data_SMR-c898f2cc95bf39f9fa6ccf81e9ec17a3_1
_entry.id SMR-c898f2cc95bf39f9fa6ccf81e9ec17a3_1
_struct.entry_id SMR-c898f2cc95bf39f9fa6ccf81e9ec17a3_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - P83251/ TOP2D_OXYTA, M-oxotoxin-Ot2d

Estimated model accuracy of this model is 0.525, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries P83251'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/80e1e22/dist/mmcif_ma.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.7
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2025-06.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.5.0 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.4.0
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.10.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.14.1 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core'
MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 4815.566 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP TOP2D_OXYTA P83251 1 GKFSVFSKILRSIAKVFKGVGKVRKQFKTASDLDKNQ
M-oxotoxin-Ot2d
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 37 1 37
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
_ma_target_ref_db_details.is_primary
1 UNP . TOP2D_OXYTA P83251 . 1 37 666126
'Oxyopes takobius (Lynx spider) (Oxyopes foliiformis)' 2002-03-01
796487F9378405CA .
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A GKFSVFSKILRSIAKVFKGVGKVRKQFKTASDLDKNQ
GKFSVFSKILRSIAKVFKGVGKVRKQFKTASDLDKNQ
#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY .
1 2 LYS .
1 3 PHE .
1 4 SER .
1 5 VAL .
1 6 PHE .
1 7 SER .
1 8 LYS .
1 9 ILE .
1 10 LEU .
1 11 ARG .
1 12 SER .
1 13 ILE .
1 14 ALA .
1 15 LYS .
1 16 VAL .
1 17 PHE .
1 18 LYS .
1 19 GLY .
1 20 VAL .
1 21 GLY .
1 22 LYS .
1 23 VAL .
1 24 ARG .
1 25 LYS .
1 26 GLN .
1 27 PHE .
1 28 LYS .
1 29 THR .
1 30 ALA .
1 31 SER .
1 32 ASP .
1 33 LEU .
1 34 ASP .
1 35 LYS .
1 36 ASN .
1 37 GLN .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 GLY 1 ? ? ? A .
A 1 2 LYS 2 ? ? ? A .
A 1 3 PHE 3 ? ? ? A .
A 1 4 SER 4 ? ? ? A .
A 1 5 VAL 5 ? ? ? A .
A 1 6 PHE 6 6 PHE PHE A .
A 1 7 SER 7 7 SER SER A .
A 1 8 LYS 8 8 LYS LYS A .
A 1 9 ILE 9 9 ILE ILE A .
A 1 10 LEU 10 10 LEU LEU A .
A 1 11 ARG 11 11 ARG ARG A .
A 1 12 SER 12 12 SER SER A .
A 1 13 ILE 13 13 ILE ILE A .
A 1 14 ALA 14 14 ALA ALA A .
A 1 15 LYS 15 15 LYS LYS A .
A 1 16 VAL 16 16 VAL VAL A .
A 1 17 PHE 17 17 PHE PHE A .
A 1 18 LYS 18 18 LYS LYS A .
A 1 19 GLY 19 19 GLY GLY A .
A 1 20 VAL 20 20 VAL VAL A .
A 1 21 GLY 21 21 GLY GLY A .
A 1 22 LYS 22 22 LYS LYS A .
A 1 23 VAL 23 23 VAL VAL A .
A 1 24 ARG 24 24 ARG ARG A .
A 1 25 LYS 25 25 LYS LYS A .
A 1 26 GLN 26 26 GLN GLN A .
A 1 27 PHE 27 27 PHE PHE A .
A 1 28 LYS 28 28 LYS LYS A .
A 1 29 THR 29 29 THR THR A .
A 1 30 ALA 30 30 ALA ALA A .
A 1 31 SER 31 ? ? ? A .
A 1 32 ASP 32 ? ? ? A .
A 1 33 LEU 33 ? ? ? A .
A 1 34 ASP 34 ? ? ? A .
