data_SMR-3520c68e38869981e9d65a46a19233ed_2
_entry.id SMR-3520c68e38869981e9d65a46a19233ed_2
_struct.entry_id SMR-3520c68e38869981e9d65a46a19233ed_2
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - Q6PDI6 (isoform 2)/ MINY2_MOUSE, Ubiquitin carboxyl-terminal hydrolase MINDY-2

Estimated model accuracy of this model is 0.035, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries Q6PDI6 (isoform 2)'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service'
2512d1755cebc94443edf017bed62a02253bd792 package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.2.31 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 44881.761 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP MINY2_MOUSE Q6PDI6 1
;MMEIITAEQLMEYLGDYMLEAKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPEC
IVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSQLVSEGFVAEQFLNNTATQLTY
HGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKIVWESLHNVDGDGNFCDSEFHL
RPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQE
QAQAVVTTTTPSTQAQQGQPAQASPSSIKQPGNSERKRKEPREKDKEKEKEKNSCVIL
;
'Ubiquitin carboxyl-terminal hydrolase MINDY-2'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 338 1 338
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . MINY2_MOUSE Q6PDI6 Q6PDI6-2 1 338 10090 'Mus musculus (Mouse)'
2004-07-05 D8784CD2BA038896
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no C
;MMEIITAEQLMEYLGDYMLEAKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPEC
IVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSQLVSEGFVAEQFLNNTATQLTY
HGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKIVWESLHNVDGDGNFCDSEFHL
RPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQE
QAQAVVTTTTPSTQAQQGQPAQASPSSIKQPGNSERKRKEPREKDKEKEKEKNSCVIL
;

;MMEIITAEQLMEYLGDYMLEAKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPEC
IVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSQLVSEGFVAEQFLNNTATQLTY
HGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKIVWESLHNVDGDGNFCDSEFHL
RPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQE
QAQAVVTTTTPSTQAQQGQPAQASPSSIKQPGNSERKRKEPREKDKEKEKEKNSCVIL
;

#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 MET .
1 3 GLU .
1 4 ILE .
1 5 ILE .
1 6 THR .
1 7 ALA .
1 8 GLU .
1 9 GLN .
1 10 LEU .
1 11 MET .
1 12 GLU .
1 13 TYR .
1 14 LEU .
1 15 GLY .
1 16 ASP .
1 17 TYR .
1 18 MET .
1 19 LEU .
1 20 GLU .
1 21 ALA .
1 22 LYS .
1 23 PRO .
1 24 LYS .
1 25 GLU .
1 26 ILE .
1 27 SER .
1 28 GLU .
1 29 ILE .
1 30 GLN .
1 31 ARG .
1 32 VAL .
1 33 ASN .
1 34 TYR .
1 35 GLU .
1 36 GLN .
1 37 ASN .
1 38 MET .
1 39 SER .
1 40 ASP .
1 41 ALA .
1 42 MET .
1 43 ALA .
1 44 ILE .
1 45 LEU .
1 46 HIS .
1 47 LYS .
1 48 LEU .
1 49 GLN .
1 50 THR .
1 51 GLY .
1 52 LEU .
1 53 ASP .
1 54 VAL .
1 55 ASN .
1 56 VAL .
1 57 ARG .
1 58 PHE .
1 59 THR .
1 60 GLY .
1 61 VAL .
1 62 ARG .
1 63 VAL .
1 64 PHE .
1 65 GLU .
1 66 TYR .
1 67 THR .
1 68 PRO .
1 69 GLU .
1 70 CYS .
1 71 ILE .
1 72 VAL .
1 73 PHE .
1 74 ASP .
1 75 LEU .
1 76 LEU .
1 77 ASP .
1 78 ILE .
1 79 PRO .
1 80 LEU .
1 81 TYR .
1 82 HIS .
1 83 GLY .
1 84 TRP .
1 85 LEU .
1 86 VAL .
1 87 ASP .
1 88 PRO .
1 89 GLN .
1 90 ILE .
1 91 ASP .
1 92 ASP .
1 93 ILE .
1 94 VAL .
1 95 LYS .
1 96 ALA .
1 97 VAL .
1 98 GLY .
1 99 ASN .
1 100 CYS .
1 101 SER .
1 102 TYR .
1 103 ASN .
1 104 GLN .
1 105 LEU .
1 106 VAL .
1 107 GLU .
1 108 LYS .
1 109 ILE .
1 110 ILE .
1 111 SER .
1 112 CYS .
1 113 LYS .
1 114 GLN .
1 115 SER .
1 116 ASP .
1 117 ASN .
1 118 SER .
1 119 GLN .
1 120 LEU .
1 121 VAL .
1 122 SER .
1 123 GLU .
1 124 GLY .
1 125 PHE .
1 126 VAL .
1 127 ALA .
1 128 GLU .
1 129 GLN .
1 130 PHE .
1 131 LEU .
1 132 ASN .
1 133 ASN .
1 134 THR .
1 135 ALA .
1 136 THR .
1 137 GLN .
1 138 LEU .
1 139 THR .
1 140 TYR .
1 141 HIS .
1 142 GLY .
1 143 LEU .
1 144 CYS .
1 145 GLU .
1 146 LEU .
1 147 THR .
1 148 SER .
1 149 THR .
1 150 VAL .
1 151 GLN .
1 152 GLU .
1 153 GLY .
1 154 GLU .
1 155 LEU .
1 156 CYS .
1 157 VAL .
1 158 PHE .
1 159 PHE .
1 160 ARG .
1 161 ASN .
1 162 ASN .
1 163 HIS .
1 164 PHE .
1 165 SER .
1 166 THR .
1 167 MET .
1 168 THR .
1 169 LYS .
1 170 TYR .
1 171 LYS .
1 172 GLY .
1 173 GLN .
1 174 LEU .
1 175 TYR .
1 176 LEU .
1 177 LEU .
1 178 VAL .
1 179 THR .
1 180 ASP .
1 181 GLN .
1 182 GLY .
1 183 PHE .
1 184 LEU .
1 185 THR .
1 186 GLU .
1 187 GLU .
1 188 LYS .
1 189 ILE .
1 190 VAL .
1 191 TRP .
1 192 GLU .
1 193 SER .
1 194 LEU .
1 195 HIS .
1 196 ASN .
1 197 VAL .
1 198 ASP .
