data_SMR-978c17701d1abd8c30114b700bb70b6b_2
_entry.id SMR-978c17701d1abd8c30114b700bb70b6b_2
_struct.entry_id SMR-978c17701d1abd8c30114b700bb70b6b_2
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - Q76LS9 (isoform 2)/ MINY1_MOUSE, Ubiquitin carboxyl-terminal hydrolase MINDY-1

Estimated model accuracy of this model is 0.047, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries Q76LS9 (isoform 2)'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service'
3ef406dae3f6eb8b74980f2a6e69a2109acde4aa package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 38348.478 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP MINY1_MOUSE Q76LS9 1
;MKHGMVGGREGRLDQPSCLFSHQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHG
WLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLCELTAAATED
ELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEGG
GGSPEKQLQVDQDYLIALSLQQQQQPQGTLGLSDLELAQQLQQEEYQQQQAVQPVRTRAPSPQGRGATSG
RPAGERRQRSKTESDCVLL
;
'Ubiquitin carboxyl-terminal hydrolase MINDY-1'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 299 1 299
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . MINY1_MOUSE Q76LS9 Q76LS9-2 1 299 10090 'Mus musculus (Mouse)'
2004-07-05 BD046F6D2BB6DCB2
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no C
;MKHGMVGGREGRLDQPSCLFSHQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHG
WLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLCELTAAATED
ELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEGG
GGSPEKQLQVDQDYLIALSLQQQQQPQGTLGLSDLELAQQLQQEEYQQQQAVQPVRTRAPSPQGRGATSG
RPAGERRQRSKTESDCVLL
;

;MKHGMVGGREGRLDQPSCLFSHQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHG
WLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLCELTAAATED
ELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEGG
GGSPEKQLQVDQDYLIALSLQQQQQPQGTLGLSDLELAQQLQQEEYQQQQAVQPVRTRAPSPQGRGATSG
RPAGERRQRSKTESDCVLL
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 LYS .
1 3 HIS .
1 4 GLY .
1 5 MET .
1 6 VAL .
1 7 GLY .
1 8 GLY .
1 9 ARG .
1 10 GLU .
1 11 GLY .
1 12 ARG .
1 13 LEU .
1 14 ASP .
1 15 GLN .
1 16 PRO .
1 17 SER .
1 18 CYS .
1 19 LEU .
1 20 PHE .
1 21 SER .
1 22 HIS .
1 23 GLN .
1 24 ASN .
1 25 VAL .
1 26 ASP .
1 27 ASP .
1 28 ALA .
1 29 MET .
1 30 THR .
1 31 VAL .
1 32 LEU .
1 33 PRO .
1 34 LYS .
1 35 LEU .
1 36 ALA .
1 37 THR .
1 38 GLY .
1 39 LEU .
1 40 ASP .
1 41 VAL .
1 42 ASN .
1 43 VAL .
1 44 ARG .
1 45 PHE .
1 46 THR .
1 47 GLY .
1 48 VAL .
1 49 SER .
1 50 ASP .
1 51 PHE .
1 52 GLU .
1 53 TYR .
1 54 THR .
1 55 PRO .
1 56 GLU .
1 57 CYS .
1 58 SER .
1 59 ILE .
1 60 PHE .
1 61 ASP .
1 62 LEU .
1 63 LEU .
1 64 GLY .
1 65 ILE .
1 66 PRO .
1 67 LEU .
1 68 TYR .
1 69 HIS .
1 70 GLY .
1 71 TRP .
1 72 LEU .
1 73 VAL .
1 74 ASP .
1 75 PRO .
1 76 GLN .
1 77 SER .
1 78 PRO .
1 79 GLU .
1 80 ALA .
1 81 VAL .
1 82 SER .
1 83 ALA .
1 84 VAL .
1 85 GLY .
1 86 LYS .
1 87 LEU .
1 88 SER .
1 89 TYR .
1 90 ASN .
1 91 GLN .
1 92 LEU .
1 93 VAL .
1 94 GLU .
1 95 LYS .
1 96 ILE .
1 97 ILE .
1 98 THR .
1 99 CYS .
1 100 LYS .
1 101 HIS .
1 102 SER .
1 103 SER .
1 104 ASP .
1 105 SER .
1 106 ASN .
1 107 LEU .
1 108 VAL .
1 109 THR .
1 110 GLU .
1 111 GLY .
1 112 LEU .
1 113 VAL .
1 114 ALA .
1 115 GLU .
1 116 GLN .
1 117 PHE .
1 118 LEU .
1 119 GLU .
1 120 THR .
1 121 THR .
1 122 ALA .
1 123 ALA .
1 124 GLN .
1 125 LEU .
1 126 THR .
1 127 TYR .
1 128 HIS .
1 129 GLY .
1 130 LEU .
1 131 CYS .
1 132 GLU .
1 133 LEU .
1 134 THR .
1 135 ALA .
1 136 ALA .
1 137 ALA .
1 138 THR .
1 139 GLU .
1 140 ASP .
1 141 GLU .
1 142 LEU .
1 143 SER .
1 144 VAL .
1 145 PHE .
1 146 PHE .
1 147 ARG .
1 148 ASN .
1 149 ASN .
1 150 HIS .
1 151 PHE .
1 152 SER .
1 153 THR .
1 154 MET .
1 155 THR .
1 156 LYS .
1 157 HIS .
1 158 LYS .
1 159 SER .
1 160 HIS .
1 161 LEU .
1 162 TYR .
1 163 LEU .
1 164 LEU .
1 165 VAL .
1 166 THR .
1 167 ASP .
1 168 GLN .
1 169 GLY .
1 170 PHE .
1 171 LEU .
1 172 GLN .
1 173 GLU .
