data_SMR-50eb9c3b349b66f0e85e2f490a53aff4_1
_entry.id SMR-50eb9c3b349b66f0e85e2f490a53aff4_1
_struct.entry_id SMR-50eb9c3b349b66f0e85e2f490a53aff4_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - P84636/ CYVB_VIOCT, Cyclotide vico-B

Estimated model accuracy of this model is 0.704, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries P84636'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service'
c59120ae913c122b22dc2ebae5eb59cce9b022ff package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.14.1 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 3803.309 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP CYVB_VIOCT P84636 1 GSIPCAESCVYIPCITGIAGCSCKNKVCYYN 'Cyclotide vico-B'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 31 1 31
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . CYVB_VIOCT P84636 . 1 31 341256 'Viola cotyledon (Violeta)' 2005-09-13
9098AA34EAFAD577
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A GSIPCAESCVYIPCITGIAGCSCKNKVCYYN
GSIPCAESCVYIPCITGIAGCSCKNKVCYYN
#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY .
1 2 SER .
1 3 ILE .
1 4 PRO .
1 5 CYS .
1 6 ALA .
1 7 GLU .
1 8 SER .
1 9 CYS .
1 10 VAL .
1 11 TYR .
1 12 ILE .
1 13 PRO .
1 14 CYS .
1 15 ILE .
1 16 THR .
1 17 GLY .
1 18 ILE .
1 19 ALA .
1 20 GLY .
1 21 CYS .
1 22 SER .
1 23 CYS .
1 24 LYS .
1 25 ASN .
1 26 LYS .
1 27 VAL .
1 28 CYS .
1 29 TYR .
1 30 TYR .
1 31 ASN .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 GLY 1 ? ? ? A .
A 1 2 SER 2 2 SER SER A .
A 1 3 ILE 3 3 ILE ILE A .
A 1 4 PRO 4 4 PRO PRO A .
A 1 5 CYS 5 5 CYS CYS A .
A 1 6 ALA 6 6 ALA ALA A .
A 1 7 GLU 7 7 GLU GLU A .
A 1 8 SER 8 8 SER SER A .
A 1 9 CYS 9 9 CYS CYS A .
A 1 10 VAL 10 10 VAL VAL A .
A 1 11 TYR 11 11 TYR TYR A .
A 1 12 ILE 12 12 ILE ILE A .
A 1 13 PRO 13 13 PRO PRO A .
A 1 14 CYS 14 14 CYS CYS A .
A 1 15 ILE 15 15 ILE ILE A .
A 1 16 THR 16 16 THR THR A .
A 1 17 GLY 17 17 GLY GLY A .
A 1 18 ILE 18 18 ILE ILE A .
A 1 19 ALA 19 19 ALA ALA A .
A 1 20 GLY 20 20 GLY GLY A .
A 1 21 CYS 21 21 CYS CYS A .
A 1 22 SER 22 22 SER SER A .
A 1 23 CYS 23 23 CYS CYS A .
A 1 24 LYS 24 24 LYS LYS A .
A 1 25 ASN 25 25 ASN ASN A .
A 1 26 LYS 26 26 LYS LYS A .
A 1 27 VAL 27 27 VAL VAL A .
A 1 28 CYS 28 28 CYS CYS A .
A 1 29 TYR 29 29 TYR TYR A .
A 1 30 TYR 30 30 TYR TYR A .
