data_SMR-488475db8db7a0f06e71dd627ad1b189_1
_entry.id SMR-488475db8db7a0f06e71dd627ad1b189_1
_struct.entry_id SMR-488475db8db7a0f06e71dd627ad1b189_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - A0A1U9T922/ A0A1U9T922_ECOLX, Spanin from lambdoid prophage Rac, outer membrane subunit
  - A0A2H4ZI34/ A0A2H4ZI34_KLEPN, Putative lipoprotein
  - A0A7L5X517/ A0A7L5X517_9ESCH, Prophage lysis lipoprotein RzoD
  - A0A8H9AGB3/ A0A8H9AGB3_SHIBO, Spanin from lambdoid prophage Rac, outer membrane subunit
  - A0AAD2S129/ A0AAD2S129_ECOLX, Prophage lysis lipoprotein RzoD
  - P58042/ RZOR_ECOLI, Prophage outer membrane lipoprotein RzoR

Estimated model accuracy of this model is 0.149, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries A0A1U9T922, A0A2H4ZI34, A0A7L5X517, A0A8H9AGB3, A0AAD2S129, P58042'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/d18ba38/base/mmcif_ma-core.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2025-04.4
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.4.1 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.3.1
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.8.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.14.1 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 7847.169 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP RZOR_ECOLI P58042 1
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
'Prophage outer membrane lipoprotein RzoR'
2 1 UNP A0A2H4ZI34_KLEPN A0A2H4ZI34 1
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
'Putative lipoprotein'
3 1 UNP A0A1U9T922_ECOLX A0A1U9T922 1
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
'Spanin from lambdoid prophage Rac, outer membrane subunit'
4 1 UNP A0A8H9AGB3_SHIBO A0A8H9AGB3 1
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
'Spanin from lambdoid prophage Rac, outer membrane subunit'
5 1 UNP A0AAD2S129_ECOLX A0AAD2S129 1
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
'Prophage lysis lipoprotein RzoD'
6 1 UNP A0A7L5X517_9ESCH A0A7L5X517 1
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
'Prophage lysis lipoprotein RzoD'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 61 1 61
2 2 1 61 1 61
3 3 1 61 1 61
4 4 1 61 1 61
5 5 1 61 1 61
6 6 1 61 1 61
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
1 UNP . RZOR_ECOLI P58042 . 1 61 83333 'Escherichia coli (strain K12)'
2001-04-27 226225EE4DE474AA
1 UNP . A0A2H4ZI34_KLEPN A0A2H4ZI34 . 1 61 573 'Klebsiella pneumoniae'
2018-02-28 226225EE4DE474AA
1 UNP . A0A1U9T922_ECOLX A0A1U9T922 . 1 61 562 'Escherichia coli' 2017-06-07
226225EE4DE474AA
1 UNP . A0A8H9AGB3_SHIBO A0A8H9AGB3 . 1 61 621 'Shigella boydii' 2022-01-19
226225EE4DE474AA
1 UNP . A0AAD2S129_ECOLX A0AAD2S129 . 1 61 217992 'Escherichia coli O6'
2024-05-29 226225EE4DE474AA
1 UNP . A0A7L5X517_9ESCH A0A7L5X517 . 1 61 1499973 'Escherichia marmotae'
2021-04-07 226225EE4DE474AA
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no C
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET .
1 2 ARG .
1 3 LYS .
1 4 LEU .
1 5 LYS .
1 6 MET .
1 7 MET .
1 8 LEU .
1 9 CYS .
1 10 VAL .
1 11 MET .
1 12 MET .
1 13 LEU .
1 14 PRO .
1 15 LEU .
1 16 VAL .
1 17 VAL .
1 18 VAL .
1 19 GLY .
1 20 CYS .
1 21 THR .
1 22 SER .
1 23 LYS .
1 24 GLN .
1 25 SER .
1 26 VAL .
1 27 SER .
1 28 GLN .
1 29 CYS .
1 30 VAL .
1 31 LYS .
1 32 PRO .
1 33 PRO .
1 34 PRO .
1 35 PRO .
1 36 PRO .
1 37 ALA .
1 38 TRP .
1 39 ILE .
1 40 MET .
1 41 GLN .
1 42 PRO .
1 43 PRO .
1 44 PRO .
1 45 ASP .
1 46 TRP .