A 1 35 LYS 35 ? ? ? A .
A 1 36 ASN 36 ? ? ? A .
A 1 37 GLN 37 ? ? ? A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1
'GENERAL SECRETION PATHWAY PROTEIN F {PDB ID=2vma, label_asym_id=A, auth_asym_id=A, SMTL ID=2vma.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 2vma, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2025-06-25
6 PDB https://www.wwpdb.org . 2025-06-20
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1
;MGFAFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGD
YPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQASENLYPQ
;

;MGFAFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGD
YPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQASENLYPQ
;

#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 92 116
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 2vma 2024-10-09
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 37
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 37 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 15.000 20.000
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1 GKFSVFSKILRSIAKVFKGVGKVRKQFKTASDLDKNQ
2 1 2 -----LDSVLERLADYAENRQKMRSKLQQA-------
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 2vma.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 'model 1' 4 'Homology model' .
#
#
loop_
_ma_model_group.id
_ma_model_group.name
_ma_model_group.details
1 . .
#
#
loop_
_ma_model_group_link.group_id
_ma_model_group_link.model_id
1 1
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . PHE 6 6 ? A 34.789 21.419 55.922 1 1 A PHE 0.600 1
ATOM 2 C CA . PHE 6 6 ? A 33.595 21.632 55.012 1 1 A PHE 0.600 1
ATOM 3 C C . PHE 6 6 ? A 32.671 22.757 55.434 1 1 A PHE 0.600 1
ATOM 4 O O . PHE 6 6 ? A 32.373 23.617 54.618 1 1 A PHE 0.600 1
ATOM 5 C CB . PHE 6 6 ? A 32.797 20.314 54.829 1 1 A PHE 0.600 1
ATOM 6 C CG . PHE 6 6 ? A 33.605 19.334 54.024 1 1 A PHE 0.600 1
ATOM 7 C CD1 . PHE 6 6 ? A 33.846 19.572 52.660 1 1 A PHE 0.600 1
ATOM 8 C CD2 . PHE 6 6 ? A 34.119 18.169 54.612 1 1 A PHE 0.600 1
ATOM 9 C CE1 . PHE 6 6 ? A 34.580 18.656 51.896 1 1 A PHE 0.600 1
ATOM 10 C CE2 . PHE 6 6 ? A 34.852 17.252 53.849 1 1 A PHE 0.600 1
ATOM 11 C CZ . PHE 6 6 ? A 35.080 17.494 52.491 1 1 A PHE 0.600 1
ATOM 12 N N . SER 7 7 ? A 32.260 22.840 56.724 1 1 A SER 0.630 1
