data_SMR-c24691d9f1bff8e12c0f39dd0d0acce2_2 _entry.id SMR-c24691d9f1bff8e12c0f39dd0d0acce2_2 _struct.entry_id SMR-c24691d9f1bff8e12c0f39dd0d0acce2_2 _struct.pdbx_model_details ;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries: - A0A1S3A8S4/ A0A1S3A8S4_ERIEU, YY1-associated factor 2 isoform X2 - A0A2I3HQ57/ A0A2I3HQ57_NOMLE, YY1 associated factor 2 - A0A2I3RVQ0/ A0A2I3RVQ0_PANTR, YY1 associated factor 2 - A0A2K5PJM6/ A0A2K5PJM6_CEBIM, YY1 associated factor 2 - A0A2R9AVI9/ A0A2R9AVI9_PANPA, YY1 associated factor 2 - A0A2U3VM23/ A0A2U3VM23_ODORO, YY1-associated factor 2 isoform X4 - A0A340X779/ A0A340X779_LIPVE, YY1-associated factor 2 isoform X3 - A0A4W2GY11/ A0A4W2GY11_BOBOX, YY1 associated factor 2 - A0A667GDH8/ A0A667GDH8_LYNCA, YY1 associated factor 2 - A0A673URQ9/ A0A673URQ9_SURSU, YY1 associated factor 2 - A0A6D2X503/ A0A6D2X503_PANTR, YAF2 isoform 4 - A0A7J8JQM2/ A0A7J8JQM2_ROUAE, YY1 associated factor 2 - A0A8B6ZQ88/ A0A8B6ZQ88_ORYAF, YY1-associated factor 2 isoform X3 - A0A8C0DIG2/ A0A8C0DIG2_BALMU, YY1 associated factor 2 - A0A8C0NXN3/ A0A8C0NXN3_CANLF, YY1 associated factor 2 - A0A8C5UZF6/ A0A8C5UZF6_MICMU, YY1 associated factor 2 - A0A8C6CUK4/ A0A8C6CUK4_MOSMO, YY1 associated factor 2 - A0A8C6FBP5/ A0A8C6FBP5_MONMO, YY1 associated factor 2 - A0A8C7AQI1/ A0A8C7AQI1_NEOVI, YY1 associated factor 2 - A0A8C8YA07/ A0A8C8YA07_PANLE, YY1 associated factor 2 - A0A8C8ZR30/ A0A8C8ZR30_PROSS, YY1 associated factor 2 - A0A8C9CUD2/ A0A8C9CUD2_PHOSS, YY1 associated factor 2 - A0A8D2DVB5/ A0A8D2DVB5_SCIVU, YY1 associated factor 2 - A0A8I3QLE0/ A0A8I3QLE0_CANLF, YY1 associated factor 2 - A0A8I3X0T3/ A0A8I3X0T3_CALJA, YY1 associated factor 2 - A0AAA9S2U8/ A0AAA9S2U8_BOVIN, YY1 associated factor 2 - G1M5H0/ G1M5H0_AILME, YY1 associated factor 2 - M3X3K1/ M3X3K1_FELCA, YY1 associated factor 2 - Q8IY57 (isoform 5)/ YAF2_HUMAN, YY1-associated factor 2 Estimated model accuracy of this model is 0.113, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE). ; _struct.pdbx_structure_determination_methodology computational _struct.title 'Model for UniProtKB entries A0A1S3A8S4, A0A2I3HQ57, A0A2I3RVQ0, A0A2K5PJM6, A0A2R9AVI9, A0A2U3VM23, A0A340X779, A0A4W2GY11, A0A667GDH8, A0A673URQ9, A0A6D2X503, A0A7J8JQM2, A0A8B6ZQ88, A0A8C0DIG2, A0A8C0NXN3, A0A8C5UZF6, A0A8C6CUK4, A0A8C6FBP5, A0A8C7AQI1, A0A8C8YA07, A0A8C8ZR30, A0A8C9CUD2, A0A8D2DVB5, A0A8I3QLE0, A0A8I3X0T3, A0AAA9S2U8, G1M5H0, M3X3K1, Q8IY57 (isoform 5)' _audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic _audit_conform.dict_name mmcif_ma.dic _audit_conform.dict_version 1.4.6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SWISS-MODEL Repository - new features and functionality' 'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132 2 'SWISS-MODEL: homology modelling of protein structures and complexes' 'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427 3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1) 1 18 2021 33507980 10.1371/journal.pcbi.1008667 4 'QMEANDisCo - distance constraints applied on model quality estimation' Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828 5 'OpenStructure: an integrated software framework for computational structural biology' 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579 10.1107/S0907444913007051 6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500 10.1186/1471-2105-10-421 7 'HH-suite3 for fast remote homology detection and deep protein annotation' 'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7 # # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bienert, S.' 1 primary 'Waterhouse, A.' 2 primary 'de Beer, T.A.P.' 3 primary 'Tauriello, G.' 4 primary 'Studer, G.' 5 primary 'Bordoli, L.' 6 primary 'Schwede, T.' 7 2 'Waterhouse, A.' 8 2 'Bertoni, M.' 9 2 'Bienert, S.' 10 2 'Studer, G.' 11 2 'Tauriello, G.' 12 2 'Gumienny, R.' 13 2 'Heer, F.T.' 14 2 'de Beer, T.A.P.' 15 2 'Rempfer, C.' 16 2 'Bordoli, L.' 17 2 'Lepore, R.' 18 2 'Schwede, T.' 19 3 'Studer, G.' 20 3 'Tauriello, G.' 21 3 'Bienert, S.' 22 3 'Biasini, M.' 23 3 'Johner, N.' 24 3 'Schwede, T.' 25 4 'Studer, G.' 26 4 'Rempfer, C.' 27 4 'Waterhouse, A.M.' 28 4 'Gumienny, R.' 29 4 'Haas, J.' 30 4 'Schwede, T.' 31 5 'Biasini, M.' 32 5 'Schmidt, T.' 33 5 'Bienert, S.' 34 5 'Mariani, V.' 35 5 'Studer, G.' 36 5 'Haas, J.' 37 5 'Johner, N.' 38 5 'Schenk, A.D.' 39 5 'Philippsen, A.' 40 5 'Schwede, T.' 41 6 'Camacho, C.' 42 6 'Coulouris, G.' 43 6 'Avagyan, V.' 44 6 'Ma, N.' 45 6 'Papadopoulos, J.' 46 6 'Bealer, K.' 47 6 'Madden, T.L.' 48 7 'Steinegger, M.' 49 7 'Meier, M.' 