A 1 31 ASN 31 31 ASN ASN A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'Cyclotide hyen-D {PDB ID=7rii, label_asym_id=A, auth_asym_id=A, SMTL ID=7rii.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 7rii, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2025-05-01
6 PDB https://www.wwpdb.org . 2025-05-01
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 GFPCGESCVYLPCFTAAIGCSCKSKVCYKN GFPCGESCVYLPCFTAAIGCSCKSKVCYKN
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 1 30
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 7rii 2024-10-23
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 31
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 31 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 2.4e-19 66.667
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1 GSIPCAESCVYIPCITGIAGCSCKNKVCYYN
2 1 2 -GFPCGESCVYLPCFTAAIGCSCKSKVCYKN
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 7rii.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . SER 2 2 ? A 7.355 11.427 0.203 1 1 A SER 0.400 1
ATOM 2 C CA . SER 2 2 ? A 8.570 12.255 0.432 1 1 A SER 0.400 1
ATOM 3 C C . SER 2 2 ? A 8.859 12.527 1.878 1 1 A SER 0.400 1
ATOM 4 O O . SER 2 2 ? A 9.994 12.922 2.166 1 1 A SER 0.400 1
ATOM 5 C CB . SER 2 2 ? A 8.407 13.611 -0.278 1 1 A SER 0.400 1
ATOM 6 O OG . SER 2 2 ? A 8.193 13.495 -1.691 1 1 A SER 0.400 1
ATOM 7 N N . ILE 3 3 ? A 7.938 12.328 2.849 1 1 A ILE 0.490 1
ATOM 8 C CA . ILE 3 3 ? A 8.222 12.597 4.256 1 1 A ILE 0.490 1
ATOM 9 C C . ILE 3 3 ? A 8.354 11.288 5.019 1 1 A ILE 0.490 1
ATOM 10 O O . ILE 3 3 ? A 7.494 10.423 4.833 1 1 A ILE 0.490 1
ATOM 11 C CB . ILE 3 3 ? A 7.172 13.475 4.934 1 1 A ILE 0.490 1
ATOM 12 C CG1 . ILE 3 3 ? A 7.106 14.841 4.225 1 1 A ILE 0.490 1
ATOM 13 C CG2 . ILE 3 3 ? A 7.450 13.671 6.447 1 1 A ILE 0.490 1
ATOM 14 C CD1 . ILE 3 3 ? A 5.940 15.720 4.686 1 1 A ILE 0.490 1
ATOM 15 N N . PRO 4 4 ? A 9.379 11.028 5.834 1 1 A PRO 0.810 1
ATOM 16 C CA . PRO 4 4 ? A 9.474 9.822 6.633 1 1 A PRO 0.810 1
ATOM 17 C C . PRO 4 4 ? A 8.459 9.791 7.739 1 1 A PRO 0.810 1
ATOM 18 O O . PRO 4 4 ? A 8.130 10.822 8.316 1 1 A PRO 0.810 1
ATOM 19 C CB . PRO 4 4 ? A 10.896 9.846 7.212 1 1 A PRO 0.810 1
ATOM 20 C CG . PRO 4 4 ? A 11.272 11.327 7.244 1 1 A PRO 0.810 1
ATOM 21 C CD . PRO 4 4 ? A 10.520 11.910 6.053 1 1 A PRO 0.810 1
