data_SMR-8639a9b9214f07e247e4d8686f9a082d_2 _entry.id SMR-8639a9b9214f07e247e4d8686f9a082d_2 _struct.entry_id SMR-8639a9b9214f07e247e4d8686f9a082d_2 _struct.pdbx_model_details ;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries: - B1AB92/ B1AB92_HORSE, Tumor necrosis factor - P29553/ TNFA_HORSE, Tumor necrosis factor Estimated model accuracy of this model is 0.018, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE). ; _struct.pdbx_structure_determination_methodology computational _struct.title 'Model for UniProtKB entries B1AB92, P29553' _audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic _audit_conform.dict_name mmcif_ma.dic _audit_conform.dict_version 1.4.6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SWISS-MODEL Repository - new features and functionality' 'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132 2 'SWISS-MODEL: homology modelling of protein structures and complexes' 'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427 3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1) 1 18 2021 33507980 10.1371/journal.pcbi.1008667 4 'QMEANDisCo - distance constraints applied on model quality estimation' Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828 5 'OpenStructure: an integrated software framework for computational structural biology' 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579 10.1107/S0907444913007051 6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500 10.1186/1471-2105-10-421 7 'HH-suite3 for fast remote homology detection and deep protein annotation' 'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7 # # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bienert, S.' 1 primary 'Waterhouse, A.' 2 primary 'de Beer, T.A.P.' 3 primary 'Tauriello, G.' 4 primary 'Studer, G.' 5 primary 'Bordoli, L.' 6 primary 'Schwede, T.' 7 2 'Waterhouse, A.' 8 2 'Bertoni, M.' 9 2 'Bienert, S.' 10 2 'Studer, G.' 11 2 'Tauriello, G.' 12 2 'Gumienny, R.' 13 2 'Heer, F.T.' 14 2 'de Beer, T.A.P.' 15 2 'Rempfer, C.' 16 2 'Bordoli, L.' 17 2 'Lepore, R.' 18 2 'Schwede, T.' 19 3 'Studer, G.' 20 3 'Tauriello, G.' 21 3 'Bienert, S.' 22 3 'Biasini, M.' 23 3 'Johner, N.' 24 3 'Schwede, T.' 25 4 'Studer, G.' 26 4 'Rempfer, C.' 27 4 'Waterhouse, A.M.' 28 4 'Gumienny, R.' 29 4 'Haas, J.' 30 4 'Schwede, T.' 31 5 'Biasini, M.' 32 5 'Schmidt, T.' 33 5 'Bienert, S.' 34 5 'Mariani, V.' 35 5 'Studer, G.' 36 5 'Haas, J.' 37 5 'Johner, N.' 38 5 'Schenk, A.D.' 39 5 'Philippsen, A.' 40 5 'Schwede, T.' 41 6 'Camacho, C.' 42 6 'Coulouris, G.' 43 6 'Avagyan, V.' 44 6 'Ma, N.' 45 6 'Papadopoulos, J.' 46 6 'Bealer, K.' 47 6 'Madden, T.L.' 48 7 'Steinegger, M.' 49 7 'Meier, M.' 50 7 'Mirdita, M.' 51 7 'Vohringer, H.' 52 7 'Haunsberger, S.J.' 53 7 'Soding, J.' 54 # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location _software.citation_id 1 SWISS-MODEL 'model building' 'Homology modelling web service' 3ef406dae3f6eb8b74980f2a6e69a2109acde4aa package https://swissmodel.expasy.org 2 2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library https://git.scicore.unibas.ch/schwede/ProMod3 3 3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1 library https://git.scicore.unibas.ch/schwede/QMEAN 4 4 OpenStructure 'data processing' 'Open-Source Computational Structural Biology Framework' 2.8.0 package https://openstructure.org/ 5 5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6 6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0 package https://github.com/soedinglab/hh-suite 7 # # loop_ _ma_software_group.ordinal_id _ma_software_group.group_id _ma_software_group.software_id _ma_software_group.parameter_group_id 1 1 6 . 2 2 1 . 3 2 4 . 4 2 5 . 5 2 6 . 6 3 1 . 7 3 4 . 8 4 1 . 9 4 2 . 10 4 4 . 11 5 3 . 12 6 1 . 13 6 3 . 14 6 4 . # # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bienert, S.' 1 'Waterhouse, A.' 2 'de Beer, T.A.P.' 3 'Tauriello, G.' 4 'Studer, G.' 5 'Bordoli, L.' 6 'Schwede, T.' 7 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight _chem_comp.ma_provenance ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core' ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core' ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core' ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core' CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core' GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core' GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core' GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core' HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core' ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core' MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core' PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core' PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core' SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core' THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core' TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core' TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core' VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core' # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man . 