50 7 'Mirdita, M.' 51 7 'Vohringer, H.' 52 7 'Haunsberger, S.J.' 53 7 'Soding, J.' 54 # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location _software.citation_id 1 SWISS-MODEL 'model building' 'Homology modelling web service' 3ef406dae3f6eb8b74980f2a6e69a2109acde4aa package https://swissmodel.expasy.org 2 2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library https://git.scicore.unibas.ch/schwede/ProMod3 3 3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1 library https://git.scicore.unibas.ch/schwede/QMEAN 4 4 OpenStructure 'data processing' 'Open-Source Computational Structural Biology Framework' 2.8.0 package https://openstructure.org/ 5 5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6 6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0 package https://github.com/soedinglab/hh-suite 7 # # loop_ _ma_software_group.ordinal_id _ma_software_group.group_id _ma_software_group.software_id _ma_software_group.parameter_group_id 1 1 6 . 2 2 1 . 3 2 4 . 4 2 5 . 5 2 6 . 6 3 1 . 7 3 4 . 8 4 1 . 9 4 2 . 10 4 4 . 11 5 3 . 12 6 1 . 13 6 3 . 14 6 4 . # # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bienert, S.' 1 'Waterhouse, A.' 2 'de Beer, T.A.P.' 3 'Tauriello, G.' 4 'Studer, G.' 5 'Bordoli, L.' 6 'Schwede, T.' 7 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight _chem_comp.ma_provenance ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core' ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core' ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core' ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core' CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core' GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core' GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core' GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core' HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core' ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core' MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core' PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core' PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core' SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core' THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core' TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core' TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core' VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core' # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man . 17614.086 1 . # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP A0A4W2GY11_BOBOX A0A4W2GY11 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 2 1 UNP A0A8C0NXN3_CANLF A0A8C0NXN3 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 3 1 UNP A0A2K5PJM6_CEBIM A0A2K5PJM6 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 4 1 UNP A0A8I3X0T3_CALJA A0A8I3X0T3 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 5 1 UNP A0A8C6FBP5_MONMO A0A8C6FBP5 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 6 1 UNP A0AAA9S2U8_BOVIN A0AAA9S2U8 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 7 1 UNP A0A8B6ZQ88_ORYAF A0A8B6ZQ88 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1-associated factor 2 isoform X3' 8 1 UNP A0A8C8YA07_PANLE A0A8C8YA07 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 9 1 UNP A0A2I3RVQ0_PANTR A0A2I3RVQ0 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 10 1 UNP A0A6D2X503_PANTR A0A6D2X503 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YAF2 isoform 4' 11 1 UNP A0A8C8ZR30_PROSS A0A8C8ZR30 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 12 1 UNP M3X3K1_FELCA M3X3K1 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 13 1 UNP A0A8C5UZF6_MICMU A0A8C5UZF6 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 14 1 UNP A0A340X779_LIPVE A0A340X779 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1-associated factor 2 isoform X3' 15 1 UNP A0A7J8JQM2_ROUAE A0A7J8JQM2 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 16 1 UNP A0A2R9AVI9_PANPA A0A2R9AVI9 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 17 1 UNP A0A8C6CUK4_MOSMO A0A8C6CUK4 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 18 1 UNP A0A8C7AQI1_NEOVI A0A8C7AQI1 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 19 1 UNP A0A673URQ9_SURSU A0A673URQ9 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 20 1 UNP A0A2I3HQ57_NOMLE A0A2I3HQ57 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 21 1 UNP A0A8I3QLE0_CANLF A0A8I3QLE0 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 22 1 UNP G1M5H0_AILME