1 199 GLY .
1 200 ASP .
1 201 GLY .
1 202 ASN .
1 203 PHE .
1 204 CYS .
1 205 ASP .
1 206 SER .
1 207 GLU .
1 208 PHE .
1 209 HIS .
1 210 LEU .
1 211 ARG .
1 212 PRO .
1 213 PRO .
1 214 SER .
1 215 ASP .
1 216 PRO .
1 217 GLU .
1 218 THR .
1 219 VAL .
1 220 TYR .
1 221 LYS .
1 222 GLY .
1 223 GLN .
1 224 GLN .
1 225 ASP .
1 226 GLN .
1 227 ILE .
1 228 ASP .
1 229 GLN .
1 230 ASP .
1 231 TYR .
1 232 LEU .
1 233 MET .
1 234 ALA .
1 235 LEU .
1 236 SER .
1 237 LEU .
1 238 GLN .
1 239 GLN .
1 240 GLU .
1 241 GLN .
1 242 GLN .
1 243 SER .
1 244 GLN .
1 245 GLU .
1 246 ILE .
1 247 ASN .
1 248 TRP .
1 249 GLU .
1 250 GLN .
1 251 ILE .
1 252 PRO .
1 253 GLU .
1 254 GLY .
1 255 ILE .
1 256 SER .
1 257 ASP .
1 258 LEU .
1 259 GLU .
1 260 LEU .
1 261 ALA .
1 262 LYS .
1 263 LYS .
1 264 LEU .
1 265 GLN .
1 266 GLU .
1 267 GLU .
1 268 GLU .
1 269 ASP .
1 270 ARG .
1 271 ARG .
1 272 ALA .
1 273 SER .
1 274 GLN .
1 275 TYR .
1 276 TYR .
1 277 GLN .
1 278 GLU .
1 279 GLN .
1 280 GLU .
1 281 GLN .
1 282 ALA .
1 283 GLN .
1 284 ALA .
1 285 VAL .
1 286 VAL .
1 287 THR .
1 288 THR .
1 289 THR .
1 290 THR .
1 291 PRO .
1 292 SER .
1 293 THR .
1 294 GLN .
1 295 ALA .
1 296 GLN .
1 297 GLN .
1 298 GLY .
1 299 GLN .
1 300 PRO .
1 301 ALA .
1 302 GLN .
1 303 ALA .
1 304 SER .
1 305 PRO .
1 306 SER .
1 307 SER .
1 308 ILE .
1 309 LYS .
1 310 GLN .
1 311 PRO .
1 312 GLY .
1 313 ASN .
1 314 SER .
1 315 GLU .
1 316 ARG .
1 317 LYS .
1 318 ARG .
1 319 LYS .
1 320 GLU .
1 321 PRO .
1 322 ARG .
1 323 GLU .
1 324 LYS .
1 325 ASP .
1 326 LYS .
1 327 GLU .
1 328 LYS .
1 329 GLU .
1 330 LYS .
1 331 GLU .
1 332 LYS .
1 333 ASN .
1 334 SER .
1 335 CYS .
1 336 VAL .
1 337 ILE .
1 338 LEU .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? C .
A 1 2 MET 2 ? ? ? C .
A 1 3 GLU 3 ? ? ? C .
A 1 4 ILE 4 ? ? ? C .
A 1 5 ILE 5 ? ? ? C .
A 1 6 THR 6 ? ? ? C .
A 1 7 ALA 7 ? ? ? C .
A 1 8 GLU 8 ? ? ? C .
A 1 9 GLN 9 ? ? ? C .
A 1 10 LEU 10 ? ? ? C .
A 1 11 MET 11 ? ? ? C .
A 1 12 GLU 12 ? ? ? C .
A 1 13 TYR 13 ? ? ? C .
A 1 14 LEU 14 ? ? ? C .
A 1 15 GLY 15 ? ? ? C .
A 1 16 ASP 16 ? ? ? C .
A 1 17 TYR 17 ? ? ? C .
A 1 18 MET 18 ? ? ? C .
A 1 19 LEU 19 ? ? ? C .
A 1 20 GLU 20 ? ? ? C .
A 1 21 ALA 21 ? ? ? C .
A 1 22 LYS 22 ? ? ? C .
A 1 23 PRO 23 ? ? ? C .
A 1 24 LYS 24 ? ? ? C .
A 1 25 GLU 25 ? ? ? C .
A 1 26 ILE 26 ? ? ? C .
A 1 27 SER 27 ? ? ? C .
A 1 28 GLU 28 ? ? ? C .
A 1 29 ILE 29 ? ? ? C .
A 1 30 GLN 30 ? ? ? C .
A 1 31 ARG 31 ? ? ? C .
A 1 32 VAL 32 ? ? ? C .
A 1 33 ASN 33 ? ? ? C .
A 1 34 TYR 34 ? ? ? C .
A 1 35 GLU 35 ? ? ? C .
A 1 36 GLN 36 ? ? ? C .
A 1 37 ASN 37 ? ? ? C .
A 1 38 MET 38 ? ? ? C .
A 1 39 SER 39 ? ? ? C .
A 1 40 ASP 40 ? ? ? C .
A 1 41 ALA 41 ? ? ? C .
A 1 42 MET 42 ? ? ? C .
A 1 43 ALA 43 ? ? ? C .
A 1 44 ILE 44 ? ? ? C .
A 1 45 LEU 45 ? ? ? C .
A 1 46 HIS 46 ? ? ? C .
A 1 47 LYS 47 ? ? ? C .
A 1 48 LEU 48 ? ? ? C .
A 1 49 GLN 49 ? ? ? C .
A 1 50 THR 50 ? ? ? C .
A 1 51 GLY 51 ? ? ? C .
A 1 52 LEU 52 ? ? ? C .
A 1 53 ASP 53 ? ? ? C .
A 1 54 VAL 54 ? ? ? C .
A 1 55 ASN 55 ? ? ? C .
A 1 56 VAL 56 ? ? ? C .
A 1 57 ARG 57 ? ? ? C .
A 1 58 PHE 58 ? ? ? C .
A 1 59 THR 59 ? ? ? C .
A 1 60 GLY 60 ? ? ? C .
A 1 61 VAL 61 ? ? ? C .
A 1 62 ARG 62 ? ? ? C .
A 1 63 VAL 63 ? ? ? C .
