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A0A287DC17 (A0A287DC17_ICTTR) Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilustridecemlineatus)

Ubiquitin-ribosomal protein eL40 fusion protein UniProtKBInterProInteractive Modelling

128 aa; Sequence (Fasta) ; 143 identical sequences

Available Structures

75 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: Rsp5 and UbV R5.4 Heteromer
P39940; P62987;
1-77
Assess
Lys27-linked di-ubiquitin Heteromer
P0CG47; P62987;
1-76
MG;
Assess
Lys63-linked di-ubiquitin Heteromer
P0CG47; P62987;
1-76
Assess
Lys27-linked diubiquitin Heteromer
P62987;
1-76
MG;
Assess
Structure of an active ligase (HOIP)/ubiquitin transfer complex Heteromer
P63048; Q96EP0;
1-76
ZN;IMD;
Assess
Lys48-linked di-ubiquitin Heteromer
P0CG47; P62987;
1-76
Assess
Lys27-linked triubiquitin Heteromer
P62987;
1-76
Assess
Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin Heteromer
P62987; Q13137;
1-76
GOL;ACT;ZN;
Assess
Lys27-linked triubiquitin Heteromer
P62987;
1-76
NO3;
Assess
Structure of an active ligase (HOIP-H889A)/ubiquitin transfer complex Heteromer
P63048; Q96EP0;
1-76
ZN;
Assess
X-ray structure of HKU1-PLP2(Cys109Ser) catalytic mutant in complex with free ubiquitin Heteromer
P62987; U3N841;
1-76
ZN;EDO;
Assess
Nedd4 HECT:Ub complex Heteromer
P46934; P63048;
1-76
Assess
NMR structure of EKLF(22-40)/Ubiquitin Complex Heteromer
P62987; Q13351;
1-76
Assess
cryo-EM structure of H2BK34ub nucleosome Heteromer
P04908; P62805; P62987; Q2M2T1; Q71DI3;
1-76
Assess
USP1 bound to ubiquitin conjugated to FANCD2 (focused refinement) Heteromer
O94782; P62987;
1-76
ZN;
Assess
Solution Structure of the Human FAAP20 UBZ-Ubiquitin Complex Heteromer
P62987; Q6NZ36;
1-76
ZN;
Assess
Solution structure of the Rpn1 T1 site engaging two monoubiquitin molecules Heteromer
P38764; P62987;
1-76
Assess
USP1 bound to ML323 and ubiquitin conjugated to FANCD2 (focused refinement) Heteromer
O94782; P62987;
1-76
ZN;JDA;
Assess
Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the contracted binding mode Heteromer
P38764; P62987;
1-76
Assess
Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the extended binding mode Heteromer
P38764; P62987;
1-76
Assess
Structure of ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA Heteromer
P62987; Q9BXW9; Q9NVI1;
1-76
Assess
Cryo-EM structure of USP1-UAF1 bound to mono-ubiquitinated FANCD2, and FANCI Heteromer
O94782; P62987; Q8TAF3; Q9BXW9; Q9NVI1;
1-76
ZN;
Assess
Structure of the 26S proteasome-Ubp6 complex Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P43593; P53549; P62987; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;
1-76
Assess
K11/K63-branched tri-Ubiquitin Heteromer
P0CG47; P62987;
1-75
Assess
Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in compl… Heteromer
M4STU1; P62987;
1-75
ZN;PGO;3CN;
Assess
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: NEDD4L and UbV N… Heteromer
P62987; Q96PU5;
1-75
Assess
Crystal structure of a 53BP1 Tudor domain in complex with a ubiquitin variant Heteromer
P62987; Q12888;
1-75
Assess
Crystal structure of covalent ubiquitin-USP21 complex Heteromer
P62987; Q9UK80;
1-75
ZN;NEH;
Assess
Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in compl… Heteromer
M4STU1; P62987;
1-75
ZN;SO4;3CN;
Assess
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: WWP1, Ubv P2.3 a… Heteromer
P62987; P68036; Q9H0M0;
1-75
Assess
Structure of the SARS-COV2 PLpro (C111S) in complex with a dimeric Ubv that inhibits activity by an… Heteromer
P0DTC1; P62987;
1-75
ZN;BR;
Assess
Bro1 V domain and ubiquitin Heteromer
G0VBG6; P62987;
1-75
Assess
Lys6-linked di-ubiquitin Heteromer
P0CG47; P62987;
1-74
Assess
Linear tri-ubiquitin Heteromer
P0CG47; P62987;
1-74
Assess
Structure of CYLD CAP-Gly3 (467-565) bound to Ub; orthorhobic space group Heteromer
P62987; Q9NQC7;
1-74
Assess