ATOM 22 N N . CYS 5 5 ? A 7.962 8.594 8.068 1 1 A CYS 0.790 1
ATOM 23 C CA . CYS 5 5 ? A 6.905 8.435 9.044 1 1 A CYS 0.790 1
ATOM 24 C C . CYS 5 5 ? A 7.394 7.958 10.392 1 1 A CYS 0.790 1
ATOM 25 O O . CYS 5 5 ? A 6.597 7.527 11.221 1 1 A CYS 0.790 1
ATOM 26 C CB . CYS 5 5 ? A 5.882 7.418 8.535 1 1 A CYS 0.790 1
ATOM 27 S SG . CYS 5 5 ? A 5.116 7.990 7.004 1 1 A CYS 0.790 1
ATOM 28 N N . ALA 6 6 ? A 8.721 7.993 10.613 1 1 A ALA 0.770 1
ATOM 29 C CA . ALA 6 6 ? A 9.356 7.649 11.872 1 1 A ALA 0.770 1
ATOM 30 C C . ALA 6 6 ? A 9.367 6.158 12.161 1 1 A ALA 0.770 1
ATOM 31 O O . ALA 6 6 ? A 9.295 5.726 13.309 1 1 A ALA 0.770 1
ATOM 32 C CB . ALA 6 6 ? A 8.769 8.445 13.059 1 1 A ALA 0.770 1
ATOM 33 N N . GLU 7 7 ? A 9.501 5.329 11.111 1 1 A GLU 0.750 1
ATOM 34 C CA . GLU 7 7 ? A 9.417 3.907 11.281 1 1 A GLU 0.750 1
ATOM 35 C C . GLU 7 7 ? A 10.346 3.254 10.288 1 1 A GLU 0.750 1
ATOM 36 O O . GLU 7 7 ? A 10.354 3.568 9.095 1 1 A GLU 0.750 1
ATOM 37 C CB . GLU 7 7 ? A 7.956 3.423 11.135 1 1 A GLU 0.750 1
ATOM 38 C CG . GLU 7 7 ? A 7.765 1.919 11.444 1 1 A GLU 0.750 1
ATOM 39 C CD . GLU 7 7 ? A 6.354 1.380 11.226 1 1 A GLU 0.750 1
ATOM 40 O OE1 . GLU 7 7 ? A 6.055 0.281 11.751 1 1 A GLU 0.750 1
ATOM 41 O OE2 . GLU 7 7 ? A 5.558 2.022 10.498 1 1 A GLU 0.750 1
ATOM 42 N N . SER 8 8 ? A 11.208 2.351 10.782 1 1 A SER 0.690 1
ATOM 43 C CA . SER 8 8 ? A 12.009 1.468 9.954 1 1 A SER 0.690 1
ATOM 44 C C . SER 8 8 ? A 11.183 0.352 9.356 1 1 A SER 0.690 1
ATOM 45 O O . SER 8 8 ? A 10.386 -0.266 10.052 1 1 A SER 0.690 1
ATOM 46 C CB . SER 8 8 ? A 13.132 0.815 10.800 1 1 A SER 0.690 1
ATOM 47 O OG . SER 8 8 ? A 13.942 -0.102 10.063 1 1 A SER 0.690 1
ATOM 48 N N . CYS 9 9 ? A 11.429 0.006 8.082 1 1 A CYS 0.740 1
ATOM 49 C CA . CYS 9 9 ? A 10.932 -1.230 7.508 1 1 A CYS 0.740 1
ATOM 50 C C . CYS 9 9 ? A 12.089 -2.034 6.958 1 1 A CYS 0.740 1
ATOM 51 O O . CYS 9 9 ? A 12.010 -2.669 5.909 1 1 A CYS 0.740 1
ATOM 52 C CB . CYS 9 9 ? A 9.810 -1.053 6.456 1 1 A CYS 0.740 1
ATOM 53 S SG . CYS 9 9 ? A 10.193 0.151 5.161 1 1 A CYS 0.740 1
ATOM 54 N N . VAL 10 10 ? A 13.227 -2.035 7.689 1 1 A VAL 0.700 1
ATOM 55 C CA . VAL 10 10 ? A 14.348 -2.939 7.445 1 1 A VAL 0.700 1
ATOM 56 C C . VAL 10 10 ? A 13.949 -4.406 7.548 1 1 A VAL 0.700 1
ATOM 57 O O . VAL 10 10 ? A 14.382 -5.230 6.745 1 1 A VAL 0.700 1
ATOM 58 C CB . VAL 10 10 ? A 15.504 -2.653 8.406 1 1 A VAL 0.700 1