A 1 64 PHE 64 ? ? ? C .
A 1 65 GLU 65 ? ? ? C .
A 1 66 TYR 66 ? ? ? C .
A 1 67 THR 67 ? ? ? C .
A 1 68 PRO 68 ? ? ? C .
A 1 69 GLU 69 ? ? ? C .
A 1 70 CYS 70 ? ? ? C .
A 1 71 ILE 71 ? ? ? C .
A 1 72 VAL 72 ? ? ? C .
A 1 73 PHE 73 ? ? ? C .
A 1 74 ASP 74 ? ? ? C .
A 1 75 LEU 75 ? ? ? C .
A 1 76 LEU 76 ? ? ? C .
A 1 77 ASP 77 ? ? ? C .
A 1 78 ILE 78 ? ? ? C .
A 1 79 PRO 79 ? ? ? C .
A 1 80 LEU 80 ? ? ? C .
A 1 81 TYR 81 ? ? ? C .
A 1 82 HIS 82 ? ? ? C .
A 1 83 GLY 83 ? ? ? C .
A 1 84 TRP 84 ? ? ? C .
A 1 85 LEU 85 ? ? ? C .
A 1 86 VAL 86 ? ? ? C .
A 1 87 ASP 87 ? ? ? C .
A 1 88 PRO 88 ? ? ? C .
A 1 89 GLN 89 ? ? ? C .
A 1 90 ILE 90 ? ? ? C .
A 1 91 ASP 91 ? ? ? C .
A 1 92 ASP 92 ? ? ? C .
A 1 93 ILE 93 ? ? ? C .
A 1 94 VAL 94 ? ? ? C .
A 1 95 LYS 95 ? ? ? C .
A 1 96 ALA 96 ? ? ? C .
A 1 97 VAL 97 ? ? ? C .
A 1 98 GLY 98 ? ? ? C .
A 1 99 ASN 99 ? ? ? C .
A 1 100 CYS 100 ? ? ? C .
A 1 101 SER 101 ? ? ? C .
A 1 102 TYR 102 ? ? ? C .
A 1 103 ASN 103 ? ? ? C .
A 1 104 GLN 104 ? ? ? C .
A 1 105 LEU 105 ? ? ? C .
A 1 106 VAL 106 ? ? ? C .
A 1 107 GLU 107 ? ? ? C .
A 1 108 LYS 108 ? ? ? C .
A 1 109 ILE 109 ? ? ? C .
A 1 110 ILE 110 ? ? ? C .
A 1 111 SER 111 ? ? ? C .
A 1 112 CYS 112 ? ? ? C .
A 1 113 LYS 113 ? ? ? C .
A 1 114 GLN 114 ? ? ? C .
A 1 115 SER 115 ? ? ? C .
A 1 116 ASP 116 ? ? ? C .
A 1 117 ASN 117 ? ? ? C .
A 1 118 SER 118 ? ? ? C .
A 1 119 GLN 119 ? ? ? C .
A 1 120 LEU 120 ? ? ? C .
A 1 121 VAL 121 ? ? ? C .
A 1 122 SER 122 ? ? ? C .
A 1 123 GLU 123 ? ? ? C .
A 1 124 GLY 124 ? ? ? C .
A 1 125 PHE 125 ? ? ? C .
A 1 126 VAL 126 ? ? ? C .
A 1 127 ALA 127 ? ? ? C .
A 1 128 GLU 128 ? ? ? C .
A 1 129 GLN 129 ? ? ? C .
A 1 130 PHE 130 ? ? ? C .
A 1 131 LEU 131 ? ? ? C .
A 1 132 ASN 132 ? ? ? C .
A 1 133 ASN 133 ? ? ? C .
A 1 134 THR 134 ? ? ? C .
A 1 135 ALA 135 ? ? ? C .
A 1 136 THR 136 ? ? ? C .
A 1 137 GLN 137 ? ? ? C .
A 1 138 LEU 138 ? ? ? C .
A 1 139 THR 139 ? ? ? C .
A 1 140 TYR 140 ? ? ? C .
A 1 141 HIS 141 ? ? ? C .
A 1 142 GLY 142 ? ? ? C .
A 1 143 LEU 143 ? ? ? C .
A 1 144 CYS 144 ? ? ? C .
A 1 145 GLU 145 ? ? ? C .
A 1 146 LEU 146 ? ? ? C .
A 1 147 THR 147 ? ? ? C .
A 1 148 SER 148 ? ? ? C .
A 1 149 THR 149 ? ? ? C .
A 1 150 VAL 150 ? ? ? C .
A 1 151 GLN 151 ? ? ? C .
A 1 152 GLU 152 ? ? ? C .
A 1 153 GLY 153 ? ? ? C .
A 1 154 GLU 154 ? ? ? C .
A 1 155 LEU 155 ? ? ? C .
A 1 156 CYS 156 ? ? ? C .
A 1 157 VAL 157 ? ? ? C .
A 1 158 PHE 158 ? ? ? C .
A 1 159 PHE 159 ? ? ? C .
A 1 160 ARG 160 ? ? ? C .
A 1 161 ASN 161 ? ? ? C .
A 1 162 ASN 162 ? ? ? C .
A 1 163 HIS 163 ? ? ? C .
A 1 164 PHE 164 ? ? ? C .
A 1 165 SER 165 ? ? ? C .
A 1 166 THR 166 ? ? ? C .
A 1 167 MET 167 ? ? ? C .
A 1 168 THR 168 ? ? ? C .
A 1 169 LYS 169 ? ? ? C .
A 1 170 TYR 170 ? ? ? C .
A 1 171 LYS 171 ? ? ? C .
A 1 172 GLY 172 ? ? ? C .
A 1 173 GLN 173 ? ? ? C .
A 1 174 LEU 174 ? ? ? C .
A 1 175 TYR 175 ? ? ? C .
A 1 176 LEU 176 ? ? ? C .
A 1 177 LEU 177 ? ? ? C .
A 1 178 VAL 178 ? ? ? C .
A 1 179 THR 179 ? ? ? C .
A 1 180 ASP 180 ? ? ? C .
A 1 181 GLN 181 ? ? ? C .
A 1 182 GLY 182 ? ? ? C .
A 1 183 PHE 183 ? ? ? C .
A 1 184 LEU 184 ? ? ? C .
