A0A0E3K6E9 (A0A0E3K6E9_SACSO) Saccharolobus solfataricus (Sulfolobus solfataricus)

DNA polymerase IV UniProtKBAFDB90v4InterProInteractive Modelling

352 aa; Sequence (Fasta) ; 2 identical sequences: Saccharolobus solfataricus: D0KN12, Q97W02

Available Structures

134 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA
3fds
 Heteromer
P57766; Q97W02; Q97Z84; 		1-352
26×EDO; 2×PEG; 1×1PE; 3×GOL; 1×PGE;
Assess
Complex of DNA polymerase IV and L-DNA duplex
6l97
homo-2-mer1-341
Assess
Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA Po…
2imw
monomer1-348
2×CA; 1×DDS; 6×EDO;
Assess
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…
2v9w
monomer1-344
2×CA; 1×DCT;
Assess
CRYSTAL STRUCTURE of DPO4 LINKER REGION P236A MUTANT WITH AN INCOMING D-dCDP
4qwb
monomer1-343
1×YYY; 4×CA; 4×ACT; 3×GOL;
Assess
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…
2uvv
monomer1-343
1×DGT; 3×CA;
Assess
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…
2uvu
monomer1-343
1×DGT; 3×CA;
Assess
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…
2va2
monomer1-343
3×CA; 1×DCT;
Assess
Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine i…
2va3
monomer1-343
1×DGT; 3×CA;
Assess
Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dTTP
4tqr
monomer1-342
3×MG; 1×DOC; 2×CA; 1×TTP;
Assess
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…
2jej
monomer1-342
4×CA; 1×DGT;
Assess
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…
2bq3
monomer1-342
3×CA;
Assess
Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dCTP
4tqs
monomer1-342
1×DCP; 2×MG; 1×DOC;
Assess
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…
2uvw
monomer1-342
1×DGT; 3×CA;
Assess
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…
2br0
monomer1-342
1×DG; 3×CA;
Assess
The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguani…
2jef
monomer1-342
1×DGT; 3×CA;
Assess
BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA,…
2xc9
monomer1-342
Assess
Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion
1n48
monomer1-342
3×CA; 1×ATP;
Assess
Bypass of a bulky adduct dG1,8 by DPO4
4rzr
monomer1-342
2×CA; 1×NA; 1×TRS;
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…
2c28
monomer1-342
1×DG; 3×CA;
Assess
Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA
2w9b
monomer1-342
2×MG;
Assess
Replication of N2,3-Ethenoguanine by DNA Polymerases
3v6j
monomer1-342
1×DCP; 2×MG;
Assess
Replication of N2,3-Ethenoguanine by DNA Polymerases
3v6h
monomer1-342
1×DCP; 2×MG; 1×CA;
Assess
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…
2jeg
monomer1-342
1×DGT; 4×CA;
Assess
The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguani…
2jei
monomer1-342
4×CA; 1×DGT;
Assess
Ternary Crystal Structures of a Y-family DNA polymerase DPO4 from Sulfobus Solfataricus in Comples …
4qwc
monomer1-342
2×CA; 2×ACT; 1×LTP;
Assess
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…
2bqu
monomer1-342
1×DAD; 3×CA;
Assess
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…
2j6u
monomer1-342
3×CA; 1×DGT;
Assess
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…
2j6s
monomer1-342
1×DTP; 3×CA;
Assess
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODI…
2xca
monomer1-342
1×DGT; 4×MG;
Assess
Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pa…
2v4r
monomer1-342
1×DGT; 3×CA;
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…
2c2r
monomer1-342
1×DCT; 4×CA;
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…
2c22
monomer1-342
1×DGT; 3×CA;
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…
2c2d
monomer1-342
2×DTP; 5×CA;
Assess
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODI…
2xcp
monomer1-342
3×MG; 1×DCP;
Assess
Post-insertion complex of the Y-family DNA polymerase Dpo4 with M1dG containing template DNA
2v4q
monomer1-342
1×DGT; 3×CA;
Assess
Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTP
2w9a
monomer1-342
1×DGT; 4×MG;
Assess
Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and…
2j6t
monomer1-342
1×DTP; 3×CA;
Assess
Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulf…
2c2e
monomer1-342
1×DCP; 3×CA;
Assess
Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dT
4gc6
monomer1-342
1×0OH; 4×CA;
Assess
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constr…
2uvr
monomer1-342
1×DGT; 3×CA;
Assess
Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTP
2w9c
monomer1-342
3×MG; 1×TTP;
Assess
Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientation
2w8l
monomer1-342
1×DGT; 3×MG;
Assess
Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientation
2w8k
monomer1-342
1×DGT; 3×MG;
