data_SMR-b3cad2ad385be0c6613d31799272f41b_1
_entry.id SMR-b3cad2ad385be0c6613d31799272f41b_1
_struct.entry_id SMR-b3cad2ad385be0c6613d31799272f41b_1
_struct.pdbx_model_details
;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries:

  - P85242/ CYVD_VIOBI, Cyclotide vibi-D

Estimated model accuracy of this model is 0.783, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE).
;
_struct.pdbx_structure_determination_methodology computational
_struct.title 'Model for UniProtKB entries P85242'
_audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/80e1e22/dist/mmcif_ma.dic
_audit_conform.dict_name mmcif_ma.dic
_audit_conform.dict_version 1.4.7
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The SWISS-MODEL Repository - new features and functionality'
'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132
2 'SWISS-MODEL: homology modelling of protein structures and complexes'
'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427
3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1)
1 18 2021 33507980 10.1371/journal.pcbi.1008667
4 'QMEANDisCo - distance constraints applied on model quality estimation'
Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828
5
'OpenStructure: an integrated software framework for computational structural biology'
'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579
10.1107/S0907444913007051
6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500
10.1186/1471-2105-10-421
7 'HH-suite3 for fast remote homology detection and deep protein annotation'
'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7
#
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Bienert, S.' 1
primary 'Waterhouse, A.' 2
primary 'de Beer, T.A.P.' 3
primary 'Tauriello, G.' 4
primary 'Studer, G.' 5
primary 'Bordoli, L.' 6
primary 'Schwede, T.' 7
2 'Waterhouse, A.' 8
2 'Bertoni, M.' 9
2 'Bienert, S.' 10
2 'Studer, G.' 11
2 'Tauriello, G.' 12
2 'Gumienny, R.' 13
2 'Heer, F.T.' 14
2 'de Beer, T.A.P.' 15
2 'Rempfer, C.' 16
2 'Bordoli, L.' 17
2 'Lepore, R.' 18
2 'Schwede, T.' 19
3 'Studer, G.' 20
3 'Tauriello, G.' 21
3 'Bienert, S.' 22
3 'Biasini, M.' 23
3 'Johner, N.' 24
3 'Schwede, T.' 25
4 'Studer, G.' 26
4 'Rempfer, C.' 27
4 'Waterhouse, A.M.' 28
4 'Gumienny, R.' 29
4 'Haas, J.' 30
4 'Schwede, T.' 31
5 'Biasini, M.' 32
5 'Schmidt, T.' 33
5 'Bienert, S.' 34
5 'Mariani, V.' 35
5 'Studer, G.' 36
5 'Haas, J.' 37
5 'Johner, N.' 38
5 'Schenk, A.D.' 39
5 'Philippsen, A.' 40
5 'Schwede, T.' 41
6 'Camacho, C.' 42
6 'Coulouris, G.' 43
6 'Avagyan, V.' 44
6 'Ma, N.' 45
6 'Papadopoulos, J.' 46
6 'Bealer, K.' 47
6 'Madden, T.L.' 48
7 'Steinegger, M.' 49
7 'Meier, M.' 50
7 'Mirdita, M.' 51
7 'Vohringer, H.' 52
7 'Haunsberger, S.J.' 53
7 'Soding, J.' 54
#
#
loop_
_software.pdbx_ordinal
_software.name
_software.classification
_software.description
_software.version
_software.type
_software.location
_software.citation_id
1 SWISS-MODEL 'model building' 'Homology modelling web service' 2025-06.3
package https://swissmodel.expasy.org 2
2 ProMod3 'model building' 'Modular homology modelling engine' 3.5.0 library
https://git.scicore.unibas.ch/schwede/ProMod3 3
3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.4.0
library https://git.scicore.unibas.ch/schwede/QMEAN 4
4 OpenStructure 'data processing'
'Open-Source Computational Structural Biology Framework' 2.10.0 package
https://openstructure.org/ 5
5 BLAST 'data collection' . 2.14.1 package https://blast.ncbi.nlm.nih.gov 6
6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0
package https://github.com/soedinglab/hh-suite 7
#
#
loop_
_ma_software_group.ordinal_id
_ma_software_group.group_id
_ma_software_group.software_id
_ma_software_group.parameter_group_id
1 1 6 .
2 2 1 .
3 2 4 .
4 2 5 .
5 2 6 .
6 3 1 .
7 3 4 .
8 4 1 .
9 4 2 .
10 4 4 .
11 5 3 .
12 6 1 .
13 6 3 .
14 6 4 .
#
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Bienert, S.' 1
'Waterhouse, A.' 2
'de Beer, T.A.P.' 3
'Tauriello, G.' 4
'Studer, G.' 5
'Bordoli, L.' 6
'Schwede, T.' 7
#
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.name
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.ma_provenance
ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core'
ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core'
ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core'
CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core'
GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core'
GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core'
ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core'
PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core'
PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core'
SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core'
THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core'
TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core'
TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core'
VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core'
#
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.details
1 polymer man . 3516.901 1 .