1 47 GLN .
1 48 THR .
1 49 PRO .
1 50 LEU .
1 51 ASN .
1 52 GLY .
1 53 ILE .
1 54 ILE .
1 55 SER .
1 56 PRO .
1 57 SER .
1 58 GLY .
1 59 ASN .
1 60 ASP .
1 61 TRP .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 MET 1 ? ? ? C .
A 1 2 ARG 2 ? ? ? C .
A 1 3 LYS 3 ? ? ? C .
A 1 4 LEU 4 ? ? ? C .
A 1 5 LYS 5 ? ? ? C .
A 1 6 MET 6 ? ? ? C .
A 1 7 MET 7 ? ? ? C .
A 1 8 LEU 8 ? ? ? C .
A 1 9 CYS 9 ? ? ? C .
A 1 10 VAL 10 ? ? ? C .
A 1 11 MET 11 ? ? ? C .
A 1 12 MET 12 ? ? ? C .
A 1 13 LEU 13 ? ? ? C .
A 1 14 PRO 14 ? ? ? C .
A 1 15 LEU 15 ? ? ? C .
A 1 16 VAL 16 ? ? ? C .
A 1 17 VAL 17 ? ? ? C .
A 1 18 VAL 18 ? ? ? C .
A 1 19 GLY 19 ? ? ? C .
A 1 20 CYS 20 20 CYS CYS C .
A 1 21 THR 21 21 THR THR C .
A 1 22 SER 22 22 SER SER C .
A 1 23 LYS 23 23 LYS LYS C .
A 1 24 GLN 24 24 GLN GLN C .
A 1 25 SER 25 25 SER SER C .
A 1 26 VAL 26 26 VAL VAL C .
A 1 27 SER 27 27 SER SER C .
A 1 28 GLN 28 28 GLN GLN C .
A 1 29 CYS 29 29 CYS CYS C .
A 1 30 VAL 30 30 VAL VAL C .
A 1 31 LYS 31 31 LYS LYS C .
A 1 32 PRO 32 32 PRO PRO C .
A 1 33 PRO 33 33 PRO PRO C .
A 1 34 PRO 34 34 PRO PRO C .
A 1 35 PRO 35 35 PRO PRO C .
A 1 36 PRO 36 36 PRO PRO C .
A 1 37 ALA 37 37 ALA ALA C .
A 1 38 TRP 38 38 TRP TRP C .
A 1 39 ILE 39 39 ILE ILE C .
A 1 40 MET 40 40 MET MET C .
A 1 41 GLN 41 ? ? ? C .
A 1 42 PRO 42 ? ? ? C .
A 1 43 PRO 43 ? ? ? C .
A 1 44 PRO 44 ? ? ? C .
A 1 45 ASP 45 ? ? ? C .
A 1 46 TRP 46 ? ? ? C .
A 1 47 GLN 47 ? ? ? C .
A 1 48 THR 48 ? ? ? C .
A 1 49 PRO 49 ? ? ? C .
A 1 50 LEU 50 ? ? ? C .
A 1 51 ASN 51 ? ? ? C .
A 1 52 GLY 52 ? ? ? C .
A 1 53 ILE 53 ? ? ? C .
A 1 54 ILE 54 ? ? ? C .
A 1 55 SER 55 ? ? ? C .
A 1 56 PRO 56 ? ? ? C .
A 1 57 SER 57 ? ? ? C .
A 1 58 GLY 58 ? ? ? C .
A 1 59 ASN 59 ? ? ? C .
A 1 60 ASP 60 ? ? ? C .
A 1 61 TRP 61 ? ? ? C .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'TRAN PROTEIN {PDB ID=3zbi, label_asym_id=C, auth_asym_id=C, SMTL ID=3zbi.1.C}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 3zbi, label_asym_id=C'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2025-05-07
6 PDB https://www.wwpdb.org . 2025-05-02
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A C 3 1 C
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 MRSLLLMGVLLISACSSGHKPPPEPDWSNTVPVNKTIPVDTQGGRNES
MRSLLLMGVLLISACSSGHKPPPEPDWSNTVPVNKTIPVDTQGGRNES
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 4 29
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 3zbi 2024-05-08
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 61
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 61 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 0.001 38.462
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1 MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
2 1 2 --------LLLMGVLLISACSSGH------KPPPEPDWSN---------------------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 3zbi.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_id
_ma_model_list.model_group_id
_ma_model_list.model_name
_ma_model_list.model_group_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 1 1 'model 1' . 4 'Homology model' .