29688.884 1 . # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP TNFA_HORSE P29553 1 ;MSTESMIRDVELAEEELAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFGVIGPQREEQLPNAFQS INPLAQTLRSSSRTPSDKPVAHVVANPQAEGQLQWLSGRANALLANGVKLTDNQLVVPLDGLYLIYSQVL FKGQGCPSTHVLLTHTISRLAVSYPSKVNLLSAIKSPCHTESPEQAEAKPWYEPIYLGGVFQLEKGDQLS AEINQPNYLDFAESGQVYFGIIAL ; 'Tumor necrosis factor' 2 1 UNP B1AB92_HORSE B1AB92 1 ;MSTESMIRDVELAEEELAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFGVIGPQREEQLPNAFQS INPLAQTLRSSSRTPSDKPVAHVVANPQAEGQLQWLSGRANALLANGVKLTDNQLVVPLDGLYLIYSQVL FKGQGCPSTHVLLTHTISRLAVSYPSKVNLLSAIKSPCHTESPEQAEAKPWYEPIYLGGVFQLEKGDQLS AEINQPNYLDFAESGQVYFGIIAL ; 'Tumor necrosis factor' # # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 234 1 234 2 2 1 234 1 234 # # loop_ _ma_target_ref_db_details.target_entity_id _ma_target_ref_db_details.db_name _ma_target_ref_db_details.db_name_other_details _ma_target_ref_db_details.db_code _ma_target_ref_db_details.db_accession _ma_target_ref_db_details.seq_db_isoform _ma_target_ref_db_details.seq_db_align_begin _ma_target_ref_db_details.seq_db_align_end _ma_target_ref_db_details.ncbi_taxonomy_id _ma_target_ref_db_details.organism_scientific _ma_target_ref_db_details.seq_db_sequence_version_date _ma_target_ref_db_details.seq_db_sequence_checksum 1 UNP . TNFA_HORSE P29553 . 1 234 9796 'Equus caballus (Horse)' 1993-04-01 E79ACE91143DF373 1 UNP . B1AB92_HORSE B1AB92 . 1 234 9796 'Equus caballus (Horse)' 2008-04-08 E79ACE91143DF373 # # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polypeptide(L) no no A ;MSTESMIRDVELAEEELAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFGVIGPQREEQLPNAFQS INPLAQTLRSSSRTPSDKPVAHVVANPQAEGQLQWLSGRANALLANGVKLTDNQLVVPLDGLYLIYSQVL FKGQGCPSTHVLLTHTISRLAVSYPSKVNLLSAIKSPCHTESPEQAEAKPWYEPIYLGGVFQLEKGDQLS AEINQPNYLDFAESGQVYFGIIAL ; ;MSTESMIRDVELAEEELAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFGVIGPQREEQLPNAFQS INPLAQTLRSSSRTPSDKPVAHVVANPQAEGQLQWLSGRANALLANGVKLTDNQLVVPLDGLYLIYSQVL FKGQGCPSTHVLLTHTISRLAVSYPSKVNLLSAIKSPCHTESPEQAEAKPWYEPIYLGGVFQLEKGDQLS AEINQPNYLDFAESGQVYFGIIAL ; # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET . 1 2 SER . 1 3 THR . 1 4 GLU . 1 5 SER . 1 6 MET . 1 7 ILE . 1 8 ARG . 1 9 ASP . 1 10 VAL . 1 11 GLU . 1 12 LEU . 1 13 ALA . 1 14 GLU . 1 15 GLU . 1 16 GLU . 1 17 LEU . 1 18 ALA . 1 19 LYS . 1 20 LYS . 1 21 ALA . 1 22 GLY . 1 23 GLY . 1 24 PRO . 1 25 GLN . 1 26 GLY . 1 27 SER . 1 28 ARG . 1 29 ARG . 1 30 CYS . 1 31 LEU . 1 32 CYS . 1 33 LEU . 1 34 SER . 1 35 LEU . 1 36 PHE . 1 37 SER . 1 38 PHE . 1 39 LEU . 1 40 LEU . 1 41 VAL . 1 42 ALA . 1 43 GLY . 1 44 ALA . 1 45 THR . 1 46 THR . 1 47 LEU . 1 48 PHE . 1 49 CYS . 1 50 LEU . 1 51 LEU . 1 52 HIS . 1 53 PHE . 1 54 GLY . 1 55 VAL . 1 56 ILE . 1 57 GLY . 1 58 PRO . 1 59 GLN . 1 60 ARG . 1 61 GLU . 1 62 GLU . 1 63 GLN . 1 64 LEU . 1 65 PRO . 1 66 ASN . 1 67 ALA . 1 68 PHE . 1 69 GLN . 1 70 SER . 1 71 ILE . 1 72 ASN . 1 73 PRO . 1 74 LEU . 1 75 ALA . 1 76 GLN . 1 77 THR . 1 78 LEU . 1 79 ARG . 1 80 SER . 1 81 SER . 1 82 SER . 1 83 ARG . 1 84 THR . 1 85 PRO . 1 86 SER . 1 87 ASP . 1 88 LYS . 1 89 PRO . 1 90 VAL . 1 91 ALA . 1 92 HIS . 1 93 VAL . 1 94 VAL . 1 95 ALA . 1 96 ASN . 1 97 PRO . 1 98 GLN . 1 99 ALA . 1 100 GLU . 1 101 GLY . 1 102 GLN . 1 103 LEU . 1 104 GLN . 1 105 TRP . 1 106 LEU . 1 107 SER . 1 108 GLY . 1 109 ARG . 1 110 ALA . 1 111 ASN . 1 112 ALA . 1 113 LEU . 1 114 LEU . 1 115 ALA . 1 116 ASN . 1 117 GLY . 1 118 VAL . 1 119 LYS . 1 120 LEU . 1 121 THR . 1 122 ASP . 1 123 ASN . 1 124 GLN . 1 125 LEU . 1 126 VAL . 1 127 VAL . 1 128 PRO . 1 129 LEU . 1 130 ASP . 1 131 GLY . 1 132 LEU . 1 133 TYR . 1 134 LEU . 1 135 ILE . 1 136 TYR . 1 137 SER . 1 138 GLN . 1 139 VAL . 1 140 LEU . 1 141 PHE . 1 142 LYS . 1 143 GLY . 1 144 GLN . 1 145 GLY . 1 146 CYS . 1 147 PRO . 1 148 SER . 1 149 THR . 1 150 HIS . 1 151 VAL . 1 152 LEU . 1 153 LEU . 1 154 THR . 1 155 HIS . 1 156 THR . 1 157 ILE . 1 158 SER . 1 159 ARG . 1 160 LEU . 1 161 ALA . 1 162 VAL . 1 163 SER . 1 164 TYR . 1 165 PRO . 1 166 SER . 1 167 LYS . 1 168 VAL . 1 169 ASN . 1 170 LEU . 1 171 LEU . 1 172 SER . 1 173 ALA . 1 174 ILE . 1 175 LYS . 1 176 SER . 1 177 PRO . 1 178 CYS . 1 179 HIS . 1 180 THR . 1 181 GLU . 1 182 SER . 1 183 PRO . 1 184 GLU . 1 185 GLN . 1 186 ALA . 1 187 GLU . 1 188 ALA . 1 189 LYS . 1 190 PRO . 1 191 TRP . 1 192 TYR . 1 193 GLU . 1 194 PRO . 1 195 ILE . 1 196 TYR . 1 197 LEU . 1 198 GLY . 1 199 GLY . 1 200 VAL . 1 201 PHE . 1 202 GLN . 1 203 LEU . 1 204 GLU . 1 205 LYS . 1 206 GLY . 1 207 ASP . 1 208 GLN . 1 209 LEU . 1 210 SER . 1 211 ALA . 1 212 GLU . 1 213 ILE . 1 214 ASN . 1 215 GLN . 1 216 PRO . 1 217 ASN . 1 218 TYR . 1 219 LEU . 1 220 ASP . 1 221 PHE . 1 222 ALA . 1 223 GLU . 1 224 SER . 1 225 GLY . 1 226 GLN . 1 227 VAL . 1 228 TYR . 