D2HFP2 (D2HFP2_AILME) Ailuropoda melanoleuca (Giant panda)

Ubiquitin B UniProtKBInterProSTRINGInteractive Modelling

229 aa; Sequence (Fasta) 22 identical sequences

Sequence Features

 3-74Ubiquitin-like domain
IPR000626PF00240
 79-150Ubiquitin-like domain
IPR000626PF00240
 155-226Ubiquitin-like domain
IPR000626PF00240

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal Structure of Branched K11/K48-Linked Tri-Ubiquitin Heteromer
P0CG47;
6oq177-228
Structure of USP21 in complex with linear diubiquitin-aldehyde Heteromer
P0CG47; Q9UK80;
ZN;SO4;2y5b77-228
NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin Heteromer
P0CG47;
6oq277-228
Crystal structure of cIAP1 RING domain bound to UbcH5B-Ub and a non-covalent Ub Heteromer
P0CG47; P62837; Q13490;
ZN;6hpr150-228
SidC in complex with UbcH7~Ub Heteromer
P0CG47; P68036; Q6RCR4;
6cp2151-228
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubi... Heteromer
P0CG47; P30260; P34244; P60006; Q13042; Q16763; Q8NHZ8; Q96DE5; Q9BS18; Q9H1A4; Q9NYG5; Q9UJX2; Q9UJX3; Q9UJX4; Q9UJX5; Q9UJX6; Q9UM11; Q9UM13;
5l9t77-153
Lys27-linked di-ubiquitin Heteromer
P0CG47; P62987;
MG;5god153-228
Lys6-linked di-ubiquitin Heteromer
P0CG47; P62987;
5gob153-228
'Crystal structure of USP7 catalytic domain [V302K] mutant in complex with ubiquitin (malonate bo... Heteromer
P0CG47; Q93009;
GOL;MLA;5kyc153-228
Crystal structure of USP7 catalytic domain [L299A] mutant in complex with ubiquitin Heteromer
P0CG47; Q93009;
GOL;5kyf153-228
Lys48-linked di-ubiquitin Heteromer
P0CG47; P62987;
5goi153-228
Crystal structure of USP7 catalytic domain [V302K] mutant in complex with ubiquitin Heteromer
P0CG47; Q93009;
5kyd153-228
Catalytic domain of Sst2 F403A mutant bound to ubiquitin Heteromer
P0CG47; Q9P371;
ZN;EDO;4zfr153-228
Crystal Structure of a UbcH5b~Ub conjugate Heteromer
P0CG47; P62837;
GOL;5ulf153-228
Structure of phospho-Parkin bound to phospho-ubiquitin Heteromer
O60260; P0CG47;
GOL;ZN;MPD;SO4;6glc153-228
crystal structure of p-Ub-S65-NH2 Heteromer
P0CG47;
5x3m153-228
CRYSTAL STRUCTURE OF USP35 C450S IN COMPLEX WITH UBIQUITIN Heteromer
P0CG47; Q9P2H5;
ZN;SO4;EDO;5txk153-228
Structure of USP46-UbVME Heteromer
P0CG47; P62068;
ZN;5l8h153-228
X-ray structure of MHV PLP2 (Cys1716Ser) catalytic mutant in complex with free ubiquitin Heteromer
P0C6X9; P0CG47;
GOL;FMT;ZN;5wfi153-228
'Crystal structure of Lys27-linked di-ubiquitin in complex with its selective interacting protein... Heteromer
P0CG47; P15374;
6isu153-228
Structure of UbE2D2:RNF165:Ub complex Heteromer
P0CG47; P62837; Q6ZSG1;
PO4;ZN;5d0m153-228
Lys33-linked di-ubiquitin Heteromer
P0CG47; P62987;
5goh153-228
Crystal structure of USP7 catalytic domain [H294E] mutant in complex with ubiquitin Heteromer
P0CG47; Q93009;
EPE;5kye153-228
Crystal Structure of mUCH37-hRPN13 CTD-hUb complex Heteromer
P0CG47; Q16186; Q9WUP7;
4wlr153-228
APC11-Ubv shows role of noncovalent RING-Ubiquitin interactions in processive multiubiquitination... Heteromer
P0CG47; Q9NYG5;
ZN;5jg676-151
'Crystal structure of Ub-conjugated Ube2K C92K&K97A mutant (isopeptide linkage), 2.1 A resolution' Heteromer
P0CG47; P61086;
6jb7153-228
Crystal structure of Ube2K~Ubiquitin conjugate Heteromer
P0CG47; P61086;
GOL;5dfl153-228
Structure of the stable UBE2D3-UbDha conjugate Heteromer
P0CG47; P61077;
GOL;5ifr153-228
Crystal structure of ubiquitin-k6mimic Heteromer
P0CG47;