#
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.details
1 1 UNP CYVD_VIOBI P85242 1 GLPVCGETCFGGRCNTPGCTCSYPICTRN 'Cyclotide vibi-D'
#
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
1 1 1 29 1 29
#
#
loop_
_ma_target_ref_db_details.target_entity_id
_ma_target_ref_db_details.db_name
_ma_target_ref_db_details.db_name_other_details
_ma_target_ref_db_details.db_code
_ma_target_ref_db_details.db_accession
_ma_target_ref_db_details.seq_db_isoform
_ma_target_ref_db_details.seq_db_align_begin
_ma_target_ref_db_details.seq_db_align_end
_ma_target_ref_db_details.ncbi_taxonomy_id
_ma_target_ref_db_details.organism_scientific
_ma_target_ref_db_details.seq_db_sequence_version_date
_ma_target_ref_db_details.seq_db_sequence_checksum
_ma_target_ref_db_details.is_primary
1 UNP . CYVD_VIOBI P85242 . 1 29 214529 'Viola biflora (Yellow wood violet)'
2008-06-10 36F54BF39A12F238 .
#
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
1 polypeptide(L) no no A GLPVCGETCFGGRCNTPGCTCSYPICTRN
GLPVCGETCFGGRCNTPGCTCSYPICTRN
#
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY .
1 2 LEU .
1 3 PRO .
1 4 VAL .
1 5 CYS .
1 6 GLY .
1 7 GLU .
1 8 THR .
1 9 CYS .
1 10 PHE .
1 11 GLY .
1 12 GLY .
1 13 ARG .
1 14 CYS .
1 15 ASN .
1 16 THR .
1 17 PRO .
1 18 GLY .
1 19 CYS .
1 20 THR .
1 21 CYS .
1 22 SER .
1 23 TYR .
1 24 PRO .
1 25 ILE .
1 26 CYS .
1 27 THR .
1 28 ARG .
1 29 ASN .
#
#
loop_
_struct_asym.id
_struct_asym.entity_id
_struct_asym.details
A 1 .
#
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
A 1 1 GLY 1 1 GLY GLY A .
A 1 2 LEU 2 2 LEU LEU A .
A 1 3 PRO 3 3 PRO PRO A .
A 1 4 VAL 4 4 VAL VAL A .
A 1 5 CYS 5 5 CYS CYS A .
A 1 6 GLY 6 6 GLY GLY A .
A 1 7 GLU 7 7 GLU GLU A .
A 1 8 THR 8 8 THR THR A .
A 1 9 CYS 9 9 CYS CYS A .
A 1 10 PHE 10 10 PHE PHE A .
A 1 11 GLY 11 11 GLY GLY A .
A 1 12 GLY 12 12 GLY GLY A .
A 1 13 ARG 13 13 ARG ARG A .
A 1 14 CYS 14 14 CYS CYS A .
A 1 15 ASN 15 15 ASN ASN A .
A 1 16 THR 16 16 THR THR A .
A 1 17 PRO 17 17 PRO PRO A .
A 1 18 GLY 18 18 GLY GLY A .
A 1 19 CYS 19 19 CYS CYS A .
A 1 20 THR 20 20 THR THR A .
A 1 21 CYS 21 21 CYS CYS A .
A 1 22 SER 22 22 SER SER A .
A 1 23 TYR 23 23 TYR TYR A .
A 1 24 PRO 24 24 PRO PRO A .
A 1 25 ILE 25 25 ILE ILE A .
A 1 26 CYS 26 26 CYS CYS A .
A 1 27 THR 27 27 THR THR A .
A 1 28 ARG 28 28 ARG ARG A .
A 1 29 ASN 29 29 ASN ASN A .
#
#
loop_
_ma_data.id
_ma_data.name
_ma_data.content_type
_ma_data.content_type_other_details
1 'Kalata-B1 {PDB ID=4tto, label_asym_id=A, auth_asym_id=A, SMTL ID=4tto.1.A}'
'template structure' .
2 . target .
3 'Target-template alignment by HHblits to 4tto, label_asym_id=A'
'target-template alignment' .
4 'model 1' 'model coordinates' .
5 SMTL 'reference database' .
6 PDB 'reference database' .
7 'Template search output' other 'Results of the sequence search'
#
#
loop_
_ma_data_group.ordinal_id
_ma_data_group.group_id
_ma_data_group.data_id
1 1 2
2 1 5
3 1 6
4 2 7
5 3 2
6 3 1
7 3 3
8 4 1
9 4 3
10 5 4
#
#
loop_
_ma_data_ref_db.data_id
_ma_data_ref_db.name
_ma_data_ref_db.location_url
_ma_data_ref_db.version
_ma_data_ref_db.release_date
5 SMTL https://swissmodel.expasy.org/templates/ . 2025-06-25
6 PDB https://www.wwpdb.org . 2025-06-20
#
#
loop_
_ma_target_entity.entity_id
_ma_target_entity.data_id
_ma_target_entity.origin
1 2 'reference database'
#
#
loop_
_ma_target_entity_instance.asym_id
_ma_target_entity_instance.entity_id
_ma_target_entity_instance.details
A 1 .