A 1 185 THR 185 ? ? ? C .
A 1 186 GLU 186 ? ? ? C .
A 1 187 GLU 187 ? ? ? C .
A 1 188 LYS 188 ? ? ? C .
A 1 189 ILE 189 ? ? ? C .
A 1 190 VAL 190 ? ? ? C .
A 1 191 TRP 191 ? ? ? C .
A 1 192 GLU 192 ? ? ? C .
A 1 193 SER 193 ? ? ? C .
A 1 194 LEU 194 ? ? ? C .
A 1 195 HIS 195 ? ? ? C .
A 1 196 ASN 196 ? ? ? C .
A 1 197 VAL 197 ? ? ? C .
A 1 198 ASP 198 ? ? ? C .
A 1 199 GLY 199 ? ? ? C .
A 1 200 ASP 200 ? ? ? C .
A 1 201 GLY 201 ? ? ? C .
A 1 202 ASN 202 ? ? ? C .
A 1 203 PHE 203 ? ? ? C .
A 1 204 CYS 204 ? ? ? C .
A 1 205 ASP 205 ? ? ? C .
A 1 206 SER 206 ? ? ? C .
A 1 207 GLU 207 ? ? ? C .
A 1 208 PHE 208 ? ? ? C .
A 1 209 HIS 209 ? ? ? C .
A 1 210 LEU 210 ? ? ? C .
A 1 211 ARG 211 ? ? ? C .
A 1 212 PRO 212 ? ? ? C .
A 1 213 PRO 213 ? ? ? C .
A 1 214 SER 214 ? ? ? C .
A 1 215 ASP 215 ? ? ? C .
A 1 216 PRO 216 ? ? ? C .
A 1 217 GLU 217 ? ? ? C .
A 1 218 THR 218 ? ? ? C .
A 1 219 VAL 219 ? ? ? C .
A 1 220 TYR 220 ? ? ? C .
A 1 221 LYS 221 ? ? ? C .
A 1 222 GLY 222 ? ? ? C .
A 1 223 GLN 223 ? ? ? C .
A 1 224 GLN 224 ? ? ? C .
A 1 225 ASP 225 ? ? ? C .
A 1 226 GLN 226 ? ? ? C .
A 1 227 ILE 227 ? ? ? C .
A 1 228 ASP 228 ? ? ? C .
A 1 229 GLN 229 ? ? ? C .
A 1 230 ASP 230 ? ? ? C .
A 1 231 TYR 231 ? ? ? C .
A 1 232 LEU 232 ? ? ? C .
A 1 233 MET 233 ? ? ? C .
A 1 234 ALA 234 ? ? ? C .
A 1 235 LEU 235 ? ? ? C .
A 1 236 SER 236 ? ? ? C .
A 1 237 LEU 237 ? ? ? C .
A 1 238 GLN 238 ? ? ? C .
A 1 239 GLN 239 ? ? ? C .
A 1 240 GLU 240 ? ? ? C .
A 1 241 GLN 241 ? ? ? C .
A 1 242 GLN 242 ? ? ? C .
A 1 243 SER 243 ? ? ? C .
A 1 244 GLN 244 ? ? ? C .
A 1 245 GLU 245 ? ? ? C .
A 1 246 ILE 246 ? ? ? C .
A 1 247 ASN 247 ? ? ? C .
A 1 248 TRP 248 ? ? ? C .
A 1 249 GLU 249 ? ? ? C .
A 1 250 GLN 250 ? ? ? C .
A 1 251 ILE 251 ? ? ? C .
A 1 252 PRO 252 ? ? ? C .
A 1 253 GLU 253 253 GLU GLU C .
A 1 254 GLY 254 254 GLY GLY C .
A 1 255 ILE 255 255 ILE ILE C .
A 1 256 SER 256 256 SER SER C .
A 1 257 ASP 257 257 ASP ASP C .
A 1 258 LEU 258 258 LEU LEU C .
A 1 259 GLU 259 259 GLU GLU C .
A 1 260 LEU 260 260 LEU LEU C .
A 1 261 ALA 261 261 ALA ALA C .
A 1 262 LYS 262 262 LYS LYS C .
A 1 263 LYS 263 263 LYS LYS C .
A 1 264 LEU 264 264 LEU LEU C .
A 1 265 GLN 265 265 GLN GLN C .
A 1 266 GLU 266 266 GLU GLU C .
A 1 267 GLU 267 267 GLU GLU C .
A 1 268 GLU 268 268 GLU GLU C .
A 1 269 ASP 269 269 ASP ASP C .
A 1 270 ARG 270 270 ARG ARG C .
A 1 271 ARG 271 271 ARG ARG C .
A 1 272 ALA 272 ? ? ? C .
A 1 273 SER 273 ? ? ? C .
A 1 274 GLN 274 ? ? ? C .
A 1 275 TYR 275 ? ? ? C .
A 1 276 TYR 276 ? ? ? C .
A 1 277 GLN 277 ? ? ? C .
A 1 278 GLU 278 ? ? ? C .
A 1 279 GLN 279 ? ? ? C .
A 1 280 GLU 280 ? ? ? C .
A 1 281 GLN 281 ? ? ? C .
A 1 282 ALA 282 ? ? ? C .
A 1 283 GLN 283 ? ? ? C .
A 1 284 ALA 284 ? ? ? C .
A 1 285 VAL 285 ? ? ? C .
A 1 286 VAL 286 ? ? ? C .
A 1 287 THR 287 ? ? ? C .
A 1 288 THR 288 ? ? ? C .
A 1 289 THR 289 ? ? ? C .
A 1 290 THR 290 ? ? ? C .
A 1 291 PRO 291 ? ? ? C .
A 1 292 SER 292 ? ? ? C .
A 1 293 THR 293 ? ? ? C .
A 1 294 GLN 294 ? ? ? C .
A 1 295 ALA 295 ? ? ? C .
A 1 296 GLN 296 ? ? ? C .
A 1 297 GLN 297 ? ? ? C .
A 1 298 GLY 298 ? ? ? C .
A 1 299 GLN 299 ? ? ? C .
A 1 300 PRO 300 ? ? ? C .
A 1 301 ALA 301 ? ? ? C .
A 1 302 GLN 302 ? ? ? C .
A 1 303 ALA 303 ? ? ? C .
A 1 304 SER 304 ? ? ? C .
