data_SMR-09cf825173dec4d9215d3235ec47f1cb_3
_entry.id SMR-09cf825173dec4d9215d3235ec47f1cb_3
_struct.entry_id SMR-09cf825173dec4d9215d3235ec47f1cb_3
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - A1L1K4/ C42S2_RAT, CDC42 small effector protein 2

Estimated model accuracy of this model is 0.038, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries A1L1K4'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service'
3ef406dae3f6eb8b74980f2a6e69a2109acde4aa package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 10581.643 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP C42S2_RAT A1L1K4 1
;MSEFWLCFNCCIAEQPQPRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGMP
ANVQMQLVDTKAG
;
'CDC42 small effector protein 2'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 83 1 83
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . C42S2_RAT A1L1K4 . 1 83 10116 'Rattus norvegicus (Rat)' 2009-09-22
62E606333D90EEEA
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A
;MSEFWLCFNCCIAEQPQPRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGMP
ANVQMQLVDTKAG
;

;MSEFWLCFNCCIAEQPQPRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGMP
ANVQMQLVDTKAG
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 SER .
1 3 GLU .
1 4 PHE .
1 5 TRP .
1 6 LEU .
1 7 CYS .
1 8 PHE .
1 9 ASN .
1 10 CYS .
1 11 CYS .
1 12 ILE .
1 13 ALA .
1 14 GLU .
1 15 GLN .
1 16 PRO .
1 17 GLN .
1 18 PRO .
1 19 ARG .
1 20 ARG .
1 21 ARG .
1 22 ARG .
1 23 ILE .
1 24 ASP .
1 25 ARG .
1 26 SER .
1 27 MET .
1 28 ILE .
1 29 GLY .
1 30 GLU .
1 31 PRO .
1 32 THR .
1 33 ASN .
1 34 PHE .
1 35 VAL .
1 36 HIS .
1 37 THR .
1 38 ALA .
1 39 HIS .
1 40 VAL .
1 41 GLY .
1 42 SER .
1 43 GLY .
1 44 ASP .
1 45 LEU .
1 46 PHE .
1 47 SER .
1 48 GLY .
1 49 MET .
1 50 ASN .
1 51 SER .
1 52 VAL .
1 53 SER .
1 54 SER .
1 55 ILE .
1 56 GLN .
1 57 ASN .
1 58 GLN .
1 59 MET .
1 60 GLN .
1 61 SER .
1 62 LYS .
1 63 GLY .
1 64 GLY .
1 65 TYR .
1 66 GLY .
1 67 GLY .
1 68 GLY .
1 69 MET .
1 70 PRO .
1 71 ALA .
1 72 ASN .
1 73 VAL .
1 74 GLN .
1 75 MET .
1 76 GLN .
1 77 LEU .
1 78 VAL .
1 79 ASP .
1 80 THR .
1 81 LYS .
1 82 ALA .
1 83 GLY .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? A .
A 1 2 SER 2 ? ? ? A .
A 1 3 GLU 3 ? ? ? A .
A 1 4 PHE 4 ? ? ? A .
A 1 5 TRP 5 ? ? ? A .
A 1 6 LEU 6 6 LEU LEU A .
A 1 7 CYS 7 7 CYS CYS A .
A 1 8 PHE 8 8 PHE PHE A .
A 1 9 ASN 9 9 ASN ASN A .
A 1 10 CYS 10 10 CYS CYS A .
A 1 11 CYS 11 11 CYS CYS A .
A 1 12 ILE 12 12 ILE ILE A .
A 1 13 ALA 13 13 ALA ALA A .
A 1 14 GLU 14 14 GLU GLU A .
A 1 15 GLN 15 15 GLN GLN A .
A 1 16 PRO 16 16 PRO PRO A .
A 1 17 GLN 17 17 GLN GLN A .
A 1 18 PRO 18 18 PRO PRO A .
A 1 19 ARG 19 19 ARG ARG A .
A 1 20 ARG 20 20 ARG ARG A .
A 1 21 ARG 21 ? ? ? A .
A 1 22 ARG 22 ? ? ? A .