1 174 GLU .
1 175 GLN .
1 176 VAL .
1 177 VAL .
1 178 TRP .
1 179 GLU .
1 180 SER .
1 181 LEU .
1 182 HIS .
1 183 ASN .
1 184 VAL .
1 185 ASP .
1 186 GLY .
1 187 ASP .
1 188 SER .
1 189 CYS .
1 190 PHE .
1 191 CYS .
1 192 ASP .
1 193 SER .
1 194 ASP .
1 195 PHE .
1 196 HIS .
1 197 LEU .
1 198 SER .
1 199 HIS .
1 200 SER .
1 201 LEU .
1 202 GLY .
1 203 LYS .
1 204 SER .
1 205 HIS .
1 206 GLY .
1 207 ALA .
1 208 GLU .
1 209 GLY .
1 210 GLY .
1 211 GLY .
1 212 GLY .
1 213 SER .
1 214 PRO .
1 215 GLU .
1 216 LYS .
1 217 GLN .
1 218 LEU .
1 219 GLN .
1 220 VAL .
1 221 ASP .
1 222 GLN .
1 223 ASP .
1 224 TYR .
1 225 LEU .
1 226 ILE .
1 227 ALA .
1 228 LEU .
1 229 SER .
1 230 LEU .
1 231 GLN .
1 232 GLN .
1 233 GLN .
1 234 GLN .
1 235 GLN .
1 236 PRO .
1 237 GLN .
1 238 GLY .
1 239 THR .
1 240 LEU .
1 241 GLY .
1 242 LEU .
1 243 SER .
1 244 ASP .
1 245 LEU .
1 246 GLU .
1 247 LEU .
1 248 ALA .
1 249 GLN .
1 250 GLN .
1 251 LEU .
1 252 GLN .
1 253 GLN .
1 254 GLU .
1 255 GLU .
1 256 TYR .
1 257 GLN .
1 258 GLN .
1 259 GLN .
1 260 GLN .
1 261 ALA .
1 262 VAL .
1 263 GLN .
1 264 PRO .
1 265 VAL .
1 266 ARG .
1 267 THR .
1 268 ARG .
1 269 ALA .
1 270 PRO .
1 271 SER .
1 272 PRO .
1 273 GLN .
1 274 GLY .
1 275 ARG .
1 276 GLY .
1 277 ALA .
1 278 THR .
1 279 SER .
1 280 GLY .
1 281 ARG .
1 282 PRO .
1 283 ALA .
1 284 GLY .
1 285 GLU .
1 286 ARG .
1 287 ARG .
1 288 GLN .
1 289 ARG .
1 290 SER .
1 291 LYS .
1 292 THR .
1 293 GLU .
1 294 SER .
1 295 ASP .
1 296 CYS .
1 297 VAL .
1 298 LEU .
1 299 LEU .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? C .
A 1 2 LYS 2 ? ? ? C .
A 1 3 HIS 3 ? ? ? C .
A 1 4 GLY 4 ? ? ? C .
A 1 5 MET 5 ? ? ? C .
A 1 6 VAL 6 ? ? ? C .
A 1 7 GLY 7 ? ? ? C .
A 1 8 GLY 8 ? ? ? C .
A 1 9 ARG 9 ? ? ? C .
A 1 10 GLU 10 ? ? ? C .
A 1 11 GLY 11 ? ? ? C .
A 1 12 ARG 12 ? ? ? C .
A 1 13 LEU 13 ? ? ? C .
A 1 14 ASP 14 ? ? ? C .
A 1 15 GLN 15 ? ? ? C .
A 1 16 PRO 16 ? ? ? C .
A 1 17 SER 17 ? ? ? C .
A 1 18 CYS 18 ? ? ? C .
A 1 19 LEU 19 ? ? ? C .
A 1 20 PHE 20 ? ? ? C .
A 1 21 SER 21 ? ? ? C .
A 1 22 HIS 22 ? ? ? C .
A 1 23 GLN 23 ? ? ? C .
A 1 24 ASN 24 ? ? ? C .
A 1 25 VAL 25 ? ? ? C .
A 1 26 ASP 26 ? ? ? C .
A 1 27 ASP 27 ? ? ? C .
A 1 28 ALA 28 ? ? ? C .
A 1 29 MET 29 ? ? ? C .
A 1 30 THR 30 ? ? ? C .
A 1 31 VAL 31 ? ? ? C .
A 1 32 LEU 32 ? ? ? C .
A 1 33 PRO 33 ? ? ? C .
A 1 34 LYS 34 ? ? ? C .
A 1 35 LEU 35 ? ? ? C .
A 1 36 ALA 36 ? ? ? C .
A 1 37 THR 37 ? ? ? C .
A 1 38 GLY 38 ? ? ? C .
A 1 39 LEU 39 ? ? ? C .
A 1 40 ASP 40 ? ? ? C .
A 1 41 VAL 41 ? ? ? C .
A 1 42 ASN 42 ? ? ? C .
A 1 43 VAL 43 ? ? ? C .
A 1 44 ARG 44 ? ? ? C .
A 1 45 PHE 45 ? ? ? C .
A 1 46 THR 46 ? ? ? C .
A 1 47 GLY 47 ? ? ? C .
A 1 48 VAL 48 ? ? ? C .
A 1 49 SER 49 ? ? ? C .
A 1 50 ASP 50 ? ? ? C .
A 1 51 PHE 51 ? ? ? C .
A 1 52 GLU 52 ? ? ? C .
A 1 53 TYR 53 ? ? ? C .
A 1 54 THR 54 ? ? ? C .
A 1 55 PRO 55 ? ? ? C .
A 1 56 GLU 56 ? ? ? C .
A 1 57 CYS 57 ? ? ? C .