ATOM 13 C CA . SER 7 7 ? A 31.374 23.885 57.230 1 1 A SER 0.630 1
ATOM 14 C C . SER 7 7 ? A 31.832 25.314 56.980 1 1 A SER 0.630 1
ATOM 15 O O . SER 7 7 ? A 31.058 26.167 56.581 1 1 A SER 0.630 1
ATOM 16 C CB . SER 7 7 ? A 31.198 23.725 58.758 1 1 A SER 0.630 1
ATOM 17 O OG . SER 7 7 ? A 30.730 22.409 59.040 1 1 A SER 0.630 1
ATOM 18 N N . LYS 8 8 ? A 33.136 25.607 57.188 1 1 A LYS 0.620 1
ATOM 19 C CA . LYS 8 8 ? A 33.727 26.887 56.833 1 1 A LYS 0.620 1
ATOM 20 C C . LYS 8 8 ? A 33.804 27.192 55.336 1 1 A LYS 0.620 1
ATOM 21 O O . LYS 8 8 ? A 33.460 28.283 54.916 1 1 A LYS 0.620 1
ATOM 22 C CB . LYS 8 8 ? A 35.131 27.020 57.459 1 1 A LYS 0.620 1
ATOM 23 C CG . LYS 8 8 ? A 35.090 27.048 58.996 1 1 A LYS 0.620 1
ATOM 24 C CD . LYS 8 8 ? A 36.496 27.176 59.606 1 1 A LYS 0.620 1
ATOM 25 C CE . LYS 8 8 ? A 36.487 27.230 61.140 1 1 A LYS 0.620 1
ATOM 26 N NZ . LYS 8 8 ? A 37.868 27.297 61.671 1 1 A LYS 0.620 1
ATOM 27 N N . ILE 9 9 ? A 34.219 26.216 54.486 1 1 A ILE 0.650 1
ATOM 28 C CA . ILE 9 9 ? A 34.278 26.395 53.036 1 1 A ILE 0.650 1
ATOM 29 C C . ILE 9 9 ? A 32.899 26.659 52.458 1 1 A ILE 0.650 1
ATOM 30 O O . ILE 9 9 ? A 32.737 27.557 51.645 1 1 A ILE 0.650 1
ATOM 31 C CB . ILE 9 9 ? A 34.952 25.216 52.326 1 1 A ILE 0.650 1
ATOM 32 C CG1 . ILE 9 9 ? A 36.457 25.153 52.694 1 1 A ILE 0.650 1
ATOM 33 C CG2 . ILE 9 9 ? A 34.797 25.341 50.787 1 1 A ILE 0.650 1
ATOM 34 C CD1 . ILE 9 9 ? A 37.160 23.884 52.184 1 1 A ILE 0.650 1
ATOM 35 N N . LEU 10 10 ? A 31.850 25.931 52.907 1 1 A LEU 0.670 1
ATOM 36 C CA . LEU 10 10 ? A 30.489 26.171 52.458 1 1 A LEU 0.670 1
ATOM 37 C C . LEU 10 10 ? A 29.965 27.556 52.792 1 1 A LEU 0.670 1
ATOM 38 O O . LEU 10 10 ? A 29.307 28.191 51.978 1 1 A LEU 0.670 1
ATOM 39 C CB . LEU 10 10 ? A 29.508 25.114 53.012 1 1 A LEU 0.670 1
ATOM 40 C CG . LEU 10 10 ? A 29.659 23.713 52.383 1 1 A LEU 0.670 1
ATOM 41 C CD1 . LEU 10 10 ? A 28.719 22.728 53.094 1 1 A LEU 0.670 1
ATOM 42 C CD2 . LEU 10 10 ? A 29.358 23.715 50.872 1 1 A LEU 0.670 1
ATOM 43 N N . ARG 11 11 ? A 30.289 28.087 53.988 1 1 A ARG 0.620 1
ATOM 44 C CA . ARG 11 11 ? A 30.010 29.472 54.318 1 1 A ARG 0.620 1
ATOM 45 C C . ARG 11 11 ? A 30.729 30.469 53.426 1 1 A ARG 0.620 1
ATOM 46 O O . ARG 11 11 ? A 30.138 31.461 52.998 1 1 A ARG 0.620 1
