A0A0L8RQ01 (A0A0L8RQ01_SACEU) Saccharomyces eubayanus (Yeast)

DNA-directed RNA polymerase subunit UniProtKBInterProInteractive Modelling

171 aa; Sequence (Fasta) ; 12 identical sequences

Available Structures

106 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Crystal structure of yeast subcomplex of Rpb4 and Rpb7
1y14
 Heteromer
P20433; P34087; 		1-171
Assess
elongating RNA Polymerase II-Bye1 TLD complex
4by7
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422; 		1-171
8×ZN; 1×MG; 2×EPE;
Assess
Complete RNA polymerase II elongation complex I with a T-U mismatch
3hou
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN;
Assess
RNA polymerase II elongation complex in the presence of 3d-Napht-A
5ot2
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG; 1×AHW;
Assess
Arrested RNA polymerase II-Bye1 complex
4bxx
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Arrested RNA Polymerase II elongation complex
3po2
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG; 1×ACT; 1×EPE; 1×PEG;
Assess
Arrested RNA Polymerase II reactivation intermediate
3po3
 Heteromer
P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
9×ZN; 1×MG; 2×ACT; 1×EPE; 1×PGE;
Assess
RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid
4a3d
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Alpha-amanitin inhibited complete RNA polymerase II elongation complex
2vum
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P85421; 		1-171
8×ZN; 1×MG;
Assess
Complete RNA polymerase II elongation complex VI
3hoy
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP
4a3e
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG; 1×APC;
Assess
RNA Polymerase II elongation complex containing a CPD Lesion
4a93
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Structure of RNA polymerase II-TFIIB complex
4bbr
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422; 		1-171
9×ZN; 2×MG;
Assess
Complete RNA polymerase II elongation complex II
3hov
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid
4a3g
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid
4a3b
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid
4a3c
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid
4a3k
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP
4a3f
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×APC; 8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP
4a3l
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG; 1×APC;
Assess
Structure of RNA Polymerase II-Tfg1 peptide complex
5ip7
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895; 		1-171
8×ZN; 1×MG;
Assess
Structure of an initially transcribing RNA polymerase II-TFIIB complex
4bbs
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422; 		1-171
9×ZN; 2×MG;
Assess
Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine
3how
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP
4by1
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422; 		1-171
8×ZN; 1×MG; 1×APC;
Assess
Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine
3hoz
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Complete RNA polymerase II elongation complex V
3hox
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP
4a3j
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG; 1×G2P;
Assess
Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…
5c3e
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
9×ZN; 2×MG;
Assess
8-oxoguanine containing RNA polymerase II elongation complex D
3i4m
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×MG; 8×ZN;
Assess
CPD lesion containing RNA Polymerase II elongation complex A
2ja5
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×MG; 8×ZN;
Assess
CPD lesion containing RNA Polymerase II elongation complex C
2ja7
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×MG; 8×ZN;
Assess
Complete RNA Polymerase II-RNA inhibitor complex
2b63
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
CPD lesion containing RNA Polymerase II elongation complex D
2ja8
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×MG; 8×ZN;
Assess
Cisplatin lesion containing RNA polymerase II elongation complex
2r7z
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×CPT; 8×ZN; 1×MG;
Assess
12 Subunit RNA Polymerase II at Room Temperature collected using SFX
5u5q
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Refined RNA Polymerase II-TFIIS complex
1y1v
 Heteromer
P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
9×ZN; 1×MG;
Assess
Elongation complex of RNA polymerase II with artificial RdRP scaffold
2r92
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II binary complex with DNA
4a3i
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom
1wcm
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
12-Subunit RNA Polymerase II Refined with Zn-SAD data
3fki
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Structure of RNA Polymerase II-TFIIF complex
5ip9
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895; 		1-171
8×ZN; 1×MG;
Assess
RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP
4a3m
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×APC; 8×ZN; 1×MG;
Assess
8-oxoguanine containing RNA polymerase II elongation complex E
3i4n
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×MG; 8×ZN;
Assess
Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…
5c44