A 1 305 PRO 305 ? ? ? C .
A 1 306 SER 306 ? ? ? C .
A 1 307 SER 307 ? ? ? C .
A 1 308 ILE 308 ? ? ? C .
A 1 309 LYS 309 ? ? ? C .
A 1 310 GLN 310 ? ? ? C .
A 1 311 PRO 311 ? ? ? C .
A 1 312 GLY 312 ? ? ? C .
A 1 313 ASN 313 ? ? ? C .
A 1 314 SER 314 ? ? ? C .
A 1 315 GLU 315 ? ? ? C .
A 1 316 ARG 316 ? ? ? C .
A 1 317 LYS 317 ? ? ? C .
A 1 318 ARG 318 ? ? ? C .
A 1 319 LYS 319 ? ? ? C .
A 1 320 GLU 320 ? ? ? C .
A 1 321 PRO 321 ? ? ? C .
A 1 322 ARG 322 ? ? ? C .
A 1 323 GLU 323 ? ? ? C .
A 1 324 LYS 324 ? ? ? C .
A 1 325 ASP 325 ? ? ? C .
A 1 326 LYS 326 ? ? ? C .
A 1 327 GLU 327 ? ? ? C .
A 1 328 LYS 328 ? ? ? C .
A 1 329 GLU 329 ? ? ? C .
A 1 330 LYS 330 ? ? ? C .
A 1 331 GLU 331 ? ? ? C .
A 1 332 LYS 332 ? ? ? C .
A 1 333 ASN 333 ? ? ? C .
A 1 334 SER 334 ? ? ? C .
A 1 335 CYS 335 ? ? ? C .
A 1 336 VAL 336 ? ? ? C .
A 1 337 ILE 337 ? ? ? C .
A 1 338 LEU 338 ? ? ? C .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Ubiquitin carboxyl-terminal hydrolase MINDY-1 {PDB ID=5mn9, label_asym_id=C, auth_asym_id=C, SMTL ID=5mn9.1.C}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 5mn9, label_asym_id=C'
'target-template alignment' .
4 'model 2' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2025-02-12
6 PDB https://www.wwpdb.org . 2025-02-07
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A C 2 1 C
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 GPLGSQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQ
GPLGSQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQ
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 6 44
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 5mn9 2024-01-17
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 338
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 338 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 2.6e-06 61.538
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1
MMEIITAEQLMEYLGDYMLEAKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSQLVSEGFVAEQFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKIVWESLHNVDGDGNFCDSEFHLRPPSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAQAVVTTTTPSTQAQQGQPAQASPSSIKQPGNSERKRKEPREKDKEKEKEKNSCVIL
2 1 2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QVDQDYLIALSLQQQQPR-------GPLGLTDLELAQQLQQEEYQQ-------------------------------------------------------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 5mn9.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 2' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLU 253 253 ? A 27.916 88.389 10.644 1 1 C GLU 0.500 1
ATOM 2 C CA . GLU 253 253 ? A 29.145 89.219 10.795 1 1 C GLU 0.500 1
ATOM 3 C C . GLU 253 253 ? A 29.078 90.306 11.871 1 1 C GLU 0.500 1
ATOM 4 O O . GLU 253 253 ? A 29.431 91.438 11.642 1 1 C GLU 0.500 1
ATOM 5 C CB . GLU 253 253 ? A 29.384 89.762 9.373 1 1 C GLU 0.500 1
ATOM 6 C CG . GLU 253 253 ? A 29.732 88.638 8.359 1 1 C GLU 0.500 1
ATOM 7 C CD . GLU 253 253 ? A 30.028 89.225 6.981 1 1 C GLU 0.500 1
ATOM 8 O OE1 . GLU 253 253 ? A 30.025 90.472 6.862 1 1 C GLU 0.500 1
ATOM 9 O OE2 . GLU 253 253 ? A 30.297 88.399 6.077 1 1 C GLU 0.500 1
ATOM 10 N N . GLY 254 254 ? A 28.625 89.984 13.127 1 1 C GLY 0.580 1
ATOM 11 C CA . GLY 254 254 ? A 28.470 91.022 14.150 1 1 C GLY 0.580 1
ATOM 12 C C . GLY 254 254 ? A 27.586 92.169 13.745 1 1 C GLY 0.580 1
ATOM 13 O O . GLY 254 254 ? A 26.428 91.971 13.391 1 1 C GLY 0.580 1
ATOM 14 N N . ILE 255 255 ? A 28.126 93.394 13.782 1 1 C ILE 0.570 1
ATOM 15 C CA . ILE 255 255 ? A 27.390 94.607 13.551 1 1 C ILE 0.570 1
ATOM 16 C C . ILE 255 255 ? A 27.509 95.059 12.088 1 1 C ILE 0.570 1
ATOM 17 O O . ILE 255 255 ? A 26.881 96.037 11.688 1 1 C ILE 0.570 1
ATOM 18 C CB . ILE 255 255 ? A 27.902 95.647 14.554 1 1 C ILE 0.570 1
ATOM 19 C CG1 . ILE 255 255 ? A 26.889 96.809 14.702 1 1 C ILE 0.570 1
ATOM 20 C CG2 . ILE 255 255 ? A 29.368 96.031 14.207 1 1 C ILE 0.570 1
ATOM 21 C CD1 . ILE 255 255 ? A 27.243 97.872 15.746 1 1 C ILE 0.570 1
ATOM 22 N N . SER 256 256 ? A 28.255 94.313 11.218 1 1 C SER 0.570 1
ATOM 23 C CA . SER 256 256 ? A 28.576 94.699 9.836 1 1 C SER 0.570 1
