data_SMR-4ec182f1df45e1222196cb2d10ab2c19_5 _entry.id SMR-4ec182f1df45e1222196cb2d10ab2c19_5 _struct.entry_id SMR-4ec182f1df45e1222196cb2d10ab2c19_5 _struct.pdbx_model_details ;This model was generated unsupervised by the SWISS-MODEL homology-modelling pipeline for the SWISS-MODEL Repository, a database of annotated 3D protein structure models. The modelled monomer covers following UniProtKB entries: - P29101/ SYT2_RAT, Synaptotagmin-2 Estimated model accuracy of this model is 0.0, calculated by SWISS-MODEL as Global Model Quality Estimate (GMQE). ; _struct.pdbx_structure_determination_methodology computational _struct.title 'Model for UniProtKB entries P29101' _audit_conform.dict_location https://raw.githubusercontent.com/ihmwg/ModelCIF/80e1e22/dist/mmcif_ma.dic _audit_conform.dict_name mmcif_ma.dic _audit_conform.dict_version 1.4.7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SWISS-MODEL Repository - new features and functionality' 'Nucleic Acids Res.' 45 D313 D319 2017 27899672 10.1093/nar/gkw1132 2 'SWISS-MODEL: homology modelling of protein structures and complexes' 'Nucleic Acids Res.' 46 W296 W303 2018 29788355 10.1093/nar/gky427 3 'ProMod3 - A versatile homology modelling toolbox' 'PLoS Comput. Biol.' 17(1) 1 18 2021 33507980 10.1371/journal.pcbi.1008667 4 'QMEANDisCo - distance constraints applied on model quality estimation' Bioinformatics 36 1765 1771 2020 31697312 10.1093/bioinformatics/btz828 5 'OpenStructure: an integrated software framework for computational structural biology' 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' 69 701 709 2013 23633579 10.1107/S0907444913007051 6 'BLAST+: architecture and applications' 'BMC Bioinf.' 10 421 . 2009 20003500 10.1186/1471-2105-10-421 7 'HH-suite3 for fast remote homology detection and deep protein annotation' 'BMC Bioinf.' 20 473 . 2019 31521110 10.1186/s12859-019-3019-7 # # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bienert, S.' 1 primary 'Waterhouse, A.' 2 primary 'de Beer, T.A.P.' 3 primary 'Tauriello, G.' 4 primary 'Studer, G.' 5 primary 'Bordoli, L.' 6 primary 'Schwede, T.' 7 2 'Waterhouse, A.' 8 2 'Bertoni, M.' 9 2 'Bienert, S.' 10 2 'Studer, G.' 11 2 'Tauriello, G.' 12 2 'Gumienny, R.' 13 2 'Heer, F.T.' 14 2 'de Beer, T.A.P.' 15 2 'Rempfer, C.' 16 2 'Bordoli, L.' 17 2 'Lepore, R.' 18 2 'Schwede, T.' 19 3 'Studer, G.' 20 3 'Tauriello, G.' 21 3 'Bienert, S.' 22 3 'Biasini, M.' 23 3 'Johner, N.' 24 3 'Schwede, T.' 25 4 'Studer, G.' 26 4 'Rempfer, C.' 27 4 'Waterhouse, A.M.' 28 4 'Gumienny, R.' 29 4 'Haas, J.' 30 4 'Schwede, T.' 31 5 'Biasini, M.' 32 5 'Schmidt, T.' 33 5 'Bienert, S.' 34 5 'Mariani, V.' 35 5 'Studer, G.' 36 5 'Haas, J.' 37 5 'Johner, N.' 38 5 'Schenk, A.D.' 39 5 'Philippsen, A.' 40 5 'Schwede, T.' 41 6 'Camacho, C.' 42 6 'Coulouris, G.' 43 6 'Avagyan, V.' 44 6 'Ma, N.' 45 6 'Papadopoulos, J.' 46 6 'Bealer, K.' 47 6 'Madden, T.L.' 48 7 'Steinegger, M.' 49 7 'Meier, M.' 50 7 'Mirdita, M.' 51 7 'Vohringer, H.' 52 7 'Haunsberger, S.J.' 53 7 'Soding, J.' 54 # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location _software.citation_id 1 SWISS-MODEL 'model building' 'Homology modelling web service' 2025-06.4 package https://swissmodel.expasy.org 2 2 ProMod3 'model building' 'Modular homology modelling engine' 3.5.0 library https://git.scicore.unibas.ch/schwede/ProMod3 3 3 QMEAN 'model building' 'QMEAN - Qualitative Model Energy ANalysis' 4.4.0 library https://git.scicore.unibas.ch/schwede/QMEAN 4 4 OpenStructure 'data processing' 'Open-Source Computational Structural Biology Framework' 2.10.0 package https://openstructure.org/ 5 5 BLAST 'data collection' . 2.14.1 package https://blast.ncbi.nlm.nih.gov 6 6 HH-suite 'data collection' 'HH-suite3 for sensitive sequence searching' 3.2.0 package https://github.com/soedinglab/hh-suite 7 # # loop_ _ma_software_group.ordinal_id _ma_software_group.group_id _ma_software_group.software_id _ma_software_group.parameter_group_id 1 1 5 . 2 2 1 . 3 2 4 . 4 2 5 . 5 2 6 . 6 3 1 . 7 3 4 . 8 4 1 . 9 4 2 . 10 4 4 . 11 5 3 . 12 6 1 . 13 6 3 . 14 6 4 . # # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bienert, S.' 1 'Waterhouse, A.' 2 'de Beer, T.A.P.' 3 'Tauriello, G.' 4 'Studer, G.' 5 'Bordoli, L.' 6 'Schwede, T.' 7 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight _chem_comp.ma_provenance ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 'CCD Core' ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 'CCD Core' ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 'CCD Core' ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 'CCD Core' CYS 'L-peptide linking' CYSTEINE 'C3 H7 N O2 S' 121.154 'CCD Core' GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 'CCD Core' GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 'CCD Core' GLY 'peptide linking' GLYCINE 'C2 H5 N O2' 75.067 'CCD Core' HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 'CCD Core' ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 'CCD Core' LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 'CCD Core' MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 'CCD Core' PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 'CCD Core' PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 'CCD Core' SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 'CCD Core' THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 'CCD Core' TRP 'L-peptide linking' TRYPTOPHAN 'C11 H12 N2 O2' 204.229 'CCD Core' TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 'CCD Core' VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 'CCD Core' # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man . 