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . CYS 20 20 ? A -43.886 1.731 -44.618 1 1 C CYS 0.410 1
ATOM 2 C CA . CYS 20 20 ? A -43.367 2.115 -43.257 1 1 C CYS 0.410 1
ATOM 3 C C . CYS 20 20 ? A -43.582 0.953 -42.318 1 1 C CYS 0.410 1
ATOM 4 O O . CYS 20 20 ? A -43.380 -0.185 -42.737 1 1 C CYS 0.410 1
ATOM 5 C CB . CYS 20 20 ? A -43.984 3.461 -42.740 1 1 C CYS 0.410 1
ATOM 6 S SG . CYS 20 20 ? A -42.907 4.321 -41.534 1 1 C CYS 0.410 1
ATOM 7 N N . THR 21 21 ? A -44.019 1.201 -41.076 1 1 C THR 0.580 1
ATOM 8 C CA . THR 21 21 ? A -44.374 0.213 -40.077 1 1 C THR 0.580 1
ATOM 9 C C . THR 21 21 ? A -45.707 -0.363 -40.407 1 1 C THR 0.580 1
ATOM 10 O O . THR 21 21 ? A -46.678 0.365 -40.676 1 1 C THR 0.580 1
ATOM 11 C CB . THR 21 21 ? A -44.399 0.813 -38.682 1 1 C THR 0.580 1
ATOM 12 O OG1 . THR 21 21 ? A -43.128 1.379 -38.421 1 1 C THR 0.580 1
ATOM 13 C CG2 . THR 21 21 ? A -44.626 -0.242 -37.601 1 1 C THR 0.580 1
ATOM 14 N N . SER 22 22 ? A -45.807 -1.691 -40.449 1 1 C SER 0.640 1
ATOM 15 C CA . SER 22 22 ? A -47.048 -2.378 -40.651 1 1 C SER 0.640 1
ATOM 16 C C . SER 22 22 ? A -47.773 -2.384 -39.354 1 1 C SER 0.640 1
ATOM 17 O O . SER 22 22 ? A -47.213 -2.176 -38.291 1 1 C SER 0.640 1
ATOM 18 C CB . SER 22 22 ? A -46.867 -3.861 -41.057 1 1 C SER 0.640 1
ATOM 19 O OG . SER 22 22 ? A -45.958 -4.504 -40.155 1 1 C SER 0.640 1
ATOM 20 N N . LYS 23 23 ? A -49.069 -2.647 -39.459 1 1 C LYS 0.730 1
ATOM 21 C CA . LYS 23 23 ? A -49.854 -2.777 -38.285 1 1 C LYS 0.730 1
ATOM 22 C C . LYS 23 23 ? A -49.291 -3.845 -37.315 1 1 C LYS 0.730 1
ATOM 23 O O . LYS 23 23 ? A -48.950 -3.486 -36.195 1 1 C LYS 0.730 1
ATOM 24 C CB . LYS 23 23 ? A -51.344 -2.742 -38.751 1 1 C LYS 0.730 1
ATOM 25 C CG . LYS 23 23 ? A -51.790 -1.382 -39.329 1 1 C LYS 0.730 1
ATOM 26 C CD . LYS 23 23 ? A -53.321 -1.402 -39.338 1 1 C LYS 0.730 1
ATOM 27 C CE . LYS 23 23 ? A -53.930 -0.169 -39.981 1 1 C LYS 0.730 1
ATOM 28 N NZ . LYS 23 23 ? A -55.383 -0.366 -40.145 1 1 C LYS 0.730 1
ATOM 29 N N . GLN 24 24 ? A -49.130 -5.179 -37.637 1 1 C GLN 0.540 1
ATOM 30 C CA . GLN 24 24 ? A -48.686 -6.292 -36.795 1 1 C GLN 0.540 1
ATOM 31 C C . GLN 24 24 ? A -47.457 -6.107 -35.857 1 1 C GLN 0.540 1
ATOM 32 O O . GLN 24 24 ? A -47.299 -6.848 -34.902 1 1 C GLN 0.540 1
ATOM 33 C CB . GLN 24 24 ? A -48.430 -7.560 -37.680 1 1 C GLN 0.540 1
ATOM 34 C CG . GLN 24 24 ? A -47.203 -7.348 -38.597 1 1 C GLN 0.540 1