A 1 23 ILE 23 ? ? ? A .
A 1 24 ASP 24 ? ? ? A .
A 1 25 ARG 25 ? ? ? A .
A 1 26 SER 26 ? ? ? A .
A 1 27 MET 27 ? ? ? A .
A 1 28 ILE 28 ? ? ? A .
A 1 29 GLY 29 ? ? ? A .
A 1 30 GLU 30 ? ? ? A .
A 1 31 PRO 31 ? ? ? A .
A 1 32 THR 32 ? ? ? A .
A 1 33 ASN 33 ? ? ? A .
A 1 34 PHE 34 ? ? ? A .
A 1 35 VAL 35 ? ? ? A .
A 1 36 HIS 36 ? ? ? A .
A 1 37 THR 37 ? ? ? A .
A 1 38 ALA 38 ? ? ? A .
A 1 39 HIS 39 ? ? ? A .
A 1 40 VAL 40 ? ? ? A .
A 1 41 GLY 41 ? ? ? A .
A 1 42 SER 42 ? ? ? A .
A 1 43 GLY 43 ? ? ? A .
A 1 44 ASP 44 ? ? ? A .
A 1 45 LEU 45 ? ? ? A .
A 1 46 PHE 46 ? ? ? A .
A 1 47 SER 47 ? ? ? A .
A 1 48 GLY 48 ? ? ? A .
A 1 49 MET 49 ? ? ? A .
A 1 50 ASN 50 ? ? ? A .
A 1 51 SER 51 ? ? ? A .
A 1 52 VAL 52 ? ? ? A .
A 1 53 SER 53 ? ? ? A .
A 1 54 SER 54 ? ? ? A .
A 1 55 ILE 55 ? ? ? A .
A 1 56 GLN 56 ? ? ? A .
A 1 57 ASN 57 ? ? ? A .
A 1 58 GLN 58 ? ? ? A .
A 1 59 MET 59 ? ? ? A .
A 1 60 GLN 60 ? ? ? A .
A 1 61 SER 61 ? ? ? A .
A 1 62 LYS 62 ? ? ? A .
A 1 63 GLY 63 ? ? ? A .
A 1 64 GLY 64 ? ? ? A .
A 1 65 TYR 65 ? ? ? A .
A 1 66 GLY 66 ? ? ? A .
A 1 67 GLY 67 ? ? ? A .
A 1 68 GLY 68 ? ? ? A .
A 1 69 MET 69 ? ? ? A .
A 1 70 PRO 70 ? ? ? A .
A 1 71 ALA 71 ? ? ? A .
A 1 72 ASN 72 ? ? ? A .
A 1 73 VAL 73 ? ? ? A .
A 1 74 GLN 74 ? ? ? A .
A 1 75 MET 75 ? ? ? A .
A 1 76 GLN 76 ? ? ? A .
A 1 77 LEU 77 ? ? ? A .
A 1 78 VAL 78 ? ? ? A .
A 1 79 ASP 79 ? ? ? A .
A 1 80 THR 80 ? ? ? A .
A 1 81 LYS 81 ? ? ? A .
A 1 82 ALA 82 ? ? ? A .
A 1 83 GLY 83 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Sigma factor-binding protein Crl {PDB ID=2mz8, label_asym_id=A, auth_asym_id=A, SMTL ID=2mz8.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 2mz8, label_asym_id=A'
'target-template alignment' .