1 229 PHE . 1 230 GLY . 1 231 ILE . 1 232 ILE . 1 233 ALA . 1 234 LEU . # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 . # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 ? ? ? A . A 1 2 SER 2 ? ? ? A . A 1 3 THR 3 ? ? ? A . A 1 4 GLU 4 ? ? ? A . A 1 5 SER 5 ? ? ? A . A 1 6 MET 6 ? ? ? A . A 1 7 ILE 7 ? ? ? A . A 1 8 ARG 8 ? ? ? A . A 1 9 ASP 9 ? ? ? A . A 1 10 VAL 10 ? ? ? A . A 1 11 GLU 11 ? ? ? A . A 1 12 LEU 12 ? ? ? A . A 1 13 ALA 13 ? ? ? A . A 1 14 GLU 14 ? ? ? A . A 1 15 GLU 15 ? ? ? A . A 1 16 GLU 16 ? ? ? A . A 1 17 LEU 17 ? ? ? A . A 1 18 ALA 18 ? ? ? A . A 1 19 LYS 19 ? ? ? A . A 1 20 LYS 20 ? ? ? A . A 1 21 ALA 21 ? ? ? A . A 1 22 GLY 22 ? ? ? A . A 1 23 GLY 23 ? ? ? A . A 1 24 PRO 24 ? ? ? A . A 1 25 GLN 25 ? ? ? A . A 1 26 GLY 26 ? ? ? A . A 1 27 SER 27 ? ? ? A . A 1 28 ARG 28 28 ARG ARG A . A 1 29 ARG 29 29 ARG ARG A . A 1 30 CYS 30 30 CYS CYS A . A 1 31 LEU 31 31 LEU LEU A . A 1 32 CYS 32 32 CYS CYS A . A 1 33 LEU 33 33 LEU LEU A . A 1 34 SER 34 34 SER SER A . A 1 35 LEU 35 35 LEU LEU A . A 1 36 PHE 36 36 PHE PHE A . A 1 37 SER 37 37 SER SER A . A 1 38 PHE 38 38 PHE PHE A . A 1 39 LEU 39 39 LEU LEU A . A 1 40 LEU 40 40 LEU LEU A . A 1 41 VAL 41 41 VAL VAL A . A 1 42 ALA 42 42 ALA ALA A . A 1 43 GLY 43 43 GLY GLY A . A 1 44 ALA 44 44 ALA ALA A . A 1 45 THR 45 45 THR THR A . A 1 46 THR 46 46 THR THR A . A 1 47 LEU 47 47 LEU LEU A . A 1 48 PHE 48 48 PHE PHE A . A 1 49 CYS 49 49 CYS CYS A . A 1 50 LEU 50 50 LEU LEU A . A 1 51 LEU 51 51 LEU LEU A . A 1 52 HIS 52 52 HIS HIS A . A 1 53 PHE 53 53 PHE PHE A . A 1 54 GLY 54 54 GLY GLY A . A 1 55 VAL 55 55 VAL VAL A . A 1 56 ILE 56 56 ILE ILE A . A 1 57 GLY 57 57 GLY GLY A . A 1 58 PRO 58 58 PRO PRO A . A 1 59 GLN 59 59 GLN GLN A . A 1 60 ARG 60 ? ? ? A . A 1 61 GLU 61 ? ? ? A . A 1 62 GLU 62 ? ? ? A . A 1 63 GLN 63 ? ? ? A . A 1 64 LEU 64 ? ? ? A . A 1 65 PRO 65 ? ? ? A . A 1 66 ASN 66 ? ? ? A . A 1 67 ALA 67 ? ? ? A . A 1 68 PHE 68 ? ? ? A . A 1 69 GLN 69 ? ? ? A . A 1 70 SER 70 ? ? ? A . A 1 71 ILE 71 ? ? ? A . A 1 72 ASN 72 ? ? ? A . A 1 73 PRO 73 ? ? ? A . A 1 74 LEU 74 ? ? ? A . A 1 75 ALA 75 ? ? ? A . A 1 76 GLN 76 ? ? ? A . A 1 77 THR 77 ? ? ? A . A 1 78 LEU 78 ? ? ? A . A 1 79 ARG 79 ? ? ? A . A 1 80 SER 80 ? ? ? A . A 1 81 SER 81 ? ? ? A . A 1 82 SER 82 ? ? ? A . A 1 83 ARG 83 ? ? ? A . A 1 84 THR 84 ? ? ? A . A 1 85 PRO 85 ? ? ? A . A 1 86 SER 86 ? ? ? A . A 1 87 ASP 87 ? ? ? A . A 1 88 LYS 88 ? ? ? A . A 1 89 PRO 89 ? ? ? A . A 1 90 VAL 90 ? ? ? A . A 1 91 ALA 91 ? ? ? A . A 1 92 HIS 92 ? ? ? A . A 1 93 VAL 93 ? ? ? A . A 1 94 VAL 94 ? ? ? A . A 1 95 ALA 95 ? ? ? A . A 1 96 ASN 96 ? ? ? A . A 1 97 PRO 97 ? ? ? A . A 1 98 GLN 98 ? ? ? A . A 1 99 ALA 99 ? ? ? A . A 1 100 GLU 100 ? ? ? A . A 1 101 GLY 101 ? ? ? A . A 1 102 GLN 102 ? ? ? A . A 1 103 LEU 103 ? ? ? A . A 1 104 GLN 104 ? ? ? A . A 1 105 TRP 105 ? ? ? A . A 1 106 LEU 106 ? ? ? A . A 1 107 SER 107 ? ? ? A . A 1 108 GLY 108 ? ? ? A . A 1 109 ARG 109 ? ? ? A . A 1 110 ALA 110 ? ? ? A . A 1 111 ASN 111 ? ? ? A . A 1 112 ALA 112 ? ? ? A . A 1 113 LEU 113 ? ? ? A . A 1 114 LEU 114 ? ? ? A . A 1 115 ALA 115 ? ? ? A . A 1 116 ASN 116 ? ? ? A . A 1 117 GLY 117 ? ? ? A . A 1 118 VAL 118 ? ? ? A . A 1 119 LYS 119 ? ? ? A . A 1 120 LEU 120 ? ? ? A . A 1 121 THR 121 ? ? ? A . A 1 122 ASP 122 ? ? ? A . A 1 123 ASN 123 ? ? ? A . A 1 124 GLN 124 ? ? ? A . A 1 125 LEU 125 ? ? ? A . A 1 126 VAL 126 ? ? ? A . A 1 127 VAL 127 ? ? ? A . A 1 128 PRO 128 ? ? ? A . A 1 129 LEU 129 ? ? ? A . A 1 130 ASP 130 ? ? ? A . A 1 131 GLY 131 ? ? ? A . A 1 132 LEU 132 ? ? ? A . A 1 133 TYR 133 ? ? ? A . A 1 134 LEU 134 ? ? ? A . A 1 135 ILE 135 ? ? ? A . A 1 136 TYR 136 ? ? ? A . A 1 137 SER 137 ? ? ? A . A 1 138 GLN 138 ? ? ? A . A 1 139 VAL 139 ? ? ? A . A 1 140 LEU 140 ? ? ? A . A 1 141 PHE 141 ? ? ? A . A 1 142 LYS 142 ? ? ? A . A 1 143 GLY 143 ? ? ? A . A 1 144 GLN 144 ? ? ? A . A 1 145 GLY 145 ? ? ? A . A 1 146 CYS 146 ? ? ? A . A 1 147 PRO 147 ? ? ? A . A 1 148 SER 148 ? ? ? A . A 1 149 THR 149 ? ? ? A . A 1 150 HIS 150 ? ? ? A . A 1 151 VAL 151 ? ? ? A . A 1 152 LEU 152 ? ? ? A . A 1 153 LEU 153 ? ? ? A . A 1 154 THR 154 ? ? ? A . A 1 155 HIS 155 ? ? ? A . A 1 156 THR 156 ? ? ? A . A 1 157 ILE 157 ? ? ? A . A 1 158 SER 158 ? ? ? A . A 1 159 ARG 159 ? ? ? A . A 1 160 LEU 160 ? ? ? A . A 1 161 ALA 161 ? ? ? A . A 1 162 VAL 162 ? ? ? A . A 1 163 SER 163 ? ? ? A . A 1 164 TYR 164 ? ? ? A . A 1 165 PRO 165 ? ? ? A . A 1 166 SER 166 ? ? ? A . A 1 167 LYS 167 ? ? ? A . A 1 168 VAL 168 ? ? ? A . A 1 169 ASN 169 ? ? ? A . A 1 170 LEU 170 ? ? ? A . A 1 171 LEU 171 ? ? ? A . A 1 172 SER 172 ? ? ? A . A 1 173 ALA 173 ? ? ? A . A 1 174 ILE 174 ? ? ? A . A 1 175 LYS 175 ? ? ? A . A 1 176 SER 176 ? ? ? A . A 1 177 PRO 177 ? ? ? A . A 1 178 CYS 178 ? ? ? A . A 1 179 HIS 179 ? ? ? A . A 1 180 THR 180 ? ? ? A . A 1 181 GLU 181 ? ? ? A . A 1 182 SER 182 ? ? ? A . A 1 183 PRO 183 ? ? ? A . A 1 184 GLU 184 ? ? ? A . A 1 185 GLN 185 ? ? ? A . A 1 186 ALA 186 ? ? ? A . A 1 187 GLU 187 ? ? ? A . A 1 188 ALA 188 ? ? ? A . A 1 189 LYS 189 ? ? ? A . A 1 190 PRO 190 ? ? ? A . A 1 191 TRP 191 ? ? ? A . A 1 192 TYR 192 ? ? ? A . A 1 193 GLU 193 ? ? ? A . A 1 194 PRO 194 ? ? ? A . A 1 195 ILE 195 ? ? ? A . A 1 196 TYR 196 ? ? ? A . A 1 197 LEU 197 ? ? ? A . A 1 198 GLY 198 ? ? ? A . A 1 199 GLY 199 ? ? ? A . A 1 200 VAL 200 ? ? ? A . A 1 201 PHE 201 ? ? ? A . A 1 202 GLN 202 ? ? ? A . A 1 203 LEU 203 ? ? ? A . A 1 204 GLU 204 ? ? ? A . A 1 205 LYS 205 ? ? ? A . A 1 206 GLY 206 ? ? ? A . A 1 207 ASP 207 ? ? ? A . A 1 208 GLN 208 ? ? ? A . A 1 209 LEU 209 ? ? ? A . A 1 210 SER 210 ? ? ? A . A 1 211 ALA 211 ? ? ? A . A 1 212 GLU 212 ? ? ? A . A 1 213 ILE 213 ? ? ? A . A 1 214 ASN 214 ? ? ? A . A 1 215 GLN 215 ? ? ? A . A 1 216 PRO 216 ? ? ? A . A 1 217 ASN 217 ? ? ? A . A 1 218 TYR 218 ? ? ? A . A 1 219 LEU 219 ? ? ? A . A 1 220 ASP 220 ? ? ? A . A 1 221 PHE 221 ? ? ? A . A 1 222 ALA 222 ? ? ? A . A 1 223 GLU 223 ? ? ? A . A 1 224 SER 224 ? ? ? A . A 1 225 GLY 225 ? ? ? A . A 1 226 GLN 226 ? ? ? A . A 1 227 VAL 227 ? ? ? A . A 1 228 TYR 228 ? ? ? A . A 1 229 PHE 229 ? ? ? A . A 1 230 GLY 230 ? ? ? A . A 1 231 ILE 231 ? ? ? A . A 1 232 ILE 232 ? ? ? A . A 1 233 ALA 233 ? ? ? A . A 1 234 LEU 234 ? ? ? A . # # loop_ _ma_data.id _ma_data.name _ma_data.content_type _ma_data.content_type_other_details 1 'Tumor necrosis factor {PDB ID=7atb, label_asym_id=A, auth_asym_id=A, SMTL ID=7atb.1.A}' 'template structure' . 2 . target . 3 'Target-template alignment by HHblits to 7atb, label_asym_id=A' 'target-template alignment' . 4 'model 2' 'model coordinates' . 5 SMTL 'reference database' . 6 PDB 'reference database' . 7 'Template search output' other 'Results of the sequence search' # # loop_ _ma_data_group.ordinal_id _ma_data_group.group_id _ma_data_group.data_id 1 1 2 2 1 5 3 1 6 4 2 7 5 3 2 6 3 1 7 3 3 8 4 1 9 4 3 10 5 4 # # loop_ _ma_data_ref_db.data_id _ma_data_ref_db.name _ma_data_ref_db.location_url _ma_data_ref_db.version _ma_data_ref_db.release_date 5 SMTL https://swissmodel.expasy.org/templates/ . 2025-01-15 6 PDB https://www.wwpdb.org . 2025-01-10 # # loop_ _ma_target_entity.entity_id _ma_target_entity.data_id _ma_target_entity.origin 1 2 'reference database' # # loop_ _ma_target_entity_instance.asym_id _ma_target_entity_instance.entity_id _ma_target_entity_instance.details A 1 . # # loop_ _ma_template_trans_matrix.id _ma_template_trans_matrix.rot_matrix[1][1] _ma_template_trans_matrix.rot_matrix[2][1] _ma_template_trans_matrix.rot_matrix[3][1] _ma_template_trans_matrix.rot_matrix[1][2] _ma_template_trans_matrix.rot_matrix[2][2] _ma_template_trans_matrix.rot_matrix[3][2] _ma_template_trans_matrix.rot_matrix[1][3] _ma_template_trans_matrix.rot_matrix[2][3] _ma_template_trans_matrix.rot_matrix[3][3] _ma_template_trans_matrix.tr_vector[1] _ma_template_trans_matrix.tr_vector[2] _ma_template_trans_matrix.tr_vector[3] 1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0 0 0 # # loop_ _ma_template_details.ordinal_id _ma_template_details.template_id _ma_template_details.template_origin _ma_template_details.template_entity_type _ma_template_details.template_trans_matrix_id _ma_template_details.template_data_id _ma_template_details.target_asym_id _ma_template_details.template_label_asym_id _ma_template_details.template_label_entity_id _ma_template_details.template_model_num _ma_template_details.template_auth_asym_id 1 1 'reference database' polymer 1 1 A A 1 1 A # # loop_ _ma_template_poly.template_id _ma_template_poly.seq_one_letter_code _ma_template_poly.seq_one_letter_code_can 1 RRCLFLSLFSFLIVLLLTTLFCLLHFGVIGPQR RRCLFLSLFSFLIVLLLTTLFCLLHFGVIGPQR # # loop_ _ma_template_poly_segment.id _ma_template_poly_segment.template_id _ma_template_poly_segment.residue_number_begin _ma_template_poly_segment.residue_number_end 1 1 1 32 # # loop_ _ma_template_ref_db_details.template_id _ma_template_ref_db_details.db_name _ma_template_ref_db_details.db_name_other_details _ma_template_ref_db_details.db_accession_code _ma_template_ref_db_details.db_version_date 1 PDB . 7atb 2024-05-15 # # loop_ _ma_target_template_poly_mapping.id _ma_target_template_poly_mapping.template_segment_id _ma_target_template_poly_mapping.target_asym_id _ma_target_template_poly_mapping.target_seq_id_begin _ma_target_template_poly_mapping.target_seq_id_end 1 1 A 1 234 # # loop_ _ma_alignment_info.alignment_id _ma_alignment_info.data_id _ma_alignment_info.software_group_id _ma_alignment_info.alignment_length _ma_alignment_info.alignment_type _ma_alignment_info.alignment_mode 1 3 1 234 'target-template pairwise alignment' local # # loop_ _ma_alignment_details.ordinal_id _ma_alignment_details.alignment_id _ma_alignment_details.template_segment_id _ma_alignment_details.target_asym_id _ma_alignment_details.score_type _ma_alignment_details.score_type_other_details _ma_alignment_details.score_value _ma_alignment_details.percent_sequence_identity _ma_alignment_details.sequence_identity_denominator _ma_alignment_details.sequence_identity_denominator_other_details 1 1 1 A 'HHblits e-value' . 