ATOM 59 C CG1 . VAL 10 10 ? A 16.606 -3.736 8.362 1 1 A VAL 0.700 1
ATOM 60 C CG2 . VAL 10 10 ? A 16.120 -1.281 8.071 1 1 A VAL 0.700 1
ATOM 61 N N . TYR 11 11 ? A 13.104 -4.744 8.543 1 1 A TYR 0.610 1
ATOM 62 C CA . TYR 11 11 ? A 12.604 -6.086 8.753 1 1 A TYR 0.610 1
ATOM 63 C C . TYR 11 11 ? A 11.088 -6.075 8.785 1 1 A TYR 0.610 1
ATOM 64 O O . TYR 11 11 ? A 10.425 -6.681 7.949 1 1 A TYR 0.610 1
ATOM 65 C CB . TYR 11 11 ? A 13.191 -6.670 10.067 1 1 A TYR 0.610 1
ATOM 66 C CG . TYR 11 11 ? A 12.834 -8.116 10.241 1 1 A TYR 0.610 1
ATOM 67 C CD1 . TYR 11 11 ? A 13.591 -9.110 9.614 1 1 A TYR 0.610 1
ATOM 68 C CD2 . TYR 11 11 ? A 11.707 -8.496 10.978 1 1 A TYR 0.610 1
ATOM 69 C CE1 . TYR 11 11 ? A 13.229 -10.457 9.724 1 1 A TYR 0.610 1
ATOM 70 C CE2 . TYR 11 11 ? A 11.338 -9.841 11.082 1 1 A TYR 0.610 1
ATOM 71 C CZ . TYR 11 11 ? A 12.105 -10.823 10.459 1 1 A TYR 0.610 1
ATOM 72 O OH . TYR 11 11 ? A 11.748 -12.178 10.564 1 1 A TYR 0.610 1
ATOM 73 N N . ILE 12 12 ? A 10.494 -5.398 9.785 1 1 A ILE 0.630 1
ATOM 74 C CA . ILE 12 12 ? A 9.060 -5.281 9.951 1 1 A ILE 0.630 1
ATOM 75 C C . ILE 12 12 ? A 8.377 -4.542 8.799 1 1 A ILE 0.630 1
ATOM 76 O O . ILE 12 12 ? A 9.017 -3.720 8.147 1 1 A ILE 0.630 1
ATOM 77 C CB . ILE 12 12 ? A 8.712 -4.627 11.285 1 1 A ILE 0.630 1
ATOM 78 C CG1 . ILE 12 12 ? A 9.190 -3.160 11.351 1 1 A ILE 0.630 1
ATOM 79 C CG2 . ILE 12 12 ? A 9.281 -5.488 12.436 1 1 A ILE 0.630 1
ATOM 80 C CD1 . ILE 12 12 ? A 8.661 -2.391 12.562 1 1 A ILE 0.630 1
ATOM 81 N N . PRO 13 13 ? A 7.121 -4.774 8.455 1 1 A PRO 0.720 1
ATOM 82 C CA . PRO 13 13 ? A 6.361 -3.836 7.650 1 1 A PRO 0.720 1
ATOM 83 C C . PRO 13 13 ? A 6.080 -2.530 8.348 1 1 A PRO 0.720 1
ATOM 84 O O . PRO 13 13 ? A 6.291 -2.418 9.549 1 1 A PRO 0.720 1
ATOM 85 C CB . PRO 13 13 ? A 5.061 -4.591 7.370 1 1 A PRO 0.720 1
ATOM 86 C CG . PRO 13 13 ? A 4.857 -5.486 8.592 1 1 A PRO 0.720 1
ATOM 87 C CD . PRO 13 13 ? A 6.278 -5.810 9.041 1 1 A PRO 0.720 1
ATOM 88 N N . CYS 14 14 ? A 5.568 -1.543 7.596 1 1 A CYS 0.750 1
ATOM 89 C CA . CYS 14 14 ? A 5.183 -0.257 8.133 1 1 A CYS 0.750 1
ATOM 90 C C . CYS 14 14 ? A 3.801 -0.334 8.727 1 1 A CYS 0.750 1
ATOM 91 O O . CYS 14 14 ? A 2.803 -0.343 8.000 1 1 A CYS 0.750 1
ATOM 92 C CB . CYS 14 14 ? A 5.144 0.823 7.024 1 1 A CYS 0.750 1