54862.549 1 . # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP SYT2_RAT P29101 1 ;MRNIFKRNQEPIVAPATTTATMPLAPAAPADNSTESTGTGESQEDMFAKLKDKFFNEINKIPLPPWALIA MAVVAGLLLLTCCFCICKKCCCKKKKNKKEKGKGMKNAMNMKDMKGGQDDDDAETGLTEGEGEGEEEKEP ENLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNET FTFKVPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKEEPEKLGDICTS LRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPF EQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEEVDALLGK NK ; Synaptotagmin-2 # # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 422 1 422 # # loop_ _ma_target_ref_db_details.target_entity_id _ma_target_ref_db_details.db_name _ma_target_ref_db_details.db_name_other_details _ma_target_ref_db_details.db_code _ma_target_ref_db_details.db_accession _ma_target_ref_db_details.seq_db_isoform _ma_target_ref_db_details.seq_db_align_begin _ma_target_ref_db_details.seq_db_align_end _ma_target_ref_db_details.ncbi_taxonomy_id _ma_target_ref_db_details.organism_scientific _ma_target_ref_db_details.seq_db_sequence_version_date _ma_target_ref_db_details.seq_db_sequence_checksum _ma_target_ref_db_details.is_primary 1 UNP . SYT2_RAT P29101 . 1 422 10116 'Rattus norvegicus (Rat)' 1992-12-01 D852AF5387E0C7FD . # # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polypeptide(L) no no B ;MRNIFKRNQEPIVAPATTTATMPLAPAAPADNSTESTGTGESQEDMFAKLKDKFFNEINKIPLPPWALIA MAVVAGLLLLTCCFCICKKCCCKKKKNKKEKGKGMKNAMNMKDMKGGQDDDDAETGLTEGEGEGEEEKEP ENLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNET FTFKVPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKEEPEKLGDICTS LRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPF EQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEEVDALLGK NK ; ;MRNIFKRNQEPIVAPATTTATMPLAPAAPADNSTESTGTGESQEDMFAKLKDKFFNEINKIPLPPWALIA MAVVAGLLLLTCCFCICKKCCCKKKKNKKEKGKGMKNAMNMKDMKGGQDDDDAETGLTEGEGEGEEEKEP ENLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNET FTFKVPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKEEPEKLGDICTS LRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPF EQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEEVDALLGK NK ; # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET . 1 2 ARG . 1 3 ASN . 1 4 ILE . 1 5 PHE . 1 6 LYS . 1 7 ARG . 1 8 ASN . 1 9 GLN . 1 10 GLU . 1 11 PRO . 1 12 ILE . 1 13 VAL . 1 14 ALA . 1 15 PRO . 1 16 ALA . 1 17 THR . 1 18 THR . 1 19 THR . 1 20 ALA . 1 21 THR . 1 22 MET . 1 23 PRO . 1 24 LEU . 1 25 ALA . 1 26 PRO . 1 27 ALA . 1 28 ALA . 1 29 PRO . 1 30 ALA . 1 31 ASP . 1 32 ASN . 1 33 SER . 1 34 THR . 1 35 GLU . 1 36 SER . 1 37 THR . 1 38 GLY . 1 39 THR . 1 40 GLY . 1 41 GLU . 1 42 SER . 1 43 GLN . 1 44 GLU . 1 45 ASP . 1 46 MET . 1 47 PHE . 1 48 ALA . 1 49 LYS . 1 50 LEU . 1 51 LYS . 1 52 ASP . 1 53 LYS . 1 54 PHE . 1 55 PHE . 1 56 ASN . 1 57 GLU . 1 58 ILE . 1 59 ASN . 1 60 LYS . 1 61 ILE . 1 62 PRO . 1 63 LEU . 1 64 PRO . 1 65 PRO . 1 66 TRP . 1 67 ALA . 1 68 LEU . 1 69 ILE . 1 70 ALA . 1 71 MET . 1 72 ALA . 1 73 VAL . 1 74 VAL . 1 75 ALA . 1 76 GLY . 1 77 LEU . 1 78 LEU . 1 79 LEU . 1 80 LEU . 1 81 THR . 1 82 CYS . 1 83 CYS . 1 84 PHE . 1 85 CYS . 1 86 ILE . 1 87 CYS . 1 88 LYS . 1 89 LYS . 1 90 CYS . 1 91 CYS . 1 92 CYS . 1 93 LYS . 1 94 LYS . 1 95 LYS . 1 96 LYS . 1 97 ASN . 1 98 LYS . 1 99 LYS . 1 100 GLU . 1 101 LYS . 1 102 GLY . 1 103 LYS . 1 104 GLY . 1 105 MET . 1 106 LYS . 1 107 ASN . 1 108 ALA . 1 109 MET . 1 110 ASN . 1 111 MET . 1 112 LYS . 1 113 ASP . 1 114 MET . 1 115 LYS . 1 116 GLY . 1 117 GLY . 1 118 GLN . 1 119 ASP . 1 120 ASP . 1 121 ASP . 1 122 ASP . 1 123 ALA . 1 124 GLU . 1 125 THR . 1 126 GLY . 1 127 LEU . 1 128 THR . 1 129 GLU . 1 130 GLY . 1 131 GLU . 1 132 GLY . 1 133 GLU . 1 134 GLY . 1 135 GLU . 1 136 GLU . 1 137 GLU . 1 138 LYS . 1 139 GLU . 1 140 PRO . 1 141 GLU . 1 142 ASN . 1 143 LEU . 1 144 GLY . 1 145 LYS . 1 146 LEU . 1 147 GLN . 1 148 PHE . 1 149 SER . 1 150 LEU . 1 151 ASP . 1 152 TYR . 1 153 ASP . 1 154 PHE . 1 155 GLN . 1 156 ALA . 1 157 ASN . 1 158 GLN . 1 159 LEU . 1 160 THR . 1 161 VAL . 1 162 GLY . 1 163 VAL . 1 164 LEU . 1 165 GLN . 1 166 ALA . 1 167 ALA . 1 168 GLU . 1 169 LEU . 1 170 PRO . 1 171 ALA . 1 172 LEU . 1 173 ASP . 1 174 MET . 1 175 GLY . 1 176 GLY . 1 177 THR . 1 178 SER . 1 179 ASP . 1 180 PRO . 1 181 TYR . 1 182 VAL . 1 183 LYS . 1 184 VAL . 1 185 PHE . 1 186 LEU . 1 187 LEU . 1 188 PRO . 1 189 ASP . 1 190 LYS . 1 191 LYS . 1 192 LYS . 1 193 LYS . 1 194 TYR . 1 195 GLU . 1 196 THR . 1 197 LYS . 1 198 VAL . 1 199 HIS . 