#
#
loop_
_ma_template_trans_matrix.id
_ma_template_trans_matrix.rot_matrix[1][1]
_ma_template_trans_matrix.rot_matrix[2][1]
_ma_template_trans_matrix.rot_matrix[3][1]
_ma_template_trans_matrix.rot_matrix[1][2]
_ma_template_trans_matrix.rot_matrix[2][2]
_ma_template_trans_matrix.rot_matrix[3][2]
_ma_template_trans_matrix.rot_matrix[1][3]
_ma_template_trans_matrix.rot_matrix[2][3]
_ma_template_trans_matrix.rot_matrix[3][3]
_ma_template_trans_matrix.tr_vector[1]
_ma_template_trans_matrix.tr_vector[2]
_ma_template_trans_matrix.tr_vector[3]
1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0 0 0
#
#
loop_
_ma_template_details.ordinal_id
_ma_template_details.template_id
_ma_template_details.template_origin
_ma_template_details.template_entity_type
_ma_template_details.template_trans_matrix_id
_ma_template_details.template_data_id
_ma_template_details.target_asym_id
_ma_template_details.template_label_asym_id
_ma_template_details.template_label_entity_id
_ma_template_details.template_model_num
_ma_template_details.template_auth_asym_id
1 1 'reference database' polymer 1 1 A A 1 1 A
#
#
loop_
_ma_template_poly.template_id
_ma_template_poly.seq_one_letter_code
_ma_template_poly.seq_one_letter_code_can
1 GLPVCGETCVGGTCNTPGCTCSWPACTRN GLPVCGETCVGGTCNTPGCTCSWPACTRN
#
#
loop_
_ma_template_poly_segment.id
_ma_template_poly_segment.template_id
_ma_template_poly_segment.residue_number_begin
_ma_template_poly_segment.residue_number_end
1 1 1 29
#
#
loop_
_ma_template_ref_db_details.template_id
_ma_template_ref_db_details.db_name
_ma_template_ref_db_details.db_name_other_details
_ma_template_ref_db_details.db_accession_code
_ma_template_ref_db_details.db_version_date
1 PDB . 4tto 2024-11-13
#
#
loop_
_ma_target_template_poly_mapping.id
_ma_target_template_poly_mapping.template_segment_id
_ma_target_template_poly_mapping.target_asym_id
_ma_target_template_poly_mapping.target_seq_id_begin
_ma_target_template_poly_mapping.target_seq_id_end
1 1 A 1 29
#
#
loop_
_ma_alignment_info.alignment_id
_ma_alignment_info.data_id
_ma_alignment_info.software_group_id
_ma_alignment_info.alignment_length
_ma_alignment_info.alignment_type
_ma_alignment_info.alignment_mode
1 3 1 29 'target-template pairwise alignment' local
#
#
loop_
_ma_alignment_details.ordinal_id
_ma_alignment_details.alignment_id
_ma_alignment_details.template_segment_id
_ma_alignment_details.target_asym_id
_ma_alignment_details.score_type
_ma_alignment_details.score_type_other_details
_ma_alignment_details.score_value
_ma_alignment_details.percent_sequence_identity
_ma_alignment_details.sequence_identity_denominator
_ma_alignment_details.sequence_identity_denominator_other_details
1 1 1 A 'HHblits e-value' . 4.5e-18 86.207
'Number of aligned residue pairs (not including the gaps)' .
#
#
loop_
_ma_alignment.ordinal_id
_ma_alignment.alignment_id
_ma_alignment.target_template_flag
_ma_alignment.sequence
1 1 1 GLPVCGETCFGGRCNTPGCTCSYPICTRN
2 1 2 GLPVCGETCVGGTCNTPGCTCSWPACTRN
#
#
loop_
_ma_protocol_step.ordinal_id
_ma_protocol_step.protocol_id
_ma_protocol_step.step_id
_ma_protocol_step.method_type
_ma_protocol_step.step_name
_ma_protocol_step.details
_ma_protocol_step.software_group_id
_ma_protocol_step.input_data_group_id
_ma_protocol_step.output_data_group_id
1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2
1 2
2 1 2 'template selection' 'template selection'
'Automatic template selection by SWISS-MODEL' 3 2 4
3 1 3 modeling 'homology modeling'
'SWISS-MODEL auto-model mode using ProMod3 on 4tto.1' 4 3 5
#
#
loop_
_ma_model_list.ordinal_id
_ma_model_list.model_name
_ma_model_list.data_id
_ma_model_list.model_type
_ma_model_list.model_type_other_details
1 'model 1' 4 'Homology model' .
#
#
loop_
_ma_model_group.id
_ma_model_group.name
_ma_model_group.details
1 . .