ATOM 24 C C . SER 256 256 ? A 27.386 95.106 9.006 1 1 C SER 0.570 1
ATOM 25 O O . SER 256 256 ? A 27.435 96.141 8.346 1 1 C SER 0.570 1
ATOM 26 C CB . SER 256 256 ? A 29.255 93.570 9.009 1 1 C SER 0.570 1
ATOM 27 O OG . SER 256 256 ? A 30.563 93.289 9.497 1 1 C SER 0.570 1
ATOM 28 N N . ASP 257 257 ? A 26.278 94.340 9.067 1 1 C ASP 0.590 1
ATOM 29 C CA . ASP 257 257 ? A 25.026 94.619 8.390 1 1 C ASP 0.590 1
ATOM 30 C C . ASP 257 257 ? A 24.380 95.932 8.840 1 1 C ASP 0.590 1
ATOM 31 O O . ASP 257 257 ? A 23.983 96.750 8.022 1 1 C ASP 0.590 1
ATOM 32 C CB . ASP 257 257 ? A 24.049 93.417 8.582 1 1 C ASP 0.590 1
ATOM 33 C CG . ASP 257 257 ? A 24.580 92.178 7.872 1 1 C ASP 0.590 1
ATOM 34 O OD1 . ASP 257 257 ? A 25.498 92.327 7.033 1 1 C ASP 0.590 1
ATOM 35 O OD2 . ASP 257 257 ? A 24.095 91.067 8.201 1 1 C ASP 0.590 1
ATOM 36 N N . LEU 258 258 ? A 24.316 96.202 10.166 1 1 C LEU 0.620 1
ATOM 37 C CA . LEU 258 258 ? A 23.764 97.433 10.707 1 1 C LEU 0.620 1
ATOM 38 C C . LEU 258 258 ? A 24.570 98.681 10.339 1 1 C LEU 0.620 1
ATOM 39 O O . LEU 258 258 ? A 24.012 99.684 9.875 1 1 C LEU 0.620 1
ATOM 40 C CB . LEU 258 258 ? A 23.686 97.313 12.251 1 1 C LEU 0.620 1
ATOM 41 C CG . LEU 258 258 ? A 23.188 98.577 12.998 1 1 C LEU 0.620 1
ATOM 42 C CD1 . LEU 258 258 ? A 21.862 99.144 12.444 1 1 C LEU 0.620 1
ATOM 43 C CD2 . LEU 258 258 ? A 23.060 98.275 14.500 1 1 C LEU 0.620 1
ATOM 44 N N . GLU 259 259 ? A 25.912 98.655 10.497 1 1 C GLU 0.650 1
ATOM 45 C CA . GLU 259 259 ? A 26.775 99.777 10.156 1 1 C GLU 0.650 1
ATOM 46 C C . GLU 259 259 ? A 26.870 100.026 8.671 1 1 C GLU 0.650 1
ATOM 47 O O . GLU 259 259 ? A 26.874 101.176 8.228 1 1 C GLU 0.650 1
ATOM 48 C CB . GLU 259 259 ? A 28.191 99.679 10.749 1 1 C GLU 0.650 1
ATOM 49 C CG . GLU 259 259 ? A 28.167 99.806 12.283 1 1 C GLU 0.650 1
ATOM 50 C CD . GLU 259 259 ? A 29.552 100.176 12.796 1 1 C GLU 0.650 1
ATOM 51 O OE1 . GLU 259 259 ? A 30.000 101.309 12.497 1 1 C GLU 0.650 1
ATOM 52 O OE2 . GLU 259 259 ? A 30.175 99.328 13.458 1 1 C GLU 0.650 1
ATOM 53 N N . LEU 260 260 ? A 26.915 98.950 7.856 1 1 C LEU 0.680 1
ATOM 54 C CA . LEU 260 260 ? A 26.804 99.041 6.418 1 1 C LEU 0.680 1
ATOM 55 C C . LEU 260 260 ? A 25.464 99.637 5.989 1 1 C LEU 0.680 1
ATOM 56 O O . LEU 260 260 ? A 25.449 100.634 5.271 1 1 C LEU 0.680 1
ATOM 57 C CB . LEU 260 260 ? A 27.014 97.639 5.790 1 1 C LEU 0.680 1
ATOM 58 C CG . LEU 260 260 ? A 27.144 97.581 4.252 1 1 C LEU 0.680 1
ATOM 59 C CD1 . LEU 260 260 ? A 28.195 98.570 3.704 1 1 C LEU 0.680 1
ATOM 60 C CD2 . LEU 260 260 ? A 27.490 96.141 3.833 1 1 C LEU 0.680 1
ATOM 61 N N . ALA 261 261 ? A 24.311 99.138 6.503 1 1 C ALA 0.720 1
ATOM 62 C CA . ALA 261 261 ? A 22.976 99.645 6.201 1 1 C ALA 0.720 1
ATOM 63 C C . ALA 261 261 ? A 22.786 101.109 6.562 1 1 C ALA 0.720 1
ATOM 64 O O . ALA 261 261 ? A 22.217 101.883 5.773 1 1 C ALA 0.720 1
ATOM 65 C CB . ALA 261 261 ? A 21.904 98.815 6.953 1 1 C ALA 0.720 1
ATOM 66 N N . LYS 262 262 ? A 23.281 101.556 7.728 1 1 C LYS 0.670 1
ATOM 67 C CA . LYS 262 262 ? A 23.278 102.944 8.140 1 1 C LYS 0.670 1
ATOM 68 C C . LYS 262 262 ? A 24.061 103.877 7.204 1 1 C LYS 0.670 1
ATOM 69 O O . LYS 262 262 ? A 23.587 104.933 6.833 1 1 C LYS 0.670 1
ATOM 70 C CB . LYS 262 262 ? A 23.843 103.096 9.573 1 1 C LYS 0.670 1
ATOM 71 C CG . LYS 262 262 ? A 23.759 104.544 10.087 1 1 C LYS 0.670 1
ATOM 72 C CD . LYS 262 262 ? A 24.195 104.685 11.548 1 1 C LYS 0.670 1
ATOM 73 C CE . LYS 262 262 ? A 24.114 106.134 12.039 1 1 C LYS 0.670 1
ATOM 74 N NZ . LYS 262 262 ? A 24.538 106.196 13.452 1 1 C LYS 0.670 1
ATOM 75 N N . LYS 263 263 ? A 25.294 103.466 6.793 1 1 C LYS 0.680 1
ATOM 76 C CA . LYS 263 263 ? A 26.095 104.172 5.804 1 1 C LYS 0.680 1
ATOM 77 C C . LYS 263 263 ? A 25.436 104.218 4.432 1 1 C LYS 0.680 1
ATOM 78 O O . LYS 263 263 ? A 25.356 105.262 3.826 1 1 C LYS 0.680 1
ATOM 79 C CB . LYS 263 263 ? A 27.506 103.546 5.685 1 1 C LYS 0.680 1
ATOM 80 C CG . LYS 263 263 ? A 28.358 103.799 6.939 1 1 C LYS 0.680 1
ATOM 81 C CD . LYS 263 263 ? A 29.738 103.127 6.862 1 1 C LYS 0.680 1
ATOM 82 C CE . LYS 263 263 ? A 30.584 103.362 8.120 1 1 C LYS 0.680 1