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
Assess
Complete RNA Polymerase II elongation complex
1y1w
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
CPD lesion containing RNA Polymerase II elongation complex B
2ja6
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
1×MG; 8×ZN;
Assess
RNA Polymerase II-TFIIS-DNA/RNA complex
1y1y
 Heteromer
P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
Assess
Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…
5c4x
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
9×ZN; 2×MG;
Assess
Yeast RNAP II containing poly(A)-signal sequence in the active site
3h3v
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop
2r93
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
12-subunit RNA Polymerase II
2b8k
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN;
Assess
Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…
5c4a
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 2×MG;
Assess
Crystal structure of RNA Polymerase II in complex with TFIIB
3k1f
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422; 		1-171
9×ZN;
Assess
RNA polymerase II variant containing A Chimeric RPB9-C11 subunit
3qt1
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
7×ZN; 1×MG;
Assess
Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP
1y77
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG; 1×G2P;
Assess
RNA Polymerase II-Bye1 complex
4bxz
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Structure of transcribing RNA polymerase II-nucleosome complex
6i84
 Heteromer
P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P62799; P84233; 		1-171
8×ZN; 1×MG;
Assess
Mediator-RNA Polymerase II Pre-Initiation Complex
5sva
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P33308; P34087; P34162; P35189; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q08278; Q12343; Q3E7C1; Q99278; 		1-171
8×ZN; 1×MG;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (comple…
7zsa
 Heteromer
P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
17×ZN; 1×MG; 1×SF4;
Assess
Yeast RNA polymerase II transcription pre-initiation complex (consensus)
7o4j
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Core Mediator-PICearly (Copy A)
7ui9
 Heteromer
P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34087; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q06213; Q08278; Q12321; Q12343; Q99278; 		1-171
Assess
Complex structure of trailing EC of EC+EC (trailing EC-focused)
7mk9
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895; P41896; 		1-171
8×ZN; 2×MG;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA
7o75
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
RNA polymerase II pre-initiation complex (PIC1)
7ml0
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
17×ZN; 1×MG; 1×SF4;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, comple…
7zsb
 Heteromer
P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
17×ZN; 1×MG; 1×SF4;
Assess
Mediator-PIC Early (Core B)
7uif
 Heteromer
P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34087; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q06213; Q08278; Q12321; Q12343; Q99278; 		1-171
Assess
Composite structure of EC+EC
7mei
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895; P41896; 		1-171
16×ZN; 4×MG;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator
8cen
 Heteromer
A0A6A5PRZ0; G4XSG8; P04050; P06839; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P36100; P36145; P38902; P40422; P41896; Q00578; 		1-171
1×SF4; 17×ZN; 1×MG;
Assess
RNA pol II elongation complex
5vvs
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 1×MG;
Assess
Ternary complex of RNA Pol II, transcription scaffold and Rad26
5vvr
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40352; P40422; 		1-171
8×ZN; 1×MG;
Assess
RNA polymerase II initially transcribing complex (ITC)
7ml4
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
15×ZN; 1×MG; 1×SF4;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA
7o73
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)
7zs9
 Heteromer
P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
17×ZN; 1×MG; 1×SF4;
Assess
Structure of EC+EC (leading EC-focused)
7mka
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
8×ZN; 2×MG;
Assess
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH
5oqj
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
16×ZN; 1×MG; 1×SF4;
Assess
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR
5oqm
 Heteromer
P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278; 		1-171
16×ZN; 1×MG; 1×SF4;
Assess
RNA polymerase II pre-initiation complex (PIC3)
7ml2
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
17×ZN; 1×MG; 1×SF4;
Assess
RNA Polymerase II-Spt4/5-nucleosome-FACT structure
7nky
 Heteromer
P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32558; P32914; P34087; P38902; P40422; P62799; P84233; Q04636; 		1-171
9×ZN; 1×MG;
Assess
Structure of a yeast closed complex with distorted DNA (core CCdist)
6gyl
 Heteromer
P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896; 		1-171
10×ZN; 1×MG;
Assess
Structure of a yeast closed complex with distorted DNA (CCdist)
6gym
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
1×SF4; 16×ZN; 1×MG;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA
7o72