#
#
loop_
_ma_model_group_link.group_id
_ma_model_group_link.model_id
1 1
#
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.auth_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.label_entity_id
_atom_site.auth_asym_id
_atom_site.auth_comp_id
_atom_site.B_iso_or_equiv
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY 1 1 ? A 24.225 32.947 40.901 1 1 A GLY 0.490 1
ATOM 2 C CA . GLY 1 1 ? A 24.246 32.795 39.373 1 1 A GLY 0.490 1
ATOM 3 C C . GLY 1 1 ? A 24.483 31.402 38.812 1 1 A GLY 0.490 1
ATOM 4 O O . GLY 1 1 ? A 24.030 31.172 37.703 1 1 A GLY 0.490 1
ATOM 5 N N . LEU 2 2 ? A 25.180 30.425 39.494 1 1 A LEU 0.490 1
ATOM 6 C CA . LEU 2 2 ? A 25.514 29.148 38.840 1 1 A LEU 0.490 1
ATOM 7 C C . LEU 2 2 ? A 24.872 27.904 39.448 1 1 A LEU 0.490 1
ATOM 8 O O . LEU 2 2 ? A 24.890 27.748 40.671 1 1 A LEU 0.490 1
ATOM 9 C CB . LEU 2 2 ? A 27.038 28.854 38.712 1 1 A LEU 0.490 1
ATOM 10 C CG . LEU 2 2 ? A 27.763 29.774 37.711 1 1 A LEU 0.490 1
ATOM 11 C CD1 . LEU 2 2 ? A 29.246 29.385 37.598 1 1 A LEU 0.490 1
ATOM 12 C CD2 . LEU 2 2 ? A 27.119 29.751 36.310 1 1 A LEU 0.490 1
ATOM 13 N N . PRO 3 3 ? A 24.304 26.987 38.645 1 1 A PRO 0.700 1
ATOM 14 C CA . PRO 3 3 ? A 23.614 25.801 39.132 1 1 A PRO 0.700 1
ATOM 15 C C . PRO 3 3 ? A 24.580 24.687 39.478 1 1 A PRO 0.700 1
ATOM 16 O O . PRO 3 3 ? A 24.672 23.685 38.780 1 1 A PRO 0.700 1
ATOM 17 C CB . PRO 3 3 ? A 22.740 25.413 37.929 1 1 A PRO 0.700 1
ATOM 18 C CG . PRO 3 3 ? A 23.506 25.859 36.684 1 1 A PRO 0.700 1
ATOM 19 C CD . PRO 3 3 ? A 24.237 27.096 37.182 1 1 A PRO 0.700 1
ATOM 20 N N . VAL 4 4 ? A 25.316 24.835 40.583 1 1 A VAL 0.800 1
ATOM 21 C CA . VAL 4 4 ? A 26.329 23.881 41.010 1 1 A VAL 0.800 1
ATOM 22 C C . VAL 4 4 ? A 25.928 23.294 42.345 1 1 A VAL 0.800 1
ATOM 23 O O . VAL 4 4 ? A 26.746 22.822 43.130 1 1 A VAL 0.800 1
ATOM 24 C CB . VAL 4 4 ? A 27.711 24.519 41.105 1 1 A VAL 0.800 1
ATOM 25 C CG1 . VAL 4 4 ? A 28.145 24.977 39.696 1 1 A VAL 0.800 1
ATOM 26 C CG2 . VAL 4 4 ? A 27.722 25.707 42.095 1 1 A VAL 0.800 1
ATOM 27 N N . CYS 5 5 ? A 24.621 23.326 42.661 1 1 A CYS 0.840 1
ATOM 28 C CA . CYS 5 5 ? A 24.149 22.941 43.976 1 1 A CYS 0.840 1
ATOM 29 C C . CYS 5 5 ? A 23.629 21.531 44.001 1 1 A CYS 0.840 1
ATOM 30 O O . CYS 5 5 ? A 23.293 21.039 45.072 1 1 A CYS 0.840 1
ATOM 31 C CB . CYS 5 5 ? A 22.992 23.863 44.420 1 1 A CYS 0.840 1
ATOM 32 S SG . CYS 5 5 ? A 23.596 25.559 44.609 1 1 A CYS 0.840 1
ATOM 33 N N . GLY 6 6 ? A 23.544 20.849 42.829 1 1 A GLY 0.730 1
ATOM 34 C CA . GLY 6 6 ? A 22.934 19.521 42.708 1 1 A GLY 0.730 1
ATOM 35 C C . GLY 6 6 ? A 21.506 19.445 43.183 1 1 A GLY 0.730 1
ATOM 36 O O . GLY 6 6 ? A 21.085 18.443 43.748 1 1 A GLY 0.730 1
ATOM 37 N N . GLU 7 7 ? A 20.735 20.530 42.984 1 1 A GLU 0.760 1
ATOM 38 C CA . GLU 7 7 ? A 19.405 20.638 43.537 1 1 A GLU 0.760 1
ATOM 39 C C . GLU 7 7 ? A 18.514 21.439 42.605 1 1 A GLU 0.760 1
ATOM 40 O O . GLU 7 7 ? A 18.911 22.456 42.033 1 1 A GLU 0.760 1
ATOM 41 C CB . GLU 7 7 ? A 19.440 21.288 44.945 1 1 A GLU 0.760 1
ATOM 42 C CG . GLU 7 7 ? A 18.078 21.268 45.686 1 1 A GLU 0.760 1
ATOM 43 C CD . GLU 7 7 ? A 18.098 21.973 47.038 1 1 A GLU 0.760 1