G1M5H0 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 23 1 UNP A0A667GDH8_LYNCA A0A667GDH8 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 24 1 UNP A0A8C9CUD2_PHOSS A0A8C9CUD2 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 25 1 UNP A0A8C0DIG2_BALMU A0A8C0DIG2 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 26 1 UNP A0A2U3VM23_ODORO A0A2U3VM23 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1-associated factor 2 isoform X4' 27 1 UNP A0A1S3A8S4_ERIEU A0A1S3A8S4 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1-associated factor 2 isoform X2' 28 1 UNP A0A8D2DVB5_SCIVU A0A8D2DVB5 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1 associated factor 2' 29 1 UNP YAF2_HUMAN Q8IY57 1 ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; 'YY1-associated factor 2' # # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 138 1 138 2 2 1 138 1 138 3 3 1 138 1 138 4 4 1 138 1 138 5 5 1 138 1 138 6 6 1 138 1 138 7 7 1 138 1 138 8 8 1 138 1 138 9 9 1 138 1 138 10 10 1 138 1 138 11 11 1 138 1 138 12 12 1 138 1 138 13 13 1 138 1 138 14 14 1 138 1 138 15 15 1 138 1 138 16 16 1 138 1 138 17 17 1 138 1 138 18 18 1 138 1 138 19 19 1 138 1 138 20 20 1 138 1 138 21 21 1 138 1 138 22 22 1 138 1 138 23 23 1 138 1 138 24 24 1 138 1 138 25 25 1 138 1 138 26 26 1 138 1 138 27 27 1 138 1 138 28 28 1 138 1 138 29 29 1 138 1 138 # # loop_ _ma_target_ref_db_details.target_entity_id _ma_target_ref_db_details.db_name _ma_target_ref_db_details.db_name_other_details _ma_target_ref_db_details.db_code _ma_target_ref_db_details.db_accession _ma_target_ref_db_details.seq_db_isoform _ma_target_ref_db_details.seq_db_align_begin _ma_target_ref_db_details.seq_db_align_end _ma_target_ref_db_details.ncbi_taxonomy_id _ma_target_ref_db_details.organism_scientific _ma_target_ref_db_details.seq_db_sequence_version_date _ma_target_ref_db_details.seq_db_sequence_checksum 1 UNP . A0A4W2GY11_BOBOX A0A4W2GY11 . 1 138 30522 'Bos indicus x Bos taurus (Hybrid cattle)' 2019-09-18 3E1E2E64F1003EC5 1 UNP . A0A8C0NXN3_CANLF A0A8C0NXN3 . 1 138 9615 'Canis lupus familiaris (Dog) (Canis familiaris)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0A2K5PJM6_CEBIM A0A2K5PJM6 . 1 138 2715852 'Cebus imitator (Panamanian white-faced capuchin) (Cebus capucinusimitator)' 2018-03-28 3E1E2E64F1003EC5 1 UNP . A0A8I3X0T3_CALJA A0A8I3X0T3 . 1 138 9483 'Callithrix jacchus (White-tufted-ear marmoset)' 2022-05-25 3E1E2E64F1003EC5 1 UNP . A0A8C6FBP5_MONMO A0A8C6FBP5 . 1 138 40151 'Monodon monoceros (Narwhal) (Ceratodon monodon)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0AAA9S2U8_BOVIN A0AAA9S2U8 . 1 138 9913 'Bos taurus (Bovine)' 2024-05-29 3E1E2E64F1003EC5 1 UNP . A0A8B6ZQ88_ORYAF A0A8B6ZQ88 . 1 138 1230840 'Orycteropus afer afer' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0A8C8YA07_PANLE A0A8C8YA07 . 1 138 9689 'Panthera leo (Lion)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0A2I3RVQ0_PANTR A0A2I3RVQ0 . 1 138 9598 'Pan troglodytes (Chimpanzee)' 2018-02-28 3E1E2E64F1003EC5 1 UNP . A0A6D2X503_PANTR A0A6D2X503 . 1 138 9598 'Pan troglodytes (Chimpanzee)' 2020-06-17 3E1E2E64F1003EC5 1 UNP . A0A8C8ZR30_PROSS A0A8C8ZR30 . 1 138 1328070 'Prolemur simus (Greater bamboo lemur) (Hapalemur simus)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . M3X3K1_FELCA M3X3K1 . 1 138 9685 'Felis catus (Cat) (Felis silvestris catus)' 2018-10-10 3E1E2E64F1003EC5 1 UNP . A0A8C5UZF6_MICMU A0A8C5UZF6 . 1 138 30608 'Microcebus murinus (Gray mouse lemur) (Lemur murinus)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0A340X779_LIPVE A0A340X779 . 1 138 118797 'Lipotes vexillifer (Yangtze river dolphin)' 2018-10-10 3E1E2E64F1003EC5 1 UNP . A0A7J8JQM2_ROUAE A0A7J8JQM2 . 1 138 9407 'Rousettus aegyptiacus (Egyptian fruit bat) (Pteropus aegyptiacus)' 2021-04-07 3E1E2E64F1003EC5 1 UNP . A0A2R9AVI9_PANPA A0A2R9AVI9 . 1 138 9597 'Pan paniscus (Pygmy chimpanzee) (Bonobo)' 2018-06-20 3E1E2E64F1003EC5 1 UNP . A0A8C6CUK4_MOSMO A0A8C6CUK4 . 1 138 68415 'Moschus moschiferus (Siberian musk deer) (Moschus sibiricus)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0A8C7AQI1_NEOVI A0A8C7AQI1 . 1 138 452646 'Neovison vison (American mink) (Mustela vison)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0A673URQ9_SURSU A0A673URQ9 . 1 138 37032 'Suricata suricatta (Meerkat)' 2020-06-17 3E1E2E64F1003EC5 1 UNP . A0A2I3HQ57_NOMLE A0A2I3HQ57 . 1 138 61853 'Nomascus leucogenys (Northern white-cheeked gibbon) (Hylobates leucogenys)' 2018-02-28 3E1E2E64F1003EC5 1 UNP . A0A8I3QLE0_CANLF A0A8I3QLE0 . 