A5F5Y6 (NQRD_VIBC3) Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 /O395)

Na(+)-translocating NADH-quinone reductase subunit D UniProtKBInterProInteractive Modelling

210 aa; Sequence (Fasta) ; 8 identical sequences: Vibrio cholerae: A0A085RHY8; Vibrio paracholerae: A0A366AGD4; Vibrio cholerae serotype O1: C3LQ64; Vibrio cholerae 2740-80: A0A0K9US52; Vibrio cholerae RC385: D7HE77; Vibrio cholerae: A0A0X1KZ51; Vibrio cholerae serotype O1: Q9X4Q6; Vibrio tarriae: A0A366A557

Available Structures

16 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with korormic…
7xk7
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		5-210
2×FMN; 1×RBF; 1×IQT; 3×PEE; 2×LMT; 1×CA; 2×FES; 1×FAD;
Assess
X-ray structure of Na+-NQR from Vibrio cholerae at 3.5 A resolution
8acy
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		6-209
2×FMN; 1×RBF; 3×LMT; 1×NA; 2×FES; 1×FAD;
Assess
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 3
7xk5
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		7-210
2×FMN; 1×RBF; 2×PEE; 2×LMT; 2×FES; 1×CA; 1×FAD;
Assess
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 1
7xk3
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		7-210
2×FMN; 1×RBF; 2×PEE; 2×LMT; 2×FES; 1×CA; 1×FAD;
Assess
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 2
7xk4
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		7-210
2×FMN; 1×RBF; 2×PEE; 2×LMT; 2×FES; 1×CA; 1×FAD;
Assess
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with aurachin…
7xk6
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		7-210
2×FMN; 1×RBF; 1×0NI; 2×PEE; 2×LMT; 1×CA; 2×FES; 1×FAD;
Assess
X-ray structure of Na+-NQR from Vibrio cholerae at 3.4 A resolution
8acw
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		6-208
2×FMN; 1×RBF; 3×LMT; 1×K; 1×LYS; 2×FES; 1×FAD;
Assess
X-ray structure of Na+-NQR from Vibrio cholerae in different conformation at 3.1 A
8ad0
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		8-209
2×FMN; 1×RBF; 3×LMT; 1×3PE; 1×NA; 1×K; 1×BR; 2×FES; 1×FAD;
Assess
Cryo EM structure of Vibrio cholerae NQR
8evu
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		8-209
2×FMN; 1×RBF; 1×UQ1; 1×FES;
Assess
Cryo EM structure of Vibrio cholerae NQR
8ew3
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		8-209
2×FMN; 1×RBF; 1×UQ1; 1×FES;
Assess
Sodium pumping NADH-quinone oxidoreductase with inhibitor HQNO
8a1y
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		7-208
2×FMN; 1×RBF; 3×3PE; 4×LMT; 1×HQO; 2×FES; 1×FAD;
Assess
Sodium pumping NADH-quinone oxidoreductase with substrates NADH and Q2
8a1u
 Heteromer
P0C6E0; Q9KPS1; Q9KPS2; Q9X4Q6; Q9X4Q7; Q9X4Q8; 		7-208
2×FMN; 1×RBF; 3×LMT; 4×3PE; 1×UQ2; 2×NA; 2×FES; 1×FAD; 1×NAI;
Assess
Sodium pumping NADH-quinone oxidoreductase
8a1t
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		8-208
2×FMN; 1×RBF; 3×LMT; 3×3PE; 1×NA; 1×K; 2×FES; 1×FAD;
Assess
Sodium pumping NADH-quinone oxidoreductase with substrate Q1
8a1w
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		8-208
2×FMN; 1×RBF; 3×LMT; 4×3PE; 1×UQ1; 2×NA; 2×FES; 1×FAD;
Assess
Sodium pumping NADH-quinone oxidoreductase with inhibitor DQA
8a1x
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		8-208
2×FMN; 1×RBF; 3×LMT; 2×3PE; 2×FES; 1×FAD;
Assess
Sodium pumping NADH-quinone oxidoreductase with substrate Q2
8a1v
 Heteromer
A5F5X0; A5F5X1; A5F5Y4; A5F5Y5; A5F5Y7; 		8-208
1×RBF; 2×3PE; 3×LMT; 1×UQ2; 2×FMN; 2×NA; 2×FES; 1×FAD;
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
8ad0.1.Dmonomer0.728-209
100.00
Assess