ATOM 35 C CD . GLN 24 24 ? A -46.998 -8.467 -39.608 1 1 C GLN 0.540 1
ATOM 36 O OE1 . GLN 24 24 ? A -47.315 -9.638 -39.381 1 1 C GLN 0.540 1
ATOM 37 N NE2 . GLN 24 24 ? A -46.446 -8.106 -40.788 1 1 C GLN 0.540 1
ATOM 38 N N . SER 25 25 ? A -46.606 -5.086 -36.133 1 1 C SER 0.300 1
ATOM 39 C CA . SER 25 25 ? A -45.501 -4.567 -35.308 1 1 C SER 0.300 1
ATOM 40 C C . SER 25 25 ? A -45.913 -4.058 -33.939 1 1 C SER 0.300 1
ATOM 41 O O . SER 25 25 ? A -45.070 -3.989 -33.032 1 1 C SER 0.300 1
ATOM 42 C CB . SER 25 25 ? A -44.866 -3.348 -36.008 1 1 C SER 0.300 1
ATOM 43 O OG . SER 25 25 ? A -44.304 -3.721 -37.267 1 1 C SER 0.300 1
ATOM 44 N N . VAL 26 26 ? A -47.184 -3.668 -33.738 1 1 C VAL 0.290 1
ATOM 45 C CA . VAL 26 26 ? A -47.704 -3.204 -32.442 1 1 C VAL 0.290 1
ATOM 46 C C . VAL 26 26 ? A -48.417 -4.418 -31.748 1 1 C VAL 0.290 1
ATOM 47 O O . VAL 26 26 ? A -48.970 -4.234 -30.634 1 1 C VAL 0.290 1
ATOM 48 C CB . VAL 26 26 ? A -48.535 -1.870 -32.628 1 1 C VAL 0.290 1
ATOM 49 C CG1 . VAL 26 26 ? A -49.420 -1.383 -31.439 1 1 C VAL 0.290 1
ATOM 50 C CG2 . VAL 26 26 ? A -47.775 -0.682 -33.299 1 1 C VAL 0.290 1
ATOM 51 N N . SER 27 27 ? A -48.438 -5.675 -32.290 1 1 C SER 0.290 1
ATOM 52 C CA . SER 27 27 ? A -49.094 -6.922 -31.810 1 1 C SER 0.290 1
ATOM 53 C C . SER 27 27 ? A -50.388 -7.308 -32.548 1 1 C SER 0.290 1
ATOM 54 O O . SER 27 27 ? A -50.659 -6.867 -33.680 1 1 C SER 0.290 1
ATOM 55 C CB . SER 27 27 ? A -49.281 -7.032 -30.242 1 1 C SER 0.290 1
ATOM 56 O OG . SER 27 27 ? A -49.567 -8.344 -29.738 1 1 C SER 0.290 1
ATOM 57 N N . GLN 28 28 ? A -51.230 -8.178 -31.969 1 1 C GLN 0.320 1
ATOM 58 C CA . GLN 28 28 ? A -52.522 -8.619 -32.468 1 1 C GLN 0.320 1
ATOM 59 C C . GLN 28 28 ? A -53.642 -7.591 -32.441 1 1 C GLN 0.320 1
ATOM 60 O O . GLN 28 28 ? A -54.548 -7.661 -33.250 1 1 C GLN 0.320 1
ATOM 61 C CB . GLN 28 28 ? A -53.024 -9.837 -31.673 1 1 C GLN 0.320 1
ATOM 62 C CG . GLN 28 28 ? A -52.168 -11.088 -31.942 1 1 C GLN 0.320 1
ATOM 63 C CD . GLN 28 28 ? A -52.663 -12.245 -31.084 1 1 C GLN 0.320 1
ATOM 64 O OE1 . GLN 28 28 ? A -53.256 -12.067 -30.022 1 1 C GLN 0.320 1
ATOM 65 N NE2 . GLN 28 28 ? A -52.412 -13.490 -31.549 1 1 C GLN 0.320 1
ATOM 66 N N . CYS 29 29 ? A -53.583 -6.602 -31.517 1 1 C CYS 0.320 1
ATOM 67 C CA . CYS 29 29 ? A -54.626 -5.590 -31.296 1 1 C CYS 0.320 1