ATOM 93 S SG . CYS 14 14 ? A 6.753 1.044 6.237 1 1 A CYS 0.750 1
ATOM 94 N N . ILE 15 15 ? A 3.683 -0.345 10.070 1 1 A ILE 0.690 1
ATOM 95 C CA . ILE 15 15 ? A 2.385 -0.283 10.717 1 1 A ILE 0.690 1
ATOM 96 C C . ILE 15 15 ? A 1.822 1.126 10.613 1 1 A ILE 0.690 1
ATOM 97 O O . ILE 15 15 ? A 0.612 1.342 10.681 1 1 A ILE 0.690 1
ATOM 98 C CB . ILE 15 15 ? A 2.404 -0.788 12.157 1 1 A ILE 0.690 1
ATOM 99 C CG1 . ILE 15 15 ? A 0.989 -1.189 12.625 1 1 A ILE 0.690 1
ATOM 100 C CG2 . ILE 15 15 ? A 3.047 0.231 13.120 1 1 A ILE 0.690 1
ATOM 101 C CD1 . ILE 15 15 ? A 0.996 -2.007 13.920 1 1 A ILE 0.690 1
ATOM 102 N N . THR 16 16 ? A 2.683 2.134 10.322 1 1 A THR 0.690 1
ATOM 103 C CA . THR 16 16 ? A 2.259 3.470 9.893 1 1 A THR 0.690 1
ATOM 104 C C . THR 16 16 ? A 1.512 3.521 8.574 1 1 A THR 0.690 1
ATOM 105 O O . THR 16 16 ? A 1.032 4.581 8.171 1 1 A THR 0.690 1
ATOM 106 C CB . THR 16 16 ? A 3.346 4.524 9.830 1 1 A THR 0.690 1
ATOM 107 O OG1 . THR 16 16 ? A 4.406 4.159 8.952 1 1 A THR 0.690 1
ATOM 108 C CG2 . THR 16 16 ? A 3.923 4.731 11.232 1 1 A THR 0.690 1
ATOM 109 N N . GLY 17 17 ? A 1.274 2.363 7.917 1 1 A GLY 0.710 1
ATOM 110 C CA . GLY 17 17 ? A 0.279 2.208 6.860 1 1 A GLY 0.710 1
ATOM 111 C C . GLY 17 17 ? A -1.104 2.613 7.277 1 1 A GLY 0.710 1
ATOM 112 O O . GLY 17 17 ? A -1.899 3.054 6.455 1 1 A GLY 0.710 1
ATOM 113 N N . ILE 18 18 ? A -1.388 2.559 8.595 1 1 A ILE 0.590 1
ATOM 114 C CA . ILE 18 18 ? A -2.597 3.094 9.201 1 1 A ILE 0.590 1
ATOM 115 C C . ILE 18 18 ? A -2.831 4.582 8.938 1 1 A ILE 0.590 1
ATOM 116 O O . ILE 18 18 ? A -3.967 5.038 8.824 1 1 A ILE 0.590 1
ATOM 117 C CB . ILE 18 18 ? A -2.632 2.809 10.707 1 1 A ILE 0.590 1
ATOM 118 C CG1 . ILE 18 18 ? A -4.057 2.920 11.292 1 1 A ILE 0.590 1
ATOM 119 C CG2 . ILE 18 18 ? A -1.632 3.693 11.495 1 1 A ILE 0.590 1
ATOM 120 C CD1 . ILE 18 18 ? A -5.040 1.880 10.741 1 1 A ILE 0.590 1
ATOM 121 N N . ALA 19 19 ? A -1.750 5.379 8.807 1 1 A ALA 0.680 1
ATOM 122 C CA . ALA 19 19 ? A -1.822 6.791 8.510 1 1 A ALA 0.680 1
ATOM 123 C C . ALA 19 19 ? A -1.242 7.081 7.137 1 1 A ALA 0.680 1
ATOM 124 O O . ALA 19 19 ? A -0.864 8.211 6.828 1 1 A ALA 0.680 1
ATOM 125 C CB . ALA 19 19 ? A -1.151 7.623 9.620 1 1 A ALA 0.680 1
ATOM 126 N N . GLY 20 20 ? A -1.199 6.057 6.258 1 1 A GLY 0.770 1
ATOM 127 C CA . GLY 20 20 ? A -0.921 6.239 4.842 1 1 A GLY 0.770 1