8.8e-08 84.375 'Number of aligned residue pairs (not including the gaps)' . # # loop_ _ma_alignment.ordinal_id _ma_alignment.alignment_id _ma_alignment.target_template_flag _ma_alignment.sequence 1 1 1 MSTESMIRDVELAEEELAKKAGGPQGSRRCLCLSLFSFLLVAGATTLFCLLHFGVIGPQREEQLPNAFQSINPLAQTLRSSSRTPSDKPVAHVVANPQAEGQLQWLSGRANALLANGVKLTDNQLVVPLDGLYLIYSQVLFKGQGCPSTHVLLTHTISRLAVSYPSKVNLLSAIKSPCHTESPEQAEAKPWYEPIYLGGVFQLEKGDQLSAEINQPNYLDFAESGQVYFGIIAL 2 1 2 ---------------------------RRCLFLSLFSFLIVLLLTTLFCLLHFGVIGPQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # # loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.step_name _ma_protocol_step.details _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2 1 2 2 1 2 'template selection' 'template selection' 'Automatic template selection by SWISS-MODEL' 3 2 4 3 1 3 modeling 'homology modeling' 'SWISS-MODEL auto-model mode using ProMod3 on 7atb.1' 4 3 5 # # loop_ _ma_model_list.ordinal_id _ma_model_list.model_id _ma_model_list.model_group_id _ma_model_list.model_name _ma_model_list.model_group_name _ma_model_list.data_id _ma_model_list.model_type _ma_model_list.model_type_other_details 1 1 1 'model 2' . 4 'Homology model' . # # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.auth_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.label_entity_id _atom_site.auth_asym_id _atom_site.auth_comp_id _atom_site.B_iso_or_equiv _atom_site.pdbx_PDB_model_num ATOM 1 N N . ARG 28 28 ? A 23.342 7.479 1.362 1 1 A ARG 0.540 1 ATOM 2 C CA . ARG 28 28 ? A 22.261 7.773 2.377 1 1 A ARG 0.540 1 ATOM 3 C C . ARG 28 28 ? A 21.036 6.905 2.240 1 1 A ARG 0.540 1 ATOM 4 O O . ARG 28 28 ? A 20.694 6.195 3.164 1 1 A ARG 0.540 1 ATOM 5 C CB . ARG 28 28 ? A 21.785 9.261 2.342 1 1 A ARG 0.540 1 ATOM 6 C CG . ARG 28 28 ? A 20.777 9.652 3.470 1 1 A ARG 0.540 1 ATOM 7 C CD . ARG 28 28 ? A 21.289 9.555 4.918 1 1 A ARG 0.540 1 ATOM 8 N NE . ARG 28 28 ? A 22.460 10.493 5.012 1 1 A ARG 0.540 1 ATOM 9 C CZ . ARG 28 28 ? A 23.189 10.673 6.124 1 1 A ARG 0.540 1 ATOM 10 N NH1 . ARG 28 28 ? A 22.939 9.977 7.225 1 1 A ARG 0.540 1 ATOM 11 N NH2 . ARG 28 28 ? A 24.166 11.579 6.145 1 1 A ARG 0.540 1 ATOM 12 N N . ARG 29 29 ? A 20.340 6.966 1.078 1 1 A ARG 0.680 1 ATOM 13 C CA . ARG 29 29 ? A 19.214 6.110 0.788 1 1 A ARG 0.680 1 ATOM 14 C C . ARG 29 29 ? A 19.602 4.649 0.772 1 1 A ARG 0.680 1 ATOM 15 O O . ARG 29 29 ? A 20.542 4.251 0.083 1 1 A ARG 0.680 1 ATOM 16 C CB . ARG 29 29 ? A 18.641 6.472 -0.600 1 1 A ARG 0.680 1 ATOM 17 C CG . ARG 29 29 ? A 18.114 7.915 -0.701 1 1 A ARG 0.680 1 ATOM 18 C CD . ARG 29 29 ? A 17.569 8.191 -2.102 1 1 A ARG 0.680 1 ATOM 19 N NE . ARG 29 29 ? A 17.047 9.596 -2.133 1 1 A ARG 0.680 1 ATOM 20 C CZ . ARG 29 29 ? A 16.495 10.140 -3.228 1 1 A ARG 0.680 1 ATOM 21 N NH1 . ARG 29 29 ? A 16.408 9.452 -4.361 1 1 A ARG 0.680 1 ATOM 22 N NH2 . ARG 29 29 ? A 16.019 11.381 -3.196 1 1 A ARG 0.680 1 ATOM 23 N N . CYS 30 30 ? A 18.883 3.825 1.537 1 1 A CYS 0.510 1 ATOM 24 C CA . CYS 30 30 ? A 19.198 2.430 1.673 1 1 A CYS 0.510 1 ATOM 25 C C . CYS 30 30 ? A 18.282 1.649 0.771 1 1 A CYS 0.510 1 ATOM 26 O O . CYS 30 30 ? A 17.091 1.516 1.049 1 1 A CYS 0.510 1 ATOM 27 C CB . CYS 30 30 ? A 18.976 1.959 3.130 1 1 A CYS 0.510 1 ATOM 28 S SG . CYS 30 30 ? A 20.098 2.768 4.311 1 1 A CYS 0.510 1 ATOM 29 N N . LEU 31 31 ? A 18.825 1.069 -0.316 1 1 A LEU 0.480 1 ATOM 30 C CA . LEU 31 31 ? A 18.131 0.269 -1.309 1 1 A LEU 0.480 1 ATOM 31 C C . LEU 31 31 ? A 17.323 -0.887 -0.709 1 1 A LEU 0.480 1 ATOM 32 O O . LEU 31 31 ? A 16.220 -1.190 -1.136 1 1 A LEU 0.480 1 ATOM 33 C CB . LEU 31 31 ? A 19.141 -0.263 -2.380 1 1 A LEU 0.480 1 ATOM 34 C CG . LEU 31 31 ? A 20.216 -1.300 -1.928 1 1 A LEU 0.480 1 ATOM 35 C CD1 . LEU 31 31 ? A 20.771 -2.070 -3.142 1 1 A LEU 0.480 1 ATOM 36 C CD2 . LEU 31 31 ? A 21.388 -0.715 -1.110 1 1 A LEU 0.480 1 ATOM 37 N N . CYS 32 32 ? A 17.870 -1.511 0.360 1 1 A CYS 0.540 1 ATOM 38 C CA . CYS 32 32 ? A 17.254 -2.591 1.105 1 1 A CYS 0.540 1 ATOM 39 C C . CYS 32 32 ? A 16.023 -2.153 1.888 1 1 A CYS 0.540 1 ATOM 40 O O . CYS 32 32 ? A 14.974 -2.783 1.829 1 1 A CYS 0.540 1 ATOM 41 C CB . CYS 32 32 ? A 18.296 -3.210 2.078 1 1 A CYS 0.540 1 ATOM 42 S SG . CYS 32 32 ? A 19.707 -3.949 1.193 1 1 A CYS 0.540 1 ATOM 43 N N . LEU 33 33 ? A 16.112 -1.012 2.613 1 1 A LEU 0.510 1 ATOM 44 C CA . LEU 33 33 ? A 14.994 -0.426 3.334 1 1 A LEU 0.510 1 ATOM 45 C C . LEU 33 33 ? A 13.925 0.094 2.397 1 1 A LEU 0.510 1 ATOM 46 O O . LEU 33 33 ? A 12.741 -0.106 2.622 1 1 A LEU 0.510 1 ATOM 47 C CB . LEU 33 33 ? A 15.445 0.708 4.286 1 1 A LEU 0.510 1 ATOM 48 C CG . LEU 33 33 ? A 16.453 0.270 5.374 1 1 A LEU 0.510 1 ATOM 49 C CD1 . LEU 33 33 ? A 16.774 1.457 6.300 1 1 A LEU 0.510 1 ATOM 50 C CD2 . LEU 33 33 ? A 15.939 -0.923 6.204 1 1 A LEU 0.510 1 ATOM 51 N N . SER 34 34 ? A 14.338 0.716 1.269 1 1 A SER 0.560 1 ATOM 52 C CA . SER 34 34 ? A 13.443 