Assess
Replication of N2,3-Ethenoguanine by DNA Polymerases
3v6k
monomer1-342
2×MG; 3×CA; 3×NA;
Assess
Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Inco…
1jx4
monomer1-341
1×CA; 1×MG; 1×ADI;
Assess
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms
2rdi
monomer1-341
1×PEG; 1×GOL;
Assess
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion
3m9n
monomer1-341
3×CA; 1×CTP; 1×CPT;
Assess
T-3 ternary complex of Dpo4
3qz7
monomer1-341
1×DCP; 3×CA;
Assess
TT-4 ternary complex of Dpo4
3qz8
monomer1-341
3×CA; 1×DCP;
Assess
DPO with AT matched
1s9f
monomer1-341
1×CA; 1×MG; 1×DDY;
Assess
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion
3m9o
monomer1-341
4×CA; 1×ATP; 1×CPT;
Assess
Dpo4 post-insertion complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
4fbt
monomer1-341
1×DGT; 3×CA; 1×GTP;
Assess
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
1rys
monomer1-341
3×CA; 1×ATP;
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…
4qwd
monomer1-341
1×3TT; 4×CA;
Assess
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis
2agq
monomer1-341
2×CA; 1×MG; 1×DTP;
Assess
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…
1s0o
monomer1-341
3×CA; 1×MG; 1×TTP;
Assess
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…
1s10
monomer1-341
2×CA; 1×DCP;
Assess
Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Inco…
1jxl
monomer1-341
1×EDO; 1×CA; 3×MG; 1×DG3;
Assess
TERNARY CRYSTAL STRUCTURES OF A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS in COMPLE…
4qwa
monomer1-341
1×0G8; 3×CA;
Assess
Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms
2rdj
monomer1-341
2×CA; 1×TMP; 1×GOL;
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…
4qwe
monomer1-341
1×FTD; 3×CA;
Assess
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap
2ibk
monomer1-341
1×BAP; 3×EDO; 1×GOL; 2×CA; 1×POP;
Assess
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
1ryr
monomer1-341
2×CA; 1×ATP;
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…
4qw8
monomer1-341
1×DCP; 3×CA;
Assess
Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming …
4jv1
monomer1-341
1×DGT; 4×CA;
Assess
Ternary structure of Dpo4 bound to G in the template base paired with incoming dCTP
7klf
monomer1-341
3×CA; 1×DCP;
Assess
Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 13-mer) with Dpo4 and incoming dDGT
3t5h
monomer1-341
1×DGT; 3×CA;
Assess
DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures o…
2bqr
monomer1-341
1×DTP; 3×CA;
Assess
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…
2r8i
monomer1-341
3×CA; 1×DTP;
Assess
Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 13-mer) with Dpo4 and incoming dDTP
3t5j
monomer1-341
1×DTP; 3×CA;
Assess
DPO4 with GT mismatch
1s97
monomer1-341
1×CA; 1×DCT;
Assess
Dpo4 Y12A mutant incorporating ADP opposite template dT
3pr5
monomer1-341
2×CA; 1×ATP;
Assess
Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion
1n56
monomer1-341
2×MG; 1×ATP;
Assess
TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLE…
4qw9
monomer1-341
1×0G4; 3×CA;
Assess
Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dT
6vnp
monomer1-341
1×DZ4; 2×MG;
Assess
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…
2r8h
monomer1-341
3×CA; 1×DGT;
Assess
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap
2ia6
monomer1-341
2×PO4; 2×CA; 1×ATP; 3×EDO; 1×BAP;
Assess
Crystal structure of Dpo4 in complex with DNA duplex
4g3i
monomer1-341
1×CA;
Assess
Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dG
6vkp
monomer1-341
2×MG; 1×DZ4;
Assess
Dpo4 polymerase pre-insertion binary complex with the N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
4fbu
monomer1-341
2×CA;
Assess
Complex of DNA polymerase IV and D-DNA duplex
6l84
monomer1-341
3×CA;
Assess
Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTP
5edw
monomer1-341
3×CA; 1×TTP;
Assess
Ternary complex of gamma-OHPDG adduct modified dna (zero primer) with dna polymerase iv and incomin…
4juz
monomer1-341
1×DGT; 2×CA;
Assess
Dpo4 Y12A mutant incorporating dADP opposite template dT
3pr4
monomer1-341
1×ATP; 3×CA;
Assess
Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by t…
2r8g
monomer1-341
3×CA; 1×DGT;
Assess
Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase
1s0m
monomer1-341
1×BAP; 1×MG; 3×CA; 1×DTP;
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV and incoming…
3pw2
monomer1-341
1×TTP; 3×CA;
Assess
Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming …
4jv2
monomer1-341
1×DTP; 2×CA;
Assess
Snapshots of replication through an abasic lesion: structural basis for base substitution and frame…