ATOM 44 O OE1 . GLU 7 7 ? A 17.092 21.839 47.784 1 1 A GLU 0.760 1
ATOM 45 O OE2 . GLU 7 7 ? A 19.082 22.691 47.346 1 1 A GLU 0.760 1
ATOM 46 N N . THR 8 8 ? A 17.261 20.984 42.421 1 1 A THR 0.780 1
ATOM 47 C CA . THR 8 8 ? A 16.216 21.731 41.735 1 1 A THR 0.780 1
ATOM 48 C C . THR 8 8 ? A 15.257 22.304 42.754 1 1 A THR 0.780 1
ATOM 49 O O . THR 8 8 ? A 15.122 21.818 43.869 1 1 A THR 0.780 1
ATOM 50 C CB . THR 8 8 ? A 15.407 20.910 40.737 1 1 A THR 0.780 1
ATOM 51 O OG1 . THR 8 8 ? A 14.821 19.768 41.341 1 1 A THR 0.780 1
ATOM 52 C CG2 . THR 8 8 ? A 16.339 20.397 39.636 1 1 A THR 0.780 1
ATOM 53 N N . CYS 9 9 ? A 14.541 23.374 42.390 1 1 A CYS 0.760 1
ATOM 54 C CA . CYS 9 9 ? A 13.633 24.045 43.296 1 1 A CYS 0.760 1
ATOM 55 C C . CYS 9 9 ? A 12.360 24.386 42.570 1 1 A CYS 0.760 1
ATOM 56 O O . CYS 9 9 ? A 11.954 25.540 42.485 1 1 A CYS 0.760 1
ATOM 57 C CB . CYS 9 9 ? A 14.241 25.318 43.933 1 1 A CYS 0.760 1
ATOM 58 S SG . CYS 9 9 ? A 14.981 26.480 42.740 1 1 A CYS 0.760 1
ATOM 59 N N . PHE 10 10 ? A 11.645 23.366 42.049 1 1 A PHE 0.690 1
ATOM 60 C CA . PHE 10 10 ? A 10.365 23.556 41.378 1 1 A PHE 0.690 1
ATOM 61 C C . PHE 10 10 ? A 9.324 24.206 42.298 1 1 A PHE 0.690 1
ATOM 62 O O . PHE 10 10 ? A 8.575 25.091 41.900 1 1 A PHE 0.690 1
ATOM 63 C CB . PHE 10 10 ? A 9.853 22.190 40.830 1 1 A PHE 0.690 1
ATOM 64 C CG . PHE 10 10 ? A 8.572 22.335 40.038 1 1 A PHE 0.690 1
ATOM 65 C CD1 . PHE 10 10 ? A 7.339 22.007 40.627 1 1 A PHE 0.690 1
ATOM 66 C CD2 . PHE 10 10 ? A 8.589 22.818 38.718 1 1 A PHE 0.690 1
ATOM 67 C CE1 . PHE 10 10 ? A 6.145 22.133 39.906 1 1 A PHE 0.690 1
ATOM 68 C CE2 . PHE 10 10 ? A 7.397 22.942 37.989 1 1 A PHE 0.690 1
ATOM 69 C CZ . PHE 10 10 ? A 6.177 22.597 38.586 1 1 A PHE 0.690 1
ATOM 70 N N . GLY 11 11 ? A 9.318 23.816 43.591 1 1 A GLY 0.740 1
ATOM 71 C CA . GLY 11 11 ? A 8.467 24.423 44.610 1 1 A GLY 0.740 1
ATOM 72 C C . GLY 11 11 ? A 8.933 25.778 45.105 1 1 A GLY 0.740 1
ATOM 73 O O . GLY 11 11 ? A 8.253 26.420 45.896 1 1 A GLY 0.740 1
ATOM 74 N N . GLY 12 12 ? A 10.108 26.271 44.646 1 1 A GLY 0.760 1
ATOM 75 C CA . GLY 12 12 ? A 10.537 27.646 44.886 1 1 A GLY 0.760 1
ATOM 76 C C . GLY 12 12 ? A 11.514 27.836 46.015 1 1 A GLY 0.760 1
ATOM 77 O O . GLY 12 12 ? A 11.882 28.965 46.336 1 1 A GLY 0.760 1
ATOM 78 N N . ARG 13 13 ? A 11.961 26.756 46.679 1 1 A ARG 0.690 1
ATOM 79 C CA . ARG 13 13 ? A 12.926 26.844 47.765 1 1 A ARG 0.690 1
ATOM 80 C C . ARG 13 13 ? A 13.978 25.774 47.640 1 1 A ARG 0.690 1
ATOM 81 O O . ARG 13 13 ? A 13.684 24.677 47.179 1 1 A ARG 0.690 1
ATOM 82 C CB . ARG 13 13 ? A 12.254 26.688 49.155 1 1 A ARG 0.690 1
ATOM 83 C CG . ARG 13 13 ? A 11.297 27.839 49.509 1 1 A ARG 0.690 1
ATOM 84 C CD . ARG 13 13 ? A 12.044 29.160 49.717 1 1 A ARG 0.690 1
ATOM 85 N NE . ARG 13 13 ? A 11.045 30.204 50.111 1 1 A ARG 0.690 1
ATOM 86 C CZ . ARG 13 13 ? A 10.405 30.997 49.241 1 1 A ARG 0.690 1
ATOM 87 N NH1 . ARG 13 13 ? A 10.582 30.895 47.928 1 1 A ARG 0.690 1
ATOM 88 N NH2 . ARG 13 13 ? A 9.578 31.933 49.706 1 1 A ARG 0.690 1
ATOM 89 N N . CYS 14 14 ? A 15.224 26.105 48.045 1 1 A CYS 0.830 1
ATOM 90 C CA . CYS 14 14 ? A 16.358 25.197 48.068 1 1 A CYS 0.830 1
ATOM 91 C C . CYS 14 14 ? A 16.722 24.906 49.501 1 1 A CYS 0.830 1