4 'model 3' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2025-01-29
6 PDB https://www.wwpdb.org . 2025-01-24
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1
;HHHHHHSSGTGSGENLYFQGHMTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNVKPAPE
KREFWGWWMELEAQEKRFTYRYQFGLFDKEGNWTVVPINETEVVERLEYTLREFHEKLRDLLISMELALE
PSDDFNDEPVKLSA
;

;HHHHHHSSGTGSGENLYFQGHMTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNVKPAPE
KREFWGWWMELEAQEKRFTYRYQFGLFDKEGNWTVVPINETEVVERLEYTLREFHEKLRDLLISMELALE
PSDDFNDEPVKLSA
;

#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 57 71
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 2mz8 2024-05-15
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 83
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 83 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 31.000 26.667
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MSEFWLCFNCCIAEQPQPRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGMPANVQMQLVDTKAG
2 1 2
-----DCLAVCVNVKPAPEK---------------------------------------------------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 2mz8.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 3' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . LEU 6 6 ? A 18.734 7.240 5.250 1 1 A LEU 0.480 1
ATOM 2 C CA . LEU 6 6 ? A 19.697 8.368 5.508 1 1 A LEU 0.480 1
ATOM 3 C C . LEU 6 6 ? A 20.552 8.008 6.716 1 1 A LEU 0.480 1
ATOM 4 O O . LEU 6 6 ? A 19.984 7.712 7.761 1 1 A LEU 0.480 1
ATOM 5 C CB . LEU 6 6 ? A 18.878 9.665 5.771 1 1 A LEU 0.480 1
ATOM 6 C CG . LEU 6 6 ? A 19.708 10.945 6.014 1 1 A LEU 0.480 1
ATOM 7 C CD1 . LEU 6 6 ? A 20.563 11.333 4.799 1 1 A LEU 0.480 1
ATOM 8 C CD2 . LEU 6 6 ? A 18.788 12.112 6.412 1 1 A LEU 0.480 1
ATOM 9 N N . CYS 7 7 ? A 21.901 7.964 6.610 1 1 A CYS 0.500 1
ATOM 10 C CA . CYS 7 7 ? A 22.770 7.610 7.724 1 1 A CYS 0.500 1
ATOM 11 C C . CYS 7 7 ? A 23.608 8.838 8.032 1 1 A CYS 0.500 1
ATOM 12 O O . CYS 7 7 ? A 23.936 9.602 7.124 1 1 A CYS 0.500 1
ATOM 13 C CB . CYS 7 7 ? A 23.697 6.399 7.402 1 1 A CYS 0.500 1
ATOM 14 S SG . CYS 7 7 ? A 24.377 5.575 8.881 1 1 A CYS 0.500 1
ATOM 15 N N . PHE 8 8 ? A 23.945 9.061 9.314 1 1 A PHE 0.640 1
ATOM 16 C CA . PHE 8 8 ? A 24.673 10.218 9.789 1 1 A PHE 0.640 1
ATOM 17 C C . PHE 8 8 ? A 26.004 9.720 10.315 1 1 A PHE 0.640 1
ATOM 18 O O . PHE 8 8 ? A 26.045 8.942 11.264 1 1 A PHE 0.640 1
ATOM 19 C CB . PHE 8 8 ? A 23.936 10.933 10.952 1 1 A PHE 0.640 1
ATOM 20 C CG . PHE 8 8 ? A 22.661 11.554 10.469 1 1 A PHE 0.640 1