ATOM 47 C CB . ARG 11 11 ? A 30.450 29.776 55.761 1 1 A ARG 0.620 1
ATOM 48 C CG . ARG 11 11 ? A 29.591 29.089 56.831 1 1 A ARG 0.620 1
ATOM 49 C CD . ARG 11 11 ? A 30.162 29.346 58.222 1 1 A ARG 0.620 1
ATOM 50 N NE . ARG 11 11 ? A 29.283 28.644 59.209 1 1 A ARG 0.620 1
ATOM 51 C CZ . ARG 11 11 ? A 29.566 28.539 60.513 1 1 A ARG 0.620 1
ATOM 52 N NH1 . ARG 11 11 ? A 30.681 29.061 61.015 1 1 A ARG 0.620 1
ATOM 53 N NH2 . ARG 11 11 ? A 28.723 27.924 61.338 1 1 A ARG 0.620 1
ATOM 54 N N . SER 12 12 ? A 32.019 30.231 53.111 1 1 A SER 0.640 1
ATOM 55 C CA . SER 12 12 ? A 32.753 31.022 52.133 1 1 A SER 0.640 1
ATOM 56 C C . SER 12 12 ? A 32.134 30.957 50.750 1 1 A SER 0.640 1
ATOM 57 O O . SER 12 12 ? A 31.870 32.001 50.156 1 1 A SER 0.640 1
ATOM 58 C CB . SER 12 12 ? A 34.246 30.620 52.050 1 1 A SER 0.640 1
ATOM 59 O OG . SER 12 12 ? A 34.895 30.959 53.278 1 1 A SER 0.640 1
ATOM 60 N N . ILE 13 13 ? A 31.782 29.758 50.234 1 1 A ILE 0.710 1
ATOM 61 C CA . ILE 13 13 ? A 31.092 29.566 48.959 1 1 A ILE 0.710 1
ATOM 62 C C . ILE 13 13 ? A 29.742 30.277 48.927 1 1 A ILE 0.710 1
ATOM 63 O O . ILE 13 13 ? A 29.420 30.951 47.952 1 1 A ILE 0.710 1
ATOM 64 C CB . ILE 13 13 ? A 30.947 28.078 48.599 1 1 A ILE 0.710 1
ATOM 65 C CG1 . ILE 13 13 ? A 32.342 27.495 48.250 1 1 A ILE 0.710 1
ATOM 66 C CG2 . ILE 13 13 ? A 29.960 27.856 47.418 1 1 A ILE 0.710 1
ATOM 67 C CD1 . ILE 13 13 ? A 32.360 25.965 48.116 1 1 A ILE 0.710 1
ATOM 68 N N . ALA 14 14 ? A 28.933 30.202 50.010 1 1 A ALA 0.680 1
ATOM 69 C CA . ALA 14 14 ? A 27.658 30.888 50.109 1 1 A ALA 0.680 1
ATOM 70 C C . ALA 14 14 ? A 27.754 32.414 50.031 1 1 A ALA 0.680 1
ATOM 71 O O . ALA 14 14 ? A 26.994 33.061 49.322 1 1 A ALA 0.680 1
ATOM 72 C CB . ALA 14 14 ? A 26.942 30.483 51.419 1 1 A ALA 0.680 1
ATOM 73 N N . LYS 15 15 ? A 28.742 33.020 50.737 1 1 A LYS 0.660 1
ATOM 74 C CA . LYS 15 15 ? A 29.036 34.442 50.639 1 1 A LYS 0.660 1
ATOM 75 C C . LYS 15 15 ? A 29.470 34.860 49.250 1 1 A LYS 0.660 1
ATOM 76 O O . LYS 15 15 ? A 29.000 35.867 48.726 1 1 A LYS 0.660 1
ATOM 77 C CB . LYS 15 15 ? A 30.170 34.847 51.610 1 1 A LYS 0.660 1
ATOM 78 C CG . LYS 15 15 ? A 29.744 34.808 53.081 1 1 A LYS 0.660 1
ATOM 79 C CD . LYS 15 15 ? A 30.892 35.209 54.017 1 1 A LYS 0.660 1
ATOM 80 C CE . LYS 15 15 ? A 30.483 35.164 55.491 1 1 A LYS 0.660 1