1.173 0.216 1 1 A SER 0.560 1 ATOM 53 C C . SER 34 34 ? A 12.636 0.054 -0.383 1 1 A SER 0.560 1 ATOM 54 O O . SER 34 34 ? A 11.462 0.233 -0.680 1 1 A SER 0.560 1 ATOM 55 C CB . SER 34 34 ? A 14.171 1.846 -0.969 1 1 A SER 0.560 1 ATOM 56 O OG . SER 34 34 ? A 14.848 3.024 -0.534 1 1 A SER 0.560 1 ATOM 57 N N . LEU 35 35 ? A 13.233 -1.150 -0.550 1 1 A LEU 0.540 1 ATOM 58 C CA . LEU 35 35 ? A 12.510 -2.314 -1.024 1 1 A LEU 0.540 1 ATOM 59 C C . LEU 35 35 ? A 11.345 -2.700 -0.111 1 1 A LEU 0.540 1 ATOM 60 O O . LEU 35 35 ? A 10.218 -2.901 -0.552 1 1 A LEU 0.540 1 ATOM 61 C CB . LEU 35 35 ? A 13.469 -3.506 -1.281 1 1 A LEU 0.540 1 ATOM 62 C CG . LEU 35 35 ? A 12.888 -4.697 -2.101 1 1 A LEU 0.540 1 ATOM 63 C CD1 . LEU 35 35 ? A 12.063 -5.706 -1.273 1 1 A LEU 0.540 1 ATOM 64 C CD2 . LEU 35 35 ? A 12.122 -4.256 -3.368 1 1 A LEU 0.540 1 ATOM 65 N N . PHE 36 36 ? A 11.586 -2.706 1.217 1 1 A PHE 0.530 1 ATOM 66 C CA . PHE 36 36 ? A 10.611 -2.983 2.250 1 1 A PHE 0.530 1 ATOM 67 C C . PHE 36 36 ? A 9.476 -1.944 2.269 1 1 A PHE 0.530 1 ATOM 68 O O . PHE 36 36 ? A 8.318 -2.247 2.545 1 1 A PHE 0.530 1 ATOM 69 C CB . PHE 36 36 ? A 11.379 -3.090 3.597 1 1 A PHE 0.530 1 ATOM 70 C CG . PHE 36 36 ? A 10.513 -3.670 4.676 1 1 A PHE 0.530 1 ATOM 71 C CD1 . PHE 36 36 ? A 10.305 -5.056 4.755 1 1 A PHE 0.530 1 ATOM 72 C CD2 . PHE 36 36 ? A 9.859 -2.830 5.589 1 1 A PHE 0.530 1 ATOM 73 C CE1 . PHE 36 36 ? A 9.468 -5.596 5.740 1 1 A PHE 0.530 1 ATOM 74 C CE2 . PHE 36 36 ? A 9.019 -3.365 6.573 1 1 A PHE 0.530 1 ATOM 75 C CZ . PHE 36 36 ? A 8.829 -4.749 6.653 1 1 A PHE 0.530 1 ATOM 76 N N . SER 37 37 ? A 9.786 -0.677 1.913 1 1 A SER 0.620 1 ATOM 77 C CA . SER 37 37 ? A 8.828 0.421 1.813 1 1 A SER 0.620 1 ATOM 78 C C . SER 37 37 ? A 7.770 0.189 0.748 1 1 A SER 0.620 1 ATOM 79 O O . SER 37 37 ? A 6.597 0.505 0.945 1 1 A SER 0.620 1 ATOM 80 C CB . SER 37 37 ? A 9.478 1.802 1.539 1 1 A SER 0.620 1 ATOM 81 O OG . SER 37 37 ? A 10.401 2.119 2.580 1 1 A SER 0.620 1 ATOM 82 N N . PHE 38 38 ? A 8.151 -0.404 -0.410 1 1 A PHE 0.530 1 ATOM 83 C CA . PHE 38 38 ? A 7.234 -0.767 -1.487 1 1 A PHE 0.530 1 ATOM 84 C C . PHE 38 38 ? A 6.227 -1.835 -1.093 1 1 A PHE 0.530 1 ATOM 85 O O . PHE 38 38 ? A 5.116 -1.896 -1.607 1 1 A PHE 0.530 1 ATOM 86 C CB . PHE 38 38 ? A 7.922 -1.284 -2.769 1 1 A PHE 0.530 1 ATOM 87 C CG . PHE 38 38 ? A 8.821 -0.243 -3.357 1 1 A PHE 0.530 1 ATOM 88 C CD1 . PHE 38 38 ? A 8.350 0.966 -3.899 1 1 A PHE 0.530 1 ATOM 89 C CD2 . PHE 38 38 ? A 10.186 -0.513 -3.398 1 1 A PHE 0.530 1 ATOM 90 C CE1 . PHE 38 38 ? A 9.249 1.889 -4.454 1 1 A PHE 0.530 1 ATOM 91 C CE2 . PHE 38 38 ? A 11.094 0.413 -3.913 1 1 A PHE 0.530 1 ATOM 92 C CZ . PHE 38 38 ? A 10.624 1.617 -4.449 1 1 A PHE 0.530 1 ATOM 93 N N . LEU 39 39 ? A 6.594 -2.721 -0.153 1 1 A LEU 0.580 1 ATOM 94 C CA . LEU 39 39 ? A 5.659 -3.662 0.415 1 1 A LEU 0.580 1 ATOM 95 C C . LEU 39 39 ? A 4.594 -2.971 1.268 1 1 A LEU 0.580 1 ATOM 96 O O . LEU 39 39 ? A 3.404 -3.223 1.127 1 1 A LEU 0.580 1 ATOM 97 C CB . LEU 39 39 ? A 6.466 -4.729 1.184 1 1 A LEU 0.580 1 ATOM 98 C CG . LEU 39 39 ? A 5.696 -6.032 1.472 1 1 A LEU 0.580 1 ATOM 99 C CD1 . LEU 39 39 ? A 6.665 -7.225 1.470 1 1 A LEU 0.580 1 ATOM 100 C CD2 . LEU 39 39 ? A 4.908 -5.994 2.794 1 1 A LEU 0.580 1 ATOM 101 N N . LEU 40 40 ? A 5.001 -2.011 2.129 1 1 A LEU 0.550 1 ATOM 102 C CA . LEU 40 40 ? A 4.109 -1.251 2.992 1 1 A LEU 0.550 1 ATOM 103 C C . LEU 40 40 ? A 3.158 -0.353 2.233 1 1 A LEU 0.550 1 ATOM 104 O O . LEU 40 40 ? A 1.969 -0.305 2.535 1 1 A LEU 0.550 1 ATOM 105 C CB . LEU 40 40 ? A 4.909 -0.385 3.992 1 1 A LEU 0.550 1 ATOM 106 C CG . LEU 40 40 ? A 5.752 -1.199 4.994 1 1 A LEU 0.550 1 ATOM 107 C CD1 . LEU 40 40 ? A 6.593 -0.236 5.845 1 1 A LEU 0.550 1 ATOM 108 C CD2 . LEU 40 40 ? A 4.879 -2.094 5.895 1 1 A LEU 0.550 1 ATOM 109 N N . VAL 41 41 ? A 3.658 0.347 1.187 1 1 A VAL 0.640 1 ATOM 110 C CA . VAL 41 41 ? A 2.837 1.197 0.333 1 1 A VAL 0.640 1 ATOM 111 C C . VAL 41 41 ? A 1.739 0.396 -0.366 1 1 A VAL 0.640 1 ATOM 112 O O . VAL 41 41 ? A 0.595 0.821 -0.418 1 1 A VAL 0.640 1 ATOM 113 C CB . VAL 41 41 ? A 3.671 2.047 -0.649 1 1 A VAL 0.640 1 ATOM 114 C CG1 . VAL 41 41 ? A 4.181 1.248 -1.862 1 1 A VAL 0.640 1 ATOM 115 C CG2 . VAL 41 41 ? A 2.876 3.273 -1.135 1 1 A VAL 0.640 1 ATOM 116 N N . ALA 42 42 ? A 2.071 -0.830 -0.853 1 1 A ALA 0.720 1 ATOM 117 C CA . ALA 42 42 ? A 1.158 -1.738 -1.508 1 1 A ALA 0.720 1 ATOM 118 C C . ALA 42 42 ? A 0.167 -2.390 -0.552 1 1 A ALA 0.720 1 ATOM 119 O O . ALA 42 42 ? A -1.020 -2.485 -0.817 1 1 A ALA 0.720 1 ATOM 120 C CB . ALA 42 42 ? A 1.954 -2.822 -2.264 1 1 A ALA 0.720 1 ATOM 121 N N . GLY 43 43 ? A 0.628 -2.851 0.634 1 1 A GLY 0.680 1 ATOM 122 C CA . GLY 43 43 ? A -0.270 -3.432 1.628 1 1 A GLY 0.680 1 ATOM 123 C C . GLY 43 43 ? A -1.290 -2.469 2.190 1 1 A GLY 0.680 1 ATOM 124 O O . GLY 43 43 ? A -2.412 -2.852 2.514 1 1 A GLY 0.680 1 ATOM 125 N N . ALA 44 44 ? A -0.919 -1.175 2.288 1 1 A ALA 0.700 1 ATOM 126 C CA . ALA 44 44 ? A -1.809 -0.100 2.661 