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Orientation of RNA polymerase II within the human VP16-Mediator-pol II-TFIIF assembly
3j0k
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; 		1-171
1×MG; 9×ZN;
Assess
Yeast TFIIH in the contracted state within the pre-initiation complex
7o4k
 Heteromer
P04050; P06839; P08518; P20433; P20435; P32776; P34087; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
1×SF4; 10×ZN; 1×BEF; 1×MG; 1×ADP;
Assess
Structure of a yeast closed complex (core CC1)
6gyk
 Heteromer
P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P38902; P40422; P41895; P41896; 		1-171
9×ZN; 1×MG;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleoso…
8ceo
 Heteromer
A0A6A5PPQ0; A0A6A5PRZ0; A0A6A5Q1T4; A0A6A5Q217; A0A6A5Q2S0; A0A6A5Q2T8; A0A6A5Q2X3; A0A6A5Q3S8; A0A6A5Q418; A0A6A5Q608; A0A6A5Q7U4; A0A6L0ZMK2; A0A6V8RKA4; A0A7I9BTI9; A0A8H4BU46; A0A8H4BW51; A0A8H4C0I9; A0A8H4C0R2; A0A8H4C1B0; A0A8H4C1U9; A0A8H4F9X3; A0A8H8ULN4; A0A8H8UMZ6; G4XSG8; P04050; P06839; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32570; P34087; P34162; P36100; P36145; P38902; P40422; P41896; P62799; P84233; Q00578; Q6AZJ8; 		1-171
1×SF4; 17×ZN; 1×MG;
Assess
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
3j1n
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-171
Assess
RNA polymerase II pre-initiation complex (PIC2)
7ml1
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
19×ZN; 1×SF4; 1×MG;
Assess
RNA polymerase II-Spt4/5-nucleosome-Chd1 structure
7nkx
 Heteromer
P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32657; P32914; P34087; P38902; P40422; P62799; P84233; 		1-171
8×ZN; 1×MG; 1×ADP; 1×BEF;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble
7o4i
 Heteromer
P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Yeast TFIIH in the expanded state within the pre-initiation complex
7o4l
 Heteromer
P04050; P06839; P08518; P20433; P20435; P32776; P34087; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1; 		1-171
1×SF4; 11×ZN; 1×BEF; 1×MG; 1×ADP;
Assess
Cryo-EM structure of backtracked Pol II in complex with Rad26
8tvs
 Heteromer
A0A6A5PTI6; A0A6A5PY05; A0A6A5Q0Z3; A0A6A5Q1P2; A0A6A5Q270; A0A6A5Q456; A0A6A5Q4H2; A0A6A5Q7A1; A0A6A5Q7Q6; A0A6A5Q8C2; A0A7I9EWC2; P20435; 		1-171
8×ZN; 1×MG;
Assess
Cryo-EM structure of CPD-stalled Pol II (Conformation 2)
8tvx
 Heteromer
A0A6A5PTI6; A0A6A5PY05; A0A6A5Q0Z3; A0A6A5Q270; A0A6A5Q456; A0A6A5Q4H2; A0A6A5Q7A1; A0A6A5Q7Q6; A0A6A5Q8C2; A0A7I9EWC2; P04050; P20435; 		1-171
8×ZN; 1×MG;
Assess
Cryo-EM structure of backtracked Pol II
8tvv
 Heteromer
A0A6A5PTI6; A0A6A5PY05; A0A6A5Q0Z3; A0A6A5Q270; A0A6A5Q456; A0A6A5Q4H2; A0A6A5Q7A1; A0A6A5Q7Q6; A0A6A5Q8C2; A0A7I9EWC2; P04050; P20435; 		1-171
8×ZN; 1×MG;
Assess
Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1…
8tvy
 Heteromer
A0A6A5PTI6; A0A6A5PV14; A0A6A5PY05; A0A6A5Q0Z3; A0A6A5Q270; A0A6A5Q456; A0A6A5Q4H2; A0A6A5Q7A1; A0A6A5Q7Q6; A0A6A5Q8C2; A0A7I9EWC2; A0A8H4BZR7; P04050; P20435; 		1-171
8×ZN; 1×MG;
Assess
Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state)
8tvp
 Heteromer
A0A6A5PTI6; A0A6A5PY05; A0A6A5Q0Z3; A0A6A5Q270; A0A6A5Q456; A0A6A5Q4H2; A0A6A5Q7A1; A0A6A5Q7Q6; A0A6A5Q8C2; A0A7I9EWC2; P04050; P20435; 		1-171
8×ZN; 1×MG;
Assess
Cryo-EM structure of CPD-stalled Pol II (conformation 1)
8tvw
 Heteromer
A0A6A5PTI6; A0A6A5PY05; A0A6A5Q0Z3; A0A6A5Q270; A0A6A5Q456; A0A6A5Q4H2; A0A6A5Q7A1; A0A6A5Q7Q6; A0A6A5Q8C2; A0A7I9EWC2; P04050; P20435; 		1-171
8×ZN; 1×MG;
Assess
Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state)
8tug
 Heteromer
A0A6A5PTI6; A0A6A5PY05; A0A6A5Q0Z3; A0A6A5Q270; A0A6A5Q456; A0A6A5Q4H2; A0A6A5Q7A1; A0A6A5Q7Q6; A0A6A5Q8C2; A0A7I9EWC2; P04050; P20435; 		1-171
8×ZN; 1×MG;
Assess
Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 1 (Pol II Rat1-P…
8jch
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P34087; P38902; P40422; P53063; Q02792; 		1-171
8×ZN; 3×MG;
Assess
Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 2 (Pol II Rat1-P…
8k5p
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P34087; P38902; P40422; P53063; Q02792; 		1-171
8×ZN; 3×MG;
Assess
Transcription initiation complex structures elucidate DNA opening (OC)
5fyw
 Heteromer
P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896; 		1-171
10×ZN; 1×MG;
Assess
the P-lobe of RNA polymerase II pre-initiation complex
5fmf
 Heteromer
P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q3E7C1; 		1-171
2×MG; 9×ZN;
Assess
Architecture of the RNA polymerase II-Mediator core transcription initiation complex
4v1n
 Heteromer
A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422; P41896; 		1-171
9×ZN; 1×MG;
Assess
Transcription initiation complex structures elucidate DNA opening (CC)
5fz5
 Heteromer
P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896; 		1-171
10×ZN; 1×MG;
Assess
Architecture of the RNA polymerase II-Mediator core transcription initiation complex
4v1o
 Heteromer
A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P34087; P34162; P38304; P38782; P38902; P40422; P41896; Q99278; 		1-171
9×ZN; 1×MG;
Assess
RNA polymerase II-TFIIS complex
1pqv
 Heteromer
P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-169
1×MG; 9×ZN;
Assess
Complete 12-subunit RNA polymerase II
1nt9
 Heteromer
P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; 		1-169
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
4bbs.1.Gmonomer0.841-171
100.00
Assess