1 138 9615 'Canis lupus familiaris (Dog) (Canis familiaris)' 2022-05-25 3E1E2E64F1003EC5 1 UNP . G1M5H0_AILME G1M5H0 . 1 138 9646 'Ailuropoda melanoleuca (Giant panda)' 2021-06-02 3E1E2E64F1003EC5 1 UNP . A0A667GDH8_LYNCA A0A667GDH8 . 1 138 61383 'Lynx canadensis (Canada lynx) (Felis canadensis)' 2020-06-17 3E1E2E64F1003EC5 1 UNP . A0A8C9CUD2_PHOSS A0A8C9CUD2 . 1 138 42100 'Phocoena sinus (Vaquita)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0A8C0DIG2_BALMU A0A8C0DIG2 . 1 138 9771 'Balaenoptera musculus (Blue whale)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . A0A2U3VM23_ODORO A0A2U3VM23 . 1 138 9708 'Odobenus rosmarus divergens (Pacific walrus)' 2018-07-18 3E1E2E64F1003EC5 1 UNP . A0A1S3A8S4_ERIEU A0A1S3A8S4 . 1 138 9365 'Erinaceus europaeus (Western European hedgehog)' 2017-04-12 3E1E2E64F1003EC5 1 UNP . A0A8D2DVB5_SCIVU A0A8D2DVB5 . 1 138 55149 'Sciurus vulgaris (Eurasian red squirrel)' 2022-01-19 3E1E2E64F1003EC5 1 UNP . YAF2_HUMAN Q8IY57 Q8IY57-5 1 138 9606 'Homo sapiens (Human)' 2008-11-25 3E1E2E64F1003EC5 # # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polypeptide(L) no no M ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; ;MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH ; # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET . 1 2 GLY . 1 3 ASP . 1 4 LYS . 1 5 LYS . 1 6 SER . 1 7 PRO . 1 8 THR . 1 9 ARG . 1 10 LYS . 1 11 PRO . 1 12 ARG . 1 13 PRO . 1 14 VAL . 1 15 SER . 1 16 GLN . 1 17 LEU . 1 18 VAL . 1 19 ALA . 1 20 GLN . 1 21 GLN . 1 22 VAL . 1 23 THR . 1 24 GLN . 1 25 GLN . 1 26 PHE . 1 27 VAL . 1 28 PRO . 1 29 PRO . 1 30 THR . 1 31 GLN . 1 32 SER . 1 33 LYS . 1 34 LYS . 1 35 GLU . 1 36 LYS . 1 37 LYS . 1 38 ASP . 1 39 LYS . 1 40 VAL . 1 41 GLU . 1 42 LYS . 1 43 GLU . 1 44 LYS . 1 45 SER . 1 46 GLU . 1 47 LYS . 1 48 GLU . 1 49 THR . 1 50 THR . 1 51 SER . 1 52 LYS . 1 53 LYS . 1 54 ASN . 1 55 SER . 1 56 HIS . 1 57 LYS . 1 58 LYS . 1 59 THR . 1 60 ARG . 1 61 PRO . 1 62 ARG . 1 63 LEU . 1 64 LYS . 1 65 ASN . 1 66 VAL . 1 67 ASP . 1 68 ARG . 1 69 SER . 1 70 SER . 1 71 ALA . 1 72 GLN . 1 73 HIS . 1 74 LEU . 1 75 GLU . 1 76 VAL . 1 77 THR . 1 78 VAL . 1 79 GLY . 1 80 ASP . 1 81 LEU . 1 82 THR . 1 83 VAL . 1 84 ILE . 1 85 ILE . 1 86 THR . 1 87 ASP . 1 88 PHE . 1 89 LYS . 1 90 GLU . 1 91 LYS . 1 92 THR . 1 93 LYS . 1 94 SER . 1 95 PRO . 1 96 PRO . 1 97 ALA . 1 98 SER . 1 99 SER . 1 100 ALA . 1 101 ALA . 1 102 SER . 1 103 ALA . 1 104 ASP . 1 105 GLN . 1 106 HIS . 1 107 SER . 1 108 GLN . 1 109 SER . 1 110 GLY . 1 111 SER . 1 112 SER . 1 113 SER . 1 114 ASP . 1 115 ASN . 1 116 THR . 1 117 GLU . 1 118 ARG . 1 119 GLY . 1 120 MET . 1 121 SER . 1 122 ARG . 1 123 SER . 1 124 SER . 1 125 SER . 1 126 PRO . 1 127 ARG . 1 128 GLY . 1 129 GLU . 1 130 ALA . 1 131 SER . 1 132 SER . 1 133 LEU . 1 134 ASN . 1 135 GLY . 1 136 GLU . 1 137 SER . 1 138 HIS . # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 . # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 ? ? ? M . A 1 2 GLY 2 ? ? ? M . A 1 3 ASP 3 3 ASP ASP M . A 1 4 LYS 4 4 LYS LYS M . A 1 5 LYS 5 5 LYS LYS M . A 1 6 SER 6 6 SER SER M . A 1 7 PRO 7 7 PRO PRO M . A 1 8 THR 8 8 THR THR M . A 1 9 ARG 9 9 ARG ARG M . A 1 10 LYS 10 10 LYS LYS M . A 1 11 PRO 11 11 PRO PRO M . A 1 12 ARG 12 12 ARG ARG M . A 1 13 PRO 13 13 PRO PRO M . A 1 14 VAL 14 14 VAL VAL M . A 1 15 SER 15 15 SER SER M . A 1 16 GLN 16 16 GLN GLN M . A 1 17 LEU 17 17 LEU LEU M . A 1 18 VAL 18 18 VAL VAL M . A 1 19 ALA 19 19 ALA ALA M . A 1 20 GLN 20 ? ? ? M . A 1 21 GLN 21 ? ? ? M . A 1 22 VAL 22 ? ? ? M . A 1 23 THR 23 ? ? ? M . A 1 24 GLN 24 ? ? ? M . A 1 25 GLN 25 ? ? ? M . A 1 26 PHE 26 ? ? ? M . A 1 27 VAL 27 ? ? ? M . A 1 28 PRO 28 ? ? ? M . A 1 29 PRO 29 ? ? ? M . A 1 30 THR 30 ? ? ? M . A 1 31 GLN 31 ? ? ? M . A 1 32 SER 32 ? ? ? M . A 1 33 LYS 33 ? ? ? M . A 1 34 LYS 34 ? ? ? M . A 1 35 GLU 35 ? ? ? M . A 1 36 LYS 36 ? ? ? M . A 1 37 LYS 37 ? ? ? M . A 1 38 ASP 38 ? ? ? M . A 1 39 LYS 39 ? ? ? M . A 1 40 VAL 40 ? ? ? M . A 1 41 GLU 41 ? ? ? M . A 1 42 LYS 42 ? ? ? M . A 1 43 GLU 43 ? ? ? M . A 1 44 LYS 44 ? ? ? M . A 1 45 SER 45 ? ? ? M . A 1 46 GLU 46 ? ? ? M . A 1 47 LYS 47 ? ? ? M . A 1 48 GLU 48 ? ? ? M . A 1 49 THR 49 ? ? ? M . A 1 50 THR 50 ? ? ? M . A 1 51 SER 51 ? ? ? M . A 1 52 LYS 52 ? ? ? M . A 1 53 LYS 53 ? ? ? M . A 1 54 ASN 54 ? ? ? M . A 1 55 SER 55 ? ? ? M . A 1 56 HIS 56 ? ? ? M . A 1 57 LYS 57 ? ? ? M . A 1 58 LYS 58 ? ? ? M . A 1 59 THR 59 ? ? ? M . A 1 60 ARG 60 ? ? ? M . A 1 61 PRO 61 ? ? ? M . A 1 62 ARG 62 ? ? ? M . A 1 63 LEU 63 ? ? ? M . A 1 64 LYS 64 ? ? ? M . A 1 65 ASN 65 ? ? ? M . A 1 66 VAL 66 ? ? ? M . A 1 67 ASP 67 ? ? ? M . A 1 68 ARG 68 ? ? ? M . A 1 69 SER 69 ? ? ? M . A 1 70 SER 70 ? ? ? M . A 1 71 ALA 71 ? ? ? M . A 1 72 GLN 72 ? ? ? M . A 1 73 HIS 73 ? ? ? M . A 1 74 LEU 74 ? ? ? M . A 1 75 GLU 75 ? ? ? M . A 1 76 VAL 76 ? ? ? M . A 1 77 THR 77 ? ? ? M . A 1 78 VAL 78 ? ? ? M . A 1 79 GLY 79 ? ? ? M . A 1 80 ASP 80 ? ? ? M . A 1 81 LEU 81 ? ? ? M . A 1 82 THR 82 ? ? ? M . A 1 83 VAL 83 ? ? ? M . A 1 84 ILE 84 ? ? ? M . A 1 85 ILE 85 ? ? ? M . A 1 86 THR 86 ? ? ? M . A 1 87 ASP 87 ? ? ? M . A 1 88 PHE 88 ? ? ? M . A 1 89 LYS 89 ? ? ? M . A 1 90 GLU 90 ? ? ? M . A 1 91 LYS 91 ? ? ? M . A 1 92 THR 92 ? ? ? M . A 1 93 LYS 93 ? ? ? M . A 1 94 SER 94 ? ? ? M . A 1 95 PRO 95 ? ? ? M . A 1 96 PRO 96 ? ? ? M . A 1 97 ALA 97 ? ? ? M . A 1 98 SER 98 ? ? ? M . A 1 99 SER 99 ? ? ? M . A 1 100 ALA 100 ? ? ? M . A 1 101 ALA 101 ? ? ? M . A 1 102 SER 102 ? ? ? M . A 1 103 ALA 103 ? ? ? M . A 1 104 ASP 104 ? ? ? M . A 1 105 GLN 105 ? ? ? M . A 1 106 HIS 106 ? ? ? M . A 1 107 SER 107 ? ? ? M . A 1 108 GLN 108 ? ? ? M . A 1 109 SER 109 ? ? ? M . A 1 110 GLY 110 ? ? ? M . A 1 111 SER 111 ? ? ? M . A 1 112 SER 112 ? ? ? M . A 1 113 SER 113 ? ? ? M . A 1 114 ASP 114 ? ? ? M . A 1 115 ASN 115 ? ? ? M . A 1 116 THR 116 ? ? ? M . A 1 117 GLU 117 ? ? ? M . A 1 118 ARG 118 ? ? ? M . A 1 119 GLY 119 ? ? ? M . A 1 120 MET 120 ? ? ? M . A 1 121 SER 121 ? ? ? M . A 1 122 ARG 122 ? ? ? M . A 1 123 SER 123 ? ? ? M . A 1 124 SER 124 ? ? ? M . A 1 125 SER 125 ? ? ? M . A 1 126 PRO 126 ? ? ? M . A 1 127 ARG 127 ? ? ? M . A 1 128 GLY 128 ? ? ? M . A 1 129 GLU 129 ? ? ? M . A 1 130 ALA 130 ? ? ? M . A 1 131 SER 131 ? ? ? M . A 1 132 SER 132 ? ? ? M . A 1 133 LEU 133 ? ? ? M . A 1 134 ASN 134 ? ? ? M . A 1 135 GLY 135 ? ? ? M . A 1 136 GLU 136 ? ? ? M . A 1 137 SER 137 ? ? ? M . A 1 138 HIS 138 ? ? ? M . # # loop_ _ma_data.id _ma_data.name _ma_data.content_type _ma_data.content_type_other_details 1 'RING1 and YY1-binding protein {PDB ID=9dby, label_asym_id=M, auth_asym_id=M, SMTL ID=9dby.1.M}' 'template structure' . 2 . target . 3 'Target-template alignment by HHblits to 9dby, label_asym_id=M' 'target-template alignment' . 4 'model 2' 'model coordinates' . 5 SMTL 'reference database' . 6 PDB 'reference database' . 7 'Template search output' other 'Results of the sequence search' # # loop_ _ma_data_group.ordinal_id _ma_data_group.group_id _ma_data_group.data_id 1 1 2 2 1 5 3 1 6 4 2 7 5 3 2 6 3 1 7 3 3 8 4 1 9 4 3 10 5 4 # # loop_ _ma_data_ref_db.data_id _ma_data_ref_db.name _ma_data_ref_db.location_url _ma_data_ref_db.version _ma_data_ref_db.release_date 5 SMTL https://swissmodel.expasy.org/templates/ . 2025-01-22 6 PDB https://www.wwpdb.org . 2025-01-17 # # loop_ _ma_target_entity.entity_id _ma_target_entity.data_id _ma_target_entity.origin 1 2 'reference database' # # loop_ _ma_target_entity_instance.asym_id _ma_target_entity_instance.entity_id _ma_target_entity_instance.details A 1 . # # loop_ _ma_template_trans_matrix.id _ma_template_trans_matrix.rot_matrix[1][1] _ma_template_trans_matrix.rot_matrix[2][1] _ma_template_trans_matrix.rot_matrix[3][1] _ma_template_trans_matrix.rot_matrix[1][2] _ma_template_trans_matrix.rot_matrix[2][2] _ma_template_trans_matrix.rot_matrix[3][2] _ma_template_trans_matrix.rot_matrix[1][3] _ma_template_trans_matrix.rot_matrix[2][3] _ma_template_trans_matrix.rot_matrix[3][3] _ma_template_trans_matrix.tr_vector[1] _ma_template_trans_matrix.tr_vector[2] _ma_template_trans_matrix.tr_vector[3] 1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0 0 0 # # loop_ _ma_template_details.ordinal_id _ma_template_details.template_id _ma_template_details.template_origin _ma_template_details.template_entity_type _ma_template_details.template_trans_matrix_id _ma_template_details.template_data_id _ma_template_details.target_asym_id _ma_template_details.template_label_asym_id _ma_template_details.template_label_entity_id _ma_template_details.template_model_num _ma_template_details.template_auth_asym_id 1 1 'reference database' polymer 1 1 A M 10 1 M # # loop_ _ma_template_poly.template_id _ma_template_poly.seq_one_letter_code _ma_template_poly.seq_one_letter_code_can 1 ;MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQQVAQQY ATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSET NHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSSSGSESTDKGS SRSSTPKGDMSAVNDESF ; ;MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQQVAQQY ATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSET NHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSSSGSESTDKGS SRSSTPKGDMSAVNDESF ; # # loop_ _ma_template_poly_segment.id _ma_template_poly_segment.template_id _ma_template_poly_segment.residue_number_begin _ma_template_poly_segment.residue_number_end 1 1 47 228 # # loop_ _ma_template_ref_db_details.template_id _ma_template_ref_db_details.db_name _ma_template_ref_db_details.db_name_other_details _ma_template_ref_db_details.db_accession_code _ma_template_ref_db_details.db_version_date 1 PDB . 