1 200 ARG . 1 201 LYS . 1 202 THR . 1 203 LEU . 1 204 ASN . 1 205 PRO . 1 206 ALA . 1 207 PHE . 1 208 ASN . 1 209 GLU . 1 210 THR . 1 211 PHE . 1 212 THR . 1 213 PHE . 1 214 LYS . 1 215 VAL . 1 216 PRO . 1 217 TYR . 1 218 GLN . 1 219 GLU . 1 220 LEU . 1 221 GLY . 1 222 GLY . 1 223 LYS . 1 224 THR . 1 225 LEU . 1 226 VAL . 1 227 MET . 1 228 ALA . 1 229 ILE . 1 230 TYR . 1 231 ASP . 1 232 PHE . 1 233 ASP . 1 234 ARG . 1 235 PHE . 1 236 SER . 1 237 LYS . 1 238 HIS . 1 239 ASP . 1 240 ILE . 1 241 ILE . 1 242 GLY . 1 243 GLU . 1 244 VAL . 1 245 LYS . 1 246 VAL . 1 247 PRO . 1 248 MET . 1 249 ASN . 1 250 THR . 1 251 VAL . 1 252 ASP . 1 253 LEU . 1 254 GLY . 1 255 GLN . 1 256 PRO . 1 257 ILE . 1 258 GLU . 1 259 GLU . 1 260 TRP . 1 261 ARG . 1 262 ASP . 1 263 LEU . 1 264 GLN . 1 265 GLY . 1 266 GLY . 1 267 GLU . 1 268 LYS . 1 269 GLU . 1 270 GLU . 1 271 PRO . 1 272 GLU . 1 273 LYS . 1 274 LEU . 1 275 GLY . 1 276 ASP . 1 277 ILE . 1 278 CYS . 1 279 THR . 1 280 SER . 1 281 LEU . 1 282 ARG . 1 283 TYR . 1 284 VAL . 1 285 PRO . 1 286 THR . 1 287 ALA . 1 288 GLY . 1 289 LYS . 1 290 LEU . 1 291 THR . 1 292 VAL . 1 293 CYS . 1 294 ILE . 1 295 LEU . 1 296 GLU . 1 297 ALA . 1 298 LYS . 1 299 ASN . 1 300 LEU . 1 301 LYS . 1 302 LYS . 1 303 MET . 1 304 ASP . 1 305 VAL . 1 306 GLY . 1 307 GLY . 1 308 LEU . 1 309 SER . 1 310 ASP . 1 311 PRO . 1 312 TYR . 1 313 VAL . 1 314 LYS . 1 315 ILE . 1 316 HIS . 1 317 LEU . 1 318 MET . 1 319 GLN . 1 320 ASN . 1 321 GLY . 1 322 LYS . 1 323 ARG . 1 324 LEU . 1 325 LYS . 1 326 LYS . 1 327 LYS . 1 328 LYS . 1 329 THR . 1 330 THR . 1 331 VAL . 1 332 LYS . 1 333 LYS . 1 334 LYS . 1 335 THR . 1 336 LEU . 1 337 ASN . 1 338 PRO . 1 339 TYR . 1 340 PHE . 1 341 ASN . 1 342 GLU . 1 343 SER . 1 344 PHE . 1 345 SER . 1 346 PHE . 1 347 GLU . 1 348 ILE . 1 349 PRO . 1 350 PHE . 1 351 GLU . 1 352 GLN . 1 353 ILE . 1 354 GLN . 1 355 LYS . 1 356 VAL . 1 357 GLN . 1 358 VAL . 1 359 VAL . 1 360 VAL . 1 361 THR . 1 362 VAL . 1 363 LEU . 1 364 ASP . 1 365 TYR . 1 366 ASP . 1 367 LYS . 1 368 LEU . 1 369 GLY . 1 370 LYS . 1 371 ASN . 1 372 GLU . 1 373 ALA . 1 374 ILE . 1 375 GLY . 1 376 LYS . 1 377 ILE . 1 378 PHE . 1 379 VAL . 1 380 GLY . 1 381 SER . 1 382 ASN . 1 383 ALA . 1 384 THR . 1 385 GLY . 1 386 THR . 1 387 GLU . 1 388 LEU . 1 389 ARG . 1 390 HIS . 1 391 TRP . 1 392 SER . 1 393 ASP . 1 394 MET . 1 395 LEU . 1 396 ALA . 1 397 ASN . 1 398 PRO . 1 399 ARG . 1 400 ARG . 1 401 PRO . 1 402 ILE . 1 403 ALA . 1 404 GLN . 1 405 TRP . 1 406 HIS . 1 407 SER . 1 408 LEU . 1 409 LYS . 1 410 PRO . 1 411 GLU . 1 412 GLU . 1 413 GLU . 1 414 VAL . 1 415 ASP . 1 416 ALA . 1 417 LEU . 1 418 LEU . 1 419 GLY . 1 420 LYS . 1 421 ASN . 1 422 LYS . # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 . # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 ? ? ? B . A 1 2 ARG 2 ? ? ? B . A 1 3 ASN 3 ? ? ? B . A 1 4 ILE 4 ? ? ? B . A 1 5 PHE 5 ? ? ? B . A 1 6 LYS 6 ? ? ? B . A 1 7 ARG 7 ? ? ? B . A 1 8 ASN 8 ? ? ? B . A 1 9 GLN 9 ? ? ? B . A 1 10 GLU 10 ? ? ? B . A 1 11 PRO 11 ? ? ? B . A 1 12 ILE 12 ? ? ? B . A 1 13 VAL 13 ? ? ? B . A 1 14 ALA 14 ? ? ? B . A 1 15 PRO 15 ? ? ? B . A 1 16 ALA 16 ? ? ? B . A 1 17 THR 17 ? ? ? B . A 1 18 THR 18 ? ? ? B . A 1 19 THR 19 ? ? ? B . A 1 20 ALA 20 ? ? ? B . A 1 21 THR 21 ? ? ? B . A 1 22 MET 22 ? ? ? B . A 1 23 PRO 23 ? ? ? B . A 1 24 LEU 24 ? ? ? B . A 1 25 ALA 25 ? ? ? B . A 1 26 PRO 26 ? ? ? B . A 1 27 ALA 27 ? ? ? B . A 1 28 ALA 28 ? ? ? B . A 1 29 PRO 29 ? ? ? B . A 1 30 ALA 30 ? ? ? B . A 1 31 ASP 31 ? ? ? B . A 1 32 ASN 32 ? ? ? B . A 1 33 SER 33 ? ? ? B . A 1 34 THR 34 ? ? ? B . A 1 35 GLU 35 ? ? ? B . A 1 36 SER 36 ? ? ? B . A 1 37 THR 37 ? ? ? B . A 1 38 GLY 38 ? ? ? B . A 1 39 THR 39 ? ? ? B . A 1 40 GLY 40 ? ? ? B . A 1 41 GLU 41 41 GLU GLU B . A 1 42 SER 42 42 SER SER B . A 1 43 GLN 43 43 GLN GLN B . A 1 44 GLU 44 44 GLU GLU B . A 1 45 ASP 45 45 ASP ASP B . A 1 46 MET 46 46 MET MET B . A 1 47 PHE 47 47 PHE PHE B . A 1 48 ALA 48 48 ALA ALA B . A 1 49 LYS 49 49 LYS LYS B . A 1 50 LEU 50 50 LEU LEU B . A 1 51 LYS 51 51 LYS LYS B . A 1 52 ASP 52 52 ASP ASP B . A 1 53 LYS 53 53 LYS LYS B . A 1 54 PHE 54 54 PHE PHE B . A 1 55 PHE 55 55 PHE PHE B . A 1 56 ASN 56 56 ASN ASN B . A 1 57 GLU 57 ? ? ? B . A 1 58 ILE 58 ? ? ? B . A 1 59 ASN 59 ? ? ? B . A 1 60 LYS 60 ? ? ? B . A 1 61 ILE 61 ? ? ? B . A 1 62 PRO 62 ? ? ? B . A 1 63 LEU 63 ? ? ? B . A 1 64 PRO 64 ? ? ? B . A 1 65 PRO 65 ? ? ? B . A 1 66 TRP 66 ? ? ? B . A 1 67 ALA 67 ? ? ? B . A 1 68 LEU 68 ? ? ? B . A 1 69 ILE 69 ? ? ? B . A 1 70 ALA 70 ? ? ? B . A 1 71 MET 71 ? ? ? B . A 1 72 ALA 72 ? ? ? B . A 1 73 VAL 73 ? ? ? B . A 1 74 VAL 74 ? ? ? B . A 1 75 ALA 75 ? ? ? B . A 1 76 GLY 76 ? ? ? B . A 1 77 LEU 77 ? ? ? B . A 1 78 LEU 78 ? ? ? B . A 1 79 LEU 79 ? ? ? B . A 1 80 LEU 80 ? ? ? B . A 1 81 THR 81 ? ? ? B . A 1 82 CYS 82 ? ? ? B . A 1 83 CYS 83 ? ? ? B . A 1 84 PHE 84 ? ? ? B . A 1 85 CYS 85 ? ? ? B . A 1 86 ILE 86 ? ? ? B . A 1 87 CYS 87 ? ? ? B . A 1 88 LYS 88 ? ? ? B . A 1 89 LYS 89 ? ? ? B . A 1 90 CYS 90 ? ? ? B . A 1 91 CYS 91 ? ? ? B . A 1 92 CYS 92 ? ? ? B . A 1 93 LYS 93 ? ? ? B . A 1 94 LYS 94 ? ? ? B . A 1 95 LYS 95 ? ? ? B . A 1 96 LYS 96 ? ? ? B . A 1 97 ASN 97 ? ? ? B . A 1 98 LYS 98 ? ? ? B . A 1 99 LYS 99 ? ? ? B . A 1 100 GLU 100 ? ? ? B . A 1 101 LYS 101 ? ? ? B . A 1 102 GLY 102 ? ? ? B . A 1 103 LYS 103 ? ? ? B . A 1 104 GLY 104 ? ? ? B . A 1 105 MET 105 ? ? ? B . A 1 106 LYS 106 ? ? ? B . A 1 107 ASN 107 ? ? ? B . A 1 108 ALA 108 ? ? ? B . A 1 109 MET 109 ? ? ? B . A 1 110 ASN 110 ? ? ? B . A 1 111 MET 111 ? ? ? B . A 1 112 LYS 112 ? ? ? B . A 1 113 ASP 113 ? ? ? B . A 1 114 MET 114 ? ? ? B . A 1 115 LYS 115 ? ? ? B . A 1 116 GLY 116 ? ? ? B . A 1 117 GLY 117 ? ? ? B . A 1 118 GLN 118 ? ? ? B . A 1 119 ASP 119 ? ? ? B . A 1 120 ASP 120 ? ? ? B . A 1 121 ASP 121 ? ? ? B . A 1 122 ASP 122 ? ? ? B . A 1 123 ALA 123 ? ? ? B . A 1 124 GLU 124 ? ? ? B . A 1 125 THR 125 ? ? ? B . A 1 126 GLY 126 ? ? ? B . A 1 127 LEU 127 ? ? ? B . A 1 128 THR 128 ? ? ? B . A 1 129 GLU 129 ? ? ? B . A 1 130 GLY 130 ? ? ? B . A 1 131 GLU 131 ? ? ? B . A 1 132 GLY 132 ? ? ? B . A 1 133 GLU 133 ? ? ? B . A 1 134 GLY 134 ? ? ? B . A 1 135 GLU 135 ? ? ? B . A 1 136 GLU 136 ? ? ? B . A 1 137 GLU 137 ? ? ? B . A 1 138 LYS 138 ? ? ? B . A 1 139 GLU 139 ? ? ? B . A 1 140 PRO 140 ? ? ? B . A 1 141 GLU 141 ? ? ? B . A 1 142 ASN 142 ? ? ? B . A 1 143 LEU 143 ? ? ? B . A 1 144 GLY 144 ? ? ? B . A 1 145 LYS 145 ? ? ? B . A 1 146 LEU 146 ? ? ? B . A 1 147 GLN 147 ? ? ? B . A 1 148 PHE 148 ? ? ? B . A 1 149 SER 149 ? ? ? B . A 1 150 LEU 150 ? ? ? B . A 1 151 ASP 151 ? ? ? B . A 1 152 TYR 152 ? ? ? B . A 1 153 ASP 153 ? ? ? B . A 1 154 PHE 154 ? ? ? B . A 1 155 GLN 155 ? ? ? B . A 1 156 ALA 156 ? ? ? B . A 1 157 ASN 157 ? ? ? B . A 1 158 GLN 158 ? ? ? B . A 1 159 LEU 159 ? ? ? B . A 1 160 THR 160 ? ? ? B . A 1 161 VAL 161 ? ? ? B . A 1 162 GLY 162 ? ? ? B . A 1 163 VAL 163 ? ? ? B . A 1 164 LEU 164 ? ? ? B . A 1 165 GLN 165 ? ? ? B . A 1 166 ALA 166 ? ? ? B . A 1 167 ALA 167 ? ? ? B . A 1 168 GLU 168 ? ? ? B . A 1 169 LEU 169 ? ? ? B . A 1 170 PRO 170 ? ? ? B . A 1 171 ALA 171 ? ? ? B . A 1 172 LEU 172 ? ? ? B . A 1 173 ASP 173 ? ? ? B . A 1 174 MET 174 ? ? ? B . A 1 175 GLY 175 ? ? ? B . A 1 176 GLY 176 ? ? ? B . A 1 177 THR 177 ? ? ? B . A 1 178 SER 178 ? ? ? B . A 1 179 ASP 179 ? ? ? B . A 1 180 PRO 180 ? ? ? B . A 1 181 TYR 181 ? ? ? B . A 1 182 VAL 182 ? ? ? B . A 1 183 LYS 183 ? ? ? B . A 1 184 VAL 184 ? ? ? B . A 1 185 PHE 185 ? ? ? B . A 1 186 LEU 186 ? ? ? B . A 1 187 LEU 187 ? ? ? B . A 1 188 PRO 188 ? ? ? B . A 1 189 ASP 189 ? ? ? B . A 1 190 LYS 190 ? ? ? B . A 1 191 LYS 191 ? ? ? B . A 1 192 LYS 192 ? ? ? B . A 1 193 LYS 193 ? ? ? B . A 1 194 TYR 194 ? ? ? B . A 1 195 GLU 195 ? ? ? B . A 1 196 THR 196 ? ? ? B . A 1 197 LYS 197 ? ? ? B . A 1 198 VAL 198 ? ? ? B . A 1 199 HIS 199 ? ? ? B . A 1 200 ARG 200 ? ? ? B . A 1 201 LYS 201 ? ? ? B . A 1 202 THR 202 ? ? ? B . A 1 203 LEU 203 ? ? ? B . A 1 204 ASN 204 ? ? ? B . A 1 205 PRO 205 ? ? ? B . A 1 206 ALA 206 ? ? ? B . A 1 207 PHE 207 ? ? ? B . A 1 208 ASN 208 ? ? ? B . A 1 209 GLU 209 ? ? ? B . A 1 210 THR 210 ? ? ? B . A 1 211 PHE 211 ? ? ? B . A 1 212 THR 212 ? ? ? B . A 1 213 PHE 213 ? ? ? B . A 1 214 LYS 214 ? ? ? B . A 1 215 VAL 215 ? ? ? B . A 1 216 PRO 216 ? ? ? B . A 1 217 TYR 217 ? ? ? B . A 1 218 GLN 218 ? ? ? B . A 1 219 GLU 219 ? ? ? B . A 1 220 LEU 220 ? ? ? B . A 1 221 GLY 221 ? ? ? B . A 1 222 GLY 222 ? ? ? B . A 1 223 LYS 223 ? ? ? B . A 1 224 THR 224 ? ? ? B . A 1 225 LEU 225 ? ? ? B . A 1 226 VAL 226 ? ? ? B . A 1 227 MET 227 ? ? ? B . A 1 228 ALA 228 ? ? ? B . A 1 229 ILE 229 ? ? ? B . A 1 230 TYR 230 ? ? ? B . A 1 231 ASP 231 ? ? ? B . A 1 232 PHE 232 ? ? ? B . A 1 233 ASP 233 ? ? ? B . A 1 234 ARG 234 ? ? ? B . A 1 235 PHE 235 ? ? ? B . A 1 236 SER 236 ? ? ? B . A 1 237 LYS 237 ? ? ? B . A 1 238 HIS 238 ? ? ? B . A 1 239 ASP 239 ? ? ? B . A 1 240 ILE 240 ? ? ? B . A 1 241 ILE 241 ? ? ? B . A 1 242 GLY 242 ? ? ? B . A 1 243 GLU 243 ? ? ? B . A 1 244 VAL 244 ? ? ? B . A 1 245 LYS 245 ? ? ? B . A 1 246 VAL 246 ? ? ? B . A 1 247 PRO 247 ? ? ? B . A 1 248 MET 248 ? ? ? B . A 1 249 ASN 249 ? ? ? B . A 1 250 THR 250 ? ? ? B . A 1 251 VAL 251 ? ? ? B . A 1 252 ASP 252 ? ? ? B . A 1 253 LEU 253 ? ? ? B . A 1 254 GLY 254 ? ? ? B . A 1 255 GLN 255 ? ? ? B . A 1 256 PRO 256 ? ? ? B . A 1 257 ILE 257 ? ? ? B . A 1 258 GLU 258 ? ? ? B . A 1 259 GLU 259 ? ? ? B . A 1 260 TRP 260 ? ? ? B . A 1 261 ARG 261 ? ? ? B . A 1 262 ASP 262 ? ? ? B . A 1 263 LEU 263 ? ? ? B . A 1 264 GLN 264 ? ? ? B . A 1 265 GLY 265 ? ? ? B . A 1 266 GLY 266 ? ? ? B . A 1 267 GLU 267 ? ? ? B . A 1 268 LYS 268 ? ? ? B . A 1 269 GLU 269 ? ? ? B . A 1 270 GLU 270 ? ? ? B . A 1 271 PRO 271 ? ? ? B . A 1 272 GLU 272 ? ? ? B . A 1 273 LYS 273 ? ? ? B . A 1 274 LEU 274 ? ? ? B . A 1 275 GLY 275 ? ? ? B . A 1 276 ASP 276 ? ? ? B . A 1 277 ILE 277 ? ? ? B . A 1 278 CYS 278 ? ? ? B . A 1 279 THR 279 ? ? ? B . A 1 280 SER 280 ? ? ? B . A 1 281 LEU 281 ? ? ? B . A 1 282 ARG 282 ? ? ? B . A 1 283 TYR 283 ? ? ? B . A 1 284 VAL 284 ? ? ? B . A 1 285 PRO 285 ? ? ? B . A 1 286 THR 286 ? ? ? B . A 1 287 ALA 