ATOM 128 C C . GLY 20 20 ? A 0.486 6.005 4.409 1 1 A GLY 0.770 1
ATOM 129 O O . GLY 20 20 ? A 0.826 6.218 3.250 1 1 A GLY 0.770 1
ATOM 130 N N . CYS 21 21 ? A 1.359 5.555 5.311 1 1 A CYS 0.800 1
ATOM 131 C CA . CYS 21 21 ? A 2.745 5.354 4.964 1 1 A CYS 0.800 1
ATOM 132 C C . CYS 21 21 ? A 3.019 4.003 4.345 1 1 A CYS 0.800 1
ATOM 133 O O . CYS 21 21 ? A 2.345 3.014 4.612 1 1 A CYS 0.800 1
ATOM 134 C CB . CYS 21 21 ? A 3.649 5.506 6.186 1 1 A CYS 0.800 1
ATOM 135 S SG . CYS 21 21 ? A 3.330 7.059 7.063 1 1 A CYS 0.800 1
ATOM 136 N N . SER 22 22 ? A 4.068 3.920 3.520 1 1 A SER 0.790 1
ATOM 137 C CA . SER 22 22 ? A 4.421 2.680 2.864 1 1 A SER 0.790 1
ATOM 138 C C . SER 22 22 ? A 5.906 2.530 2.921 1 1 A SER 0.790 1
ATOM 139 O O . SER 22 22 ? A 6.636 3.510 3.065 1 1 A SER 0.790 1
ATOM 140 C CB . SER 22 22 ? A 3.991 2.629 1.378 1 1 A SER 0.790 1
ATOM 141 O OG . SER 22 22 ? A 2.569 2.656 1.272 1 1 A SER 0.790 1
ATOM 142 N N . CYS 23 23 ? A 6.404 1.282 2.816 1 1 A CYS 0.800 1
ATOM 143 C CA . CYS 23 23 ? A 7.825 1.009 2.847 1 1 A CYS 0.800 1
ATOM 144 C C . CYS 23 23 ? A 8.493 1.395 1.551 1 1 A CYS 0.800 1
ATOM 145 O O . CYS 23 23 ? A 8.134 0.903 0.483 1 1 A CYS 0.800 1
ATOM 146 C CB . CYS 23 23 ? A 8.118 -0.485 3.135 1 1 A CYS 0.800 1
ATOM 147 S SG . CYS 23 23 ? A 9.873 -0.838 3.432 1 1 A CYS 0.800 1
ATOM 148 N N . LYS 24 24 ? A 9.498 2.278 1.611 1 1 A LYS 0.740 1
ATOM 149 C CA . LYS 24 24 ? A 10.280 2.614 0.455 1 1 A LYS 0.740 1
ATOM 150 C C . LYS 24 24 ? A 11.726 2.420 0.774 1 1 A LYS 0.740 1
ATOM 151 O O . LYS 24 24 ? A 12.353 3.260 1.414 1 1 A LYS 0.740 1
ATOM 152 C CB . LYS 24 24 ? A 10.060 4.078 0.058 1 1 A LYS 0.740 1
ATOM 153 C CG . LYS 24 24 ? A 8.633 4.332 -0.423 1 1 A LYS 0.740 1
ATOM 154 C CD . LYS 24 24 ? A 8.621 5.252 -1.639 1 1 A LYS 0.740 1
ATOM 155 C CE . LYS 24 24 ? A 7.217 5.630 -2.085 1 1 A LYS 0.740 1
ATOM 156 N NZ . LYS 24 24 ? A 7.301 6.632 -3.165 1 1 A LYS 0.740 1
ATOM 157 N N . ASN 25 25 ? A 12.284 1.276 0.327 1 1 A ASN 0.640 1
ATOM 158 C CA . ASN 25 25 ? A 13.669 0.897 0.517 1 1 A ASN 0.640 1
ATOM 159 C C . ASN 25 25 ? A 14.155 1.047 1.952 1 1 A ASN 0.640 1
ATOM 160 O O . ASN 25 25 ? A 15.153 1.707 2.229 1 1 A ASN 0.640 1
ATOM 161 C CB . ASN 25 25 ? A 14.584 1.551 -0.543 1 1 A ASN 0.640 1
ATOM 162 C CG . ASN 25 25 ? A 15.959 0.896 -0.589 1 1 A ASN 0.640 1