A 1 58 SER 58 ? ? ? C .
A 1 59 ILE 59 ? ? ? C .
A 1 60 PHE 60 ? ? ? C .
A 1 61 ASP 61 ? ? ? C .
A 1 62 LEU 62 ? ? ? C .
A 1 63 LEU 63 ? ? ? C .
A 1 64 GLY 64 ? ? ? C .
A 1 65 ILE 65 ? ? ? C .
A 1 66 PRO 66 ? ? ? C .
A 1 67 LEU 67 ? ? ? C .
A 1 68 TYR 68 ? ? ? C .
A 1 69 HIS 69 ? ? ? C .
A 1 70 GLY 70 ? ? ? C .
A 1 71 TRP 71 ? ? ? C .
A 1 72 LEU 72 ? ? ? C .
A 1 73 VAL 73 ? ? ? C .
A 1 74 ASP 74 ? ? ? C .
A 1 75 PRO 75 ? ? ? C .
A 1 76 GLN 76 ? ? ? C .
A 1 77 SER 77 ? ? ? C .
A 1 78 PRO 78 ? ? ? C .
A 1 79 GLU 79 ? ? ? C .
A 1 80 ALA 80 ? ? ? C .
A 1 81 VAL 81 ? ? ? C .
A 1 82 SER 82 ? ? ? C .
A 1 83 ALA 83 ? ? ? C .
A 1 84 VAL 84 ? ? ? C .
A 1 85 GLY 85 ? ? ? C .
A 1 86 LYS 86 ? ? ? C .
A 1 87 LEU 87 ? ? ? C .
A 1 88 SER 88 ? ? ? C .
A 1 89 TYR 89 ? ? ? C .
A 1 90 ASN 90 ? ? ? C .
A 1 91 GLN 91 ? ? ? C .
A 1 92 LEU 92 ? ? ? C .
A 1 93 VAL 93 ? ? ? C .
A 1 94 GLU 94 ? ? ? C .
A 1 95 LYS 95 ? ? ? C .
A 1 96 ILE 96 ? ? ? C .
A 1 97 ILE 97 ? ? ? C .
A 1 98 THR 98 ? ? ? C .
A 1 99 CYS 99 ? ? ? C .
A 1 100 LYS 100 ? ? ? C .
A 1 101 HIS 101 ? ? ? C .
A 1 102 SER 102 ? ? ? C .
A 1 103 SER 103 ? ? ? C .
A 1 104 ASP 104 ? ? ? C .
A 1 105 SER 105 ? ? ? C .
A 1 106 ASN 106 ? ? ? C .
A 1 107 LEU 107 ? ? ? C .
A 1 108 VAL 108 ? ? ? C .
A 1 109 THR 109 ? ? ? C .
A 1 110 GLU 110 ? ? ? C .
A 1 111 GLY 111 ? ? ? C .
A 1 112 LEU 112 ? ? ? C .
A 1 113 VAL 113 ? ? ? C .
A 1 114 ALA 114 ? ? ? C .
A 1 115 GLU 115 ? ? ? C .
A 1 116 GLN 116 ? ? ? C .
A 1 117 PHE 117 ? ? ? C .
A 1 118 LEU 118 ? ? ? C .
A 1 119 GLU 119 ? ? ? C .
A 1 120 THR 120 ? ? ? C .
A 1 121 THR 121 ? ? ? C .
A 1 122 ALA 122 ? ? ? C .
A 1 123 ALA 123 ? ? ? C .
A 1 124 GLN 124 ? ? ? C .
A 1 125 LEU 125 ? ? ? C .
A 1 126 THR 126 ? ? ? C .
A 1 127 TYR 127 ? ? ? C .
A 1 128 HIS 128 ? ? ? C .
A 1 129 GLY 129 ? ? ? C .
A 1 130 LEU 130 ? ? ? C .
A 1 131 CYS 131 ? ? ? C .
A 1 132 GLU 132 ? ? ? C .
A 1 133 LEU 133 ? ? ? C .
A 1 134 THR 134 ? ? ? C .
A 1 135 ALA 135 ? ? ? C .
A 1 136 ALA 136 ? ? ? C .
A 1 137 ALA 137 ? ? ? C .
A 1 138 THR 138 ? ? ? C .
A 1 139 GLU 139 ? ? ? C .
A 1 140 ASP 140 ? ? ? C .
A 1 141 GLU 141 ? ? ? C .
A 1 142 LEU 142 ? ? ? C .
A 1 143 SER 143 ? ? ? C .
A 1 144 VAL 144 ? ? ? C .
A 1 145 PHE 145 ? ? ? C .
A 1 146 PHE 146 ? ? ? C .
A 1 147 ARG 147 ? ? ? C .
A 1 148 ASN 148 ? ? ? C .
A 1 149 ASN 149 ? ? ? C .
A 1 150 HIS 150 ? ? ? C .
A 1 151 PHE 151 ? ? ? C .
A 1 152 SER 152 ? ? ? C .
A 1 153 THR 153 ? ? ? C .
A 1 154 MET 154 ? ? ? C .
A 1 155 THR 155 ? ? ? C .
A 1 156 LYS 156 ? ? ? C .
A 1 157 HIS 157 ? ? ? C .
A 1 158 LYS 158 ? ? ? C .
A 1 159 SER 159 ? ? ? C .
A 1 160 HIS 160 ? ? ? C .
A 1 161 LEU 161 ? ? ? C .
A 1 162 TYR 162 ? ? ? C .
A 1 163 LEU 163 ? ? ? C .
A 1 164 LEU 164 ? ? ? C .
A 1 165 VAL 165 ? ? ? C .
A 1 166 THR 166 ? ? ? C .
A 1 167 ASP 167 ? ? ? C .