Structure of the Smurf2 HECT Domain with a High Affinity Ubiquitin Variant (UbV) Heteromer
P62987; Q9HAU4;
1-74
SO4;NA;CL;DTT;EDO;
Assess
Lys11-linked diubiquitin Heteromer
P0CG47; P62987;
1-73
NA;
Assess
Lys33-linked di-ubiquitin Heteromer
P0CG47; P62987;
1-73
Assess
Lys29-linked di-ubiquitin Heteromer
P0CG47; P62987;
1-73
Assess
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: WWP1 and UbV P1.1 Heteromer
P62987; Q9H0M0;
1-73
Assess
Linear tetra-ubiquitin Heteromer
P0CG47; P62987;
1-73
Assess
Crystal structure of TRABID NZF1 in complex with K29 linked di-Ubiquitin Heteromer
A6QP16; P62987;
1-73
ZN;
Assess
Caught-in-action signaling complex of RIG-I 2CARD domain and MAVS CARD domain Heteromer
O95786; P62987; Q7Z434;
1-73
Assess
Complex of UBE2O with NAP1L1 and ubiquitylated uL2 Heteromer
P55209; P62987; Q9C0C9;
1-73
Assess
Crystal structure of the Legionella effector protein MavL with ADPR-Ub Heteromer
P62987;
1-72
AR6;
Assess
Yeast Npl4 in complex with Lys48-linked diubiquitin Heteromer
P33755; P62984;
1-72
GLC;ZN;BCN;
Assess
Cryo-EM structure of the human Ebp1 - 80S ribosome Heteromer
P18077; P18124; P18621; P26373; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62888; P62891; P62899; P62910; P62913; P62917; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q96L21; Q9UQ80; Q9Y3U8;
77-128
41×MG;ZN;
Assess
Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the … Heteromer
A0A087WNH4; A0A2K5PSA0; A0A8C0RJF2; A0A8C0RUW0; A0A8C0S144; A0A8C0TSD6; B7NZQ2; G1SE28; G1SE76; G1SF08; G1SGR6; G1SHG0; G1SHQ2; G1SIT5; G1SKF7; G1SNY0; G1SQH0; G1STW0; G1SVW5; G1SWI6; G1SY53; G1SYJ6; G1SZ12; G1T0C1; G1T6D1; G1TDL2; G1TJR3; G1TL06; G1TSG1; G1TT27; G1TTN1; G1TTQ5; G1TUB1; G1TUB8; G1TVT6; G1TXF6; G1U001; G1U344; G1U437; G1U7L1; G1U945; P38377; P60467; U3KPD5;
77-128
220×MG;ZN;
Assess
Ternary complex of ribosome nascent chain with SRP and NAC Heteromer
A0A087WNH4; A0A2U3YV30; A0A5F9D391; B5FYZ2; B7NZQ2; G1SE28; G1SE76; G1SF08; G1SHG0; G1SHQ2; G1SIT5; G1SKF7; G1SNY0; G1SQH0; G1STW0; G1SV32; G1SVW5; G1SWI6; G1SY53; G1SYJ6; G1SYU7; G1T0C1; G1T6D1; G1TDL2; G1TL06; G1TN82; G1TT27; G1TTQ5; G1TUB8; G1TUN8; G1TXF6; G1U7L1; G1U945; P09132; P20290; P61011; Q13765; Q3T0W9; Q9UHB9; U3KNW6; U3KPD5;
77-128
97×MG;ZN;
Assess
human delta-METTL18 60S ribosome Heteromer
P18077; P18124; P18621; P26373; P27635; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P62945; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q9Y3U8;
77-128
279×MG;ZN;
Assess
Tetracenomycin X bound to the human ribosome Heteromer
P18077; P18124; P18621; P26373; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P62945; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q96L21; Q9Y3U8;
77-128
229×MG;OCW;ZN;
Assess
Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A Heteromer
A0A087WNH4; A0A5F9D391; B7NZQ2; G1SE28; G1SE76; G1SF08; G1SHG0; G1SHQ2; G1SIT5; G1SKF7; G1SNY0; G1SQH0; G1STW0; G1SV32; G1SVW5; G1SWI6; G1SY53; G1SYJ6; G1SYU7; G1T0C1; G1T6D1; G1TL06; G1TN82; G1TSG1; G1TUB8; G1TUN8; G1TVT6; G1TX70; G1TXF6; G1U7L1; G1U945; O76094; P08240; P09132; P37108; P49458; P61011; P63048; Q3T0W9; Q9UHB9; Q9Y5M8; U3KNW6; U3KPD5;
77-128
ZN;MG;GTP;GNP;
Assess
RNC-SRP early complex Heteromer
A0A087WNH4; A0A5F9D391; A0A5F9D5B2; B7NZQ2; G1SE28; G1SE76; G1SF08; G1SHG0; G1SHQ2; G1SIT5; G1SKF7; G1SNY0; G1SQH0; G1STW0; G1SV32; G1SVW5; G1SWI6; G1SY53; G1SYJ6; G1SYU7; G1T0C1; G1T6D1; G1TDL2; G1TL06; G1TN82; G1TSG1; G1TTQ5; G1TTY7; G1TUB8; G1TUN8; G1TVT6; G1TX70; G1TXF6; G1U7L1; G1U945; J9PAS6; P16255; P18962; P21262; P33731; P61010; P63048; Q00004; Q3T0W9; U3KNW6; U3KPD5;
77-128
97×MG;ZN;GDP;
Assess
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution) Heteromer
O94874; P18077; P18124; P18621; P26373; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P61254; P61313; P61353; P61513; P61927; P61960; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q96HY6; Q96JB5; Q96L21; Q9Y3U8;