ATOM 163 O OD1 . ASN 25 25 ? A 16.137 -0.272 -0.229 1 1 A ASN 0.640 1
ATOM 164 N ND2 . ASN 25 25 ? A 16.961 1.676 -1.057 1 1 A ASN 0.640 1
ATOM 165 N N . LYS 26 26 ? A 13.397 0.411 2.867 1 1 A LYS 0.700 1
ATOM 166 C CA . LYS 26 26 ? A 13.692 0.221 4.272 1 1 A LYS 0.700 1
ATOM 167 C C . LYS 26 26 ? A 13.288 1.371 5.172 1 1 A LYS 0.700 1
ATOM 168 O O . LYS 26 26 ? A 13.433 1.297 6.393 1 1 A LYS 0.700 1
ATOM 169 C CB . LYS 26 26 ? A 15.149 -0.204 4.527 1 1 A LYS 0.700 1
ATOM 170 C CG . LYS 26 26 ? A 15.503 -1.487 3.776 1 1 A LYS 0.700 1
ATOM 171 C CD . LYS 26 26 ? A 16.939 -1.942 4.026 1 1 A LYS 0.700 1
ATOM 172 C CE . LYS 26 26 ? A 17.228 -3.327 3.458 1 1 A LYS 0.700 1
ATOM 173 N NZ . LYS 26 26 ? A 17.200 -3.272 1.981 1 1 A LYS 0.700 1
ATOM 174 N N . VAL 27 27 ? A 12.669 2.418 4.605 1 1 A VAL 0.790 1
ATOM 175 C CA . VAL 27 27 ? A 12.146 3.532 5.364 1 1 A VAL 0.790 1
ATOM 176 C C . VAL 27 27 ? A 10.666 3.660 5.093 1 1 A VAL 0.790 1
ATOM 177 O O . VAL 27 27 ? A 10.221 3.650 3.946 1 1 A VAL 0.790 1
ATOM 178 C CB . VAL 27 27 ? A 12.844 4.832 4.998 1 1 A VAL 0.790 1
ATOM 179 C CG1 . VAL 27 27 ? A 12.286 6.014 5.817 1 1 A VAL 0.790 1
ATOM 180 C CG2 . VAL 27 27 ? A 14.359 4.693 5.241 1 1 A VAL 0.790 1
ATOM 181 N N . CYS 28 28 ? A 9.840 3.776 6.151 1 1 A CYS 0.800 1
ATOM 182 C CA . CYS 28 28 ? A 8.435 4.089 5.997 1 1 A CYS 0.800 1
ATOM 183 C C . CYS 28 28 ? A 8.236 5.553 5.652 1 1 A CYS 0.800 1
ATOM 184 O O . CYS 28 28 ? A 8.702 6.449 6.359 1 1 A CYS 0.800 1
ATOM 185 C CB . CYS 28 28 ? A 7.637 3.722 7.261 1 1 A CYS 0.800 1
ATOM 186 S SG . CYS 28 28 ? A 7.831 1.964 7.668 1 1 A CYS 0.800 1
ATOM 187 N N . TYR 29 29 ? A 7.547 5.821 4.533 1 1 A TYR 0.780 1
ATOM 188 C CA . TYR 29 29 ? A 7.464 7.130 3.923 1 1 A TYR 0.780 1
ATOM 189 C C . TYR 29 29 ? A 6.042 7.393 3.512 1 1 A TYR 0.780 1
ATOM 190 O O . TYR 29 29 ? A 5.334 6.472 3.121 1 1 A TYR 0.780 1
ATOM 191 C CB . TYR 29 29 ? A 8.290 7.159 2.606 1 1 A TYR 0.780 1
ATOM 192 C CG . TYR 29 29 ? A 9.623 7.798 2.765 1 1 A TYR 0.780 1
ATOM 193 C CD1 . TYR 29 29 ? A 9.713 9.189 2.797 1 1 A TYR 0.780 1
ATOM 194 C CD2 . TYR 29 29 ? A 10.798 7.049 2.807 1 1 A TYR 0.780 1
ATOM 195 C CE1 . TYR 29 29 ? A 10.954 9.825 2.901 1 1 A TYR 0.780 1
ATOM 196 C CE2 . TYR 29 29 ? A 12.044 7.685 2.886 1 1 A TYR 0.780 1
ATOM 197 C CZ . TYR 29 29 ? A 12.121 9.074 2.948 1 1 A TYR 0.780 1