A 1 168 GLN 168 ? ? ? C .
A 1 169 GLY 169 ? ? ? C .
A 1 170 PHE 170 ? ? ? C .
A 1 171 LEU 171 ? ? ? C .
A 1 172 GLN 172 ? ? ? C .
A 1 173 GLU 173 ? ? ? C .
A 1 174 GLU 174 ? ? ? C .
A 1 175 GLN 175 ? ? ? C .
A 1 176 VAL 176 ? ? ? C .
A 1 177 VAL 177 ? ? ? C .
A 1 178 TRP 178 ? ? ? C .
A 1 179 GLU 179 ? ? ? C .
A 1 180 SER 180 ? ? ? C .
A 1 181 LEU 181 ? ? ? C .
A 1 182 HIS 182 ? ? ? C .
A 1 183 ASN 183 ? ? ? C .
A 1 184 VAL 184 ? ? ? C .
A 1 185 ASP 185 ? ? ? C .
A 1 186 GLY 186 ? ? ? C .
A 1 187 ASP 187 ? ? ? C .
A 1 188 SER 188 ? ? ? C .
A 1 189 CYS 189 ? ? ? C .
A 1 190 PHE 190 ? ? ? C .
A 1 191 CYS 191 ? ? ? C .
A 1 192 ASP 192 ? ? ? C .
A 1 193 SER 193 ? ? ? C .
A 1 194 ASP 194 ? ? ? C .
A 1 195 PHE 195 ? ? ? C .
A 1 196 HIS 196 ? ? ? C .
A 1 197 LEU 197 ? ? ? C .
A 1 198 SER 198 ? ? ? C .
A 1 199 HIS 199 ? ? ? C .
A 1 200 SER 200 ? ? ? C .
A 1 201 LEU 201 ? ? ? C .
A 1 202 GLY 202 ? ? ? C .
A 1 203 LYS 203 ? ? ? C .
A 1 204 SER 204 ? ? ? C .
A 1 205 HIS 205 ? ? ? C .
A 1 206 GLY 206 ? ? ? C .
A 1 207 ALA 207 ? ? ? C .
A 1 208 GLU 208 ? ? ? C .
A 1 209 GLY 209 ? ? ? C .
A 1 210 GLY 210 ? ? ? C .
A 1 211 GLY 211 ? ? ? C .
A 1 212 GLY 212 ? ? ? C .
A 1 213 SER 213 ? ? ? C .
A 1 214 PRO 214 ? ? ? C .
A 1 215 GLU 215 ? ? ? C .
A 1 216 LYS 216 ? ? ? C .
A 1 217 GLN 217 ? ? ? C .
A 1 218 LEU 218 ? ? ? C .
A 1 219 GLN 219 ? ? ? C .
A 1 220 VAL 220 ? ? ? C .
A 1 221 ASP 221 ? ? ? C .
A 1 222 GLN 222 ? ? ? C .
A 1 223 ASP 223 ? ? ? C .
A 1 224 TYR 224 ? ? ? C .
A 1 225 LEU 225 ? ? ? C .
A 1 226 ILE 226 ? ? ? C .
A 1 227 ALA 227 ? ? ? C .
A 1 228 LEU 228 ? ? ? C .
A 1 229 SER 229 ? ? ? C .
A 1 230 LEU 230 ? ? ? C .
A 1 231 GLN 231 ? ? ? C .
A 1 232 GLN 232 ? ? ? C .
A 1 233 GLN 233 ? ? ? C .
A 1 234 GLN 234 ? ? ? C .
A 1 235 GLN 235 ? ? ? C .
A 1 236 PRO 236 ? ? ? C .
A 1 237 GLN 237 ? ? ? C .
A 1 238 GLY 238 ? ? ? C .
A 1 239 THR 239 ? ? ? C .
A 1 240 LEU 240 240 LEU LEU C .
A 1 241 GLY 241 241 GLY GLY C .
A 1 242 LEU 242 242 LEU LEU C .
A 1 243 SER 243 243 SER SER C .
A 1 244 ASP 244 244 ASP ASP C .
A 1 245 LEU 245 245 LEU LEU C .
A 1 246 GLU 246 246 GLU GLU C .
A 1 247 LEU 247 247 LEU LEU C .
A 1 248 ALA 248 248 ALA ALA C .
A 1 249 GLN 249 249 GLN GLN C .
A 1 250 GLN 250 250 GLN GLN C .
A 1 251 LEU 251 251 LEU LEU C .
A 1 252 GLN 252 252 GLN GLN C .
A 1 253 GLN 253 253 GLN GLN C .
A 1 254 GLU 254 254 GLU GLU C .
A 1 255 GLU 255 255 GLU GLU C .
A 1 256 TYR 256 256 TYR TYR C .
A 1 257 GLN 257 257 GLN GLN C .
A 1 258 GLN 258 258 GLN GLN C .
A 1 259 GLN 259 ? ? ? C .
A 1 260 GLN 260 ? ? ? C .
A 1 261 ALA 261 ? ? ? C .
A 1 262 VAL 262 ? ? ? C .
A 1 263 GLN 263 ? ? ? C .
A 1 264 PRO 264 ? ? ? C .
A 1 265 VAL 265 ? ? ? C .
A 1 266 ARG 266 ? ? ? C .
A 1 267 THR 267 ? ? ? C .
A 1 268 ARG 268 ? ? ? C .
A 1 269 ALA 269 ? ? ? C .
A 1 270 PRO 270 ? ? ? C .
A 1 271 SER 271 ? ? ? C .
A 1 272 PRO 272 ? ? ? C .
A 1 273 GLN 273 ? ? ? C .
A 1 274 GLY 274 ? ? ? C .