ATOM 21 C CD1 . PHE 8 8 ? A 22.662 12.877 10.009 1 1 A PHE 0.640 1
ATOM 22 C CD2 . PHE 8 8 ? A 21.453 10.837 10.470 1 1 A PHE 0.640 1
ATOM 23 C CE1 . PHE 8 8 ? A 21.478 13.484 9.574 1 1 A PHE 0.640 1
ATOM 24 C CE2 . PHE 8 8 ? A 20.268 11.438 10.026 1 1 A PHE 0.640 1
ATOM 25 C CZ . PHE 8 8 ? A 20.279 12.766 9.590 1 1 A PHE 0.640 1
ATOM 26 N N . ASN 9 9 ? A 27.115 10.162 9.685 1 1 A ASN 0.690 1
ATOM 27 C CA . ASN 9 9 ? A 28.470 9.783 10.057 1 1 A ASN 0.690 1
ATOM 28 C C . ASN 9 9 ? A 29.161 10.905 10.823 1 1 A ASN 0.690 1
ATOM 29 O O . ASN 9 9 ? A 29.458 10.782 12.005 1 1 A ASN 0.690 1
ATOM 30 C CB . ASN 9 9 ? A 29.320 9.442 8.801 1 1 A ASN 0.690 1
ATOM 31 C CG . ASN 9 9 ? A 28.816 8.162 8.139 1 1 A ASN 0.690 1
ATOM 32 O OD1 . ASN 9 9 ? A 28.228 7.286 8.757 1 1 A ASN 0.690 1
ATOM 33 N ND2 . ASN 9 9 ? A 29.084 8.024 6.815 1 1 A ASN 0.690 1
ATOM 34 N N . CYS 10 10 ? A 29.431 12.053 10.167 1 1 A CYS 0.470 1
ATOM 35 C CA . CYS 10 10 ? A 30.062 13.184 10.815 1 1 A CYS 0.470 1
ATOM 36 C C . CYS 10 10 ? A 29.389 14.416 10.251 1 1 A CYS 0.470 1
ATOM 37 O O . CYS 10 10 ? A 29.047 14.466 9.069 1 1 A CYS 0.470 1
ATOM 38 C CB . CYS 10 10 ? A 31.608 13.215 10.595 1 1 A CYS 0.470 1
ATOM 39 S SG . CYS 10 10 ? A 32.513 14.460 11.580 1 1 A CYS 0.470 1
ATOM 40 N N . CYS 11 11 ? A 29.112 15.401 11.125 1 1 A CYS 0.500 1
ATOM 41 C CA . CYS 11 11 ? A 28.550 16.699 10.798 1 1 A CYS 0.500 1
ATOM 42 C C . CYS 11 11 ? A 29.611 17.583 10.137 1 1 A CYS 0.500 1
ATOM 43 O O . CYS 11 11 ? A 30.797 17.449 10.415 1 1 A CYS 0.500 1
ATOM 44 C CB . CYS 11 11 ? A 27.978 17.386 12.075 1 1 A CYS 0.500 1
ATOM 45 S SG . CYS 11 11 ? A 26.792 16.340 12.988 1 1 A CYS 0.500 1
ATOM 46 N N . ILE 12 12 ? A 29.225 18.504 9.224 1 1 A ILE 0.520 1
ATOM 47 C CA . ILE 12 12 ? A 30.148 19.424 8.549 1 1 A ILE 0.520 1
ATOM 48 C C . ILE 12 12 ? A 30.841 20.401 9.494 1 1 A ILE 0.520 1
ATOM 49 O O . ILE 12 12 ? A 32.036 20.668 9.390 1 1 A ILE 0.520 1
ATOM 50 C CB . ILE 12 12 ? A 29.407 20.215 7.466 1 1 A ILE 0.520 1
ATOM 51 C CG1 . ILE 12 12 ? A 28.909 19.275 6.341 1 1 A ILE 0.520 1
ATOM 52 C CG2 . ILE 12 12 ? A 30.278 21.356 6.878 1 1 A ILE 0.520 1
ATOM 53 C CD1 . ILE 12 12 ? A 27.903 19.945 5.396 1 1 A ILE 0.520 1
ATOM 54 N N . ALA 13 13 ? A 30.081 20.971 10.444 1 1 A ALA 0.560 1
ATOM 55 C CA . ALA 13 13 ? A 30.584 21.935 11.379 1 1 A ALA 0.560 1
ATOM 56 C C . ALA 13 13 ? A 29.927 21.665 12.722 1 1 A ALA 0.560 1
ATOM 57 O O . ALA 13 13 ? A 28.897 20.996 12.791 1 1 A ALA 0.560 1