ATOM 83 N NZ . LYS 263 263 ? A 31.875 102.652 8.001 1 1 C LYS 0.680 1
ATOM 84 N N . LEU 264 264 ? A 24.873 103.081 3.951 1 1 C LEU 0.690 1
ATOM 85 C CA . LEU 264 264 ? A 24.147 103.068 2.691 1 1 C LEU 0.690 1
ATOM 86 C C . LEU 264 264 ? A 22.904 103.934 2.710 1 1 C LEU 0.690 1
ATOM 87 O O . LEU 264 264 ? A 22.635 104.665 1.758 1 1 C LEU 0.690 1
ATOM 88 C CB . LEU 264 264 ? A 23.750 101.637 2.289 1 1 C LEU 0.690 1
ATOM 89 C CG . LEU 264 264 ? A 24.968 100.728 2.027 1 1 C LEU 0.690 1
ATOM 90 C CD1 . LEU 264 264 ? A 24.474 99.304 1.731 1 1 C LEU 0.690 1
ATOM 91 C CD2 . LEU 264 264 ? A 25.913 101.261 0.925 1 1 C LEU 0.690 1
ATOM 92 N N . GLN 265 265 ? A 22.119 103.927 3.810 1 1 C GLN 0.690 1
ATOM 93 C CA . GLN 265 265 ? A 20.961 104.797 3.932 1 1 C GLN 0.690 1
ATOM 94 C C . GLN 265 265 ? A 21.306 106.281 3.844 1 1 C GLN 0.690 1
ATOM 95 O O . GLN 265 265 ? A 20.669 107.046 3.139 1 1 C GLN 0.690 1
ATOM 96 C CB . GLN 265 265 ? A 20.205 104.547 5.269 1 1 C GLN 0.690 1
ATOM 97 C CG . GLN 265 265 ? A 18.827 105.258 5.384 1 1 C GLN 0.690 1
ATOM 98 C CD . GLN 265 265 ? A 17.910 104.849 4.231 1 1 C GLN 0.690 1
ATOM 99 O OE1 . GLN 265 265 ? A 17.378 103.734 4.219 1 1 C GLN 0.690 1
ATOM 100 N NE2 . GLN 265 265 ? A 17.737 105.732 3.222 1 1 C GLN 0.690 1
ATOM 101 N N . GLU 266 266 ? A 22.402 106.679 4.514 1 1 C GLU 0.670 1
ATOM 102 C CA . GLU 266 266 ? A 22.998 107.994 4.441 1 1 C GLU 0.670 1
ATOM 103 C C . GLU 266 266 ? A 23.463 108.354 3.021 1 1 C GLU 0.670 1
ATOM 104 O O . GLU 266 266 ? A 23.242 109.464 2.541 1 1 C GLU 0.670 1
ATOM 105 C CB . GLU 266 266 ? A 24.176 107.968 5.446 1 1 C GLU 0.670 1
ATOM 106 C CG . GLU 266 266 ? A 25.116 109.191 5.442 1 1 C GLU 0.670 1
ATOM 107 C CD . GLU 266 266 ? A 24.521 110.533 5.841 1 1 C GLU 0.670 1
ATOM 108 O OE1 . GLU 266 266 ? A 25.166 111.516 5.386 1 1 C GLU 0.670 1
ATOM 109 O OE2 . GLU 266 266 ? A 23.545 110.601 6.611 1 1 C GLU 0.670 1
ATOM 110 N N . GLU 267 267 ? A 24.088 107.421 2.261 1 1 C GLU 0.680 1
ATOM 111 C CA . GLU 267 267 ? A 24.422 107.622 0.852 1 1 C GLU 0.680 1
ATOM 112 C C . GLU 267 267 ? A 23.213 107.907 -0.041 1 1 C GLU 0.680 1
ATOM 113 O O . GLU 267 267 ? A 23.257 108.813 -0.867 1 1 C GLU 0.680 1
ATOM 114 C CB . GLU 267 267 ? A 25.191 106.411 0.260 1 1 C GLU 0.680 1
ATOM 115 C CG . GLU 267 267 ? A 26.603 106.199 0.863 1 1 C GLU 0.680 1
ATOM 116 C CD . GLU 267 267 ? A 27.318 104.961 0.320 1 1 C GLU 0.680 1
ATOM 117 O OE1 . GLU 267 267 ? A 26.964 104.492 -0.789 1 1 C GLU 0.680 1
ATOM 118 O OE2 . GLU 267 267 ? A 28.252 104.495 1.025 1 1 C GLU 0.680 1
ATOM 119 N N . GLU 268 268 ? A 22.095 107.168 0.166 1 1 C GLU 0.690 1
ATOM 120 C CA . GLU 268 268 ? A 20.790 107.415 -0.431 1 1 C GLU 0.690 1
ATOM 121 C C . GLU 268 268 ? A 20.195 108.783 -0.109 1 1 C GLU 0.690 1
ATOM 122 O O . GLU 268 268 ? A 19.665 109.434 -0.991 1 1 C GLU 0.690 1
ATOM 123 C CB . GLU 268 268 ? A 19.752 106.335 -0.003 1 1 C GLU 0.690 1
ATOM 124 C CG . GLU 268 268 ? A 20.034 104.938 -0.597 1 1 C GLU 0.690 1
ATOM 125 C CD . GLU 268 268 ? A 19.811 104.934 -2.112 1 1 C GLU 0.690 1
ATOM 126 O OE1 . GLU 268 268 ? A 19.217 105.912 -2.668 1 1 C GLU 0.690 1
ATOM 127 O OE2 . GLU 268 268 ? A 20.221 103.930 -2.739 1 1 C GLU 0.690 1
ATOM 128 N N . ASP 269 269 ? A 20.307 109.254 1.157 1 1 C ASP 0.690 1
ATOM 129 C CA . ASP 269 269 ? A 19.787 110.531 1.615 1 1 C ASP 0.690 1
ATOM 130 C C . ASP 269 269 ? A 20.672 111.734 1.226 1 1 C ASP 0.690 1
ATOM 131 O O . ASP 269 269 ? A 20.267 112.881 1.334 1 1 C ASP 0.690 1
ATOM 132 C CB . ASP 269 269 ? A 19.625 110.480 3.161 1 1 C ASP 0.690 1
ATOM 133 C CG . ASP 269 269 ? A 18.525 109.521 3.606 1 1 C ASP 0.690 1
ATOM 134 O OD1 . ASP 269 269 ? A 17.718 109.056 2.759 1 1 C ASP 0.690 1
ATOM 135 O OD2 . ASP 269 269 ? A 18.467 109.240 4.831 1 1 C ASP 0.690 1
ATOM 136 N N . ARG 270 270 ? A 21.925 111.494 0.759 1 1 C ARG 0.640 1
ATOM 137 C CA . ARG 270 270 ? A 22.745 112.526 0.128 1 1 C ARG 0.640 1
ATOM 138 C C . ARG 270 270 ? A 22.513 112.703 -1.375 1 1 C ARG 0.640 1
ATOM 139 O O . ARG 270 270 ? A 23.053 113.633 -1.965 1 1 C ARG 0.640 1
ATOM 140 C CB . ARG 270 270 ? A 24.253 112.220 0.279 1 1 C ARG 0.640 1