ATOM 81 N NZ . LYS 15 15 ? A 31.634 35.514 56.351 1 1 A LYS 0.660 1
ATOM 82 N N . VAL 16 16 ? A 30.358 34.056 48.618 1 1 A VAL 0.690 1
ATOM 83 C CA . VAL 16 16 ? A 30.810 34.268 47.255 1 1 A VAL 0.690 1
ATOM 84 C C . VAL 16 16 ? A 29.648 34.228 46.271 1 1 A VAL 0.690 1
ATOM 85 O O . VAL 16 16 ? A 29.422 35.177 45.542 1 1 A VAL 0.690 1
ATOM 86 C CB . VAL 16 16 ? A 31.869 33.230 46.870 1 1 A VAL 0.690 1
ATOM 87 C CG1 . VAL 16 16 ? A 32.236 33.264 45.368 1 1 A VAL 0.690 1
ATOM 88 C CG2 . VAL 16 16 ? A 33.150 33.492 47.692 1 1 A VAL 0.690 1
ATOM 89 N N . PHE 17 17 ? A 28.810 33.161 46.300 1 1 A PHE 0.700 1
ATOM 90 C CA . PHE 17 17 ? A 27.693 32.990 45.387 1 1 A PHE 0.700 1
ATOM 91 C C . PHE 17 17 ? A 26.651 34.101 45.508 1 1 A PHE 0.700 1
ATOM 92 O O . PHE 17 17 ? A 26.141 34.620 44.517 1 1 A PHE 0.700 1
ATOM 93 C CB . PHE 17 17 ? A 27.072 31.587 45.619 1 1 A PHE 0.700 1
ATOM 94 C CG . PHE 17 17 ? A 26.030 31.241 44.584 1 1 A PHE 0.700 1
ATOM 95 C CD1 . PHE 17 17 ? A 24.665 31.301 44.907 1 1 A PHE 0.700 1
ATOM 96 C CD2 . PHE 17 17 ? A 26.400 30.866 43.282 1 1 A PHE 0.700 1
ATOM 97 C CE1 . PHE 17 17 ? A 23.689 30.977 43.957 1 1 A PHE 0.700 1
ATOM 98 C CE2 . PHE 17 17 ? A 25.426 30.538 42.328 1 1 A PHE 0.700 1
ATOM 99 C CZ . PHE 17 17 ? A 24.070 30.591 42.667 1 1 A PHE 0.700 1
ATOM 100 N N . LYS 18 18 ? A 26.357 34.536 46.748 1 1 A LYS 0.700 1
ATOM 101 C CA . LYS 18 18 ? A 25.485 35.655 47.021 1 1 A LYS 0.700 1
ATOM 102 C C . LYS 18 18 ? A 25.976 36.980 46.454 1 1 A LYS 0.700 1
ATOM 103 O O . LYS 18 18 ? A 25.205 37.752 45.891 1 1 A LYS 0.700 1
ATOM 104 C CB . LYS 18 18 ? A 25.343 35.807 48.550 1 1 A LYS 0.700 1
ATOM 105 C CG . LYS 18 18 ? A 24.370 36.917 48.971 1 1 A LYS 0.700 1
ATOM 106 C CD . LYS 18 18 ? A 24.203 36.984 50.497 1 1 A LYS 0.700 1
ATOM 107 C CE . LYS 18 18 ? A 23.246 38.091 50.952 1 1 A LYS 0.700 1
ATOM 108 N NZ . LYS 18 18 ? A 23.096 38.118 52.425 1 1 A LYS 0.700 1
ATOM 109 N N . GLY 19 19 ? A 27.291 37.270 46.587 1 1 A GLY 0.730 1
ATOM 110 C CA . GLY 19 19 ? A 27.890 38.464 46.005 1 1 A GLY 0.730 1
ATOM 111 C C . GLY 19 19 ? A 27.928 38.400 44.509 1 1 A GLY 0.730 1
ATOM 112 O O . GLY 19 19 ? A 27.607 39.388 43.847 1 1 A GLY 0.730 1
ATOM 113 N N . VAL 20 20 ? A 28.234 37.225 43.926 1 1 A VAL 0.730 1