ATOM 68 C C . CYS 29 29 ? A -54.696 -4.586 -32.390 1 1 C CYS 0.320 1
ATOM 69 O O . CYS 29 29 ? A -55.594 -3.759 -32.518 1 1 C CYS 0.320 1
ATOM 70 C CB . CYS 29 29 ? A -54.325 -4.798 -30.001 1 1 C CYS 0.320 1
ATOM 71 S SG . CYS 29 29 ? A -54.619 -5.832 -28.540 1 1 C CYS 0.320 1
ATOM 72 N N . VAL 30 30 ? A -53.645 -4.612 -33.167 1 1 C VAL 0.320 1
ATOM 73 C CA . VAL 30 30 ? A -53.427 -3.708 -34.192 1 1 C VAL 0.320 1
ATOM 74 C C . VAL 30 30 ? A -53.998 -4.062 -35.543 1 1 C VAL 0.320 1
ATOM 75 O O . VAL 30 30 ? A -54.532 -3.244 -36.290 1 1 C VAL 0.320 1
ATOM 76 C CB . VAL 30 30 ? A -51.977 -3.862 -34.399 1 1 C VAL 0.320 1
ATOM 77 C CG1 . VAL 30 30 ? A -51.659 -2.660 -35.274 1 1 C VAL 0.320 1
ATOM 78 C CG2 . VAL 30 30 ? A -51.139 -3.795 -33.147 1 1 C VAL 0.320 1
ATOM 79 N N . LYS 31 31 ? A -53.854 -5.359 -35.901 1 1 C LYS 0.720 1
ATOM 80 C CA . LYS 31 31 ? A -54.654 -5.953 -36.936 1 1 C LYS 0.720 1
ATOM 81 C C . LYS 31 31 ? A -56.078 -5.859 -36.419 1 1 C LYS 0.720 1
ATOM 82 O O . LYS 31 31 ? A -56.269 -6.245 -35.273 1 1 C LYS 0.720 1
ATOM 83 C CB . LYS 31 31 ? A -54.286 -7.434 -37.183 1 1 C LYS 0.720 1
ATOM 84 C CG . LYS 31 31 ? A -55.169 -8.038 -38.279 1 1 C LYS 0.720 1
ATOM 85 C CD . LYS 31 31 ? A -54.777 -9.478 -38.601 1 1 C LYS 0.720 1
ATOM 86 C CE . LYS 31 31 ? A -55.655 -10.085 -39.694 1 1 C LYS 0.720 1
ATOM 87 N NZ . LYS 31 31 ? A -55.208 -11.466 -39.963 1 1 C LYS 0.720 1
ATOM 88 N N . PRO 32 32 ? A -57.075 -5.313 -37.112 1 1 C PRO 0.820 1
ATOM 89 C CA . PRO 32 32 ? A -58.316 -4.999 -36.429 1 1 C PRO 0.820 1
ATOM 90 C C . PRO 32 32 ? A -58.997 -6.243 -35.923 1 1 C PRO 0.820 1
ATOM 91 O O . PRO 32 32 ? A -58.784 -7.277 -36.570 1 1 C PRO 0.820 1
ATOM 92 C CB . PRO 32 32 ? A -59.166 -4.298 -37.487 1 1 C PRO 0.820 1
ATOM 93 C CG . PRO 32 32 ? A -58.159 -3.650 -38.439 1 1 C PRO 0.820 1
ATOM 94 C CD . PRO 32 32 ? A -56.883 -4.488 -38.300 1 1 C PRO 0.820 1
ATOM 95 N N . PRO 33 33 ? A -59.703 -6.211 -34.793 1 1 C PRO 0.810 1
ATOM 96 C CA . PRO 33 33 ? A -59.955 -7.399 -33.998 1 1 C PRO 0.810 1
ATOM 97 C C . PRO 33 33 ? A -60.653 -8.496 -34.787 1 1 C PRO 0.810 1
ATOM 98 O O . PRO 33 33 ? A -61.421 -8.118 -35.678 1 1 C PRO 0.810 1
ATOM 99 C CB . PRO 33 33 ? A -60.816 -6.920 -32.815 1 1 C PRO 0.810 1
ATOM 100 C CG . PRO 33 33 ? A -60.626 -5.399 -32.744 1 1 C PRO 0.810 1
ATOM 101 C CD . PRO 33 33 ? A -60.208 -4.987 -34.156 1 1 C PRO 0.810 1