5xpk153-228
TRIM23 RING domain in complex with UbcH5-Ub Heteromer
P0CG47; P36406; P62837;
ZN;5vzw153-228
UCH-L5 in complex with ubiquitin-propargyl bound to the RPN13 DEUBAD domain Heteromer
P0CG47; Q16186; Q9Y5K5;
4uel153-228
Catalytic domain of Sst2 F403W mutant bound to ubiquitin Heteromer
P0CG47; Q9P371;
ZN;EDO;4zft153-228
REV1 UBM2 domain complex with ubiquitin Heteromer
P0CG47; Q9UBZ9;
NI;6asr153-228
TRIM25 RING domain in complex with Ubc13-Ub conjugate Heteromer
P0CG47; P61088; Q14258;
ZN;5eya153-228
Crystal structure of Ube2K and K48-linked di-ubiquitin complex Heteromer
P0CG47; P61086;
6if1153-228
Disulfide between E3 HECT ligase Smurf2 and Ubiquitin G76C Heteromer
P0CG47; Q9HAU4;
GOL;6fx4153-228
Skp1-F-box in complex with a ubiquitin variant Heteromer
P0CG47; P63208; Q969H0;
5ibk151-226
S65DParkin and pUB complex Heteromer
O60260; P0CG47;
ZN;PEG;CL;5n38153-228
UbcH5a-Ub isopeptide conjugate Heteromer
P0CG47; P51668;
5tut153-228
Structure of Pediculus humanus Parkin bound to phospho-ubiquitin Heteromer
E0VIU9; P0CG47;
ZN;SO4;5caw153-228
Structure of UbE2D2:RNF165:Ub complex Heteromer
P0CG47; P62837; Q6ZSG1;
ZN;5d0k153-228
WT-Parkin and pUB complex Heteromer
O60260; P0CG47;
ZN;TMO;CL;5n2w153-228
'Crystal structure of Ub-conjugated Ube2K C92K&K97A mutant (isopeptide linkage), 2.7 A resolution' Heteromer
P0CG47; P61086;
6jb6153-228
Crystal structure of USP30 (C77A) in complex with Lys6-linked diubiquitin Heteromer
P0CG47; Q70CQ3;
ZN;5ohp153-228
Structure of A20 OTU domain bound to ubiquitin Heteromer
P0CG47; P21580;
5lrx153-228
Disulfide between ubiquitin G76C and the E3 HECT ligase Huwe1 Heteromer
P0CG47; Q7Z6Z7;
ZN;SO4;6fyh153-228
Structure of human USP28 bound to Ubiquitin-PA Heteromer
P0CG47; Q96RU2;
PG4;CL;6hek153-228
Structure of a Legionella effector with its substrate Heteromer
P0CG47; Q6RCR0;
5yik153-228
Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages. Heteromer
P0CG47; Q45TR8;
MG; 18×SO4;5o44153-228
STRUCTURE OF UBIQUITYLATED-RPN10 FROM YEAST; Heteromer
P0CG47; P38886;
5ln1153-228
Structure of a Legionella effector with substrates Heteromer
P0CG47; Q6RCR0;
NAI;5yij153-228
Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub Heteromer
O43567; P0CG47; P62837;
ZN;5zbu153-228
USP7CD-UBL45 in complex with Ubiquitin Heteromer
P0CG47; Q93009;
5jtv153-228
USP7CD-CTP in complex with Ubiquitin Heteromer
P0CG47; Q93009;
CA;5jtj153-228
WDR48 (2-580):USP46~ubiquitin ternary complex Heteromer
P0CG47; P62068; Q8TAF3;
ZN;5cvn153-228
Structure of a TRAF6-Ubc13~Ub complex Heteromer
P0CG47; P61088; Q6IWL4;
ZN;5vnz153-228
Structure of the HOIP-RBR/UbcH5B~ubiquitin transfer complex Heteromer
P0CG47; P62837; Q96EP0;
16×ZN;5edv153-228
'Structural basis of the flanking zinc-finger motifs crucial for the E3 ligase activity of the LN... Heteromer
P0CG47; P61088; Q8TBB1;
ZN;5h7s153-228
'Crystal structure of USP30 in covalent complex with ubiquitin propargylamide (low resolution)' Heteromer
P0CG47; Q70CQ3;
ZN;5ohn153-228
SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome Heteromer
P02281; P06897; P0CG47; P50102; P53165; P62799; P84233; Q03067; Q6WNK7;
16×ZN;4zux153-228
WDR48:USP46~ubiquitin ternary complex Heteromer
P0CG47; P62068; Q8TAF3;
ZN;5cvo153-228
Structure of a TRAF6-Ubc13~Ub complex Heteromer
P0CG47; P61088; Q6IWL4;
ZN;K;5vo0153-228
Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin Heteromer