ATOM 58 C CB . ALA 13 13 ? A 30.258 23.356 10.871 1 1 A ALA 0.560 1
ATOM 59 N N . GLU 14 14 ? A 30.548 22.175 13.810 1 1 A GLU 0.600 1
ATOM 60 C CA . GLU 14 14 ? A 30.100 22.003 15.186 1 1 A GLU 0.600 1
ATOM 61 C C . GLU 14 14 ? A 29.849 23.325 15.915 1 1 A GLU 0.600 1
ATOM 62 O O . GLU 14 14 ? A 29.074 23.406 16.860 1 1 A GLU 0.600 1
ATOM 63 C CB . GLU 14 14 ? A 31.212 21.303 15.986 1 1 A GLU 0.600 1
ATOM 64 C CG . GLU 14 14 ? A 31.575 19.882 15.502 1 1 A GLU 0.600 1
ATOM 65 C CD . GLU 14 14 ? A 32.654 19.259 16.391 1 1 A GLU 0.600 1
ATOM 66 O OE1 . GLU 14 14 ? A 33.076 18.121 16.070 1 1 A GLU 0.600 1
ATOM 67 O OE2 . GLU 14 14 ? A 33.064 19.914 17.384 1 1 A GLU 0.600 1
ATOM 68 N N . GLN 15 15 ? A 30.502 24.422 15.480 1 1 A GLN 0.730 1
ATOM 69 C CA . GLN 15 15 ? A 30.169 25.773 15.912 1 1 A GLN 0.730 1
ATOM 70 C C . GLN 15 15 ? A 28.751 26.274 15.568 1 1 A GLN 0.730 1
ATOM 71 O O . GLN 15 15 ? A 28.165 26.941 16.426 1 1 A GLN 0.730 1
ATOM 72 C CB . GLN 15 15 ? A 31.212 26.792 15.392 1 1 A GLN 0.730 1
ATOM 73 C CG . GLN 15 15 ? A 30.940 28.267 15.791 1 1 A GLN 0.730 1
ATOM 74 C CD . GLN 15 15 ? A 31.756 29.258 14.959 1 1 A GLN 0.730 1
ATOM 75 O OE1 . GLN 15 15 ? A 32.070 29.023 13.798 1 1 A GLN 0.730 1
ATOM 76 N NE2 . GLN 15 15 ? A 32.063 30.435 15.561 1 1 A GLN 0.730 1
ATOM 77 N N . PRO 16 16 ? A 28.130 26.071 14.396 1 1 A PRO 0.640 1
ATOM 78 C CA . PRO 16 16 ? A 26.727 26.405 14.198 1 1 A PRO 0.640 1
ATOM 79 C C . PRO 16 16 ? A 25.830 25.315 14.759 1 1 A PRO 0.640 1
ATOM 80 O O . PRO 16 16 ? A 26.286 24.406 15.441 1 1 A PRO 0.640 1
ATOM 81 C CB . PRO 16 16 ? A 26.594 26.552 12.671 1 1 A PRO 0.640 1
ATOM 82 C CG . PRO 16 16 ? A 27.654 25.609 12.117 1 1 A PRO 0.640 1
ATOM 83 C CD . PRO 16 16 ? A 28.789 25.774 13.125 1 1 A PRO 0.640 1
ATOM 84 N N . GLN 17 17 ? A 24.517 25.409 14.491 1 1 A GLN 0.630 1
ATOM 85 C CA . GLN 17 17 ? A 23.519 24.484 14.979 1 1 A GLN 0.630 1
ATOM 86 C C . GLN 17 17 ? A 23.463 23.226 14.115 1 1 A GLN 0.630 1
ATOM 87 O O . GLN 17 17 ? A 23.970 23.265 13.002 1 1 A GLN 0.630 1
ATOM 88 C CB . GLN 17 17 ? A 22.142 25.187 14.922 1 1 A GLN 0.630 1
ATOM 89 C CG . GLN 17 17 ? A 22.019 26.424 15.835 1 1 A GLN 0.630 1
ATOM 90 C CD . GLN 17 17 ? A 22.236 25.991 17.281 1 1 A GLN 0.630 1
ATOM 91 O OE1 . GLN 17 17 ? A 21.555 25.085 17.746 1 1 A GLN 0.630 1
ATOM 92 N NE2 . GLN 17 17 ? A 23.198 26.619 17.999 1 1 A GLN 0.630 1
ATOM 93 N N . PRO 18 18 ? A 22.855 22.116 14.533 1 1 A PRO 0.580 1
ATOM 94 C CA . PRO 18 18 ? A 22.926 20.851 13.793 1 1 A PRO 0.580 1