1 1 A ALA 0.700 1 ATOM 127 C C . ALA 44 44 ? A -2.831 0.257 1.587 1 1 A ALA 0.700 1 ATOM 128 O O . ALA 44 44 ? A -4.017 0.366 1.890 1 1 A ALA 0.700 1 ATOM 129 C CB . ALA 44 44 ? A -0.988 1.159 3.001 1 1 A ALA 0.700 1 ATOM 130 N N . THR 45 45 ? A -2.418 0.400 0.297 1 1 A THR 0.720 1 ATOM 131 C CA . THR 45 45 ? A -3.294 0.708 -0.842 1 1 A THR 0.720 1 ATOM 132 C C . THR 45 45 ? A -4.317 -0.367 -1.057 1 1 A THR 0.720 1 ATOM 133 O O . THR 45 45 ? A -5.432 -0.066 -1.470 1 1 A THR 0.720 1 ATOM 134 C CB . THR 45 45 ? A -2.608 0.948 -2.188 1 1 A THR 0.720 1 ATOM 135 O OG1 . THR 45 45 ? A -1.626 -0.033 -2.451 1 1 A THR 0.720 1 ATOM 136 C CG2 . THR 45 45 ? A -1.894 2.304 -2.178 1 1 A THR 0.720 1 ATOM 137 N N . THR 46 46 ? A -3.988 -1.640 -0.745 1 1 A THR 0.680 1 ATOM 138 C CA . THR 46 46 ? A -4.954 -2.733 -0.772 1 1 A THR 0.680 1 ATOM 139 C C . THR 46 46 ? A -6.140 -2.495 0.140 1 1 A THR 0.680 1 ATOM 140 O O . THR 46 46 ? A -7.276 -2.500 -0.304 1 1 A THR 0.680 1 ATOM 141 C CB . THR 46 46 ? A -4.348 -4.073 -0.376 1 1 A THR 0.680 1 ATOM 142 O OG1 . THR 46 46 ? A -3.278 -4.386 -1.245 1 1 A THR 0.680 1 ATOM 143 C CG2 . THR 46 46 ? A -5.324 -5.243 -0.556 1 1 A THR 0.680 1 ATOM 144 N N . LEU 47 47 ? A -5.918 -2.217 1.447 1 1 A LEU 0.620 1 ATOM 145 C CA . LEU 47 47 ? A -7.014 -2.031 2.387 1 1 A LEU 0.620 1 ATOM 146 C C . LEU 47 47 ? A -7.651 -0.667 2.310 1 1 A LEU 0.620 1 ATOM 147 O O . LEU 47 47 ? A -8.870 -0.548 2.287 1 1 A LEU 0.620 1 ATOM 148 C CB . LEU 47 47 ? A -6.576 -2.293 3.841 1 1 A LEU 0.620 1 ATOM 149 C CG . LEU 47 47 ? A -6.023 -3.713 4.067 1 1 A LEU 0.620 1 ATOM 150 C CD1 . LEU 47 47 ? A -5.458 -3.805 5.491 1 1 A LEU 0.620 1 ATOM 151 C CD2 . LEU 47 47 ? A -7.077 -4.812 3.818 1 1 A LEU 0.620 1 ATOM 152 N N . PHE 48 48 ? A -6.838 0.403 2.209 1 1 A PHE 0.530 1 ATOM 153 C CA . PHE 48 48 ? A -7.269 1.784 2.144 1 1 A PHE 0.530 1 ATOM 154 C C . PHE 48 48 ? A -8.207 2.024 0.960 1 1 A PHE 0.530 1 ATOM 155 O O . PHE 48 48 ? A -9.215 2.709 1.078 1 1 A PHE 0.530 1 ATOM 156 C CB . PHE 48 48 ? A -5.998 2.676 2.073 1 1 A PHE 0.530 1 ATOM 157 C CG . PHE 48 48 ? A -6.313 4.143 2.021 1 1 A PHE 0.530 1 ATOM 158 C CD1 . PHE 48 48 ? A -6.257 4.831 0.799 1 1 A PHE 0.530 1 ATOM 159 C CD2 . PHE 48 48 ? A -6.723 4.830 3.173 1 1 A PHE 0.530 1 ATOM 160 C CE1 . PHE 48 48 ? A -6.602 6.186 0.728 1 1 A PHE 0.530 1 ATOM 161 C CE2 . PHE 48 48 ? A -7.064 6.187 3.107 1 1 A PHE 0.530 1 ATOM 162 C CZ . PHE 48 48 ? A -7.000 6.866 1.885 1 1 A PHE 0.530 1 ATOM 163 N N . CYS 49 49 ? A -7.930 1.386 -0.205 1 1 A CYS 0.670 1 ATOM 164 C CA . CYS 49 49 ? A -8.829 1.436 -1.349 1 1 A CYS 0.670 1 ATOM 165 C C . CYS 49 49 ? A -10.195 0.829 -1.030 1 1 A CYS 0.670 1 ATOM 166 O O . CYS 49 49 ? A -11.219 1.427 -1.328 1 1 A CYS 0.670 1 ATOM 167 C CB . CYS 49 49 ? A -8.197 0.749 -2.598 1 1 A CYS 0.670 1 ATOM 168 S SG . CYS 49 49 ? A -9.110 0.968 -4.165 1 1 A CYS 0.670 1 ATOM 169 N N . LEU 50 50 ? A -10.247 -0.336 -0.342 1 1 A LEU 0.570 1 ATOM 170 C CA . LEU 50 50 ? A -11.479 -1.025 0.011 1 1 A LEU 0.570 1 ATOM 171 C C . LEU 50 50 ? A -12.348 -0.221 0.966 1 1 A LEU 0.570 1 ATOM 172 O O . LEU 50 50 ? A -13.573 -0.205 0.845 1 1 A LEU 0.570 1 ATOM 173 C CB . LEU 50 50 ? A -11.198 -2.424 0.621 1 1 A LEU 0.570 1 ATOM 174 C CG . LEU 50 50 ? A -10.375 -3.358 -0.296 1 1 A LEU 0.570 1 ATOM 175 C CD1 . LEU 50 50 ? A -9.755 -4.516 0.503 1 1 A LEU 0.570 1 ATOM 176 C CD2 . LEU 50 50 ? A -11.158 -3.888 -1.507 1 1 A LEU 0.570 1 ATOM 177 N N . LEU 51 51 ? A -11.696 0.483 1.916 1 1 A LEU 0.560 1 ATOM 178 C CA . LEU 51 51 ? A -12.313 1.398 2.856 1 1 A LEU 0.560 1 ATOM 179 C C . LEU 51 51 ? A -12.865 2.653 2.185 1 1 A LEU 0.560 1 ATOM 180 O O . LEU 51 51 ? A -14.012 3.020 2.391 1 1 A LEU 0.560 1 ATOM 181 C CB . LEU 51 51 ? A -11.298 1.788 3.969 1 1 A LEU 0.560 1 ATOM 182 C CG . LEU 51 51 ? A -10.729 0.584 4.760 1 1 A LEU 0.560 1 ATOM 183 C CD1 . LEU 51 51 ? A -9.634 1.041 5.740 1 1 A LEU 0.560 1 ATOM 184 C CD2 . LEU 51 51 ? A -11.830 -0.190 5.500 1 1 A LEU 0.560 1 ATOM 185 N N . HIS 52 52 ? A -12.072 3.307 1.301 1 1 A HIS 0.520 1 ATOM 186 C CA . HIS 52 52 ? A -12.477 4.520 0.604 1 1 A HIS 0.520 1 ATOM 187 C C . HIS 52 52 ? A -13.519 4.303 -0.484 1 1 A HIS 0.520 1 ATOM 188 O O . HIS 52 52 ? A -14.492 5.037 -0.591 1 1 A HIS 0.520 1 ATOM 189 C CB . HIS 52 52 ? A -11.247 5.183 -0.059 1 1 A HIS 0.520 1 ATOM 190 C CG . HIS 52 52 ? A -11.571 6.409 -0.854 1 1 A HIS 0.520 1 ATOM 191 N ND1 . HIS 52 52 ? A -11.633 7.629 -0.207 1 1 A HIS 0.520 1 ATOM 192 C CD2 . HIS 52 52 ? A -11.907 6.551 -2.156 1 1 A HIS 0.520 1 ATOM 193 C CE1 . HIS 52 52 ? A -12.004 8.481 -1.128 1 1 A HIS 0.520 1 ATOM 194 N NE2 . HIS 52 52 ? A -12.185 7.891 -2.343 1 1 A HIS 0.520 1 ATOM 195 N N . PHE 53 53 ? A -13.331 3.267 -1.339 1 1 A PHE 0.520 1 ATOM 196 C CA . PHE 53 53 ? A -14.246 2.912 -2.409 1 1 A PHE 0.520 1 ATOM 197 C C . PHE 53 53 ? A -15.579 2.444 -1.837 1 1 A PHE 0.520 1 ATOM 198 O O . PHE 53 53 ? A -16.633 2.609 -2.432 1 1 A PHE 0.520 1 ATOM 199 C CB . PHE 53 53 ? A -13.602 1.817 -3.315 1 1 A PHE 0.520 1 ATOM 200 C CG . PHE 53 53 ? A -14.350 1.615 -4.615 1 1 A PHE 0.520 1 ATOM 201 C CD1 . PHE 53 53 ? A -15.436 0.728 -4.704 1 1 A PHE 0.520 1 ATOM 202 C CD2 . PHE 53 53 ? A -13.986 2.340 -5.761 1 1 A PHE 0.520 1 ATOM 203 C CE1 . PHE 53 53 ? A -16.127 0.549 -5.908 1 1 A PHE 0.520 1 ATOM 204 C CE2 . PHE 53 53 ? A -14.680 2.175 -6.968 1 1 A PHE 0.520 1 ATOM 205 C CZ . PHE 53 53 ? A -15.747 1.272 -7.043 1 1 A PHE 0.520 1 ATOM 206 N N . GLY 54 54 ? A -15.536 1.836 -0.627 1 1 A GLY 0.600 1 ATOM 207 C CA . GLY 54 54 ? A -16.731 1.390 0.066 1 1 A GLY 0.600 1 ATOM 208 C C . GLY 54 54 ? A -17.338 0.152 -0.529 1 1 A GLY 0.600 1 ATOM 209 O O . GLY 54 54 ? A -18.540 -0.052 -0.431 1 1 A GLY 0.600 1 ATOM 210 N N . VAL 55 55 ? A -16.479 -0.698 -1.152 1 1 A VAL 0.590 1 ATOM 211 C CA . VAL 55 55 ? A -16.796 -1.882 -1.952 1 1 A VAL 0.590 1 ATOM 212 C C . VAL 55 55 ? A -17.871 -2.757 -1.328 1 1 A VAL 0.590 1 ATOM 213 O O . VAL 55 55 ? A -18.934 -2.961 -1.886 1 1 A VAL 0.590 1 ATOM 214 C CB . VAL 55 55 ? A -15.553 -2.764 -2.211 1 1 A VAL 0.590 1 ATOM 215 C CG1 . VAL 55 55 ? A -15.793 -3.650 -3.452 1 1 A VAL 0.590 1 ATOM 216 C CG2 . VAL 55 55 ? A -14.262 -1.942 -2.391 1 1 A VAL 0.590 1 ATOM 217 N N . ILE 56 56 ? A -17.560 -3.238 -0.105 1 1 A ILE 0.530 1 ATOM 218 C CA . ILE 56 56 ? A -18.389 -4.080 0.729 1 1 A ILE 0.530 1 ATOM 219 C C . ILE 56 56 ? A -17.941 -3.975 2.187 1 1 A ILE 0.530 1 ATOM 220 O O . ILE 56 56 ? A -18.495 -4.615 3.072 1 1 A ILE 0.530 1 ATOM 221 C CB . ILE 56 56 ? A -18.335 -5.553 0.284 1 1 A ILE 0.530 1 ATOM 222 C CG1 . ILE 56 56 ? A -16.972 -6.003 -0.332 1 1 A ILE 0.530 1 ATOM 223 C CG2 . ILE 56 56 ? A -19.517 -5.797 -0.690 1 1 A ILE 0.530 1 ATOM 224 C CD1 . ILE 56 56 ? A -15.760 -5.998 0.621 1 1 A ILE 0.530 1 ATOM 225 N N . GLY 57 57 ? A -16.940 -3.118 2.503 1 1 A GLY 0.570 1 ATOM 226 C CA . GLY 57 57 ? A -16.474 -2.941 3.874 1 1 A GLY 0.570 1 ATOM 227 C C . GLY 57 57 ? A -16.127 -1.506 4.157 1 1 A GLY 0.570 1 ATOM 228 O O . GLY 57 57 ? A -14.950 -1.248 4.397 1 1 A GLY 0.570 1 ATOM 229 N N . PRO 58 58 ? A -17.052 -0.547 4.128 1 1 A PRO 0.770 1 ATOM 230 C CA . PRO 58 58 ? A -16.773 0.847 4.455 1 1 A PRO 0.770 1 ATOM 231 C C . PRO 58 58 ? A -16.634 1.032 5.966 1 1 A PRO 0.770 1 ATOM 232 O O . PRO 58 58 ? A -17.586 1.472 6.612 1 1 A PRO 0.770 1 ATOM 233 C CB . PRO 58 58 ? A -18.016 1.574 3.894 1 1 A PRO 0.770 1 ATOM 234 C CG . PRO 58 58 ? A -19.165 0.571 4.071 1 1 A PRO 0.770 1 ATOM 235 C CD . PRO 58 58 ? A -18.478 -0.778 3.871 1 1 A PRO 0.770 1 ATOM 236 N N . GLN 59 59 ? A -15.474 0.671 6.540 1 1 A GLN 0.760 1 ATOM 237 C CA . GLN 59 59 ? A -15.136 0.893 7.932 1 1 A GLN 0.760 1 ATOM 238 C C . GLN 59 59 ? A -14.355 2.217 8.133 1 1 A GLN 0.760 1 ATOM 239 O O . GLN 59 59 ? A -14.003 2.886 7.124 1 1 A GLN 0.760 1 ATOM 240 C CB . GLN 59 59 ? A -14.271 -0.275 8.479 1 1 A GLN 0.760 1 ATOM 241 C CG . GLN 59 59 ? A -14.958 -1.654 8.345 1 1 A GLN 0.760 1 ATOM 242 C CD . GLN 59 59 ? A -14.122 -2.765 8.985 1 1 A GLN 0.760 1 ATOM 243 O OE1 . GLN 59 59 ? A -13.408 -2.603 9.957 1 1 A GLN 0.760 1 ATOM 244 N NE2 . GLN 59 59 ? A -14.237 -3.997 8.415 1 1 A GLN 0.760 1 ATOM 245 O OXT . GLN 59 59 ? A -14.093 2.556 9.319 1 1 A GLN 0.760 1 # # loop_ _atom_type.symbol C N O S # # loop_ _ma_qa_metric.id _ma_qa_metric.name _ma_qa_metric.description _ma_qa_metric.type _ma_qa_metric.mode _ma_qa_metric.type_other_details _ma_qa_metric.software_group_id 1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' local . 5 2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' global . 5 3 GMQE 'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.' 'normalized score' global . 6 # # loop_ _ma_qa_metric_global.ordinal_id _ma_qa_metric_global.model_id _ma_qa_metric_global.metric_id _ma_qa_metric_global.metric_value 1 1 2 0.597 2 1 3 0.018 # # loop_ _ma_qa_metric_local.ordinal_id _ma_qa_metric_local.model_id _ma_qa_metric_local.label_asym_id _ma_qa_metric_local.label_seq_id _ma_qa_metric_local.label_comp_id _ma_qa_metric_local.metric_id _ma_qa_metric_local.metric_value 1 1 A 28 ARG 1 0.540 2 1 A 29 ARG 1 0.680 3 1 A 30 CYS 1 0.510 4 1 A 31 LEU 1 0.480 5 1 A 32 CYS 1 0.540 6 1 A 33 LEU 1 0.510 7 1 A 34 SER 1 0.560 8 1 A 35 LEU 1 0.540 9 1 A 36 PHE 1 0.530 10 1 A 37 SER 1 0.620 11 1 A 38 PHE 1 0.530 12 1 A 39 LEU 1 0.580 13 1 A 40 LEU 1 0.550 14 1 A 41 VAL 1 0.640 15 1 A 42 ALA 1 0.720 16 1 A 43 GLY 1 0.680 17 1 A 44 ALA 1 0.700 18 1 A 45 THR 1 0.720 19 1 A 46 THR 1 0.680 20 1 A 47 LEU 1 0.620 21 1 A 48 PHE 1 0.530 22 1 A 49 CYS 1 0.670 23 1 A 50 LEU 1 0.570 24 1 A 51 LEU 1 0.560 25 1 A 52 HIS 1 0.520 26 1 A 53 PHE 1 0.520 27 1 A 54 GLY 1 0.600 28 1 A 55 VAL 1 0.590 29 1 A 56 ILE 1 0.530 30 1 A 57 GLY 1 0.570 31 1 A 58 PRO 1 0.770 32 1 A 59 GLN 1 0.760 # # loop_ _pdbx_data_usage.id _pdbx_data_usage.type _pdbx_data_usage.details _pdbx_data_usage.url 1 license ;This SWISS-MODEL protein model is copyright. 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