P0CG47; Q9NS91;
ZN;5vf0153-228
'Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Dd... Heteromer
P0CG47; P40087;
2mro153-228
Complex structure of MyUb (1080-1122) of human Myosin VI with K63-diUb Heteromer
P0CG47; Q9UM54;
2n13153-228
Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin Heteromer
P0CG47; Q6R3M4;
2kwu153-228
Solution Structure of UBM1 of murine Polymerase iota in Complex with Ubiquitin Heteromer
P0CG47; Q6R3M4;
2kwv153-228
'Solution NMR structure of histone H2A-H2B mono-ubiquitylated at H2A Lys15 in complex with RNF169... Heteromer
P04908; P06899; P0CG47; Q8NCN4;
5vey153-228
The structure of the complex between Rpn13 and K48-diUb Heteromer
P0CG47; Q16186;
5ymy153-228
Dot1L bound to the H2BK120 Ubiquitinated nucleosome Heteromer
P02281; P06897; P0CG47; P62799; P84233; Q8TEK3;
SAH;6o96153-228
cryo-EM structure of DOT1L bound to H2B ubiquitinated nucleosome Heteromer
P02281; P0CG47; P62799; P84233; Q6AZJ8; Q8TEK3;
SAM;6jma153-228
Solution Structure of the human Polymerase iota UBM1-Ubiquitin Complex Heteromer
P0CG47; Q9UNA4;
2mbb153-228
Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin Heteromer
P0CG47; Q9UBZ9;
5vzm153-228
Lanthanoid tagging via an unnatural amino acid for protein structure characterization Heteromer
P0CG47; P54725;
TB;5xbo153-228
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome Heteromer
O00231; O00232; O00487; O14818; O43242; P0CG47; P17980; P20618; P25786; P25787; P25788; P25789; P28066; P28070; P28072; P28074; P35998; P43686; P48556; P49720; P49721; P51665; P55036; P60896; P60900; P62191; P62195; P62333; Q13200; Q15008; Q99436; Q99460; Q9UNM6;
ZN;ADP;MG;ATP;6msb153-228
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome Heteromer
O00231; O00232; O00487; O14818; O43242; P0CG47; P17980; P20618; P25786; P25787; P25788; P25789; P28066; P28070; P28072; P28074; P35998; P43686; P48556; P49720; P49721; P51665; P55036; P60896; P60900; P62191; P62195; P62333; Q13200; Q15008; Q99436; Q99460; Q9UNM6;
ZN;ADP;MG;ATP;6msd153-228
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome Heteromer
O00231; O00232; O00487; O14818; O43242; P0CG47; P17980; P20618; P25786; P25787; P25788; P25789; P28066; P28070; P28072; P28074; P35998; P43686; P48556; P49720; P49721; P51665; P55036; P60896; P60900; P62191; P62195; P62333; Q13200; Q15008; Q99436; Q99460; Q9UNM6;
ZN;ADP;MG;ATP;6mse153-228
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome Heteromer
O00231; O00232; O00487; O14818; O43242; P0CG47; P17980; P20618; P25786; P25787; P25788; P25789; P28066; P28070; P28072; P28074; P35998; P43686; P48556; P49720; P49721; P51665; P55036; P60896; P60900; P62191; P62195; P62333; Q13200; Q15008; Q99436; Q99460; Q9UNM6;
MG;ZN;ATP;ADP;6msg153-228
UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin Heteromer
O60260; P0CG47; P0CG48; P68036;
ZN;6n13153-228
Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome Heteromer
P02302; P06897; P0CG47; P32657; P62799; Q28D68; S4RAZ3;
BEF;ADP;6ftx153-228
Structure of the human 26S proteasome bound to USP14-UbAl Heteromer
O00231; O00232; O00487; O14818; O43242; P0CG47; P17980; P20618; P25786; P25787; P25788; P25789; P28066; P28070; P28072; P28074; P35998; P43686; P48556; P49720; P49721; P51665; P54578; P55036; P60896; P60900; P62191; P62195; P62333; Q13200; Q15008; Q99436; Q99460; Q9UNM6;
ADP;5gjq153-228
'Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution' Heteromer