ATOM 92 O O . CYS 14 14 ? A 16.693 25.807 50.338 1 1 A CYS 0.830 1
ATOM 93 C CB . CYS 14 14 ? A 17.608 25.827 47.410 1 1 A CYS 0.830 1
ATOM 94 S SG . CYS 14 14 ? A 17.232 26.324 45.715 1 1 A CYS 0.830 1
ATOM 95 N N . ASN 15 15 ? A 17.067 23.649 49.818 1 1 A ASN 0.770 1
ATOM 96 C CA . ASN 15 15 ? A 17.425 23.244 51.161 1 1 A ASN 0.770 1
ATOM 97 C C . ASN 15 15 ? A 18.928 23.168 51.315 1 1 A ASN 0.770 1
ATOM 98 O O . ASN 15 15 ? A 19.417 23.089 52.441 1 1 A ASN 0.770 1
ATOM 99 C CB . ASN 15 15 ? A 16.865 21.835 51.470 1 1 A ASN 0.770 1
ATOM 100 C CG . ASN 15 15 ? A 15.370 21.917 51.726 1 1 A ASN 0.770 1
ATOM 101 O OD1 . ASN 15 15 ? A 14.762 22.962 51.944 1 1 A ASN 0.770 1
ATOM 102 N ND2 . ASN 15 15 ? A 14.725 20.731 51.765 1 1 A ASN 0.770 1
ATOM 103 N N . THR 16 16 ? A 19.713 23.211 50.211 1 1 A THR 0.830 1
ATOM 104 C CA . THR 16 16 ? A 21.173 23.216 50.289 1 1 A THR 0.830 1
ATOM 105 C C . THR 16 16 ? A 21.712 24.537 50.829 1 1 A THR 0.830 1
ATOM 106 O O . THR 16 16 ? A 21.493 25.576 50.201 1 1 A THR 0.830 1
ATOM 107 C CB . THR 16 16 ? A 21.863 22.913 48.970 1 1 A THR 0.830 1
ATOM 108 O OG1 . THR 16 16 ? A 21.649 21.565 48.607 1 1 A THR 0.830 1
ATOM 109 C CG2 . THR 16 16 ? A 23.390 22.950 49.064 1 1 A THR 0.830 1
ATOM 110 N N . PRO 17 17 ? A 22.429 24.602 51.958 1 1 A PRO 0.820 1
ATOM 111 C CA . PRO 17 17 ? A 23.030 25.827 52.462 1 1 A PRO 0.820 1
ATOM 112 C C . PRO 17 17 ? A 23.901 26.580 51.466 1 1 A PRO 0.820 1
ATOM 113 O O . PRO 17 17 ? A 24.715 25.993 50.748 1 1 A PRO 0.820 1
ATOM 114 C CB . PRO 17 17 ? A 23.812 25.405 53.715 1 1 A PRO 0.820 1
ATOM 115 C CG . PRO 17 17 ? A 23.104 24.129 54.172 1 1 A PRO 0.820 1
ATOM 116 C CD . PRO 17 17 ? A 22.676 23.480 52.858 1 1 A PRO 0.820 1
ATOM 117 N N . GLY 18 18 ? A 23.726 27.907 51.372 1 1 A GLY 0.840 1
ATOM 118 C CA . GLY 18 18 ? A 24.482 28.743 50.454 1 1 A GLY 0.840 1
ATOM 119 C C . GLY 18 18 ? A 23.903 28.779 49.071 1 1 A GLY 0.840 1
ATOM 120 O O . GLY 18 18 ? A 24.435 29.478 48.216 1 1 A GLY 0.840 1
ATOM 121 N N . CYS 19 19 ? A 22.815 28.027 48.805 1 1 A CYS 0.870 1
ATOM 122 C CA . CYS 19 19 ? A 22.164 28.003 47.513 1 1 A CYS 0.870 1
ATOM 123 C C . CYS 19 19 ? A 20.815 28.661 47.602 1 1 A CYS 0.870 1
ATOM 124 O O . CYS 19 19 ? A 20.180 28.705 48.650 1 1 A CYS 0.870 1
ATOM 125 C CB . CYS 19 19 ? A 21.985 26.572 46.964 1 1 A CYS 0.870 1
ATOM 126 S SG . CYS 19 19 ? A 23.606 25.837 46.614 1 1 A CYS 0.870 1
ATOM 127 N N . THR 20 20 ? A 20.354 29.234 46.487 1 1 A THR 0.820 1
ATOM 128 C CA . THR 20 20 ? A 19.099 29.959 46.454 1 1 A THR 0.820 1
ATOM 129 C C . THR 20 20 ? A 18.390 29.600 45.178 1 1 A THR 0.820 1
ATOM 130 O O . THR 20 20 ? A 19.003 29.075 44.252 1 1 A THR 0.820 1
ATOM 131 C CB . THR 20 20 ? A 19.306 31.465 46.566 1 1 A THR 0.820 1
ATOM 132 O OG1 . THR 20 20 ? A 18.076 32.131 46.796 1 1 A THR 0.820 1
ATOM 133 C CG2 . THR 20 20 ? A 19.951 32.064 45.300 1 1 A THR 0.820 1
ATOM 134 N N . CYS 21 21 ? A 17.068 29.828 45.092 1 1 A CYS 0.820 1
ATOM 135 C CA . CYS 21 21 ? A 16.293 29.386 43.949 1 1 A CYS 0.820 1
ATOM 136 C C . CYS 21 21 ? A 16.285 30.406 42.829 1 1 A CYS 0.820 1
ATOM 137 O O . CYS 21 21 ? A 15.608 31.427 42.898 1 1 A CYS 0.820 1
