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A0A6J2DRS9 (A0A6J2DRS9_ZALCA) Zalophus californianus (California sealion)

General transcription and DNA repair factor IIH subunit TFB5 UniProtKBInterProInteractive Modelling

71 aa; Sequence (Fasta) ; 81 identical sequences

Available Structures

40 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W) Heteromer
A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
3-71
SF4; 17×ZN;MG;
Assess
Initial DNA-lesion (Cy5) binding by XPC and TFIIH Heteromer
P18074; P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;
2-68
SF4;ZN;CA;
Assess
Initial DNA-lesion (AP) binding by XPC and TFIIH complex2 Heteromer
P18074; P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;
2-68
SF4;ZN;CA;
Assess
Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1 Heteromer
P18074; P19447; P32780; P41208; P54727; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;
2-68
SF4;ZN;CA;
Assess
TFIIH in a pre-translocated state (without ADP-BeF3) Heteromer
P18074; P19447; P29083; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;
3-68
SF4;ZN;
Assess
Human holo-PIC in the closed state Heteromer
O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
2-67
MG; 17×ZN;SF4;
Assess
XPB-containing part of TFIIH in a post-translocated state (with ADP-BeF3) Heteromer
P19447; P29083; Q6ZYL4; Q92759;
3-68
ADP;MG;BEF;
Assess
TFIIH in a post-translocated state (with ADP-BeF3) Heteromer
P18074; P19447; P29083; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;
3-68
SF4;ZN;ADP;MG;BEF;
Assess
RNA polymerase II pre-initiation complex with closed promoter DNA in distal position Heteromer
A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
3-68
SF4; 17×ZN;MG;
Assess
RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W) Heteromer
A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
2-67
SF4; 16×ZN;MG;
Assess
Human Mediator with RNA Polymerase II Pre-initiation complex Heteromer
A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; A0JLT2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O43513; O60244; O75586; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q92759; Q96G25; Q96HR3; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9P086; Q9Y3C7;
3-68
SF4; 18×ZN;MG;
Assess
XPC release from Core7-XPA-DNA (AP) Heteromer
P18074; P19447; P23025; P32780; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;
4-69
SF4;ZN;
Assess
XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (AP) Heteromer
P18074; P19447; P23025; P32780; P41208; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;
4-69
SF4;ZN;CA;
Assess
Cryo-EM structure of the human TFIIH core complex Heteromer
P18074; P19447; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;
2-67
SF4;ZN;
Assess
XPC release from Core7-XPA-DNA (Cy5) Heteromer
P18074; P19447; P23025; P32780; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;
4-69
SF4;ZN;
Assess
XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (Cy5) Heteromer
P18074; P19447; P23025; P32780; P41208; Q01831; Q13888; Q13889; Q6ZYL4; Q92759;
4-69
SF4;ZN;CA;
Assess
RNA polymerase II pre-initiation complex with open promoter DNA Heteromer
A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
3-68
SF4; 15×ZN;ADP;MG;BEF;
Assess
RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position Heteromer
A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P51948; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
3-68
SF4; 17×ZN;MG;
Assess
Structure of the human Mediator-bound transcription pre-initiation complex Heteromer
A0JLT2; O15514; O43513; O60244; O75448; O75586; P13984; P18074; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q71SY5; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7;
2-67
MG; 16×ZN;SF4;
Assess
Structure of the human apo TFIIH Heteromer
P18074; P19447; P32780; P51948; Q13888; Q13889; Q6ZYL4; Q92759;
2-67
SF4;ZN;
Assess
The cryo-EM structure of human TFIIH Heteromer
P18074; P19447; Q13888; Q13889; Q6ZYL4; Q92759;
2-67
SF4;
Assess
Human core TFIIH bound to DNA within the PIC Heteromer
P18074; P19447; Q13888; Q13889; Q6ZYL4; Q92759;
1-62
Assess
Human holo-PIC in the initial transcribing state Heteromer
O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
1-62
MG; 11×ZN;
Assess
Core TFIIH-XPA-DNA complex with modelled p62 subunit Heteromer
P18074; P19447; P23025; P32780; Q13888; Q13889; Q6ZYL4; Q92759;
4-65
SF4;ZN;
Assess
Human holo-PIC in the closed state Heteromer
O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
1-62
MG; 11×ZN;
Assess
Human holo-PIC in the open state Heteromer
O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
1-62
MG; 11×ZN;
Assess
Structure of the core TFIIH-XPA-DNA complex Heteromer
P18074; P19447; P23025; Q13888; Q13889; Q6ZYL4; Q92759;
4-65
SF4;ZN;
Assess
Human holo-PIC in the initial transcribing state (no IIS) Heteromer
O15514; P13984; P18074; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P35269; P36954; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;
1-62
MG; 10×ZN;
Assess
Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;W0F;MG;
Assess
Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;MG;W0F;
Assess
TFIID-based holo PIC on SCP promoter Heteromer
A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;MG;
Assess
p53-bound TFIID-based holo PIC on HDM2 promoter Heteromer
A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
16×ZN;SF4;MG;
Assess
Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;MG;W0F;
Assess
Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;MG;W0F;
Assess
Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;MG;W0F;
Assess
Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;MG;W0F;
Assess
Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;W0F;MG;
Assess
Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positione… Heteromer
A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P51948; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;
7-60
17×ZN;SF4;MG;W0F;
Assess
Solution structure of the p8 TFIIH subunithomo-2-mer1-71
Assess
Crystal Structure of the Human TFIIH, Northeast Structural Genomics Target HR2045.monomer6-71
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7nvz.1.Fmonomer0.753-68
100.00
Assess