P0C0S8; P0CG47; P62799; P62807; P84233; Q12888;
5kgf153-228
Lys63-linked di-ubiquitin Heteromer
P0CG47; P62987;
5goj153-227
Structure of Chlamydia trachomatis effector protein Cdu1 bound to ubiquitin Heteromer
B0B9A0; P0CG47;
AYE;CL;6fdk153-227
Structure of the catalytic domain of USP28 (insertion deleted) bound to Ubiquitin-PA Heteromer
P0CG47; Q96RU2;
EDO;6hei153-227
'Crystal structure of the covalent complex between deubiquitinase ZUFSP (ZUP1) and Ubiquitin-PA' Heteromer
P0CG47; Q96AP4;
AYE;GOL;MLI;6ei1153-227
Crystal structure of human ZUFSP/ZUP1 in complex with ubiquitin Heteromer
P0CG47; Q96AP4;
GOL;FMT;MLI;EDO;NH4;ACT;PEG;6fge153-227
Structure of Chlamydia trachomatis effector protein ChlaDUB1 bound to ubiquitin Heteromer
B0B9A0; P0CG47;
AYE;GOL;SO4;6gzs153-227
Structure of RNF165 in complex with a UbcH5b~Ub conjugate Heteromer
P0CG47; P62837; Q6ZSG1;
GOL;ZN;SCN;5ulh153-227
Structure of Cezanne/OTUD7B OTU domain bound to ubiquitin Heteromer
P0CG47; Q6GQQ9;
GOL;5lrw153-227
Structure of MDM2-MDMX-UbcH5B-ubiquitin complex Heteromer
O15151; P0CG47; P62837; Q00987;
ZN;SO4;5mnj154-228
Crystal structure of p-DiUb-S65-COOH Heteromer
P0CG47;
5x3o153-227
Crimean Congo Hemorrhagic Fever Virus OTU domain in complex with ubiquitin-propargyl. Heteromer
P0CG47; Q6TQR6;
3znh153-227
Human Josephin-2 in complex with ubiquitin Heteromer
P0CG47; Q8TAC2;
NEH;6pgv153-227
'Crystal structure of USP30 in covalent complex with ubiquitin propargylamide (high resolution)' Heteromer
P0CG47; Q70CQ3;
AYE;ZN;5ohk153-227
K6-specific affimer bound to K6 diUb Heteromer
P0CG47;
GOL;5ohl153-227
Ubiquitin Variant (UbV.Fl11.1) bound to a human Skp1-Fbl11 fragment complex. Heteromer
P0CG47; P63208; Q9Y2K7;
6byh152-226
Structure of the SdeA DUB Domain Heteromer
P0CG47; Q6RCR0;
SO4;GVE;5cra153-227
Structure of USP12-UB-PRG/UAF1 Heteromer
O75317; P0CG47; Q8TAF3;
AYE;GOL;ZN;5l8w153-227
Structure of Cezanne/OTUD7B OTU domain bound to Lys11-linked diubiquitin Heteromer
P0CG47; Q6GQQ9;
GOL;PO4;5lrv153-227
Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe Heteromer
P0C6X7; P0CG47; P0CG48;
NI;ACT;5e6j153-227
Structure of Xanthomonas campestris effector protein XopD bound to ubiquitin Heteromer
P0CG47; Q3BYJ5;
5jp3153-227
Usp28 catalytic domain variant E593D in complex with UbPA Heteromer
P0CG47; Q96RU2;
AYE;SO4;6h4h153-227
UCH-L5 in complex with ubiquitin-propargyl bound to an activating fragment of INO80G Heteromer
P0CG47; Q6P4R8; Q9Y5K5;
4uf6153-227
Crystal structure of TAX1BP1 UBZ2 in complex with mono-ubiquitin Heteromer
P0CG47; Q86VP1;
ZN;5yt6153-226
Lys29-linked di-ubiquitin Heteromer
P0CG47; P62987;
5gog153-226
Ubiquitin Variant bound to USP2 Heteromer
O75604; P0CG47;
ZN;SO4;6dgf153-226
Crystal Structure of RNF165 in complex with a UbcH5b~Ub conjugate Heteromer
P0CG47; P62837; Q6ZSG1;
ZN;5ulk153-226
'Crystal structure of the winged-helix domain of Cockayne syndrome group B protein in complex wit... Heteromer
P0CG47; Q59FF6;
GOL;6a6i153-226
Ubiquitin Variant (UbV.Fl10.1) bound to a human Skp1-Fbl10 fragment complex. Heteromer
P0CG47; P63208; Q8NHM5;
6bva152-225
The crystal structure of the MERS-CoV papain-like protease (C111S) with human ubiquitin Heteromer
K9N7C7; P0CG47;
ZN;IPA;4wur155-228
Solution Structure of the human Polymerase iota UBM2-Ubiquitin Complex Heteromer
P0CG47; Q9UNA4;
2khw153-226