ATOM 138 C CB . CYS 21 21 ? A 14.827 29.051 44.332 1 1 A CYS 0.820 1
ATOM 139 S SG . CYS 21 21 ? A 13.930 28.194 42.998 1 1 A CYS 0.820 1
ATOM 140 N N . SER 22 22 ? A 16.989 30.100 41.724 1 1 A SER 0.760 1
ATOM 141 C CA . SER 22 22 ? A 16.778 30.786 40.461 1 1 A SER 0.760 1
ATOM 142 C C . SER 22 22 ? A 15.863 29.910 39.652 1 1 A SER 0.760 1
ATOM 143 O O . SER 22 22 ? A 16.331 29.000 38.971 1 1 A SER 0.760 1
ATOM 144 C CB . SER 22 22 ? A 18.067 30.959 39.627 1 1 A SER 0.760 1
ATOM 145 O OG . SER 22 22 ? A 19.080 31.626 40.369 1 1 A SER 0.760 1
ATOM 146 N N . TYR 23 23 ? A 14.527 30.120 39.759 1 1 A TYR 0.680 1
ATOM 147 C CA . TYR 23 23 ? A 13.530 29.125 39.385 1 1 A TYR 0.680 1
ATOM 148 C C . TYR 23 23 ? A 13.723 28.483 37.993 1 1 A TYR 0.680 1
ATOM 149 O O . TYR 23 23 ? A 13.771 29.200 36.994 1 1 A TYR 0.680 1
ATOM 150 C CB . TYR 23 23 ? A 12.070 29.660 39.602 1 1 A TYR 0.680 1
ATOM 151 C CG . TYR 23 23 ? A 10.980 28.767 39.035 1 1 A TYR 0.680 1
ATOM 152 C CD1 . TYR 23 23 ? A 10.401 29.091 37.794 1 1 A TYR 0.680 1
ATOM 153 C CD2 . TYR 23 23 ? A 10.572 27.586 39.684 1 1 A TYR 0.680 1
ATOM 154 C CE1 . TYR 23 23 ? A 9.429 28.263 37.213 1 1 A TYR 0.680 1
ATOM 155 C CE2 . TYR 23 23 ? A 9.598 26.757 39.104 1 1 A TYR 0.680 1
ATOM 156 C CZ . TYR 23 23 ? A 9.034 27.094 37.871 1 1 A TYR 0.680 1
ATOM 157 O OH . TYR 23 23 ? A 8.081 26.239 37.285 1 1 A TYR 0.680 1
ATOM 158 N N . PRO 24 24 ? A 13.840 27.158 37.860 1 1 A PRO 0.730 1
ATOM 159 C CA . PRO 24 24 ? A 13.566 26.153 38.888 1 1 A PRO 0.730 1
ATOM 160 C C . PRO 24 24 ? A 14.841 25.480 39.332 1 1 A PRO 0.730 1
ATOM 161 O O . PRO 24 24 ? A 14.767 24.354 39.820 1 1 A PRO 0.730 1
ATOM 162 C CB . PRO 24 24 ? A 12.696 25.150 38.130 1 1 A PRO 0.730 1
ATOM 163 C CG . PRO 24 24 ? A 13.265 25.155 36.707 1 1 A PRO 0.730 1
ATOM 164 C CD . PRO 24 24 ? A 13.746 26.597 36.511 1 1 A PRO 0.730 1
ATOM 165 N N . ILE 25 25 ? A 16.020 26.116 39.227 1 1 A ILE 0.790 1
ATOM 166 C CA . ILE 25 25 ? A 17.263 25.477 39.633 1 1 A ILE 0.790 1
ATOM 167 C C . ILE 25 25 ? A 17.890 26.225 40.792 1 1 A ILE 0.790 1
ATOM 168 O O . ILE 25 25 ? A 17.945 27.452 40.835 1 1 A ILE 0.790 1
ATOM 169 C CB . ILE 25 25 ? A 18.243 25.353 38.479 1 1 A ILE 0.790 1
ATOM 170 C CG1 . ILE 25 25 ? A 17.661 24.444 37.372 1 1 A ILE 0.790 1
ATOM 171 C CG2 . ILE 25 25 ? A 19.577 24.762 38.978 1 1 A ILE 0.790 1
ATOM 172 C CD1 . ILE 25 25 ? A 18.487 24.466 36.082 1 1 A ILE 0.790 1
ATOM 173 N N . CYS 26 26 ? A 18.393 25.486 41.800 1 1 A CYS 0.840 1
ATOM 174 C CA . CYS 26 26 ? A 19.191 26.068 42.859 1 1 A CYS 0.840 1
ATOM 175 C C . CYS 26 26 ? A 20.571 26.505 42.407 1 1 A CYS 0.840 1
ATOM 176 O O . CYS 26 26 ? A 21.310 25.764 41.765 1 1 A CYS 0.840 1
ATOM 177 C CB . CYS 26 26 ? A 19.346 25.090 44.030 1 1 A CYS 0.840 1
ATOM 178 S SG . CYS 26 26 ? A 17.704 24.677 44.648 1 1 A CYS 0.840 1
ATOM 179 N N . THR 27 27 ? A 20.959 27.744 42.743 1 1 A THR 0.840 1
ATOM 180 C CA . THR 27 27 ? A 22.202 28.348 42.275 1 1 A THR 0.840 1
ATOM 181 C C . THR 27 27 ? A 23.013 28.841 43.452 1 1 A THR 0.840 1
ATOM 182 O O . THR 27 27 ? A 22.479 29.170 44.497 1 1 A THR 0.840 1
ATOM 183 C CB . THR 27 27 ? A 22.004 29.545 41.347 1 1 A THR 0.840 1