ATOM 114 C CA . VAL 20 20 ? A 28.178 36.994 42.488 1 1 A VAL 0.730 1
ATOM 115 C C . VAL 20 20 ? A 26.790 37.250 41.930 1 1 A VAL 0.730 1
ATOM 116 O O . VAL 20 20 ? A 26.640 38.013 40.980 1 1 A VAL 0.730 1
ATOM 117 C CB . VAL 20 20 ? A 28.598 35.563 42.137 1 1 A VAL 0.730 1
ATOM 118 C CG1 . VAL 20 20 ? A 28.306 35.185 40.663 1 1 A VAL 0.730 1
ATOM 119 C CG2 . VAL 20 20 ? A 30.109 35.408 42.393 1 1 A VAL 0.730 1
ATOM 120 N N . GLY 21 21 ? A 25.732 36.669 42.546 1 1 A GLY 0.700 1
ATOM 121 C CA . GLY 21 21 ? A 24.335 36.916 42.202 1 1 A GLY 0.700 1
ATOM 122 C C . GLY 21 21 ? A 23.919 38.358 42.232 1 1 A GLY 0.700 1
ATOM 123 O O . GLY 21 21 ? A 23.309 38.853 41.289 1 1 A GLY 0.700 1
ATOM 124 N N . LYS 22 22 ? A 24.256 39.080 43.320 1 1 A LYS 0.680 1
ATOM 125 C CA . LYS 22 22 ? A 23.996 40.503 43.442 1 1 A LYS 0.680 1
ATOM 126 C C . LYS 22 22 ? A 24.647 41.358 42.367 1 1 A LYS 0.680 1
ATOM 127 O O . LYS 22 22 ? A 23.958 42.115 41.700 1 1 A LYS 0.680 1
ATOM 128 C CB . LYS 22 22 ? A 24.527 41.028 44.794 1 1 A LYS 0.680 1
ATOM 129 C CG . LYS 22 22 ? A 23.659 40.651 45.993 1 1 A LYS 0.680 1
ATOM 130 C CD . LYS 22 22 ? A 24.347 41.108 47.286 1 1 A LYS 0.680 1
ATOM 131 C CE . LYS 22 22 ? A 23.556 40.792 48.548 1 1 A LYS 0.680 1
ATOM 132 N NZ . LYS 22 22 ? A 22.308 41.584 48.590 1 1 A LYS 0.680 1
ATOM 133 N N . VAL 23 23 ? A 25.977 41.207 42.152 1 1 A VAL 0.690 1
ATOM 134 C CA . VAL 23 23 ? A 26.742 41.964 41.163 1 1 A VAL 0.690 1
ATOM 135 C C . VAL 23 23 ? A 26.250 41.678 39.755 1 1 A VAL 0.690 1
ATOM 136 O O . VAL 23 23 ? A 26.039 42.566 38.923 1 1 A VAL 0.690 1
ATOM 137 C CB . VAL 23 23 ? A 28.228 41.588 41.254 1 1 A VAL 0.690 1
ATOM 138 C CG1 . VAL 23 23 ? A 29.055 42.199 40.097 1 1 A VAL 0.690 1
ATOM 139 C CG2 . VAL 23 23 ? A 28.808 42.079 42.599 1 1 A VAL 0.690 1
ATOM 140 N N . ARG 24 24 ? A 26.022 40.392 39.448 1 1 A ARG 0.610 1
ATOM 141 C CA . ARG 24 24 ? A 25.586 39.946 38.148 1 1 A ARG 0.610 1
ATOM 142 C C . ARG 24 24 ? A 24.194 40.401 37.767 1 1 A ARG 0.610 1
ATOM 143 O O . ARG 24 24 ? A 23.936 40.814 36.639 1 1 A ARG 0.610 1
ATOM 144 C CB . ARG 24 24 ? A 25.624 38.413 38.097 1 1 A ARG 0.610 1
ATOM 145 C CG . ARG 24 24 ? A 25.673 37.859 36.667 1 1 A ARG 0.610 1
ATOM 146 C CD . ARG 24 24 ? A 26.969 37.083 36.447 1 1 A ARG 0.610 1