287 ? ? ? B . A 1 288 GLY 288 ? ? ? B . A 1 289 LYS 289 ? ? ? B . A 1 290 LEU 290 ? ? ? B . A 1 291 THR 291 ? ? ? B . A 1 292 VAL 292 ? ? ? B . A 1 293 CYS 293 ? ? ? B . A 1 294 ILE 294 ? ? ? B . A 1 295 LEU 295 ? ? ? B . A 1 296 GLU 296 ? ? ? B . A 1 297 ALA 297 ? ? ? B . A 1 298 LYS 298 ? ? ? B . A 1 299 ASN 299 ? ? ? B . A 1 300 LEU 300 ? ? ? B . A 1 301 LYS 301 ? ? ? B . A 1 302 LYS 302 ? ? ? B . A 1 303 MET 303 ? ? ? B . A 1 304 ASP 304 ? ? ? B . A 1 305 VAL 305 ? ? ? B . A 1 306 GLY 306 ? ? ? B . A 1 307 GLY 307 ? ? ? B . A 1 308 LEU 308 ? ? ? B . A 1 309 SER 309 ? ? ? B . A 1 310 ASP 310 ? ? ? B . A 1 311 PRO 311 ? ? ? B . A 1 312 TYR 312 ? ? ? B . A 1 313 VAL 313 ? ? ? B . A 1 314 LYS 314 ? ? ? B . A 1 315 ILE 315 ? ? ? B . A 1 316 HIS 316 ? ? ? B . A 1 317 LEU 317 ? ? ? B . A 1 318 MET 318 ? ? ? B . A 1 319 GLN 319 ? ? ? B . A 1 320 ASN 320 ? ? ? B . A 1 321 GLY 321 ? ? ? B . A 1 322 LYS 322 ? ? ? B . A 1 323 ARG 323 ? ? ? B . A 1 324 LEU 324 ? ? ? B . A 1 325 LYS 325 ? ? ? B . A 1 326 LYS 326 ? ? ? B . A 1 327 LYS 327 ? ? ? B . A 1 328 LYS 328 ? ? ? B . A 1 329 THR 329 ? ? ? B . A 1 330 THR 330 ? ? ? B . A 1 331 VAL 331 ? ? ? B . A 1 332 LYS 332 ? ? ? B . A 1 333 LYS 333 ? ? ? B . A 1 334 LYS 334 ? ? ? B . A 1 335 THR 335 ? ? ? B . A 1 336 LEU 336 ? ? ? B . A 1 337 ASN 337 ? ? ? B . A 1 338 PRO 338 ? ? ? B . A 1 339 TYR 339 ? ? ? B . A 1 340 PHE 340 ? ? ? B . A 1 341 ASN 341 ? ? ? B . A 1 342 GLU 342 ? ? ? B . A 1 343 SER 343 ? ? ? B . A 1 344 PHE 344 ? ? ? B . A 1 345 SER 345 ? ? ? B . A 1 346 PHE 346 ? ? ? B . A 1 347 GLU 347 ? ? ? B . A 1 348 ILE 348 ? ? ? B . A 1 349 PRO 349 ? ? ? B . A 1 350 PHE 350 ? ? ? B . A 1 351 GLU 351 ? ? ? B . A 1 352 GLN 352 ? ? ? B . A 1 353 ILE 353 ? ? ? B . A 1 354 GLN 354 ? ? ? B . A 1 355 LYS 355 ? ? ? B . A 1 356 VAL 356 ? ? ? B . A 1 357 GLN 357 ? ? ? B . A 1 358 VAL 358 ? ? ? B . A 1 359 VAL 359 ? ? ? B . A 1 360 VAL 360 ? ? ? B . A 1 361 THR 361 ? ? ? B . A 1 362 VAL 362 ? ? ? B . A 1 363 LEU 363 ? ? ? B . A 1 364 ASP 364 ? ? ? B . A 1 365 TYR 365 ? ? ? B . A 1 366 ASP 366 ? ? ? B . A 1 367 LYS 367 ? ? ? B . A 1 368 LEU 368 ? ? ? B . A 1 369 GLY 369 ? ? ? B . A 1 370 LYS 370 ? ? ? B . A 1 371 ASN 371 ? ? ? B . A 1 372 GLU 372 ? ? ? B . A 1 373 ALA 373 ? ? ? B . A 1 374 ILE 374 ? ? ? B . A 1 375 GLY 375 ? ? ? B . A 1 376 LYS 376 ? ? ? B . A 1 377 ILE 377 ? ? ? B . A 1 378 PHE 378 ? ? ? B . A 1 379 VAL 379 ? ? ? B . A 1 380 GLY 380 ? ? ? B . A 1 381 SER 381 ? ? ? B . A 1 382 ASN 382 ? ? ? B . A 1 383 ALA 383 ? ? ? B . A 1 384 THR 384 ? ? ? B . A 1 385 GLY 385 ? ? ? B . A 1 386 THR 386 ? ? ? B . A 1 387 GLU 387 ? ? ? B . A 1 388 LEU 388 ? ? ? B . A 1 389 ARG 389 ? ? ? B . A 1 390 HIS 390 ? ? ? B . A 1 391 TRP 391 ? ? ? B . A 1 392 SER 392 ? ? ? B . A 1 393 ASP 393 ? ? ? B . A 1 394 MET 394 ? ? ? B . A 1 395 LEU 395 ? ? ? B . A 1 396 ALA 396 ? ? ? B . A 1 397 ASN 397 ? ? ? B . A 1 398 PRO 398 ? ? ? B . A 1 399 ARG 399 ? ? ? B . A 1 400 ARG 400 ? ? ? B . A 1 401 PRO 401 ? ? ? B . A 1 402 ILE 402 ? ? ? B . A 1 403 ALA 403 ? ? ? B . A 1 404 GLN 404 ? ? ? B . A 1 405 TRP 405 ? ? ? B . A 1 406 HIS 406 ? ? ? B . A 1 407 SER 407 ? ? ? B . A 1 408 LEU 408 ? ? ? B . A 1 409 LYS 409 ? ? ? B . A 1 410 PRO 410 ? ? ? B . A 1 411 GLU 411 ? ? ? B . A 1 412 GLU 412 ? ? ? B . A 1 413 GLU 413 ? ? ? B . A 1 414 VAL 414 ? ? ? B . A 1 415 ASP 415 ? ? ? B . A 1 416 ALA 416 ? ? ? B . A 1 417 LEU 417 ? ? ? B . A 1 418 LEU 418 ? ? ? B . A 1 419 GLY 419 ? ? ? B . A 1 420 LYS 420 ? ? ? B . A 1 421 ASN 421 ? ? ? B . A 1 422 LYS 422 ? ? ? B . # # loop_ _ma_data.id _ma_data.name _ma_data.content_type _ma_data.content_type_other_details 1 'Synaptotagmin-1 {PDB ID=8b8i, label_asym_id=K, auth_asym_id=K, SMTL ID=8b8i.3.B}' 'template structure' . 2 . target . 3 'Target-template alignment by BLAST to 8b8i, label_asym_id=K' 'target-template alignment' . 4 'model 5' 'model coordinates' . 5 SMTL 'reference database' . 6 PDB 'reference database' . 7 'Template search output' other 'Results of the sequence search' # # loop_ _ma_data_group.ordinal_id _ma_data_group.group_id _ma_data_group.data_id 1 1 2 2 1 5 3 1 6 4 2 7 5 3 2 6 3 1 7 3 3 8 4 1 9 4 3 10 5 4 # # loop_ _ma_data_ref_db.data_id _ma_data_ref_db.name _ma_data_ref_db.location_url _ma_data_ref_db.version _ma_data_ref_db.release_date 5 SMTL https://swissmodel.expasy.org/templates/ . 2025-07-02 6 PDB https://www.wwpdb.org . 