ATOM 184 O OG1 . THR 27 27 ? A 21.308 30.604 41.999 1 1 A THR 0.840 1
ATOM 185 C CG2 . THR 27 27 ? A 21.256 29.093 40.078 1 1 A THR 0.840 1
ATOM 186 N N . ARG 28 28 ? A 24.351 28.920 43.282 1 1 A ARG 0.520 1
ATOM 187 C CA . ARG 28 28 ? A 25.217 29.505 44.289 1 1 A ARG 0.520 1
ATOM 188 C C . ARG 28 28 ? A 26.156 30.524 43.693 1 1 A ARG 0.520 1
ATOM 189 O O . ARG 28 28 ? A 27.110 30.121 43.003 1 1 A ARG 0.520 1
ATOM 190 C CB . ARG 28 28 ? A 26.128 28.439 44.910 1 1 A ARG 0.520 1
ATOM 191 C CG . ARG 28 28 ? A 27.122 29.062 45.916 1 1 A ARG 0.520 1
ATOM 192 C CD . ARG 28 28 ? A 27.992 28.038 46.599 1 1 A ARG 0.520 1
ATOM 193 N NE . ARG 28 28 ? A 27.063 27.222 47.442 1 1 A ARG 0.520 1
ATOM 194 C CZ . ARG 28 28 ? A 27.238 25.921 47.693 1 1 A ARG 0.520 1
ATOM 195 N NH1 . ARG 28 28 ? A 28.285 25.275 47.189 1 1 A ARG 0.520 1
ATOM 196 N NH2 . ARG 28 28 ? A 26.382 25.256 48.462 1 1 A ARG 0.520 1
ATOM 197 N N . ASN 29 29 ? A 25.986 31.806 43.974 1 1 A ASN 0.480 1
ATOM 198 C CA . ASN 29 29 ? A 26.711 32.920 43.320 1 1 A ASN 0.480 1
ATOM 199 C C . ASN 29 29 ? A 26.752 32.996 41.794 1 1 A ASN 0.480 1
ATOM 200 O O . ASN 29 29 ? A 26.712 31.945 41.111 1 1 A ASN 0.480 1
ATOM 201 C CB . ASN 29 29 ? A 28.219 33.014 43.486 1 1 A ASN 0.480 1
ATOM 202 C CG . ASN 29 29 ? A 28.550 32.986 44.930 1 1 A ASN 0.480 1
ATOM 203 O OD1 . ASN 29 29 ? A 27.930 33.581 45.812 1 1 A ASN 0.480 1
ATOM 204 N ND2 . ASN 29 29 ? A 29.609 32.197 45.182 1 1 A ASN 0.480 1
ATOM 205 O OXT . ASN 29 29 ? A 26.705 34.147 41.266 1 1 A ASN 0.480 1
#
#
loop_
_atom_type.symbol
C
N
O
S
#
#
loop_
_ma_qa_metric.id
_ma_qa_metric.name
_ma_qa_metric.description
_ma_qa_metric.type
_ma_qa_metric.mode
_ma_qa_metric.type_other_details
_ma_qa_metric.software_group_id
1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' local . 5
2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].'
'pLDDT all-atom in [0,1]' global . 5
3 GMQE
'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.'
'normalized score' global . 6
#
#
loop_
_ma_qa_metric_global.ordinal_id
_ma_qa_metric_global.model_id
_ma_qa_metric_global.metric_id
_ma_qa_metric_global.metric_value
1 1 2 0.740
2 1 3 0.783
#
#
loop_
_ma_qa_metric_local.ordinal_id
_ma_qa_metric_local.model_id
_ma_qa_metric_local.label_asym_id
_ma_qa_metric_local.label_seq_id
_ma_qa_metric_local.label_comp_id
_ma_qa_metric_local.metric_id
_ma_qa_metric_local.metric_value
1 1 A 1 GLY 1 0.490
2 1 A 2 LEU 1 0.490
3 1 A 3 PRO 1 0.700
4 1 A 4 VAL 1 0.800
5 1 A 5 CYS 1 0.840
6 1 A 6 GLY 1 0.730
7 1 A 7 GLU 1 0.760
8 1 A 8 THR 1 0.780
9 1 A 9 CYS 1 0.760
10 1 A 10 PHE 1 0.690
11 1 A 11 GLY 1 0.740
12 1 A 12 GLY 1 0.760
13 1 A 13 ARG 1 0.690
14 1 A 14 CYS 1 0.830
15 1 A 15 ASN 1 0.770
16 1 A 16 THR 1 0.830
17 1 A 17 PRO 1 0.820
18 1 A 18 GLY 1 0.840
19 1 A 19 CYS 1 0.870
20 1 A 20 THR 1 0.820
21 1 A 21 CYS 1 0.820
22 1 A 22 SER 1 0.760
23 1 A 23 TYR 1 0.680
24 1 A 24 PRO 1 0.730
25 1 A 25 ILE 1 0.790
26 1 A 26 CYS 1 0.840
27 1 A 27 THR 1 0.840
28 1 A 28 ARG 1 0.520
29 1 A 29 ASN 1 0.480
#
#
loop_
_pdbx_data_usage.id
_pdbx_data_usage.type
_pdbx_data_usage.details
_pdbx_data_usage.url
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