1s0n
monomer1-341
3×CA; 1×DCP;
Assess
Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dTTP*
6vgm
monomer1-341
1×1FZ; 2×MG;
Assess
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis
2ago
monomer1-341
4×MG; 1×CA; 1×POP;
Assess
Crystal structure of Dpo4 in complex with S-MC-dADP opposite dT
4gc7
monomer1-341
1×0OJ; 5×CA;
Assess
Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis
2agp
monomer1-341
1×CA; 2×MG; 1×DGT;
Assess
Crystal structure of Y-family DNA polymerase Dpo4 extending from a MeFapy-dG:dC pair
4ruc
monomer1-341
1×DTP; 3×CA;
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…
3pw4
monomer1-341
1×DTP; 3×CA; 1×AFN;
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…
3pw7
monomer1-341
1×DCP; 1×CA; 1×AFN;
Assess
Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 14-mer) with Dpo4 and incoming dDTP
3t5k
monomer1-341
1×DTP; 3×CA;
Assess
Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion
3m9m
monomer1-341
1×CTP; 4×CA; 3×GOL; 1×CPT;
Assess
Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 14-mer) with Dpo4 and incoming dDGT
3t5l
monomer1-341
1×DGT; 3×CA;
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV and incoming…
3pw0
monomer1-341
1×DTP; 3×CA;
Assess
Ring-Opening of the -OH-PdG Adduct in Ternary Complexes with the Sulfolobus solfataricus DNA polyme…
4jv0
monomer1-341
1×DTP; 2×CA;
Assess
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incomi…
3pw5
monomer1-341
1×TTP; 3×CA; 1×AFN;
Assess
Ternary structure of Dpo4 bound to N7mG in the template base paired with incoming dCTP
7kle
monomer1-341
3×CA; 1×DCP;
Assess
Binary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV
3pvx
monomer1-341
3×CA;
Assess
Crystal structure of Y-family DNA polymerase Dpo4 bypassing a MeFapy-dG adduct
4rua
monomer1-341
1×DTP; 3×CA;
Assess
Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dGTP*
6vg6
monomer1-341
1×XG4; 2×MG; 1×GOL;
Assess
Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) le…
3rax
monomer2-341
1×DGT; 3×CA;
Assess
oxoG-modified Insertion Ternary Complex
2asd
monomer2-341
4×CA; 1×DCP;
Assess
Dpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G l…
3khr
monomer2-341
1×TTP; 3×CA; 1×AF;
Assess
Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G l…
3khl
monomer2-341
1×TTP; 3×CA; 1×AF;
Assess
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) le…
3raq
monomer2-341
1×DGT; 3×CA; 1×EPE;
Assess
oxoG-modified Preinsertion Binary Complex
2asj
monomer2-341
2×CA;
Assess
Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs
3gij
monomer2-341
1×DGT; 3×CA;
Assess
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) l…
3rbd
monomer2-341
1×DGT; 3×CA; 1×EPE;
Assess
Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation
3gii
monomer2-341
1×DGT; 3×CA; 1×NA;
Assess
oxoG-modified Postinsertion Binary Complex
2asl
monomer2-341
2×CA;
Assess
Unmodified preinsertion binary complex
2au0
monomer2-341
1×CA;
Assess
Dpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesion
3khh
monomer2-341
1×DGT; 3×CA; 1×AF;
Assess
Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) l…
3rb6
monomer2-341
1×DGT; 1×EPE; 3×CA;
Assess
Dpo4 extension ternary complex with oxoG(anti)-G(syn) pair
3gim
monomer2-341
1×DGT; 3×CA;
Assess
Dpo4 extension ternary complex with oxoG(anti)-T(anti) pair
3gil
monomer2-341
1×DGT; 3×CA;
Assess
Unmodified Insertion Ternary Complex
2atl
monomer2-341
4×CA; 1×DCP;
Assess
Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) l…
3rbe
monomer2-341
1×DGT; 3×CA;
Assess
Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) le…
3rb3
monomer2-341
1×DGT; 3×CA; 1×EPE;
Assess
Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) l…
3rb4
monomer2-341
1×DGT; 3×CA;
Assess
Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pair
3gik
monomer2-341
1×DGT; 3×CA;
Assess
Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion
3khg
monomer2-341
1×DGT; 3×CA; 1×EPE; 1×AF;
Assess
Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) le…
3rb0
monomer2-341
1×DGT; 3×CA;
Assess
Y-family DNA polymerase chimera Dpo4-Dpo4-Dbh
4f4z
monomer1-247
2×CA;
Assess
Y-family DNA polymerase chimera Dbh-Dpo4-Dbh
4f4y
monomer1-247
1×DCP; 2×CA;
Assess
Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #1
4f4w
monomer231-341
1×DCP; 2×CA;
Assess
Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #2
4f4x
monomer231-341
4×CA; 1×DCP;
Assess
Y-family DNA polymerase chimera Dbh-Dbh-Dpo4
4f50
monomer248-341
1×CA;
Assess

2 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
1jx4.1.Cmonomer0.871-341
1×CA;100.00
Assess
3fds.1.Amonomer0.841-352
100.00
Assess