9dby 2025-01-15 # # loop_ _ma_target_template_poly_mapping.id _ma_target_template_poly_mapping.template_segment_id _ma_target_template_poly_mapping.target_asym_id _ma_target_template_poly_mapping.target_seq_id_begin _ma_target_template_poly_mapping.target_seq_id_end 1 1 A 1 138 # # loop_ _ma_alignment_info.alignment_id _ma_alignment_info.data_id _ma_alignment_info.software_group_id _ma_alignment_info.alignment_length _ma_alignment_info.alignment_type _ma_alignment_info.alignment_mode 1 3 1 184 'target-template pairwise alignment' local # # loop_ _ma_alignment_details.ordinal_id _ma_alignment_details.alignment_id _ma_alignment_details.template_segment_id _ma_alignment_details.target_asym_id _ma_alignment_details.score_type _ma_alignment_details.score_type_other_details _ma_alignment_details.score_value _ma_alignment_details.percent_sequence_identity _ma_alignment_details.sequence_identity_denominator _ma_alignment_details.sequence_identity_denominator_other_details 1 1 1 A 'HHblits e-value' . 5.2e-52 57.353 'Number of aligned residue pairs (not including the gaps)' . # # loop_ _ma_alignment.ordinal_id _ma_alignment.alignment_id _ma_alignment.target_template_flag _ma_alignment.sequence 1 1 1 MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKS---EKE-----TT-----SK----------------------------KNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASS-----AASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH 2 1 2 --RKGTSTRKPRINSQLVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDESF # # loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.step_name _ma_protocol_step.details _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2 1 2 2 1 2 'template selection' 'template selection' 'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4 3 1 3 modeling 'homology modeling' 'SWISS-MODEL auto-model mode using ProMod3 on 9dby.1' 4 3 5 # # loop_ _ma_model_list.ordinal_id _ma_model_list.model_id _ma_model_list.model_group_id _ma_model_list.model_name _ma_model_list.model_group_name _ma_model_list.data_id _ma_model_list.model_type _ma_model_list.model_type_other_details 1 1 1 'model 2' . 4 'Homology model' . # # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.auth_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.label_entity_id _atom_site.auth_asym_id _atom_site.auth_comp_id _atom_site.B_iso_or_equiv _atom_site.pdbx_PDB_model_num ATOM 1 N N . ASP 3 3 ? A 157.468 156.904 140.275 1 1 M ASP 0.530 1 ATOM 2 C CA . ASP 3 3 ? A 156.472 157.683 139.455 1 1 M ASP 0.530 1 ATOM 3 C C . ASP 3 3 ? A 155.739 158.679 140.286 1 1 M ASP 0.530 1 ATOM 4 O O . ASP 3 3 ? A 155.415 158.401 141.436 1 1 M ASP 0.530 1 ATOM 5 C CB . ASP 3 3 ? A 155.506 156.687 138.766 1 1 M ASP 0.530 1 ATOM 6 C CG . ASP 3 3 ? A 156.375 155.874 137.817 1 1 M ASP 0.530 1 ATOM 7 O OD1 . ASP 3 3 ? A 157.604 156.158 137.800 1 1 M ASP 0.530 1 ATOM 8 O OD2 . ASP 3 3 ? A 155.859 154.927 137.205 1 1 M ASP 0.530 1 ATOM 9 N N . LYS 4 4 ? A 155.509 159.891 139.735 1 1 M LYS 0.540 1 ATOM 10 C CA . LYS 4 4 ? A 154.657 160.874 140.358 1 1 M LYS 0.540 1 ATOM 11 C C . LYS 4 4 ? A 153.219 160.395 140.422 1 1 M LYS 0.540 1 ATOM 12 O O . LYS 4 4 ? A 152.693 159.809 139.482 1 1 M LYS 0.540 1 ATOM 13 C CB . LYS 4 4 ? A 154.752 162.239 139.624 1 1 M LYS 0.540 1 ATOM 14 C CG . LYS 4 4 ? A 153.589 163.197 139.930 1 1 M LYS 0.540 1 ATOM 15 C CD . LYS 4 4 ? A 153.879 164.682 139.703 1 1 M LYS 0.540 1 ATOM 16 C CE . LYS 4 4 ? A 153.693 165.126 138.253 1 1 M LYS 0.540 1 ATOM 17 N NZ . LYS 4 4 ? A 153.457 166.585 138.230 1 1 M LYS 0.540 1 ATOM 18 N N . LYS 5 5 ? A 152.556 160.640 141.562 1 1 M LYS 0.700 1 ATOM 19 C CA . LYS 5 5 ? A 151.163 160.339 141.716 1 1 M LYS 0.700 1 ATOM 20 C C . LYS 5 5 ? A 150.256 161.503 141.389 1 1 M LYS 0.700 1 ATOM 21 O O . LYS 5 5 ? A 150.654 162.623 141.075 1 1 M LYS 0.700 1 ATOM 22 C CB . LYS 5 5 ? A 150.924 159.858 143.151 1 1 M LYS 0.700 1 ATOM 23 C CG . LYS 5 5 ? A 149.799 158.864 143.408 1 1 M LYS 0.700 1 ATOM 24 C CD . LYS 5 5 ? A 150.077 157.439 142.975 1 1 M LYS 0.700 1 ATOM 25 C CE . LYS 5 5 ? A 148.965 156.606 143.567 1 1 M LYS 0.700 