ATOM 102 N N . PRO 34 34 ? A -60.470 -9.793 -34.552 1 1 C PRO 0.800 1
ATOM 103 C CA . PRO 34 34 ? A -61.336 -10.844 -35.081 1 1 C PRO 0.800 1
ATOM 104 C C . PRO 34 34 ? A -62.830 -10.508 -34.899 1 1 C PRO 0.800 1
ATOM 105 O O . PRO 34 34 ? A -63.237 -10.509 -33.742 1 1 C PRO 0.800 1
ATOM 106 C CB . PRO 34 34 ? A -60.948 -12.118 -34.295 1 1 C PRO 0.800 1
ATOM 107 C CG . PRO 34 34 ? A -59.605 -11.807 -33.617 1 1 C PRO 0.800 1
ATOM 108 C CD . PRO 34 34 ? A -59.555 -10.284 -33.528 1 1 C PRO 0.800 1
ATOM 109 N N . PRO 35 35 ? A -63.689 -10.239 -35.875 1 1 C PRO 0.880 1
ATOM 110 C CA . PRO 35 35 ? A -64.999 -9.693 -35.578 1 1 C PRO 0.880 1
ATOM 111 C C . PRO 35 35 ? A -65.957 -10.882 -35.456 1 1 C PRO 0.880 1
ATOM 112 O O . PRO 35 35 ? A -65.985 -11.692 -36.371 1 1 C PRO 0.880 1
ATOM 113 C CB . PRO 35 35 ? A -65.289 -8.739 -36.750 1 1 C PRO 0.880 1
ATOM 114 C CG . PRO 35 35 ? A -64.444 -9.259 -37.925 1 1 C PRO 0.880 1
ATOM 115 C CD . PRO 35 35 ? A -63.361 -10.151 -37.292 1 1 C PRO 0.880 1
ATOM 116 N N . PRO 36 36 ? A -66.698 -11.077 -34.358 1 1 C PRO 0.750 1
ATOM 117 C CA . PRO 36 36 ? A -67.729 -12.114 -34.255 1 1 C PRO 0.750 1
ATOM 118 C C . PRO 36 36 ? A -68.782 -12.099 -35.368 1 1 C PRO 0.750 1
ATOM 119 O O . PRO 36 36 ? A -68.900 -11.124 -36.109 1 1 C PRO 0.750 1
ATOM 120 C CB . PRO 36 36 ? A -68.373 -11.887 -32.866 1 1 C PRO 0.750 1
ATOM 121 C CG . PRO 36 36 ? A -67.413 -10.974 -32.089 1 1 C PRO 0.750 1
ATOM 122 C CD . PRO 36 36 ? A -66.624 -10.237 -33.166 1 1 C PRO 0.750 1
ATOM 123 N N . ALA 37 37 ? A -69.595 -13.172 -35.496 1 1 C ALA 0.950 1
ATOM 124 C CA . ALA 37 37 ? A -70.761 -13.206 -36.364 1 1 C ALA 0.950 1
ATOM 125 C C . ALA 37 37 ? A -71.752 -12.073 -36.101 1 1 C ALA 0.950 1
ATOM 126 O O . ALA 37 37 ? A -72.322 -11.980 -35.009 1 1 C ALA 0.950 1
ATOM 127 C CB . ALA 37 37 ? A -71.504 -14.552 -36.195 1 1 C ALA 0.950 1
ATOM 128 N N . TRP 38 38 ? A -71.941 -11.168 -37.080 1 1 C TRP 0.760 1
ATOM 129 C CA . TRP 38 38 ? A -72.926 -10.093 -37.009 1 1 C TRP 0.760 1
ATOM 130 C C . TRP 38 38 ? A -74.144 -10.422 -37.853 1 1 C TRP 0.760 1
ATOM 131 O O . TRP 38 38 ? A -75.202 -9.822 -37.724 1 1 C TRP 0.760 1
ATOM 132 C CB . TRP 38 38 ? A -72.288 -8.784 -37.570 1 1 C TRP 0.760 1
ATOM 133 C CG . TRP 38 38 ? A -72.174 -7.627 -36.588 1 1 C TRP 0.760 1
ATOM 134 C CD1 . TRP 38 38 ? A -72.555 -6.332 -36.772 1 1 C TRP 0.760 1
ATOM 135 C CD2 . TRP 38 38 ? A -71.662 -7.718 -35.247 1 1 C TRP 0.760 1
