? A 59.755 24.565 -18.212 1 1 C GLY 0.530 1
ATOM 116 C C . GLY 120 120 ? A 61.242 24.430 -18.499 1 1 C GLY 0.530 1
ATOM 117 O O . GLY 120 120 ? A 61.910 23.524 -18.005 1 1 C GLY 0.530 1
ATOM 118 N N . ALA 121 121 ? A 61.816 25.382 -19.256 1 1 C ALA 0.300 1
ATOM 119 C CA . ALA 121 121 ? A 63.216 25.434 -19.584 1 1 C ALA 0.300 1
ATOM 120 C C . ALA 121 121 ? A 63.474 26.847 -20.180 1 1 C ALA 0.300 1
ATOM 121 O O . ALA 121 121 ? A 62.476 27.613 -20.320 1 1 C ALA 0.300 1
ATOM 122 C CB . ALA 121 121 ? A 63.600 24.349 -20.616 1 1 C ALA 0.300 1
ATOM 123 O OXT . ALA 121 121 ? A 64.650 27.171 -20.494 1 1 C ALA 0.300 1
#
#
loop_
_atom_type.symbol
C
N
O
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.520
2 1 3 0.044
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 106 LEU 1 0.600
2 1 A 107 ALA 1 0.600
3 1 A 108 ASN 1 0.610
4 1 A 109 LYS 1 0.600
5 1 A 110 ASP 1 0.570
6 1 A 111 ARG 1 0.530
7 1 A 112 PRO 1 0.530
8 1 A 113 ALA 1 0.560
9 1 A 114 LEU 1 0.480
10 1 A 115 GLN 1 0.460
11 1 A 116 LEU 1 0.480
12 1 A 117 TYR 1 0.430
13 1 A 118 ASP 1 0.480
14 1 A 119 PRO 1 0.560
15 1 A 120 GLY 1 0.530
16 1 A 121 ALA 1 0.300
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
1 license
;This SWISS-MODEL protein model is copyright.
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https://creativecommons.org/licenses/by-sa/4.0/legalcode
2 disclaimer
;The SWISS-MODEL SERVER produces theoretical models for
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NON-EXPERIMENTAL and MUST be considered with care. These models may
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#