1 ATOM 26 N NZ . LYS 5 5 ? A 149.117 155.235 143.095 1 1 M LYS 0.700 1 ATOM 27 N N . SER 6 6 ? A 148.961 161.179 141.445 1 1 M SER 0.730 1 ATOM 28 C CA . SER 6 6 ? A 147.826 162.037 141.301 1 1 M SER 0.730 1 ATOM 29 C C . SER 6 6 ? A 147.831 163.154 142.364 1 1 M SER 0.730 1 ATOM 30 O O . SER 6 6 ? A 148.554 163.120 143.363 1 1 M SER 0.730 1 ATOM 31 C CB . SER 6 6 ? A 146.496 161.206 141.177 1 1 M SER 0.730 1 ATOM 32 O OG . SER 6 6 ? A 146.079 160.482 142.338 1 1 M SER 0.730 1 ATOM 33 N N . PRO 7 7 ? A 147.092 164.219 142.160 1 1 M PRO 0.910 1 ATOM 34 C CA . PRO 7 7 ? A 146.953 165.262 143.171 1 1 M PRO 0.910 1 ATOM 35 C C . PRO 7 7 ? A 146.313 164.778 144.480 1 1 M PRO 0.910 1 ATOM 36 O O . PRO 7 7 ? A 146.698 165.285 145.533 1 1 M PRO 0.910 1 ATOM 37 C CB . PRO 7 7 ? A 146.146 166.352 142.447 1 1 M PRO 0.910 1 ATOM 38 C CG . PRO 7 7 ? A 146.426 166.156 140.945 1 1 M PRO 0.910 1 ATOM 39 C CD . PRO 7 7 ? A 146.824 164.692 140.805 1 1 M PRO 0.910 1 ATOM 40 N N . THR 8 8 ? A 145.365 163.811 144.408 1 1 M THR 0.910 1 ATOM 41 C CA . THR 8 8 ? A 144.591 163.245 145.518 1 1 M THR 0.910 1 ATOM 42 C C . THR 8 8 ? A 145.257 162.102 146.231 1 1 M THR 0.910 1 ATOM 43 O O . THR 8 8 ? A 145.396 162.110 147.449 1 1 M THR 0.910 1 ATOM 44 C CB . THR 8 8 ? A 143.216 162.727 145.082 1 1 M THR 0.910 1 ATOM 45 O OG1 . THR 8 8 ? A 143.240 162.079 143.810 1 1 M THR 0.910 1 ATOM 46 C CG2 . THR 8 8 ? A 142.307 163.951 144.963 1 1 M THR 0.910 1 ATOM 47 N N . ARG 9 9 ? A 145.710 161.070 145.502 1 1 M ARG 0.760 1 ATOM 48 C CA . ARG 9 9 ? A 146.370 159.940 146.117 1 1 M ARG 0.760 1 ATOM 49 C C . ARG 9 9 ? A 147.863 160.238 146.121 1 1 M ARG 0.760 1 ATOM 50 O O . ARG 9 9 ? A 148.355 160.875 145.241 1 1 M ARG 0.760 1 ATOM 51 C CB . ARG 9 9 ? A 146.027 158.631 145.340 1 1 M ARG 0.760 1 ATOM 52 C CG . ARG 9 9 ? A 144.626 158.062 145.703 1 1 M ARG 0.760 1 ATOM 53 C CD . ARG 9 9 ? A 143.802 157.431 144.562 1 1 M ARG 0.760 1 ATOM 54 N NE . ARG 9 9 ? A 144.479 156.143 144.152 1 1 M ARG 0.760 1 ATOM 55 C CZ . ARG 9 9 ? A 145.128 155.915 143.006 1 1 M ARG 0.760 1 ATOM 56 N NH1 . ARG 9 9 ? A 145.269 156.847 142.075 1 1 M ARG 0.760 1 ATOM 57 N NH2 . ARG 9 9 ? A 145.585 154.684 142.742 1 1 M ARG 0.760 1 ATOM 58 N N . LYS 10 10 ? A 148.616 159.796 147.167 1 1 M LYS 0.730 1 ATOM 59 C CA . LYS 10 10 ? A 150.084 159.799 147.086 1 1 M LYS 0.730 1 ATOM 60 C C . LYS 10 10 ? A 150.671 158.410 146.867 1 1 M LYS 0.730 1 ATOM 61 O O . LYS 10 10 ? A 149.981 157.424 147.138 1 1 M LYS 0.730 1 ATOM 62 C CB . LYS 10 10 ? A 150.721 160.533 148.285 1 1 M LYS 0.730 1 ATOM 63 C CG . LYS 10 10 ? A 150.421 162.048 148.326 1 1 M LYS 0.730 1 ATOM 64 C CD . LYS 10 10 ? A 150.520 162.858 147.012 1 1 M LYS 0.730 1 ATOM 65 C CE . LYS 10 10 ? A 149.468 163.976 146.951 1 1 M LYS 0.730 1 ATOM 66 N NZ . LYS 10 10 ? A 149.788 164.908 145.854 1 1 M LYS 0.730 1 ATOM 67 N N . PRO 11 11 ? A 151.879 158.228 146.279 1 1 M PRO 0.740 1 ATOM 68 C CA . PRO 11 11 ? A 152.394 156.908 146.031 1 1 M PRO 0.740 1 ATOM 69 C C . PRO 11 11 ? A 152.826 156.275 147.324 1 1 M PRO 0.740 1 ATOM 70 O O . PRO 11 11 ? A 153.224 156.949 148.268 1 1 M PRO 0.740 1 ATOM 71 C CB . PRO 11 11 ? A 153.566 157.078 145.046 1 1 M PRO 0.740 1 ATOM 72 C CG . PRO 11 11 ? A 153.928 158.569 145.052 1 1 M PRO 0.740 1 ATOM 73 C CD . PRO 11 11 ? A 152.930 159.219 146.028 1 1 M PRO 0.740 1 ATOM 74 N N . ARG 12 12 ? A 152.674 154.951 147.403 1 1 M ARG 0.660 1 ATOM 75 C CA . ARG 12 12 ? A 152.993 154.219 148.591 1 1 M ARG 0.660 1 ATOM 76 C C . ARG 12 12 ? A 154.451 153.766 148.556 1 1 M ARG 0.660 1 ATOM 77 O O . ARG 12 12 ? A 155.089 153.833 147.511 1 1 M ARG 0.660 1 ATOM 78 C CB . ARG 12 12 ? A 152.027 153.017 148.695 1 1 M ARG 0.660 1 ATOM 79 C CG . ARG 12 12 ? A 150.531 153.419 148.709 1 1 M ARG 0.660 1 ATOM 80 C CD . ARG 12 12 ? A 150.116 154.489 149.740 1 1 M ARG 0.660 1 ATOM 81 N NE . ARG 12 12 ? A 150.433 153.972 151.121 1 1 M ARG 0.660 1 ATOM 82 C CZ . ARG 12 12 ? A 149.648 153.145 151.828 1 1 M ARG 0.660 1 ATOM 83 N NH1 . ARG 12 12 ? A 148.493 152.705 151.341 1 1 M ARG 0.660 1 ATOM 84 N NH2 . ARG 12 12 ? A 150.013 152.755 153.049 1 1 M ARG 0.660 1 ATOM 85 N N . PRO 13 13 ? A 154.996 153.292 149.673 1 1 M PRO 0.640 1 ATOM 86 C CA . PRO 13 13 ? A 156.388 152.872 149.711 1 1 M PRO 0.640 1 ATOM 87 C C . PRO 13 13 ? A 156.554 151.370 149.548 1 1 M PRO 0.640 1 ATOM 88 O O . PRO 13 13 ? A 157.639 150.945 149.153 1 1 M PRO 0.640 1 ATOM 89 C CB . PRO 13 13 ? A 156.867 153.365 151.084 1 1 M PRO 0.640 1 ATOM 90 C CG . PRO 13 13 ? A 155.620 153.416 151.981 1 1 M PRO 0.640 1 ATOM 