A 1 275 ARG 275 ? ? ? C .
A 1 276 GLY 276 ? ? ? C .
A 1 277 ALA 277 ? ? ? C .
A 1 278 THR 278 ? ? ? C .
A 1 279 SER 279 ? ? ? C .
A 1 280 GLY 280 ? ? ? C .
A 1 281 ARG 281 ? ? ? C .
A 1 282 PRO 282 ? ? ? C .
A 1 283 ALA 283 ? ? ? C .
A 1 284 GLY 284 ? ? ? C .
A 1 285 GLU 285 ? ? ? C .
A 1 286 ARG 286 ? ? ? C .
A 1 287 ARG 287 ? ? ? C .
A 1 288 GLN 288 ? ? ? C .
A 1 289 ARG 289 ? ? ? C .
A 1 290 SER 290 ? ? ? C .
A 1 291 LYS 291 ? ? ? C .
A 1 292 THR 292 ? ? ? C .
A 1 293 GLU 293 ? ? ? C .
A 1 294 SER 294 ? ? ? C .
A 1 295 ASP 295 ? ? ? C .
A 1 296 CYS 296 ? ? ? C .
A 1 297 VAL 297 ? ? ? C .
A 1 298 LEU 298 ? ? ? C .
A 1 299 LEU 299 ? ? ? C .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Ubiquitin carboxyl-terminal hydrolase MINDY-1 {PDB ID=5mn9, label_asym_id=C, auth_asym_id=C, SMTL ID=5mn9.1.C}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 5mn9, label_asym_id=C'
'target-template alignment' .
4 'model 2' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2025-01-08
6 PDB https://www.wwpdb.org . 2025-01-03
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A C 2 1 C
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 GPLGSQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQ
GPLGSQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQ
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 6 44
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 5mn9 2024-01-17
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 299
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 299 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 2.8e-07 89.744
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MKHGMVGGREGRLDQPSCLFSHQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLCELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQDYLIALSLQQQQQPQGTLGLSDLELAQQLQQEEYQQQQAVQPVRTRAPSPQGRGATSGRPAGERRQRSKTESDCVLL
2 1 2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QVDQDYLIALSLQQQQP-RGPLGLTDLELAQQLQQEEYQQ-----------------------------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 5mn9.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 2' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . LEU 240 240 ? A 27.884 88.352 10.639 1 1 C LEU 0.700 1
ATOM 2 C CA . LEU 240 240 ? A 29.117 89.189 10.785 1 1 C LEU 0.700 1
ATOM 3 C C . LEU 240 240 ? A 29.041 90.275 11.869 1 1 C LEU 0.700 1
ATOM 4 O O . LEU 240 240 ? A 29.378 91.415 11.605 1 1 C LEU 0.700 1
ATOM 5 C CB . LEU 240 240 ? A 29.391 89.820 9.389 1 1 C LEU 0.700 1
ATOM 6 C CG . LEU 240 240 ? A 29.797 88.835 8.266 1 1 C LEU 0.700 1
ATOM 7 C CD1 . LEU 240 240 ? A 29.877 89.561 6.915 1 1 C LEU 0.700 1
ATOM 8 C CD2 . LEU 240 240 ? A 31.148 88.158 8.535 1 1 C LEU 0.700 1
ATOM 9 N N . GLY 241 241 ? A 28.621 89.984 13.137 1 1 C GLY 0.710 1
ATOM 10 C CA . GLY 241 241 ? A 28.481 91.049 14.150 1 1 C GLY 0.710 1
ATOM 11 C C . GLY 241 241 ? A 27.624 92.233 13.736 1 1 C GLY 0.710 1
ATOM 12 O O . GLY 241 241 ? A 26.479 92.060 13.331 1 1 C GLY 0.710 1
ATOM 13 N N . LEU 242 242 ? A 28.173 93.461 13.817 1 1 C LEU 0.660 1
ATOM 14 C CA . LEU 242 242 ? A 27.450 94.689 13.540 1 1 C LEU 0.660 1
ATOM 15 C C . LEU 242 242 ? A 27.569 95.132 12.084 1 1 C LEU 0.660 1
ATOM 16 O O . LEU 242 242 ? A 26.963 96.127 11.686 1 1 C LEU 0.660 1
ATOM 17 C CB . LEU 242 242 ? A 27.978 95.818 14.459 1 1 C LEU 0.660 1
ATOM 18 C CG . LEU 242 242 ? A 27.532 95.732 15.931 1 1 C LEU 0.660 1
ATOM 19 C CD1 . LEU 242 242 ? A 28.331 96.753 16.754 1 1 C LEU 0.660 1