77-128
220×MG;ZN;
Assess
60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native) Heteromer
A0A6J3FY29; O94874; P18077; P18124; P18621; P26373; P32969; P35268; P36578; P38377; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P50914; P56537; P60059; P60468; P61254; P61313; P61353; P61513; P61927; P61960; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q96HY6; Q96JB5; Q96L21; Q9Y3U8;
77-128
220×MG;ZN;
Assess
60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native) Heteromer
O94874; P18077; P18124; P18621; P26373; P32969; P35268; P36578; P38377; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P60059; P60468; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q96L21; Q9Y3U8;
77-128
220×MG;ZN;
Assess
UFL1 E3 ligase bound 60S ribosome Heteromer
A0A5J5MXE5; O94874; P18077; P18124; P18621; P26373; P27635; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P61254; P61313; P61353; P61513; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q9Y3U8;
77-128
161×MG;ZN;
Assess
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native) Heteromer
O94874; P18077; P18124; P18621; P26373; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P61960; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q96HY6; Q96JB5; Q96L21; Q9Y3U8;
77-128
220×MG;ZN;
Assess
Structure of the mammalian 60S ribosomal subunit Heteromer
A0A4X1UAP0; A0A4X1VLH7; A0A8D0MVZ5; A1XQU3; A1XQU5; F1RGC0; F2Z522; F2Z546; F2Z554; F2Z567; I3L7Y1; I3LP78; I3LSD3; K7GP63; P49666; P62831; P62901; P63053; P67985; P83884; Q29205; Q29223; Q29361; Q6QAT0; Q95281; Q95342;
77-128
130×MG;ZN;
Assess
Structure of the idle mammalian ribosome-Sec61 complex Heteromer
A0A286ZL65; A0A287APR1; A0A287ASD0; A0A287B386; A0A4X1SH42; A0A4X1SN08; A0A4X1TBV3; A0A4X1TXJ8; A0A4X1V977; A0A4X1VLH7; A0A4X1W0N5; A0A4X1W808; A1XQU3; A1XQU5; F1SJJ5; I3LP78; K7GP63; P49666; P62901; P63053; P67985; Q29195; Q29205; Q29223; Q29361; Q2YGT9; Q6QAT0; Q95281;
77-128
130×MG;ZN;
Assess
Mus musculus brain neocortex ribosome 60S bound to Ebp1 Heteromer
O09167; O55142; P12970; P14115; P14148; P19253; P27659; P35980; P41105; P47911; P47915; P47962; P47963; P47964; P50580; P51410; P62717; P62751; P62830; P62889; P62900; P62911; P62918; P62947; P67984; P84099; Q4FZH2; Q4VAF2; Q505A8; Q5BLJ9; Q5M9K3; Q5M9P1; Q6ZWV3; Q6ZWV7; Q8BP67; Q9CPR4; Q9CR57; Q9CXW4; Q9CZM2; Q9D1R9; Q9D823; Q9D8E6; Q9JJI8;
78-127
247×MG;ZN;
Assess
Cryo-EM structure of a pre-60S ribosomal subunit - state C Heteromer
P18077; P18124; P18621; P26373; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P62987; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q969S3; Q96D46; Q96L21; Q9Y3U8;
79-125
251×MG;
Assess
Crystal structure of K29 linked di-Ubiquitinhomo-2-mer1-76
IOD;EDO;
Assess
X-ray crystal structure of the K33S mutant of ubiquitinmonomer1-76
CA;CL;
Assess
U7Ub7 Disulfide variantmonomer1-76
PO4;
Assess
Alternative structure of Ubiquitinmonomer1-76
Assess
Solution structure of V26A mutant of Ubiquitin at pH 6.0monomer1-76
Assess
Solution nmr structure of ubiquitin refined against dipolar couplings in 4 mediamonomer1-76
Assess
Description of the Structural fluctuations of proteins from structure-based calculations of Residua…monomer1-76
Assess
Solution structure of V26A mutant of Ubiquitin at pH 2.0monomer1-76
Assess
NMR residual dipolar couplings identify long range correlated motions in the backbone of the protei…monomer1-76
Assess
X-ray crystal structure of the K11S/K63S double mutant of ubiquitinmonomer1-75
GOL;
Assess
Crystal structure of the ubiquitin K11S mutantmonomer1-75
CA;CL;
Assess
Tailoring Encodable Lanthanide-Binding Tags as MRI Contrast Agents: xq-dSE3-Ubiquitin at 2.4 Angstr…monomer1-75
GD;SO4;
Assess
Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion proteinmonomer1-71
EDO;
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7bbd.1.Amonomer0.661-115
72.97
Assess