ATOM 198 O OH . TYR 29 29 ? A 13.358 9.729 3.055 1 1 A TYR 0.780 1
ATOM 199 N N . TYR 30 30 ? A 5.621 8.678 3.536 1 1 A TYR 0.480 1
ATOM 200 C CA . TYR 30 30 ? A 4.377 9.088 2.929 1 1 A TYR 0.480 1
ATOM 201 C C . TYR 30 30 ? A 4.541 10.478 2.296 1 1 A TYR 0.480 1
ATOM 202 O O . TYR 30 30 ? A 4.857 11.395 2.996 1 1 A TYR 0.480 1
ATOM 203 C CB . TYR 30 30 ? A 3.261 9.205 3.993 1 1 A TYR 0.480 1
ATOM 204 C CG . TYR 30 30 ? A 1.881 9.340 3.410 1 1 A TYR 0.480 1
ATOM 205 C CD1 . TYR 30 30 ? A 1.549 8.930 2.108 1 1 A TYR 0.480 1
ATOM 206 C CD2 . TYR 30 30 ? A 0.866 9.880 4.209 1 1 A TYR 0.480 1
ATOM 207 C CE1 . TYR 30 30 ? A 0.243 9.043 1.631 1 1 A TYR 0.480 1
ATOM 208 C CE2 . TYR 30 30 ? A -0.445 9.992 3.732 1 1 A TYR 0.480 1
ATOM 209 C CZ . TYR 30 30 ? A -0.752 9.576 2.438 1 1 A TYR 0.480 1
ATOM 210 O OH . TYR 30 30 ? A -2.049 9.709 1.920 1 1 A TYR 0.480 1
ATOM 211 N N . ASN 31 31 ? A 4.318 10.611 0.955 1 1 A ASN 0.460 1
ATOM 212 C CA . ASN 31 31 ? A 4.179 11.876 0.194 1 1 A ASN 0.460 1
ATOM 213 C C . ASN 31 31 ? A 5.119 13.109 0.333 1 1 A ASN 0.460 1
ATOM 214 O O . ASN 31 31 ? A 5.721 13.316 1.385 1 1 A ASN 0.460 1
ATOM 215 C CB . ASN 31 31 ? A 2.863 12.599 0.384 1 1 A ASN 0.460 1
ATOM 216 C CG . ASN 31 31 ? A 1.702 11.704 0.125 1 1 A ASN 0.460 1
ATOM 217 O OD1 . ASN 31 31 ? A 1.724 10.726 -0.631 1 1 A ASN 0.460 1
ATOM 218 N ND2 . ASN 31 31 ? A 0.618 12.118 0.809 1 1 A ASN 0.460 1
ATOM 219 O OXT . ASN 31 31 ? A 5.238 13.839 -0.679 1 1 A ASN 0.460 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.692
2 1 3 0.704
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 2 SER 1 0.400
2 1 A 3 ILE 1 0.490
3 1 A 4 PRO 1 0.810
4 1 A 5 CYS 1 0.790
5 1 A 6 ALA 1 0.770
6 1 A 7 GLU 1 0.750
7 1 A 8 SER 1 0.690
8 1 A 9 CYS 1 0.740
9 1 A 10 VAL 1 0.700
10 1 A 11 TYR 1 0.610
11 1 A 12 ILE 1 0.630
12 1 A 13 PRO 1 0.720
13 1 A 14 CYS 1 0.750
14 1 A 15 ILE 1 0.690
15 1 A 16 THR 1 0.690
16 1 A 17 GLY 1 0.710
17 1 A 18 ILE 1 0.590
18 1 A 19 ALA 1 0.680
19 1 A 20 GLY 1 0.770
20 1 A 21 CYS 1 0.800
21 1 A 22 SER 1 0.790
22 1 A 23 CYS 1 0.800
23 1 A 24 LYS 1 0.740
24 1 A 25 ASN 1 0.640
25 1 A 26 LYS 1 0.700
26 1 A 27 VAL 1 0.790
27 1 A 28 CYS 1 0.800
28 1 A 29 TYR 1 0.780
29 1 A 30 TYR 1 0.480
30 1 A 31 ASN 1 0.460
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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