ATOM 20 C CD2 . LEU 242 242 ? A 26.027 96.012 16.060 1 1 C LEU 0.660 1
ATOM 21 N N . SER 243 243 ? A 28.283 94.363 11.224 1 1 C SER 0.730 1
ATOM 22 C CA . SER 243 243 ? A 28.578 94.741 9.842 1 1 C SER 0.730 1
ATOM 23 C C . SER 243 243 ? A 27.374 95.123 9.015 1 1 C SER 0.730 1
ATOM 24 O O . SER 243 243 ? A 27.405 96.133 8.323 1 1 C SER 0.730 1
ATOM 25 C CB . SER 243 243 ? A 29.268 93.616 9.030 1 1 C SER 0.730 1
ATOM 26 O OG . SER 243 243 ? A 30.579 93.350 9.528 1 1 C SER 0.730 1
ATOM 27 N N . ASP 244 244 ? A 26.278 94.348 9.091 1 1 C ASP 0.770 1
ATOM 28 C CA . ASP 244 244 ? A 25.037 94.609 8.394 1 1 C ASP 0.770 1
ATOM 29 C C . ASP 244 244 ? A 24.381 95.915 8.844 1 1 C ASP 0.770 1
ATOM 30 O O . ASP 244 244 ? A 23.956 96.725 8.024 1 1 C ASP 0.770 1
ATOM 31 C CB . ASP 244 244 ? A 24.104 93.376 8.550 1 1 C ASP 0.770 1
ATOM 32 C CG . ASP 244 244 ? A 24.729 92.125 7.924 1 1 C ASP 0.770 1
ATOM 33 O OD1 . ASP 244 244 ? A 25.745 92.243 7.192 1 1 C ASP 0.770 1
ATOM 34 O OD2 . ASP 244 244 ? A 24.231 91.015 8.237 1 1 C ASP 0.770 1
ATOM 35 N N . LEU 245 245 ? A 24.337 96.186 10.169 1 1 C LEU 0.780 1
ATOM 36 C CA . LEU 245 245 ? A 23.779 97.412 10.713 1 1 C LEU 0.780 1
ATOM 37 C C . LEU 245 245 ? A 24.561 98.661 10.312 1 1 C LEU 0.780 1
ATOM 38 O O . LEU 245 245 ? A 23.992 99.607 9.768 1 1 C LEU 0.780 1
ATOM 39 C CB . LEU 245 245 ? A 23.689 97.307 12.256 1 1 C LEU 0.780 1
ATOM 40 C CG . LEU 245 245 ? A 23.172 98.562 12.996 1 1 C LEU 0.780 1
ATOM 41 C CD1 . LEU 245 245 ? A 21.844 99.107 12.444 1 1 C LEU 0.780 1
ATOM 42 C CD2 . LEU 245 245 ? A 23.047 98.279 14.500 1 1 C LEU 0.780 1
ATOM 43 N N . GLU 246 246 ? A 25.894 98.663 10.512 1 1 C GLU 0.780 1
ATOM 44 C CA . GLU 246 246 ? A 26.769 99.781 10.189 1 1 C GLU 0.780 1
ATOM 45 C C . GLU 246 246 ? A 26.842 100.045 8.691 1 1 C GLU 0.780 1
ATOM 46 O O . GLU 246 246 ? A 26.757 101.187 8.234 1 1 C GLU 0.780 1
ATOM 47 C CB . GLU 246 246 ? A 28.160 99.588 10.837 1 1 C GLU 0.780 1
ATOM 48 C CG . GLU 246 246 ? A 28.070 99.536 12.383 1 1 C GLU 0.780 1
ATOM 49 C CD . GLU 246 246 ? A 29.443 99.460 13.043 1 1 C GLU 0.780 1
ATOM 50 O OE1 . GLU 246 246 ? A 30.168 100.487 13.009 1 1 C GLU 0.780 1
ATOM 51 O OE2 . GLU 246 246 ? A 29.768 98.379 13.601 1 1 C GLU 0.780 1
ATOM 52 N N . LEU 247 247 ? A 26.917 98.970 7.872 1 1 C LEU 0.810 1
ATOM 53 C CA . LEU 247 247 ? A 26.797 99.058 6.425 1 1 C LEU 0.810 1
ATOM 54 C C . LEU 247 247 ? A 25.452 99.645 5.980 1 1 C LEU 0.810 1
ATOM 55 O O . LEU 247 247 ? A 25.418 100.615 5.229 1 1 C LEU 0.810 1
ATOM 56 C CB . LEU 247 247 ? A 27.032 97.661 5.791 1 1 C LEU 0.810 1
ATOM 57 C CG . LEU 247 247 ? A 27.150 97.582 4.257 1 1 C LEU 0.810 1
ATOM 58 C CD1 . LEU 247 247 ? A 28.196 98.562 3.707 1 1 C LEU 0.810 1
ATOM 59 C CD2 . LEU 247 247 ? A 27.490 96.141 3.829 1 1 C LEU 0.810 1
ATOM 60 N N . ALA 248 248 ? A 24.306 99.150 6.508 1 1 C ALA 0.720 1
ATOM 61 C CA . ALA 248 248 ? A 22.972 99.661 6.216 1 1 C ALA 0.720 1
ATOM 62 C C . ALA 248 248 ? A 22.771 101.137 6.564 1 1 C ALA 0.720 1
ATOM 63 O O . ALA 248 248 ? A 22.192 101.893 5.782 1 1 C ALA 0.720 1
ATOM 64 C CB . ALA 248 248 ? A 21.906 98.817 6.952 1 1 C ALA 0.720 1
ATOM 65 N N . GLN 249 249 ? A 23.271 101.596 7.728 1 1 C GLN 0.670 1
ATOM 66 C CA . GLN 249 249 ? A 23.272 102.994 8.138 1 1 C GLN 0.670 1
ATOM 67 C C . GLN 249 249 ? A 24.068 103.915 7.224 1 1 C GLN 0.670 1
ATOM 68 O O . GLN 249 249 ? A 23.599 104.989 6.848 1 1 C GLN 0.670 1
ATOM 69 C CB . GLN 249 249 ? A 23.821 103.123 9.574 1 1 C GLN 0.670 1