ATOM 136 N NE1 . TRP 38 38 ? A -72.327 -5.592 -35.629 1 1 C TRP 0.760 1
ATOM 137 C CE2 . TRP 38 38 ? A -71.797 -6.432 -34.675 1 1 C TRP 0.760 1
ATOM 138 C CE3 . TRP 38 38 ? A -71.135 -8.773 -34.514 1 1 C TRP 0.760 1
ATOM 139 C CZ2 . TRP 38 38 ? A -71.415 -6.201 -33.359 1 1 C TRP 0.760 1
ATOM 140 C CZ3 . TRP 38 38 ? A -70.815 -8.555 -33.172 1 1 C TRP 0.760 1
ATOM 141 C CH2 . TRP 38 38 ? A -70.943 -7.283 -32.604 1 1 C TRP 0.760 1
ATOM 142 N N . ILE 39 39 ? A -73.959 -11.380 -38.779 1 1 C ILE 0.520 1
ATOM 143 C CA . ILE 39 39 ? A -75.006 -11.878 -39.657 1 1 C ILE 0.520 1
ATOM 144 C C . ILE 39 39 ? A -75.976 -12.816 -38.949 1 1 C ILE 0.520 1
ATOM 145 O O . ILE 39 39 ? A -77.200 -12.569 -38.976 1 1 C ILE 0.520 1
ATOM 146 C CB . ILE 39 39 ? A -74.365 -12.631 -40.832 1 1 C ILE 0.520 1
ATOM 147 C CG1 . ILE 39 39 ? A -73.537 -11.670 -41.723 1 1 C ILE 0.520 1
ATOM 148 C CG2 . ILE 39 39 ? A -75.464 -13.349 -41.657 1 1 C ILE 0.520 1
ATOM 149 C CD1 . ILE 39 39 ? A -72.693 -12.400 -42.779 1 1 C ILE 0.520 1
ATOM 150 N N . MET 40 40 ? A -75.488 -13.908 -38.351 1 1 C MET 0.510 1
ATOM 151 C CA . MET 40 40 ? A -76.245 -14.818 -37.515 1 1 C MET 0.510 1
ATOM 152 C C . MET 40 40 ? A -76.367 -14.328 -36.046 1 1 C MET 0.510 1
ATOM 153 O O . MET 40 40 ? A -75.590 -13.442 -35.621 1 1 C MET 0.510 1
ATOM 154 C CB . MET 40 40 ? A -75.592 -16.228 -37.436 1 1 C MET 0.510 1
ATOM 155 C CG . MET 40 40 ? A -75.528 -17.042 -38.743 1 1 C MET 0.510 1
ATOM 156 S SD . MET 40 40 ? A -74.713 -18.667 -38.545 1 1 C MET 0.510 1
ATOM 157 C CE . MET 40 40 ? A -75.963 -19.457 -37.482 1 1 C MET 0.510 1
ATOM 158 O OXT . MET 40 40 ? A -77.235 -14.912 -35.333 1 1 C MET 0.510 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.584
2 1 3 0.149
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 20 CYS 1 0.410
2 1 A 21 THR 1 0.580
3 1 A 22 SER 1 0.640
4 1 A 23 LYS 1 0.730
5 1 A 24 GLN 1 0.540
6 1 A 25 SER 1 0.300
7 1 A 26 VAL 1 0.290
8 1 A 27 SER 1 0.290
9 1 A 28 GLN 1 0.320
10 1 A 29 CYS 1 0.320
11 1 A 30 VAL 1 0.320
12 1 A 31 LYS 1 0.720
13 1 A 32 PRO 1 0.820
14 1 A 33 PRO 1 0.810
15 1 A 34 PRO 1 0.800
16 1 A 35 PRO 1 0.880
17 1 A 36 PRO 1 0.750
18 1 A 37 ALA 1 0.950
19 1 A 38 TRP 1 0.760
20 1 A 39 ILE 1 0.520
21 1 A 40 MET 1 0.510
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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