ATOM 147 N NE . ARG 24 24 ? A 26.998 36.719 34.992 1 1 A ARG 0.610 1
ATOM 148 C CZ . ARG 24 24 ? A 28.050 36.866 34.174 1 1 A ARG 0.610 1
ATOM 149 N NH1 . ARG 24 24 ? A 29.228 37.285 34.616 1 1 A ARG 0.610 1
ATOM 150 N NH2 . ARG 24 24 ? A 27.913 36.589 32.878 1 1 A ARG 0.610 1
ATOM 151 N N . LYS 25 25 ? A 23.261 40.340 38.740 1 1 A LYS 0.600 1
ATOM 152 C CA . LYS 25 25 ? A 21.916 40.839 38.602 1 1 A LYS 0.600 1
ATOM 153 C C . LYS 25 25 ? A 21.877 42.339 38.347 1 1 A LYS 0.600 1
ATOM 154 O O . LYS 25 25 ? A 21.115 42.799 37.513 1 1 A LYS 0.600 1
ATOM 155 C CB . LYS 25 25 ? A 21.079 40.500 39.858 1 1 A LYS 0.600 1
ATOM 156 C CG . LYS 25 25 ? A 19.610 40.935 39.741 1 1 A LYS 0.600 1
ATOM 157 C CD . LYS 25 25 ? A 18.771 40.567 40.972 1 1 A LYS 0.600 1
ATOM 158 C CE . LYS 25 25 ? A 17.322 41.052 40.848 1 1 A LYS 0.600 1
ATOM 159 N NZ . LYS 25 25 ? A 16.546 40.673 42.049 1 1 A LYS 0.600 1
ATOM 160 N N . GLN 26 26 ? A 22.734 43.132 39.038 1 1 A GLN 0.560 1
ATOM 161 C CA . GLN 26 26 ? A 22.871 44.559 38.779 1 1 A GLN 0.560 1
ATOM 162 C C . GLN 26 26 ? A 23.295 44.885 37.361 1 1 A GLN 0.560 1
ATOM 163 O O . GLN 26 26 ? A 22.701 45.754 36.733 1 1 A GLN 0.560 1
ATOM 164 C CB . GLN 26 26 ? A 23.945 45.188 39.697 1 1 A GLN 0.560 1
ATOM 165 C CG . GLN 26 26 ? A 23.526 45.309 41.173 1 1 A GLN 0.560 1
ATOM 166 C CD . GLN 26 26 ? A 24.709 45.822 41.999 1 1 A GLN 0.560 1
ATOM 167 O OE1 . GLN 26 26 ? A 25.873 45.637 41.694 1 1 A GLN 0.560 1
ATOM 168 N NE2 . GLN 26 26 ? A 24.375 46.517 43.116 1 1 A GLN 0.560 1
ATOM 169 N N . PHE 27 27 ? A 24.309 44.172 36.821 1 1 A PHE 0.490 1
ATOM 170 C CA . PHE 27 27 ? A 24.770 44.328 35.451 1 1 A PHE 0.490 1
ATOM 171 C C . PHE 27 27 ? A 23.703 43.977 34.423 1 1 A PHE 0.490 1
ATOM 172 O O . PHE 27 27 ? A 23.544 44.659 33.432 1 1 A PHE 0.490 1
ATOM 173 C CB . PHE 27 27 ? A 26.034 43.445 35.211 1 1 A PHE 0.490 1
ATOM 174 C CG . PHE 27 27 ? A 26.571 43.563 33.795 1 1 A PHE 0.490 1
ATOM 175 C CD1 . PHE 27 27 ? A 26.214 42.621 32.812 1 1 A PHE 0.490 1
ATOM 176 C CD2 . PHE 27 27 ? A 27.344 44.669 33.410 1 1 A PHE 0.490 1
ATOM 177 C CE1 . PHE 27 27 ? A 26.648 42.761 31.487 1 1 A PHE 0.490 1
ATOM 178 C CE2 . PHE 27 27 ? A 27.789 44.809 32.088 1 1 A PHE 0.490 1
ATOM 179 C CZ . PHE 27 27 ? A 27.450 43.850 31.128 1 1 A PHE 0.490 1