91 C CD . PRO 13 13 ? A 154.440 153.500 151.015 1 1 M PRO 0.640 1 ATOM 92 N N . VAL 14 14 ? A 155.535 150.529 149.841 1 1 M VAL 0.560 1 ATOM 93 C CA . VAL 14 14 ? A 155.620 149.069 149.740 1 1 M VAL 0.560 1 ATOM 94 C C . VAL 14 14 ? A 155.520 148.610 148.274 1 1 M VAL 0.560 1 ATOM 95 O O . VAL 14 14 ? A 154.546 148.011 147.841 1 1 M VAL 0.560 1 ATOM 96 C CB . VAL 14 14 ? A 154.598 148.338 150.633 1 1 M VAL 0.560 1 ATOM 97 C CG1 . VAL 14 14 ? A 154.880 146.816 150.709 1 1 M VAL 0.560 1 ATOM 98 C CG2 . VAL 14 14 ? A 154.649 148.906 152.069 1 1 M VAL 0.560 1 ATOM 99 N N . SER 15 15 ? A 156.548 148.941 147.463 1 1 M SER 0.540 1 ATOM 100 C CA . SER 15 15 ? A 156.649 148.571 146.056 1 1 M SER 0.540 1 ATOM 101 C C . SER 15 15 ? A 157.957 147.841 145.821 1 1 M SER 0.540 1 ATOM 102 O O . SER 15 15 ? A 157.970 146.734 145.283 1 1 M SER 0.540 1 ATOM 103 C CB . SER 15 15 ? A 156.537 149.853 145.162 1 1 M SER 0.540 1 ATOM 104 O OG . SER 15 15 ? A 156.890 149.667 143.787 1 1 M SER 0.540 1 ATOM 105 N N . GLN 16 16 ? A 159.094 148.404 146.269 1 1 M GLN 0.620 1 ATOM 106 C CA . GLN 16 16 ? A 160.410 147.857 146.009 1 1 M GLN 0.620 1 ATOM 107 C C . GLN 16 16 ? A 161.216 147.950 147.288 1 1 M GLN 0.620 1 ATOM 108 O O . GLN 16 16 ? A 160.707 148.332 148.338 1 1 M GLN 0.620 1 ATOM 109 C CB . GLN 16 16 ? A 161.146 148.607 144.857 1 1 M GLN 0.620 1 ATOM 110 C CG . GLN 16 16 ? A 160.425 148.556 143.484 1 1 M GLN 0.620 1 ATOM 111 C CD . GLN 16 16 ? A 160.354 147.135 142.925 1 1 M GLN 0.620 1 ATOM 112 O OE1 . GLN 16 16 ? A 161.250 146.308 143.116 1 1 M GLN 0.620 1 ATOM 113 N NE2 . GLN 16 16 ? A 159.267 146.820 142.190 1 1 M GLN 0.620 1 ATOM 114 N N . LEU 17 17 ? A 162.500 147.567 147.222 1 1 M LEU 0.240 1 ATOM 115 C CA . LEU 17 17 ? A 163.415 147.577 148.336 1 1 M LEU 0.240 1 ATOM 116 C C . LEU 17 17 ? A 164.562 148.528 147.952 1 1 M LEU 0.240 1 ATOM 117 O O . LEU 17 17 ? A 164.523 149.190 146.928 1 1 M LEU 0.240 1 ATOM 118 C CB . LEU 17 17 ? A 163.817 146.094 148.645 1 1 M LEU 0.240 1 ATOM 119 C CG . LEU 17 17 ? A 164.746 145.827 149.858 1 1 M LEU 0.240 1 ATOM 120 C CD1 . LEU 17 17 ? A 164.212 146.437 151.171 1 1 M LEU 0.240 1 ATOM 121 C CD2 . LEU 17 17 ? A 165.145 144.342 150.016 1 1 M LEU 0.240 1 ATOM 122 N N . VAL 18 18 ? A 165.575 148.651 148.840 1 1 M VAL 0.630 1 ATOM 123 C CA . VAL 18 18 ? A 166.869 149.295 148.656 1 1 M VAL 0.630 1 ATOM 124 C C . VAL 18 18 ? A 167.704 148.751 147.495 1 1 M VAL 0.630 1 ATOM 125 O O . VAL 18 18 ? A 168.420 149.517 146.845 1 1 M VAL 0.630 1 ATOM 126 C CB . VAL 18 18 ? A 167.711 149.240 149.953 1 1 M VAL 0.630 1 ATOM 127 C CG1 . VAL 18 18 ? A 167.067 150.137 151.032 1 1 M VAL 0.630 1 ATOM 128 C CG2 . VAL 18 18 ? A 167.923 147.815 150.531 1 1 M VAL 0.630 1 ATOM 129 N N . ALA 19 19 ? A 167.638 147.438 147.215 1 1 M ALA 0.750 1 ATOM 130 C CA . ALA 19 19 ? A 168.296 146.798 146.107 1 1 M ALA 0.750 1 ATOM 131 C C . ALA 19 19 ? A 167.293 145.825 145.437 1 1 M ALA 0.750 1 ATOM 132 O O . ALA 19 19 ? A 166.177 145.634 146.000 1 1 M ALA 0.750 1 ATOM 133 C CB . ALA 19 19 ? A 169.515 145.990 146.596 1 1 M ALA 0.750 1 ATOM 134 O OXT . ALA 19 19 ? A 167.651 145.250 144.374 1 1 M ALA 0.750 1 # # loop_ _atom_type.symbol C N O # # loop_ _ma_qa_metric.id _ma_qa_metric.name _ma_qa_metric.description _ma_qa_metric.type _ma_qa_metric.mode _ma_qa_metric.type_other_details _ma_qa_metric.software_group_id 1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' local . 5 2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' global . 5 3 GMQE 'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.' 'normalized score' global . 6 # # loop_ _ma_qa_metric_global.ordinal_id _ma_qa_metric_global.model_id _ma_qa_metric_global.metric_id _ma_qa_metric_global.metric_value 1 1 2 0.658 2 1 3 0.113 # # loop_ _ma_qa_metric_local.ordinal_id _ma_qa_metric_local.model_id _ma_qa_metric_local.label_asym_id _ma_qa_metric_local.label_seq_id _ma_qa_metric_local.label_comp_id _ma_qa_metric_local.metric_id _ma_qa_metric_local.metric_value 1 1 A 3 ASP 1 0.530 2 1 A 4 LYS 1 0.540 3 1 A 5 LYS 1 0.700 4 1 A 6 SER 1 0.730 5 1 A 7 PRO 1 0.910 6 1 A 8 THR 1 0.910 7 1 A 9 ARG 1 0.760 8 1 A 10 LYS 1 0.730 9 1 A 11 PRO 1 0.740 10 1 A 12 ARG 1 0.660 11 1 A 13 PRO 1 0.640 12 1 A 14 VAL 1 0.560 13 1 A 15 SER 1 0.540 14 1 A 16 GLN 1 0.620 15 1 A 17 LEU 1 0.240 16 1 A 18 VAL 1 0.630 17 1 A 19 ALA 1 0.750 # # loop_ _pdbx_data_usage.id _pdbx_data_usage.type _pdbx_data_usage.details _pdbx_data_usage.url 1 license ;This SWISS-MODEL protein model is copyright. 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