2025-06-27 # # loop_ _ma_target_entity.entity_id _ma_target_entity.data_id _ma_target_entity.origin 1 2 'reference database' # # loop_ _ma_target_entity_instance.asym_id _ma_target_entity_instance.entity_id _ma_target_entity_instance.details A 1 . # # loop_ _ma_template_trans_matrix.id _ma_template_trans_matrix.rot_matrix[1][1] _ma_template_trans_matrix.rot_matrix[2][1] _ma_template_trans_matrix.rot_matrix[3][1] _ma_template_trans_matrix.rot_matrix[1][2] _ma_template_trans_matrix.rot_matrix[2][2] _ma_template_trans_matrix.rot_matrix[3][2] _ma_template_trans_matrix.rot_matrix[1][3] _ma_template_trans_matrix.rot_matrix[2][3] _ma_template_trans_matrix.rot_matrix[3][3] _ma_template_trans_matrix.tr_vector[1] _ma_template_trans_matrix.tr_vector[2] _ma_template_trans_matrix.tr_vector[3] 1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0 0 0 # # loop_ _ma_template_details.ordinal_id _ma_template_details.template_id _ma_template_details.template_origin _ma_template_details.template_entity_type _ma_template_details.template_trans_matrix_id _ma_template_details.template_data_id _ma_template_details.target_asym_id _ma_template_details.template_label_asym_id _ma_template_details.template_label_entity_id _ma_template_details.template_model_num _ma_template_details.template_auth_asym_id 1 1 'reference database' polymer 1 1 A K 2 1 K # # loop_ _ma_template_poly.template_id _ma_template_poly.seq_one_letter_code _ma_template_poly.seq_one_letter_code_can 1 MVSESHHEALAAPPVTTVATVLPSNATEPASPGEGKEDAFSKLKEKFMNELHKIPLPPWA MVSESHHEALAAPPVTTVATVLPSNATEPASPGEGKEDAFSKLKEKFMNELHKIPLPPWA # # loop_ _ma_template_poly_segment.id _ma_template_poly_segment.template_id _ma_template_poly_segment.residue_number_begin _ma_template_poly_segment.residue_number_end 1 1 24 60 # # loop_ _ma_template_ref_db_details.template_id _ma_template_ref_db_details.db_name _ma_template_ref_db_details.db_name_other_details _ma_template_ref_db_details.db_accession_code _ma_template_ref_db_details.db_version_date 1 PDB . 8b8i 2024-11-20 # # loop_ _ma_target_template_poly_mapping.id _ma_target_template_poly_mapping.template_segment_id _ma_target_template_poly_mapping.target_asym_id _ma_target_template_poly_mapping.target_seq_id_begin _ma_target_template_poly_mapping.target_seq_id_end 1 1 A 1 422 # # loop_ _ma_alignment_info.alignment_id _ma_alignment_info.data_id _ma_alignment_info.software_group_id _ma_alignment_info.alignment_length _ma_alignment_info.alignment_type _ma_alignment_info.alignment_mode 1 3 1 422 'target-template pairwise alignment' local # # loop_ _ma_alignment_details.ordinal_id _ma_alignment_details.alignment_id _ma_alignment_details.template_segment_id _ma_alignment_details.target_asym_id _ma_alignment_details.score_type _ma_alignment_details.score_type_other_details _ma_alignment_details.score_value _ma_alignment_details.percent_sequence_identity _ma_alignment_details.sequence_identity_denominator _ma_alignment_details.sequence_identity_denominator_other_details 1 1 1 A 'BLAST e-value' . 5.82e-10 62.162 'Number of aligned residue pairs (not including the gaps)' . # # loop_ _ma_alignment.ordinal_id _ma_alignment.alignment_id _ma_alignment.target_template_flag _ma_alignment.sequence 1 1 1 MRNIFKRNQEPIVAPATTTATMPLAPAAPADNSTESTGTGESQEDMFAKLKDKFFNEINKIPLPPWALIAMAVVAGLLLLTCCFCICKKCCCKKKKNKKEKGKGMKNAMNMKDMKGGQDDDDAETGLTEGEGEGEEEKEPENLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNETFTFKVPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEEVDALLGKNK 2 1 2 ------------------------------SNATEPASPGEGKEDAFSKLKEKFMNELHKIPLPPWA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # # loop_ _ma_protocol_step.ordinal_id _ma_protocol_step.protocol_id _ma_protocol_step.step_id _ma_protocol_step.method_type _ma_protocol_step.step_name _ma_protocol_step.details _ma_protocol_step.software_group_id _ma_protocol_step.input_data_group_id _ma_protocol_step.output_data_group_id 1 1 1 'template search' 'template search' 'SWISS-MODEL template search in PDB' 2 1 2 2 1 2 'template selection' 'template selection' 'Automatic template selection by SWISS-MODEL {QSQE=0.000}' 3 2 4 3 1 3 modeling 'homology modeling' 'SWISS-MODEL auto-model mode using ProMod3 on 8b8i.3' 4 3 5 # # loop_ _ma_model_list.ordinal_id _ma_model_list.model_name _ma_model_list.data_id _ma_model_list.model_type _ma_model_list.model_type_other_details 1 'model 5' 4 'Homology model' . # # loop_ _ma_model_group.id _ma_model_group.name _ma_model_group.details 1 . . # # loop_ _ma_model_group_link.group_id _ma_model_group_link.model_id 1 1 # # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.auth_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.label_entity_id _atom_site.auth_asym_id _atom_site.auth_comp_id _atom_site.B_iso_or_equiv _atom_site.pdbx_PDB_model_num ATOM 1 N N . GLU 41 41 ? A 0.849 -17.206 6.009 1 1 B GLU 0.740 1 ATOM 2 C CA . GLU 41 41 ? A -0.218 -17.321 4.971 1 1 B GLU 0.740 1 ATOM 3 C C . GLU 41 41 ? A -1.561 -16.752 5.422 1 1 B GLU 0.740 1 ATOM 4 O O . GLU 41 41 ? A -1.860 -15.609 5.117 1 1 B GLU 0.740 1 ATOM 5 C CB . GLU 41 41 ? A -0.218 -18.799 4.541 1 1 B GLU 0.740 1 ATOM 6 C CG . GLU 41 41 ? A -0.406 -19.850 5.664 1 1 B GLU 0.740 1 ATOM 7 C CD . GLU 41 41 ? A 0.523 -21.014 5.348 1 1 B GLU 0.740 1 ATOM 8 O OE1 . GLU 41 41 ? A 0.036 -22.133 5.090 1 1 B GLU 0.740 1 ATOM 9 O OE2 . GLU 41 41 ? A 1.740 -20.707 5.349 1 1 B GLU 0.740 1 ATOM 10 N N . SER 42 42 ? A -2.343 -17.486 6.237 1 1 B SER 0.800 1 ATOM 11 C CA . SER 42 42 ? A -3.638 -17.046 6.765 1 1 B SER 0.800 1 ATOM 12 C C . SER 42 42 ? A -3.462 -16.488 8.171 1 1 B SER 0.800 1 ATOM 13 O O . SER 42 42 ? A -3.901 -17.058 9.168 1 1 B SER 0.800 1 ATOM 14 C CB . SER 42 42 ? A -4.660 -18.202 6.798 1 1 B SER 0.800 1 ATOM 15 O OG . SER 42 42 ? A -4.749 -18.825 5.498 1 1 B SER 0.800 1 ATOM 16 N N . GLN 43 43 ? A -2.712 -15.370 8.301 1 1 B GLN 0.800 1 ATOM 17 C CA . GLN 43 43 ? A -2.371 -14.769 9.583 1 1 B GLN 0.800 1 ATOM 18 C C . GLN 43 43 ? A -3.517 -14.040 10.266 1 1 B GLN 0.800 1 ATOM 19 O O . GLN 43 43 ? A -3.610 -14.014 11.491 1 1 B GLN 0.800 1 ATOM 20 C CB . GLN 43 43 ? A -1.173 -13.800 9.436 1 1 B GLN 0.800 1 ATOM 21 C CG . GLN 43 43 ? A 0.134 -14.516 9.022 1 1 B GLN 0.800 1 ATOM 22 C CD . GLN 43 43 ? A 1.262 -13.503 8.810 1 1 B GLN 0.800 1 ATOM 23 O OE1 . GLN 43 43 ? A 1.029 -12.348 8.476 1 1 B GLN 0.800 1 ATOM 24 N NE2 . GLN 43 43 ? A 2.535 -13.953 8.967 1 1 B GLN 0.800 1 ATOM 25 N N . GLU 44 44 ? A -4.409 -13.418 9.473 1 1 B GLU 0.820 1 ATOM 26 C CA . GLU 44 44 ? A -5.512 -12.624 9.977 1 1 B GLU 0.820 1 ATOM 27 C C . GLU 44 44 ? A -6.533 -13.430 10.769 1 1 B GLU 0.820 1 ATOM 28 O O . GLU 44 44 ? A -6.862 -13.104 11.923 1 1 B GLU 0.820 1 ATOM 29 C CB . GLU 44 44 ? A -6.203 -11.962 8.771 1 1 B GLU 0.820 1 ATOM 30 C CG . GLU 44 44 ? A -7.262 -10.918 9.183 1 1 B GLU 0.820 1 ATOM 31 C CD . GLU 44 44 ? A -7.899 -10.191 7.997 1 1 B GLU 0.820 1 ATOM 32 O OE1 . GLU 44 44 ? A -7.486 -10.415 6.837 1 1 B GLU 0.820 1 ATOM 33 O OE2 . GLU 44 44 ? A -8.798 -9.358 8.292 1 1 B GLU 0.820 1 ATOM 34 N N . ASP 45 45 ? A -6.990 -14.565 10.207 1 1 B ASP 0.860 1 ATOM 35 C CA . ASP 45 45 ? A -7.911 -15.520 10.790 1 1 B ASP 0.860 1 ATOM 36 C C . ASP 45 45 ? A -7.364 -16.260 12.006 1 1 B ASP 0.860 1 ATOM 37 O O . ASP 45 45 ? A -8.108 -16.704 12.885 1 1 B ASP 0.860 1 ATOM 38 C CB . ASP 45 45 ? A -8.311 -16.611 9.758 1 1 B ASP 0.860 1 ATOM 39 C CG . ASP 45 45 ? A -8.309 -16.133 8.312 1 1 B ASP 0.860 1 ATOM 40 O OD1 . ASP 45 45 ? A -7.193 -15.852 7.814 1 1 B ASP 0.860 1 ATOM 41 O OD2 . ASP 45 45 ? A -9.408 -16.121 7.709 1 1 B ASP 0.860 1 ATOM 42 N N . MET 46 46 ? A -6.029 -16.454 12.041 1 1 B MET 0.800 1 ATOM 43 C CA . MET 46 46 ? A -5.292 -16.999 13.166 1 1 B MET 0.800 1 ATOM 44 C C . MET 46 46 ? A -5.324 -16.069 14.374 1 1 B MET 0.800 1 ATOM 45 O O . MET 46 46 ? A -5.663 -16.479 15.485 1 1 B MET 0.800 1 ATOM 46 C CB . MET 46 46 ? A -3.825 -17.252 12.736 1 1 B MET 0.800 1 ATOM 47 C CG . MET 46 46 ? A -2.922 -17.890 13.810 1 1 B MET 0.800 1 ATOM 48 S SD . MET 46 46 ? A -1.204 -18.145 13.261 1 1 B MET 0.800 1 ATOM 49 C CE . MET 46 46 ? A -0.699 -16.400 13.299 1 1 B MET 0.800 1 ATOM 50 N N . PHE 47 47 ? A -5.038 -14.760 14.169 1 1 B PHE 0.810 1 ATOM 51 C CA . PHE 47 47 ? A -5.156 -13.743 15.206 1 1 B PHE 0.810 1 ATOM 52 C C . PHE 47 47 ? A -6.602 -13.509 15.635 1 1 B PHE 0.810 1 ATOM 53 O O . PHE 47 47 ? A -6.887 -13.242 16.803 1 1 B PHE 0.810 1 ATOM 54 C CB . PHE 47 47 ? A -4.490 -12.400 14.786 1 1 B PHE 0.810 1 ATOM 55 C CG . PHE 47 47 ? A -4.412 -11.395 15.922 1 1 B PHE 0.810 1 ATOM 56 C CD1 . PHE 47 47 ? A -3.939 -11.764 17.194 1 1 B PHE 0.810 1 ATOM 57 C CD2 . PHE 47 47 ? A -4.809 -10.062 15.720 1 1 B PHE 0.810 1 ATOM 58 C CE1 . PHE 47 47 ? A -3.904 -10.839 18.245 1 1 B PHE 0.810 1 ATOM 59 C CE2 . PHE 47 47 ? A -4.768 -9.132 16.769 1 1 B PHE 0.810 1 ATOM 60 C CZ . PHE 47 47 ? A -4.328 -9.525 18.037 1 1 B PHE 0.810 1 ATOM 61 N N . ALA 48 48 ? A -7.566 -13.610 14.697 1 1 B ALA 0.910 1 ATOM 62 C CA . ALA 48 48 ? A -8.984 -13.564 14.996 1 1 B ALA 0.910 1 ATOM 63 C C . ALA 48 48 ? A -9.417 -14.633 15.990 1 1 B ALA 0.910 1 ATOM 64 O O . ALA 48 48 ? A -10.027 -14.319 16.999 1 1 B ALA 0.910 1 ATOM 65 C CB . ALA 48 48 ? A -9.784 -13.655 13.683 1 1 B ALA 0.910 1 ATOM 66 N N . LYS 49 49 ? A -8.980 -15.894 15.794 1 1 B LYS 0.840 1 ATOM 67 C CA . LYS 49 49 ? A -9.253 -16.979 16.725 1 1 B LYS 0.840 1 ATOM 68 C C . LYS 49 49 ? A -8.714 -16.799 18.130 1 1 B LYS 0.840 1 ATOM 69 O O . LYS 49 49 ? A -9.314 -17.296 19.082 1 1 B LYS 0.840 1 ATOM 70 C CB . LYS 49 49 ? A -8.756 -18.315 16.142 1 1 B LYS 0.840 1 ATOM 71 C CG . LYS 49 49 ? A -9.810 -18.887 15.191 1 1 B LYS 0.840 1 ATOM 72 C CD . LYS 49 49 ? A -9.248 -19.975 14.269 1 1 B LYS 0.840 1 ATOM 73 C CE . LYS 49 49 ? A -10.227 -20.456 13.196 1 1 B LYS 0.840 1 ATOM 74 N NZ . LYS 49 49 ? A -10.679 -19.290 12.407 1 1 B LYS 0.840 1 ATOM 75 N N . LEU 50 50 ? A -7.563 -16.118 18.293 1 1 B LEU 0.800 1 ATOM 76 C CA . LEU 50 50 ? A -7.063 -15.681 19.586 1 1 B LEU 0.800 1 ATOM 77 C C . LEU 50 50 ? A -7.946 -14.612 20.233 1 1 B LEU 0.800 1 ATOM 78 O O . LEU 50 50 ? A -8.300 -14.711 21.405 1 1 B LEU 0.800 1 ATOM 79 C CB . LEU 50 50 ? A -5.606 -15.167 19.449 1 1 B LEU 0.800 1 ATOM 80 C CG . LEU 50 50 ? A -4.978 -14.546 20.719 1 1 B LEU 0.800 1 ATOM 81 C CD1 . LEU 50 50 ? A -4.944 -15.518 21.909 1 1 B LEU 0.800 1 ATOM 82 C CD2 . LEU 50 50 ? A -3.567 -14.022 20.415 1 1 B LEU 0.800 1 ATOM 83 N N . LYS 51 51 ? A -8.364 -13.581 19.463 1 1 B LYS 0.780 1 ATOM 84 C CA . LYS 51 51 ? A -9.272 -12.533 19.924 1 1 B LYS 0.780 1 ATOM 85 C C . LYS 51 51 ? A -10.647 -13.044 20.328 1 1 B LYS 0.780 1 ATOM 86 O O . LYS 51 51 ? A -11.198 -12.611 21.343 1 1 B LYS 0.780 1 ATOM 87 C CB . LYS 51 51 ? A -9.457 -11.432 18.854 1 1 B LYS 0.780 1 ATOM 88 C CG . LYS 51 51 ? A -8.227 -10.528 18.692 1 1 