ATOM 70 C CG . GLN 249 249 ? A 22.852 102.544 10.626 1 1 C GLN 0.670 1
ATOM 71 C CD . GLN 249 249 ? A 23.465 102.573 12.026 1 1 C GLN 0.670 1
ATOM 72 O OE1 . GLN 249 249 ? A 24.675 102.542 12.221 1 1 C GLN 0.670 1
ATOM 73 N NE2 . GLN 249 249 ? A 22.587 102.629 13.057 1 1 C GLN 0.670 1
ATOM 74 N N . GLN 250 250 ? A 25.285 103.488 6.820 1 1 C GLN 0.650 1
ATOM 75 C CA . GLN 250 250 ? A 26.086 104.181 5.827 1 1 C GLN 0.650 1
ATOM 76 C C . GLN 250 250 ? A 25.402 104.231 4.467 1 1 C GLN 0.650 1
ATOM 77 O O . GLN 250 250 ? A 25.260 105.301 3.889 1 1 C GLN 0.650 1
ATOM 78 C CB . GLN 250 250 ? A 27.482 103.533 5.680 1 1 C GLN 0.650 1
ATOM 79 C CG . GLN 250 250 ? A 28.465 104.349 4.806 1 1 C GLN 0.650 1
ATOM 80 C CD . GLN 250 250 ? A 29.671 103.506 4.389 1 1 C GLN 0.650 1
ATOM 81 O OE1 . GLN 250 250 ? A 30.547 103.192 5.196 1 1 C GLN 0.650 1
ATOM 82 N NE2 . GLN 250 250 ? A 29.734 103.121 3.095 1 1 C GLN 0.650 1
ATOM 83 N N . LEU 251 251 ? A 24.869 103.093 3.962 1 1 C LEU 0.720 1
ATOM 84 C CA . LEU 251 251 ? A 24.138 103.072 2.703 1 1 C LEU 0.720 1
ATOM 85 C C . LEU 251 251 ? A 22.900 103.955 2.719 1 1 C LEU 0.720 1
ATOM 86 O O . LEU 251 251 ? A 22.656 104.732 1.799 1 1 C LEU 0.720 1
ATOM 87 C CB . LEU 251 251 ? A 23.758 101.638 2.276 1 1 C LEU 0.720 1
ATOM 88 C CG . LEU 251 251 ? A 24.970 100.724 2.000 1 1 C LEU 0.720 1
ATOM 89 C CD1 . LEU 251 251 ? A 24.479 99.299 1.713 1 1 C LEU 0.720 1
ATOM 90 C CD2 . LEU 251 251 ? A 25.910 101.250 0.899 1 1 C LEU 0.720 1
ATOM 91 N N . GLN 252 252 ? A 22.109 103.928 3.812 1 1 C GLN 0.650 1
ATOM 92 C CA . GLN 252 252 ? A 20.959 104.800 3.962 1 1 C GLN 0.650 1
ATOM 93 C C . GLN 252 252 ? A 21.290 106.285 3.919 1 1 C GLN 0.650 1
ATOM 94 O O . GLN 252 252 ? A 20.557 107.096 3.354 1 1 C GLN 0.650 1
ATOM 95 C CB . GLN 252 252 ? A 20.190 104.506 5.272 1 1 C GLN 0.650 1
ATOM 96 C CG . GLN 252 252 ? A 18.815 105.207 5.380 1 1 C GLN 0.650 1
ATOM 97 C CD . GLN 252 252 ? A 17.898 104.752 4.247 1 1 C GLN 0.650 1
ATOM 98 O OE1 . GLN 252 252 ? A 17.294 103.684 4.323 1 1 C GLN 0.650 1
ATOM 99 N NE2 . GLN 252 252 ? A 17.800 105.559 3.169 1 1 C GLN 0.650 1
ATOM 100 N N . GLN 253 253 ? A 22.429 106.659 4.521 1 1 C GLN 0.660 1
ATOM 101 C CA . GLN 253 253 ? A 23.023 107.971 4.433 1 1 C GLN 0.660 1
ATOM 102 C C . GLN 253 253 ? A 23.469 108.367 3.020 1 1 C GLN 0.660 1
ATOM 103 O O . GLN 253 253 ? A 23.198 109.488 2.595 1 1 C GLN 0.660 1
ATOM 104 C CB . GLN 253 253 ? A 24.180 108.010 5.446 1 1 C GLN 0.660 1
ATOM 105 C CG . GLN 253 253 ? A 25.001 109.309 5.462 1 1 C GLN 0.660 1
ATOM 106 C CD . GLN 253 253 ? A 25.980 109.309 6.632 1 1 C GLN 0.660 1
ATOM 107 O OE1 . GLN 253 253 ? A 27.195 109.291 6.472 1 1 C GLN 0.660 1
ATOM 108 N NE2 . GLN 253 253 ? A 25.420 109.336 7.866 1 1 C GLN 0.660 1
ATOM 109 N N . GLU 254 254 ? A 24.109 107.458 2.247 1 1 C GLU 0.670 1
ATOM 110 C CA . GLU 254 254 ? A 24.441 107.644 0.831 1 1 C GLU 0.670 1
ATOM 111 C C . GLU 254 254 ? A 23.212 107.925 -0.053 1 1 C GLU 0.670 1
ATOM 112 O O . GLU 254 254 ? A 23.211 108.866 -0.845 1 1 C GLU 0.670 1
ATOM 113 C CB . GLU 254 254 ? A 25.219 106.415 0.268 1 1 C GLU 0.670 1
ATOM 114 C CG . GLU 254 254 ? A 26.623 106.160 0.892 1 1 C GLU 0.670 1
ATOM 115 C CD . GLU 254 254 ? A 27.311 104.865 0.433 1 1 C GLU 0.670 1
ATOM 116 O OE1 . GLU 254 254 ? A 27.097 104.438 -0.728 1 1 C GLU 0.670 1
ATOM 117 O OE2 . GLU 254 254 ? A 28.088 104.300 1.252 1 1 C GLU 0.670 1
ATOM 118 N N . GLU 255 255 ? A 22.107 107.164 0.133 1 1 C GLU 0.670 1