Lys11-linked diubiquitin Heteromer
P0CG47; P62987;
NA;5goc153-225
Linear tri-ubiquitin Heteromer
P0CG47; P62987;
5go7153-225
K11/K63-branched tri-Ubiquitin Heteromer
P0CG47; P62987;
5gok153-225
Structure of DNMT1 RFTS domain in complex with ubiquitin Heteromer
P0CG47; P26358;
PO4;ZN;5ydr153-225
Linear tetra-ubiquitin Heteromer
P0CG47; P62987;
5go8153-225
Crystal structure of the A20 ZnF4 and ubiquitin complex Heteromer
P0CG47; P21580;
ZN;3oj3153-225
Ubiquitin variant (UbV.Fbl10.1) bound to a human Skp1-Fbl11 fragment complex. Heteromer
P0CG47; P63208; Q9Y2K7;
6c16153-225
Crystal structure of the ternary RPN13 PRU-RPN2 (940-953)-ubiquitin complex Heteromer
P0CG47; Q16186; Q99460;
5v1y153-224
Crystal structure of the RPN13 PRU-RPN2 (932-953)-ubiquitin complex Heteromer
P0CG47; Q16186; Q99460;
5v1z153-224
Crystal structure of a Ube2S-ubiquitin conjugate Heteromer
P0CG47; Q16763;
5bnb153-224
Crystal structure of human HDAC6 in complex with ubiquitin Heteromer
P0CG47; Q9UBN7;
12×ZN;3phd157-228
'E3 ubiquitin-protein ligase RNF8 in complex with Ubiquitin-conjugating enzyme E2 N and Polyubiqu... Heteromer
O76064; P0CG47; P61088;
ZN;4whv153-223
USP46~ubiquitin BEA covalent complex Heteromer
P0CG47; P62068;
ZN;5cvm153-211
K11/48-branched teraubiquitinhomo-4-mer 5xdp153-226
Lys6-linked tri-ubiquitinhomo-3-mer ZN;3zlz153-225
Crystal structure of K48-linked diubiquitin with F45W mutation in the proximal unithomo-2-mer SO4;5emz153-228
Representative 2-conformer ensembles of K27-linked Ub2 from RDC datahomo-2-mer 5ujn153-228
Room temperature structure of ubiquitin variant u7ub25.2540homo-2-mer SO4;5tog151-225
Crystal structure of oxime-linked K6 diubiquitinhomo-2-mer 10×ZN;ETA;5khy153-227
Crystal Structure of Semi-synthetic Ubiquitin with Phospho-Ser65 and Ala46Cyshomo-2-mer 4zpz153-225
A dimeric ubiquitin formed by a single amino acid substitutionhomo-2-mer 6qk9153-225
Representative 1-conformer ensembles of K27-linked Ub2 from RDC datahomo-2-mer 5ujl153-224
Thr12 Phosphorylated Ubiquitinmonomer PO4;PEG;5nvg153-228
Ser20 phosphorylated ubiquitinmonomer 5k9p153-228
Crystal structure of DiUb-K6monomer PO4;5x3n153-228
Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND methodmonomer 6qf8153-228
'Solution structure of human ubiquitin with three alanine mutations in living eukaryotic cells by...monomer 5zd0153-228
Retracted state of S65-phosphorylated ubiquitinmonomer 5xk4153-228
Relaxed state of S65-phosphorylated ubiquitinmonomer 5xk5153-228
Crystal structure of SdeA-modified ubiquitin.monomer SO4;5m93153-227
Structure of S65D Phosphomimetic Ubiquitin Refined at 1.2 Angstroms Resolutionmonomer MG;5w46153-226
Human ubiquitin in the P1 space groupmonomer MG;5dk8154-227
Ser65 phosphorylated ubiquitin, major conformationmonomer SO4;4wzp153-226
Room temperature structure of ubiquitin variant u7ub25monomer SO4;5tof151-223
'Observing the overall rocking motion of a protein in a crystal - Orthorhombic Ubiquitin crystals...monomer 4xof153-224
'Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc ...monomer ZN;EDO;ACT;5nl5153-224
Solid-state NMR structure of ubiquitinmonomer 2msg153-224
'Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc ac...monomer ZN;ACT;5nlj153-223

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer 0.315b83.1.A1-226
100.00
monomer -0.095h07.1.A1-223
100.00
monomer 0.465b83.2.A1-229
99.56
monomer -3.323l0w.1.B1-134
67.94