ATOM 95 C C . PRO 18 18 ? A 21.957 20.773 12.627 1 1 A PRO 0.580 1
ATOM 96 O O . PRO 18 18 ? A 22.198 20.026 11.687 1 1 A PRO 0.580 1
ATOM 97 C CB . PRO 18 18 ? A 22.526 19.795 14.841 1 1 A PRO 0.580 1
ATOM 98 C CG . PRO 18 18 ? A 21.717 20.574 15.881 1 1 A PRO 0.580 1
ATOM 99 C CD . PRO 18 18 ? A 22.433 21.914 15.917 1 1 A PRO 0.580 1
ATOM 100 N N . ARG 19 19 ? A 20.817 21.481 12.727 1 1 A ARG 0.400 1
ATOM 101 C CA . ARG 19 19 ? A 19.795 21.568 11.699 1 1 A ARG 0.400 1
ATOM 102 C C . ARG 19 19 ? A 20.025 22.720 10.723 1 1 A ARG 0.400 1
ATOM 103 O O . ARG 19 19 ? A 19.288 22.855 9.750 1 1 A ARG 0.400 1
ATOM 104 C CB . ARG 19 19 ? A 18.415 21.868 12.348 1 1 A ARG 0.400 1
ATOM 105 C CG . ARG 19 19 ? A 17.804 20.743 13.205 1 1 A ARG 0.400 1
ATOM 106 C CD . ARG 19 19 ? A 16.450 21.162 13.789 1 1 A ARG 0.400 1
ATOM 107 N NE . ARG 19 19 ? A 15.916 20.015 14.598 1 1 A ARG 0.400 1
ATOM 108 C CZ . ARG 19 19 ? A 14.798 20.082 15.336 1 1 A ARG 0.400 1
ATOM 109 N NH1 . ARG 19 19 ? A 14.085 21.202 15.405 1 1 A ARG 0.400 1
ATOM 110 N NH2 . ARG 19 19 ? A 14.373 19.018 16.016 1 1 A ARG 0.400 1
ATOM 111 N N . ARG 20 20 ? A 21.016 23.582 11.012 1 1 A ARG 0.800 1
ATOM 112 C CA . ARG 20 20 ? A 21.431 24.686 10.168 1 1 A ARG 0.800 1
ATOM 113 C C . ARG 20 20 ? A 22.692 24.302 9.353 1 1 A ARG 0.800 1
ATOM 114 O O . ARG 20 20 ? A 23.182 23.153 9.497 1 1 A ARG 0.800 1
ATOM 115 C CB . ARG 20 20 ? A 21.865 25.910 11.016 1 1 A ARG 0.800 1
ATOM 116 C CG . ARG 20 20 ? A 20.731 26.640 11.755 1 1 A ARG 0.800 1
ATOM 117 C CD . ARG 20 20 ? A 21.234 27.878 12.504 1 1 A ARG 0.800 1
ATOM 118 N NE . ARG 20 20 ? A 20.097 28.410 13.336 1 1 A ARG 0.800 1
ATOM 119 C CZ . ARG 20 20 ? A 20.220 29.364 14.272 1 1 A ARG 0.800 1
ATOM 120 N NH1 . ARG 20 20 ? A 21.413 29.858 14.590 1 1 A ARG 0.800 1
ATOM 121 N NH2 . ARG 20 20 ? A 19.147 29.848 14.897 1 1 A ARG 0.800 1
ATOM 122 O OXT . ARG 20 20 ? A 23.203 25.194 8.620 1 1 A ARG 0.800 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.583
2 1 3 0.038
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 6 LEU 1 0.480
2 1 A 7 CYS 1 0.500
3 1 A 8 PHE 1 0.640
4 1 A 9 ASN 1 0.690
5 1 A 10 CYS 1 0.470
6 1 A 11 CYS 1 0.500
7 1 A 12 ILE 1 0.520
8 1 A 13 ALA 1 0.560
9 1 A 14 GLU 1 0.600
10 1 A 15 GLN 1 0.730
11 1 A 16 PRO 1 0.640
12 1 A 17 GLN 1 0.630
13 1 A 18 PRO 1 0.580
14 1 A 19 ARG 1 0.400
15 1 A 20 ARG 1 0.800
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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