ATOM 119 C CA . GLU 255 255 ? A 20.787 107.412 -0.448 1 1 C GLU 0.670 1
ATOM 120 C C . GLU 255 255 ? A 20.201 108.784 -0.094 1 1 C GLU 0.670 1
ATOM 121 O O . GLU 255 255 ? A 19.603 109.460 -0.918 1 1 C GLU 0.670 1
ATOM 122 C CB . GLU 255 255 ? A 19.780 106.311 -0.010 1 1 C GLU 0.670 1
ATOM 123 C CG . GLU 255 255 ? A 20.107 104.872 -0.496 1 1 C GLU 0.670 1
ATOM 124 C CD . GLU 255 255 ? A 19.954 104.697 -2.008 1 1 C GLU 0.670 1
ATOM 125 O OE1 . GLU 255 255 ? A 19.377 105.597 -2.671 1 1 C GLU 0.670 1
ATOM 126 O OE2 . GLU 255 255 ? A 20.393 103.630 -2.505 1 1 C GLU 0.670 1
ATOM 127 N N . TYR 256 256 ? A 20.391 109.260 1.155 1 1 C TYR 0.640 1
ATOM 128 C CA . TYR 256 256 ? A 19.884 110.553 1.605 1 1 C TYR 0.640 1
ATOM 129 C C . TYR 256 256 ? A 20.802 111.742 1.304 1 1 C TYR 0.640 1
ATOM 130 O O . TYR 256 256 ? A 20.456 112.891 1.574 1 1 C TYR 0.640 1
ATOM 131 C CB . TYR 256 256 ? A 19.622 110.515 3.134 1 1 C TYR 0.640 1
ATOM 132 C CG . TYR 256 256 ? A 18.449 109.665 3.565 1 1 C TYR 0.640 1
ATOM 133 C CD1 . TYR 256 256 ? A 17.507 109.094 2.687 1 1 C TYR 0.640 1
ATOM 134 C CD2 . TYR 256 256 ? A 18.262 109.488 4.943 1 1 C TYR 0.640 1
ATOM 135 C CE1 . TYR 256 256 ? A 16.396 108.396 3.182 1 1 C TYR 0.640 1
ATOM 136 C CE2 . TYR 256 256 ? A 17.169 108.767 5.441 1 1 C TYR 0.640 1
ATOM 137 C CZ . TYR 256 256 ? A 16.231 108.226 4.557 1 1 C TYR 0.640 1
ATOM 138 O OH . TYR 256 256 ? A 15.129 107.494 5.032 1 1 C TYR 0.640 1
ATOM 139 N N . GLN 257 257 ? A 21.981 111.495 0.703 1 1 C GLN 0.730 1
ATOM 140 C CA . GLN 257 257 ? A 22.800 112.522 0.087 1 1 C GLN 0.730 1
ATOM 141 C C . GLN 257 257 ? A 22.570 112.655 -1.418 1 1 C GLN 0.730 1
ATOM 142 O O . GLN 257 257 ? A 23.112 113.573 -2.034 1 1 C GLN 0.730 1
ATOM 143 C CB . GLN 257 257 ? A 24.290 112.187 0.323 1 1 C GLN 0.730 1
ATOM 144 C CG . GLN 257 257 ? A 24.735 112.477 1.771 1 1 C GLN 0.730 1
ATOM 145 C CD . GLN 257 257 ? A 26.131 111.920 2.029 1 1 C GLN 0.730 1
ATOM 146 O OE1 . GLN 257 257 ? A 26.603 110.989 1.386 1 1 C GLN 0.730 1
ATOM 147 N NE2 . GLN 257 257 ? A 26.835 112.515 3.024 1 1 C GLN 0.730 1
ATOM 148 N N . GLN 258 258 ? A 21.753 111.768 -2.021 1 1 C GLN 0.700 1
ATOM 149 C CA . GLN 258 258 ? A 21.187 111.938 -3.350 1 1 C GLN 0.700 1
ATOM 150 C C . GLN 258 258 ? A 19.882 112.794 -3.345 1 1 C GLN 0.700 1
ATOM 151 O O . GLN 258 258 ? A 19.383 113.162 -2.248 1 1 C GLN 0.700 1
ATOM 152 C CB . GLN 258 258 ? A 20.808 110.559 -3.958 1 1 C GLN 0.700 1
ATOM 153 C CG . GLN 258 258 ? A 21.956 109.563 -4.239 1 1 C GLN 0.700 1
ATOM 154 C CD . GLN 258 258 ? A 22.892 110.065 -5.333 1 1 C GLN 0.700 1
ATOM 155 O OE1 . GLN 258 258 ? A 22.523 110.234 -6.494 1 1 C GLN 0.700 1
ATOM 156 N NE2 . GLN 258 258 ? A 24.186 110.271 -4.981 1 1 C GLN 0.700 1
ATOM 157 O OXT . GLN 258 258 ? A 19.368 113.074 -4.466 1 1 C GLN 0.700 1
#
#
loop_
_atom_type.symbol
C
N
O
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.706
2 1 3 0.047
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 240 LEU 1 0.700
2 1 A 241 GLY 1 0.710
3 1 A 242 LEU 1 0.660
4 1 A 243 SER 1 0.730
5 1 A 244 ASP 1 0.770
6 1 A 245 LEU 1 0.780
7 1 A 246 GLU 1 0.780
8 1 A 247 LEU 1 0.810
9 1 A 248 ALA 1 0.720
10 1 A 249 GLN 1 0.670
11 1 A 250 GLN 1 0.650
12 1 A 251 LEU 1 0.720
13 1 A 252 GLN 1 0.650
14 1 A 253 GLN 1 0.660
15 1 A 254 GLU 1 0.670
16 1 A 255 GLU 1 0.670
17 1 A 256 TYR 1 0.640
18 1 A 257 GLN 1 0.730
19 1 A 258 GLN 1 0.700
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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