ATOM 180 N N . LYS 28 28 ? A 22.964 42.870 34.646 1 1 A LYS 0.490 1
ATOM 181 C CA . LYS 28 28 ? A 21.882 42.456 33.775 1 1 A LYS 0.490 1
ATOM 182 C C . LYS 28 28 ? A 20.687 43.408 33.722 1 1 A LYS 0.490 1
ATOM 183 O O . LYS 28 28 ? A 20.028 43.545 32.707 1 1 A LYS 0.490 1
ATOM 184 C CB . LYS 28 28 ? A 21.348 41.088 34.262 1 1 A LYS 0.490 1
ATOM 185 C CG . LYS 28 28 ? A 20.211 40.532 33.389 1 1 A LYS 0.490 1
ATOM 186 C CD . LYS 28 28 ? A 19.692 39.174 33.869 1 1 A LYS 0.490 1
ATOM 187 C CE . LYS 28 28 ? A 18.529 38.668 33.009 1 1 A LYS 0.490 1
ATOM 188 N NZ . LYS 28 28 ? A 18.071 37.349 33.496 1 1 A LYS 0.490 1
ATOM 189 N N . THR 29 29 ? A 20.343 43.984 34.893 1 1 A THR 0.440 1
ATOM 190 C CA . THR 29 29 ? A 19.330 45.021 35.054 1 1 A THR 0.440 1
ATOM 191 C C . THR 29 29 ? A 19.694 46.378 34.457 1 1 A THR 0.440 1
ATOM 192 O O . THR 29 29 ? A 18.813 47.084 33.981 1 1 A THR 0.440 1
ATOM 193 C CB . THR 29 29 ? A 19.000 45.244 36.524 1 1 A THR 0.440 1
ATOM 194 O OG1 . THR 29 29 ? A 18.400 44.089 37.089 1 1 A THR 0.440 1
ATOM 195 C CG2 . THR 29 29 ? A 17.977 46.364 36.769 1 1 A THR 0.440 1
ATOM 196 N N . ALA 30 30 ? A 20.978 46.793 34.555 1 1 A ALA 0.490 1
ATOM 197 C CA . ALA 30 30 ? A 21.488 48.026 33.983 1 1 A ALA 0.490 1
ATOM 198 C C . ALA 30 30 ? A 21.664 48.057 32.435 1 1 A ALA 0.490 1
ATOM 199 O O . ALA 30 30 ? A 21.408 47.044 31.736 1 1 A ALA 0.490 1
ATOM 200 C CB . ALA 30 30 ? A 22.863 48.345 34.619 1 1 A ALA 0.490 1
ATOM 201 O OXT . ALA 30 30 ? A 22.064 49.152 31.942 1 1 A ALA 0.490 1
#
#
loop_
_atom_type.symbol
C
N
O
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.631
2 1 3 0.525
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 6 PHE 1 0.600
2 1 A 7 SER 1 0.630
3 1 A 8 LYS 1 0.620
4 1 A 9 ILE 1 0.650
5 1 A 10 LEU 1 0.670
6 1 A 11 ARG 1 0.620
7 1 A 12 SER 1 0.640
8 1 A 13 ILE 1 0.710
9 1 A 14 ALA 1 0.680
10 1 A 15 LYS 1 0.660
11 1 A 16 VAL 1 0.690
12 1 A 17 PHE 1 0.700
13 1 A 18 LYS 1 0.700
14 1 A 19 GLY 1 0.730
15 1 A 20 VAL 1 0.730
16 1 A 21 GLY 1 0.700
17 1 A 22 LYS 1 0.680
18 1 A 23 VAL 1 0.690
19 1 A 24 ARG 1 0.610
20 1 A 25 LYS 1 0.600
21 1 A 26 GLN 1 0.560
22 1 A 27 PHE 1 0.490
23 1 A 28 LYS 1 0.490
24 1 A 29 THR 1 0.440
25 1 A 30 ALA 1 0.490
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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