B LYS 0.780 1 ATOM 89 C CD . LYS 51 51 ? A -8.391 -9.459 17.596 1 1 B LYS 0.780 1 ATOM 90 C CE . LYS 51 51 ? A -8.450 -10.070 16.193 1 1 B LYS 0.780 1 ATOM 91 N NZ . LYS 51 51 ? A -8.171 -9.064 15.143 1 1 B LYS 0.780 1 ATOM 92 N N . ASP 52 52 ? A -11.204 -14.005 19.575 1 1 B ASP 0.780 1 ATOM 93 C CA . ASP 52 52 ? A -12.451 -14.703 19.837 1 1 B ASP 0.780 1 ATOM 94 C C . ASP 52 52 ? A -12.515 -15.363 21.220 1 1 B ASP 0.780 1 ATOM 95 O O . ASP 52 52 ? A -13.575 -15.469 21.830 1 1 B ASP 0.780 1 ATOM 96 C CB . ASP 52 52 ? A -12.650 -15.837 18.797 1 1 B ASP 0.780 1 ATOM 97 C CG . ASP 52 52 ? A -12.894 -15.360 17.370 1 1 B ASP 0.780 1 ATOM 98 O OD1 . ASP 52 52 ? A -13.227 -14.166 17.166 1 1 B ASP 0.780 1 ATOM 99 O OD2 . ASP 52 52 ? A -12.744 -16.228 16.467 1 1 B ASP 0.780 1 ATOM 100 N N . LYS 53 53 ? A -11.365 -15.831 21.757 1 1 B LYS 0.720 1 ATOM 101 C CA . LYS 53 53 ? A -11.287 -16.472 23.065 1 1 B LYS 0.720 1 ATOM 102 C C . LYS 53 53 ? A -11.512 -15.514 24.228 1 1 B LYS 0.720 1 ATOM 103 O O . LYS 53 53 ? A -11.820 -15.952 25.335 1 1 B LYS 0.720 1 ATOM 104 C CB . LYS 53 53 ? A -9.914 -17.159 23.318 1 1 B LYS 0.720 1 ATOM 105 C CG . LYS 53 53 ? A -9.421 -18.134 22.234 1 1 B LYS 0.720 1 ATOM 106 C CD . LYS 53 53 ? A -10.483 -19.131 21.745 1 1 B LYS 0.720 1 ATOM 107 C CE . LYS 53 53 ? A -9.956 -20.128 20.714 1 1 B LYS 0.720 1 ATOM 108 N NZ . LYS 53 53 ? A -11.097 -20.852 20.115 1 1 B LYS 0.720 1 ATOM 109 N N . PHE 54 54 ? A -11.355 -14.195 23.987 1 1 B PHE 0.610 1 ATOM 110 C CA . PHE 54 54 ? A -11.411 -13.174 25.017 1 1 B PHE 0.610 1 ATOM 111 C C . PHE 54 54 ? A -12.241 -11.952 24.611 1 1 B PHE 0.610 1 ATOM 112 O O . PHE 54 54 ? A -12.092 -10.893 25.219 1 1 B PHE 0.610 1 ATOM 113 C CB . PHE 54 54 ? A -9.991 -12.633 25.334 1 1 B PHE 0.610 1 ATOM 114 C CG . PHE 54 54 ? A -9.027 -13.719 25.700 1 1 B PHE 0.610 1 ATOM 115 C CD1 . PHE 54 54 ? A -9.133 -14.376 26.934 1 1 B PHE 0.610 1 ATOM 116 C CD2 . PHE 54 54 ? A -7.987 -14.071 24.826 1 1 B PHE 0.610 1 ATOM 117 C CE1 . PHE 54 54 ? A -8.204 -15.359 27.298 1 1 B PHE 0.610 1 ATOM 118 C CE2 . PHE 54 54 ? A -7.056 -15.051 25.188 1 1 B PHE 0.610 1 ATOM 119 C CZ . PHE 54 54 ? A -7.161 -15.693 26.426 1 1 B PHE 0.610 1 ATOM 120 N N . PHE 55 55 ? A -13.111 -12.020 23.575 1 1 B PHE 0.790 1 ATOM 121 C CA . PHE 55 55 ? A -13.936 -10.886 23.150 1 1 B PHE 0.790 1 ATOM 122 C C . PHE 55 55 ? A -14.978 -10.467 24.200 1 1 B PHE 0.790 1 ATOM 123 O O . PHE 55 55 ? A -16.071 -11.036 24.285 1 1 B PHE 0.790 1 ATOM 124 C CB . PHE 55 55 ? A -14.628 -11.137 21.771 1 1 B PHE 0.790 1 ATOM 125 C CG . PHE 55 55 ? A -15.395 -9.922 21.270 1 1 B PHE 0.790 1 ATOM 126 C CD1 . PHE 55 55 ? A -16.798 -9.860 21.381 1 1 B PHE 0.790 1 ATOM 127 C CD2 . PHE 55 55 ? A -14.717 -8.795 20.777 1 1 B PHE 0.790 1 ATOM 128 C CE1 . PHE 55 55 ? A -17.502 -8.707 21.006 1 1 B PHE 0.790 1 ATOM 129 C CE2 . PHE 55 55 ? A -15.419 -7.641 20.398 1 1 B PHE 0.790 1 ATOM 130 C CZ . PHE 55 55 ? A -16.812 -7.600 20.505 1 1 B PHE 0.790 1 ATOM 131 N N . ASN 56 56 ? A -14.658 -9.448 25.007 1 1 B ASN 0.780 1 ATOM 132 C CA . ASN 56 56 ? A -15.450 -8.929 26.095 1 1 B ASN 0.780 1 ATOM 133 C C . ASN 56 56 ? A -15.234 -7.395 26.114 1 1 B ASN 0.780 1 ATOM 134 O O . ASN 56 56 ? A -14.407 -6.894 25.313 1 1 B ASN 0.780 1 ATOM 135 C CB . ASN 56 56 ? A -14.932 -9.465 27.460 1 1 B ASN 0.780 1 ATOM 136 C CG . ASN 56 56 ? A -15.224 -10.929 27.736 1 1 B ASN 0.780 1 ATOM 137 O OD1 . ASN 56 56 ? A -14.587 -11.559 28.602 1 1 B ASN 0.780 1 ATOM 138 N ND2 . ASN 56 56 ? A -16.202 -11.537 27.044 1 1 B ASN 0.780 1 ATOM 139 O OXT . ASN 56 56 ? A -15.887 -6.724 26.965 1 1 B ASN 0.780 1 # # loop_ _atom_type.symbol C N O S # # loop_ _ma_qa_metric.id _ma_qa_metric.name _ma_qa_metric.description _ma_qa_metric.type _ma_qa_metric.mode _ma_qa_metric.type_other_details _ma_qa_metric.software_group_id 1 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' local . 5 2 QMEANDisCo 'Predicted accuracy according to all-atom lDDT in [0,1].' 'pLDDT all-atom in [0,1]' global . 5 3 GMQE 'Global Model Quality Estimate of the model accuracy, calculated by SWISS-MODEL.' 'normalized score' global . 6 # # loop_ _ma_qa_metric_global.ordinal_id _ma_qa_metric_global.model_id _ma_qa_metric_global.metric_id _ma_qa_metric_global.metric_value 1 1 2 0.790 2 1 3 0 # # loop_ _ma_qa_metric_local.ordinal_id _ma_qa_metric_local.model_id _ma_qa_metric_local.label_asym_id _ma_qa_metric_local.label_seq_id _ma_qa_metric_local.label_comp_id _ma_qa_metric_local.metric_id _ma_qa_metric_local.metric_value 1 1 A 41 GLU 1 0.740 2 1 A 42 SER 1 0.800 3 1 A 43 GLN 1 0.800 4 1 A 44 GLU 1 0.820 5 1 A 45 ASP 1 0.860 6 1 A 46 MET 1 0.800 7 1 A 47 PHE 1 0.810 8 1 A 48 ALA 1 0.910 9 1 A 49 LYS 1 0.840 10 1 A 50 LEU 1 0.800 11 1 A 51 LYS 1 0.780 12 1 A 52 ASP 1 0.780 13 1 A 53 LYS 1 0.720 14 1 A 54 PHE 1 0.610 15 1 A 55 PHE 1 0.790 16 1 A 56 ASN 1 0.780 # # loop_ _pdbx_data_usage.id _pdbx_data_usage.type _pdbx_data_usage.details _pdbx_data_usage.url 1 license ;This SWISS-MODEL protein model is copyright. 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