ATOM 141 C CG . ARG 270 270 ? A 24.775 112.314 1.721 1 1 C ARG 0.640 1
ATOM 142 C CD . ARG 270 270 ? A 26.254 111.964 1.775 1 1 C ARG 0.640 1
ATOM 143 N NE . ARG 270 270 ? A 26.603 111.656 3.187 1 1 C ARG 0.640 1
ATOM 144 C CZ . ARG 270 270 ? A 27.785 111.171 3.562 1 1 C ARG 0.640 1
ATOM 145 N NH1 . ARG 270 270 ? A 28.771 111.017 2.679 1 1 C ARG 0.640 1
ATOM 146 N NH2 . ARG 270 270 ? A 27.963 110.808 4.825 1 1 C ARG 0.640 1
ATOM 147 N N . ARG 271 271 ? A 21.749 111.791 -2.009 1 1 C ARG 0.480 1
ATOM 148 C CA . ARG 271 271 ? A 21.172 111.962 -3.331 1 1 C ARG 0.480 1
ATOM 149 C C . ARG 271 271 ? A 19.894 112.858 -3.307 1 1 C ARG 0.480 1
ATOM 150 O O . ARG 271 271 ? A 19.353 113.149 -2.213 1 1 C ARG 0.480 1
ATOM 151 C CB . ARG 271 271 ? A 20.838 110.535 -3.887 1 1 C ARG 0.480 1
ATOM 152 C CG . ARG 271 271 ? A 20.268 110.485 -5.328 1 1 C ARG 0.480 1
ATOM 153 C CD . ARG 271 271 ? A 19.903 109.118 -5.945 1 1 C ARG 0.480 1
ATOM 154 N NE . ARG 271 271 ? A 19.101 108.308 -4.959 1 1 C ARG 0.480 1
ATOM 155 C CZ . ARG 271 271 ? A 17.818 108.478 -4.623 1 1 C ARG 0.480 1
ATOM 156 N NH1 . ARG 271 271 ? A 17.066 109.438 -5.164 1 1 C ARG 0.480 1
ATOM 157 N NH2 . ARG 271 271 ? A 17.345 107.724 -3.632 1 1 C ARG 0.480 1
ATOM 158 O OXT . ARG 271 271 ? A 19.447 113.263 -4.415 1 1 C ARG 0.480 1
#
#
loop_
_atom_type.symbol
C
N
O
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.635
2 1 3 0.035
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 253 GLU 1 0.500
2 1 A 254 GLY 1 0.580
3 1 A 255 ILE 1 0.570
4 1 A 256 SER 1 0.570
5 1 A 257 ASP 1 0.590
6 1 A 258 LEU 1 0.620
7 1 A 259 GLU 1 0.650
8 1 A 260 LEU 1 0.680
9 1 A 261 ALA 1 0.720
10 1 A 262 LYS 1 0.670
11 1 A 263 LYS 1 0.680
12 1 A 264 LEU 1 0.690
13 1 A 265 GLN 1 0.690
14 1 A 266 GLU 1 0.670
15 1 A 267 GLU 1 0.680
16 1 A 268 GLU 1 0.690
17 1 A 269 ASP 1 0.690
18 1 A 270 ARG 1 0.640
19 1 A 271 ARG 1 0.480
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
1 license
;This SWISS-MODEL protein model is copyright.
It is produced by the SWISS-MODEL server, developed by the Computational
Structural Biology Group at the SIB Swiss Institute of Bioinformatics at the
Biozentrum, University of Basel (https://swissmodel.expasy.org). This
model is licensed under the CC BY-SA 4.0 Creative Commons
Attribution-ShareAlike 4.0 International License
(https://creativecommons.org/licenses/by-sa/4.0/legalcode), i.e. you
can copy and redistribute the model in any medium or format,
transform and build upon the model for any purpose, even
commercially, under the following terms:
Attribution - You must give appropriate credit, provide a link to
the license, and indicate if changes were made. You may do so in any
reasonable manner, but not in any way that suggests the licensor
endorses you or your use. When you publish, patent or distribute
results that were fully or partially based on the model, please cite
the corresponding papers mentioned under JRNL.
ShareAlike - If you remix, transform, or build upon the material,
you must distribute your contributions under the same license as the
original.
No additional restrictions - you may not apply legal terms or
technological measures that legally restrict others from doing
anything the license permits.
Find a human-readable summary of (and not a substitute for) the
CC BY-SA 4.0 license at this link:
https://creativecommons.org/licenses/by-sa/4.0/
;
https://creativecommons.org/licenses/by-sa/4.0/legalcode
2 disclaimer
;The SWISS-MODEL SERVER produces theoretical models for
proteins. The results of any theoretical modelling procedure is
NON-EXPERIMENTAL and MUST be considered with care. These models may
contain significant errors. This is especially true for automated
modeling since there is no human intervention during model
building. Please read the header section and the logfile carefully
to know what templates and alignments were used during the model
building process. All information by the SWISS-MODEL SERVER is
provided "AS-IS", without any warranty, expressed or implied.
;
https://swissmodel.expasy.org/docs/terms_of_use#disclaimer
#